Citrus Sinensis ID: 010335

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHcccccccEEEEcccccccEEcccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccHHHccccHccc
Coil and Loop (DISEMBL)
mgnsfgcsasgERLVSAARDGDFVEAKMLldcnpclakystfgglnsplhfAAAKGHNEIVALLLEngadvnsrnycgqTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVadfvpsvpfevmntqiegdrgdgssvkskcdqsALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVsavtfhygtsmdligagstplhfaacggnLKCCQVLLSRgasrmslncngwlpldVARMWGrhwlepllapssdavmprfhpsnylslplLSVLNVARecgllssttsssddadtCAVCLERACTVAAEGCRHELCVRCALYLcstnnipsemvgppgsipcplcrhgivsftklpgspvkdikqplslglctpcmlhtrdaecespacapeiRKNRVALvssdmlcpvtcspfpsvaiplctcndgpcpsfeprevetqdesprrsqggsveqdkmegprlerttcssmfwgrrscsrehqcnseina
Flexible Loop (DISEMBL)
mgnsfgcsasgeRLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTqiegdrgdgssVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSsttsssddadTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPrevetqdesprrsqggsveqdkmegprlerttcssmfwgrrscsrehqcnseina
Low Complexity Region (SEG)
MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLssttsssddadtCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA
Disordered region (IsUnstruct)
*****************ARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ********************SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS******DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDG**************************************************************
Disordered Region (DISOPRED)
MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHT********************************SPFPSV*****************************************************************C******
Disordered Region (DISEMBL)
*************LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG**************SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLL**********DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFE****************************LERTTCSSMFWGR***************
Disordered Region (DISPRO)
*********SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAP********LVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSF*********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	513	2.2.26 [Sep-21-2011]
Q4FE45	513	E3 ubiquitin-protein liga	yes	no	0.978	0.978	0.751	0.0
Q337A0	520	Probable E3 ubiquitin-pro	yes	no	0.996	0.982	0.653	0.0
Q6KAE5	496	Probable E3 ubiquitin-pro	yes	no	0.892	0.923	0.530	1e-131
Q6NLQ8	508	E3 ubiquitin-protein liga	no	no	0.719	0.726	0.578	1e-121
Q7EZ44	495	Probable E3 ubiquitin-pro	no	no	0.758	0.785	0.557	1e-121
Q4JHE0	420	Probable E3 ubiquitin-pro	no	no	0.690	0.842	0.591	1e-113
Q94B55	456	Putative E3 ubiquitin-pro	no	no	0.666	0.75	0.310	4e-36
Q65XV2	450	E3 ubiquitin-protein liga	no	no	0.715	0.815	0.312	1e-34
Q94CT7	446	Probable E3 ubiquitin-pro	no	no	0.662	0.762	0.308	4e-27
B2RXR6	993	Serine/threonine-protein	yes	no	0.403	0.208	0.310	2e-18

>sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/524 (75%), Positives = 440/524 (83%), Gaps = 22/524 (4%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYL+GRTALHFAA
Sbjct: 61  VGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLAGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           VNGH RCIRLV+ADF+PS   + +N+  E       + K+K +QSALSKFVNKAADGGIT
Sbjct: 121 VNGHARCIRLVLADFLPS---DKLNSLPETGV---VTAKNKSEQSALSKFVNKAADGGIT 174

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHMAALNG FDCVQLLLDL ANVSAVTFHYGTSMD+IGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 175 ALHMAALNGLFDCVQLLLDLEANVSAVTFHYGTSMDMIGAGSTPLHYAACGGNLKCCQIL 234

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           L+RGA +M+LNCNGWLP+D+ARMW RHWLEPLL+P+SD V+P F  SNYLSLPLLS+LN+
Sbjct: 235 LARGARKMTLNCNGWLPIDIARMWSRHWLEPLLSPNSDVVIPAFPHSNYLSLPLLSILNI 294

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARE GL S+T    D+ D CAVCLER CTVAAEGC H+LCVRCALYLCS++N+PS  VGP
Sbjct: 295 AREFGLQSATI--GDEVDICAVCLERTCTVAAEGCEHQLCVRCALYLCSSSNVPSVTVGP 352

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIR- 418
           PGSIPCPLCRHGI +F +LP S  +++K P+SLG C PCMLHT D  +  SP C P  + 
Sbjct: 353 PGSIPCPLCRHGITAFKRLPSSLTREMKLPMSLGFCAPCMLHTGDTTDQSSPTCPPTEQR 412

Query: 419 --KNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDE-----SPRRS 471
             K R A VSSD+ CPVTCSPFPSV IP+CTCN+G CP+FE    E   E     SP R+
Sbjct: 413 SSKTRAASVSSDIFCPVTCSPFPSVNIPMCTCNEGTCPNFETHGTERHSEEHVESSPSRT 472

Query: 472 QGGSVEQDKM-EGPRLER-TTCSSMFWGRRSCSREHQCNSEINA 513
              + EQ+K+ EG RL + TTCSSMFWGRRSCSRE+QCNSEINA
Sbjct: 473 ---TTEQEKIEEGQRLGKTTTCSSMFWGRRSCSRENQCNSEINA 513

Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q337A0|XB33_ORYSJ Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica GN=XBOS33 PE=2 SV=1

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/522 (65%), Positives = 420/522 (80%), Gaps = 11/522 (2%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNS GCSASGERLVSAARDGD VEA+MLL+ +P LA+YSTFGGLNSPLHFAAAKGH +I
Sbjct: 1   MGNSLGCSASGERLVSAARDGDAVEARMLLELSPALARYSTFGGLNSPLHFAAAKGHLDI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V LLLE GADVN RNYCGQTALM ACR+GHWEVVQ LLLFRCNVTRADYLSGRTALHFAA
Sbjct: 61  VTLLLEKGADVNVRNYCGQTALMHACRHGHWEVVQMLLLFRCNVTRADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFE------VMNTQIEGDRGDG--SSVKSKCDQSALSKFVN 172
            +G VRC+RL++ADFVPS P E      V   + + + G    SS+  K ++SA  +++N
Sbjct: 121 HDGLVRCVRLLLADFVPSAPLEDGASSTVDGGECQTNSGSSPCSSLGLKFNESARLRYIN 180

Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232
           K ADGG+TALHMAALNG+FDC+QLL+DL ANVSAVTF YGT+ +LIGAGSTPLH+AA GG
Sbjct: 181 KPADGGVTALHMAALNGHFDCMQLLIDLGANVSAVTFPYGTTANLIGAGSTPLHYAAGGG 240

Query: 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSL 292
           N +CCQ+LLS+GAS+++LNCNGWLP+DVARM+GR +LEPLL+P+S++ +P + PSNYL+L
Sbjct: 241 NAECCQLLLSKGASKLTLNCNGWLPIDVARMFGRRFLEPLLSPNSNSSIPAYQPSNYLAL 300

Query: 293 PLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNN 352
           P +S+LN+ARE GLL  T +S DD+D CAVCLER+C+VAAEGC HE C++CALYLCST+N
Sbjct: 301 PFMSILNIAREFGLL-HTVASVDDSDLCAVCLERSCSVAAEGCCHEFCIKCALYLCSTSN 359

Query: 353 IPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPA 412
              E  GPPGSIPCPLCR+GI+SFTKLP +P + +K   +L  C PCML+TR  +  +  
Sbjct: 360 TRVEFTGPPGSIPCPLCRNGIMSFTKLPSTPTEGLKSSSALTFCNPCMLNTRSVDSPATI 419

Query: 413 CAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTC-NDGPCPSFEPREVETQDESPRRS 471
              EIR+NRVA VSS+++CP+TCSPFPS A+P C C +D PC + E ++  ++ +SP+ S
Sbjct: 420 SKAEIRRNRVAAVSSELVCPLTCSPFPSSALPTCRCSDDDPCDAIETQD-GSEVQSPQPS 478

Query: 472 QGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 513
              S+E DK E   L+RT+CS MFW RRSC RE QCN+EINA
Sbjct: 479 HCASMEMDKREQQDLDRTSCSGMFWSRRSCHREEQCNAEINA 520

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6KAE5|XB32_ORYSJ Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2

 Score =  470 bits (1209), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/490 (53%), Positives = 337/490 (68%), Gaps = 32/490 (6%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +GNSFGCSASGERLVSAARDGD  EA+ LL+ NP LA+YSTFGG NSPLH+AAA+GH+EI
Sbjct: 7   VGNSFGCSASGERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHHEI 66

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V+LLLE+G ++N RNY GQTALMQAC+YGHWEVVQTL+LF  NV R DYL+G +ALHFAA
Sbjct: 67  VSLLLESGVEINLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAA 126

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           ++GH RC+RLV+AD+VPS+P    N+  +    +G S  +  D+  L K VN+ ADGG+T
Sbjct: 127 LHGHARCLRLVLADYVPSMP-NFWNSMKDSLSEEGPS--ADLDEDGLFKMVNQKADGGLT 183

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
            LHMAALNG+ +CVQLLLDL A+V   T   GT++DLIGAGSTPLH+AACGGN  CCQ+L
Sbjct: 184 PLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQLL 243

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           ++RGAS  + N +GW PL VAR W R+ LE +L+   ++ + R  PS YL LPL+S++++
Sbjct: 244 IARGASLSAQNASGWTPLMVARSWHRNSLEEILSKEPESRI-RTVPSPYLCLPLMSIMSI 302

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARE G       S    D CAVCLE +C+VAAEGC+HE C RCALYLCST+      V P
Sbjct: 303 AREFG-WRYLNQSPVCIDPCAVCLEGSCSVAAEGCKHEFCTRCALYLCSTSYTS---VSP 358

Query: 361 PGSIPCPLCRHGIVSFTKLPG-SPVKDI-KQPLSLGLCTPCMLHTRDAECESPACAPEIR 418
            G+IPCPLCRH I++FT LPG SP++++ +  LSL  CT C     D+   +P+ A  + 
Sbjct: 359 AGAIPCPLCRHPIIAFTALPGTSPIRELPRNSLSLSFCTTCPAVNSDS---TPSIASHLY 415

Query: 419 KN-----RVALVSSDMLCPVTCSPFPSVAIPLCTC----NDGPC--------PSFEPREV 461
           +      R+  + S     ++C   P++ +    C    +  PC        PSF  R  
Sbjct: 416 RTEFQCARMPPMGSSSFRSLSCQRLPAMKLNPSFCMGAMDTNPCLIRCSRFGPSF--RRS 473

Query: 462 ETQDESPRRS 471
            +Q ES RR+
Sbjct: 474 ASQGESSRRA 483

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NLQ8|XB32_ARATH E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana GN=XBAT32 PE=1 SV=1

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/387 (57%), Positives = 290/387 (74%), Gaps = 18/387 (4%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +GNSFGCSASGERLVSAARDGD  EAK LLD NP LA+YSTFG  NSPLH++AA+GH+EI
Sbjct: 7   VGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAAQGHHEI 66

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V+LL+E+G D+N RNY GQTALMQAC++GHWEVV  L+LF  N+ R+DYL+G TALH AA
Sbjct: 67  VSLLVESGVDINLRNYRGQTALMQACQHGHWEVVLILILFGANIHRSDYLNGGTALHLAA 126

Query: 121 VNGHVRCIRLVVADFVPSVP--FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 178
           +NGH RCIR+++++++PSVP  + ++  +     G         D S L + +N+AADGG
Sbjct: 127 LNGHPRCIRILLSEYIPSVPNCWSLLKNKKTSVAG--------FDSSVLHEVINRAADGG 178

Query: 179 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 238
           IT LH+AALNG+ + VQLLLDL A+V+ VT   GT++DLIGAGST LH+A+CGGN +CCQ
Sbjct: 179 ITPLHVAALNGHIETVQLLLDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQCCQ 238

Query: 239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFH----PSNYLSLPL 294
           +L+S+GA   ++N NGW P+ VAR W R+WLE +L P+++   P+ H    PS +L LPL
Sbjct: 239 LLISKGACLAAVNSNGWTPMMVARSWHRNWLEEILNPTTE--QPQLHLPNVPSPFLCLPL 296

Query: 295 LSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIP 354
           +S++N+A+ECG        +   D CAVCLER CTVAA+GC HE C  CALYL +T+   
Sbjct: 297 MSIVNIAQECG-WRENDCLTPCRDPCAVCLERKCTVAADGCAHEFCTNCALYLSTTSITS 355

Query: 355 SEMVG-PPGSIPCPLCRHGIVSFTKLP 380
           S+     PGS+PCPLCR+GIVSFTKLP
Sbjct: 356 SKTSNVTPGSVPCPLCRNGIVSFTKLP 382

E3 ubiquitin-protein ligase that mediates ubiquitination of ACC synthases (ACS). Negatively regulates ethylene biosynthesis probably via ubiquitin-dependent degradation of ACS4 and ACS7 enzymes. Regulates lateral root formation and development by controlling ethylene production which inhibits lateral root formation at high concentration.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7EZ44|XB35_ORYSJ Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica GN=XBOS35 PE=2 SV=1

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/400 (55%), Positives = 294/400 (73%), Gaps = 11/400 (2%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +G+SFGCSA+GERLVSAARDGD  EA  LL+ NP LA+YSTFG  NSPLH++AAKGH+EI
Sbjct: 7   VGDSFGCSATGERLVSAARDGDIQEAMALLELNPRLARYSTFGIRNSPLHYSAAKGHHEI 66

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V+LL+E+G D+N RN  GQTALMQAC YGHW+VVQ L+LF+ N+ + D  SG TA+HFAA
Sbjct: 67  VSLLIESGVDINLRNCRGQTALMQACLYGHWKVVQILVLFKANIHKKDCFSGATAIHFAA 126

Query: 121 VNGHVRCIRLVVADFVPSVP--FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 178
           + GH RC+RL+VAD+VPS+P  + VM+ +   +       K   D  AL + +N  +DGG
Sbjct: 127 LKGHTRCLRLLVADYVPSLPEFWSVMHAKCTDETN-----KEAFDAVALRRLINNKSDGG 181

Query: 179 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 238
           +T LH+AAL+G+ +CVQLLLDL A+VS VT + G+++DLIG+GSTPLH+AACGG+  CCQ
Sbjct: 182 VTPLHLAALHGHAECVQLLLDLGASVSEVTINDGSTIDLIGSGSTPLHYAACGGSAVCCQ 241

Query: 239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVL 298
           +L++ GA+  + N NG  PL VAR W +  +E +L   S+ V  R  PS+YLSLPL+S++
Sbjct: 242 LLVAAGANMRAQNTNGLTPLMVARSWHKSSVEGILTKRSE-VPVRILPSSYLSLPLMSIV 300

Query: 299 NVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMV 358
            +ARECG    T+ SS   D CA+CL+  CTV+AEGC HE C +CALYLC+T +  + + 
Sbjct: 301 KIARECG-WRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYLCATASSSTSIR 359

Query: 359 GPPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQP-LSLGLC 396
           G PGSIPCPLCRH IVSF +L   +P+K++     SL LC
Sbjct: 360 GVPGSIPCPLCRHTIVSFVRLTSTTPIKELPWTNKSLALC 399

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4JHE0|XB36_ORYSJ Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica GN=XBOS36 PE=2 SV=1

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/387 (59%), Positives = 272/387 (70%), Gaps = 33/387 (8%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNS GC   GERL +AA+DGD  EA+ LL  NP LA+ +TFG LNSPLH AAAKGH+EI
Sbjct: 1   MGNSLGCVGLGERLAAAAKDGDAAEAQRLLAANPGLARCTTFGNLNSPLHVAAAKGHHEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
            ALLLENGADVN+RN  GQT LMQACR+GHWEVVQTLL+FRCNV R + LSGRTALH AA
Sbjct: 61  AALLLENGADVNARNIYGQTPLMQACRFGHWEVVQTLLVFRCNVWRVENLSGRTALHMAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
             GHV+C+RL+VAD               GDR DG              +VNKAA+GG+T
Sbjct: 121 AGGHVKCVRLLVADAA-------------GDR-DG--------------YVNKAANGGVT 152

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFH-YGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
           ALH+AAL+G+ +CV LL+D  A+++A T       M  IGAGSTPLH+AACGG +KCCQ+
Sbjct: 153 ALHLAALHGHVECVHLLIDERASLAAQTLPCAAPPMASIGAGSTPLHYAACGGEVKCCQI 212

Query: 240 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLN 299
           L+SRGA R ++NCNGWLP+D AR+WG +WLE +L+P S   +P+F PS YLS PL S++ 
Sbjct: 213 LVSRGADRTAINCNGWLPIDAARIWGCNWLEHVLSPKSHLPIPKFPPSGYLSQPLPSLIA 272

Query: 300 VARECGL-LSSTTSSSDD--ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSE 356
           +ARE GL LSS  S   D  AD CAVCLER CTVAAEGC HELCV+CA+ LCS      +
Sbjct: 273 IAREQGLNLSSEVSDGFDEGADACAVCLERPCTVAAEGCDHELCVKCAMDLCSVIK-SYD 331

Query: 357 MVGPPGSIPCPLCRHGIVSFTKLPGSP 383
             G  G IPCPLCR GI SF      P
Sbjct: 332 SAGIAGEIPCPLCRTGIASFRTTAAPP 358

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94B55|XB31_ARATH Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1

 Score =  153 bits (386), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 179/402 (44%), Gaps = 60/402 (14%)

Query: 1   MGNSFGCSASGER-LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE 59
           MG S  C +  E  + ++ + GD +  + ++   P L   +T    +S LH AAA G  E
Sbjct: 1   MGQSMSCGSRPEHGIFASVQCGDIITIRRVMATEPSLLNQTTPYDRHSVLHVAAANGQIE 60

Query: 60  IVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119
           I++LLLE   + +  N   QT LM A  YG    V+ L     N+   D ++ RT LH+A
Sbjct: 61  ILSLLLERFTNPDLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCLHYA 120

Query: 120 AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI 179
           A  GH  C++ +++    S P  V                        ++FVN   D G 
Sbjct: 121 AYYGHANCVQAILS-AAQSSPVAV--------------------HWGYARFVNIRDDKGA 159

Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
           T LH+AA     +CV +LLD  + V A T  YG+       GSTPLH AA  G++ C + 
Sbjct: 160 TPLHLAARQRRPECVNVLLDSGSLVCASTSVYGS------PGSTPLHLAARSGSIDCVRK 213

Query: 240 LLSRGASRMSLNCNGWLPLDVARMWGRHW----------LEPLLAPSSDAVMPRFHPSNY 289
           LL+ GA R+  + +G +P  VA M  +H            EPL+ PS    +   +    
Sbjct: 214 LLAWGADRLQRDASGRIPYVVA-MKHKHGACGALLNPSSAEPLVWPSPLKFISELNDEAK 272

Query: 290 LSLP-LLSVLNVARECGLLSSTT---------------SSSDDADTCAVCLERACTVAAE 333
           L L   L   N  RE  +L  T                S   D + C +C E+ CT+  +
Sbjct: 273 LLLEQALMEANREREKTILKGTAYSLPSPSFSDTDDNMSEVSDTELCCICFEQVCTIEVK 332

Query: 334 GCRHELCVRCALYLCSTN--NIPSEMVGPPGSIPCPLCRHGI 373
            C H++C +C L LC  N  N  +  V PP    CP CR  I
Sbjct: 333 DCGHQMCAQCTLALCCHNKPNPTTSTVTPP---VCPFCRSTI 371

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q65XV2|XB3_ORYSJ E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica GN=XB3 PE=1 SV=1

 Score =  148 bits (374), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 133/425 (31%), Positives = 183/425 (43%), Gaps = 58/425 (13%)

Query: 1   MGNSFGCSASGER--LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
           MG+   C+ +G+      AA+ GD      LL  +P LA+ +T     S LH AAA G  
Sbjct: 1   MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATLYDRLSVLHIAAANGRI 60

Query: 59  EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
           E++++ L+ GA  ++ N   QT LM A  +G  + V  LL    N+   D +  RT LH 
Sbjct: 61  EVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHH 120

Query: 119 AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 178
           AA  GHV C++ ++A                      +      D    ++FVN   D G
Sbjct: 121 AAYYGHVDCLQAILA---------------------AAQTTPVADSWGFARFVNVRDDHG 159

Query: 179 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 238
            T LH+AA  G   CVQ+LL+  A VSA+T  YG        GST LH AA  GNL C +
Sbjct: 160 ATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFP------GSTSLHLAARSGNLDCIR 213

Query: 239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLS------- 291
            LL+ GA R+  +  G +P  VA          LL P+S   M    P  ++S       
Sbjct: 214 KLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEPMVWPSPLKFISELEPEAK 273

Query: 292 ---LPLLSVLNVARECGLLSSTTSS------------------SDDADTCAVCLERACTV 330
                 L   N  RE  +L+ T  S                    D + C +C ++ACT+
Sbjct: 274 ALLEAALMEANREREKKILNGTKYSLPSPSPGDDSADDDACSEVSDTELCCICFDQACTI 333

Query: 331 AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQP 390
             + C H++C  C L LC  N      + PP S  CP CR  I            D  +P
Sbjct: 334 EVQDCGHQMCAPCTLALCCHNKPNPTTLTPP-SPACPFCRGSISRLVVAQTRSACDPDKP 392

Query: 391 LSLGL 395
            SL L
Sbjct: 393 SSLQL 397

E3 ubiquitin-protein ligase required for full accumulation of the LRR receptor kinase XA21 and XA21-mediated disease resistance. Binding to XA21 may stabilize the receptor kinase and maintain its protein level. Autoubiquitinated in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp. japonica GN=XBOS31 PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 180/402 (44%), Gaps = 62/402 (15%)

Query: 1   MGNSFGCSASGER--LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
           MG+   CS   +   L  AA+ GD      LL  +P LA+ +T     + LH AAA G  
Sbjct: 1   MGHGLSCSRDTDEYDLFRAAQLGDIHALSALLAADPALARRATVYDRFTALHIAAANGRL 60

Query: 59  EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
           +++++LL+   DV+  +   QT LM A   G+ E V  LL    NV   D    RT LH 
Sbjct: 61  QVLSMLLDRDGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHH 120

Query: 119 AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA---LSKFVNKAA 175
           AA  GH  C++ ++                      G++ +++   +A    ++FVN   
Sbjct: 121 AAYYGHAECLQAIL----------------------GAAAQAQGPVAASWGFARFVNVRD 158

Query: 176 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 235
           + G T LH+AA +    CV+LLLD  A VSA T  YG        GST LH AA  G+++
Sbjct: 159 ERGATPLHLAARHARASCVRLLLDKGAIVSAPTAVYGFP------GSTALHLAARAGSME 212

Query: 236 CCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPS-------- 287
           C + LL+ GA R+  +  G +   VA   G      LL P+  A  P   PS        
Sbjct: 213 CIRELLAWGADRLQRDSAGRIAYAVAMRRGHRACAALLNPA--AAEPIVWPSPLKFIGEL 270

Query: 288 ----NYLSLPLLSVLNVARECGLLSST----------TSSSDDADTCAVCLERACTVAAE 333
                 L    L   N  RE  +L  +            S D+ + C +C E+AC++  +
Sbjct: 271 EADAKALLEAALMEANREREKRILHGSDINIKGGDEEEESEDEEEACNICFEQACSMEVK 330

Query: 334 GCRHELCVRCALYLC--STNNIPSEMVGPPGSIPCPLCRHGI 373
            C H++C  C L +C  S  N  + ++ PP    CP CR  I
Sbjct: 331 ECGHQMCAACTLAICCHSKPNPKTLLLHPPA---CPFCRTTI 369

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 114/248 (45%), Gaps = 41/248 (16%)

Query: 27  KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQAC 86
           ++LL+      + S  G L SPLH AA  GH++ + +LL++  D++ R+  G+TAL  A 
Sbjct: 549 ELLLERTNTGFEESDGGALKSPLHLAAYNGHHQALEVLLQSLVDLDIRDEKGRTALYLAA 608

Query: 87  RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT 146
             GH E V+ L+    ++   D ++ RT LH + +NGH  C+RL++              
Sbjct: 609 FKGHTECVEALVNQGASIFVKDNVTKRTPLHASVINGHTLCLRLLL-------------- 654

Query: 147 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 206
               +  D   V    D              G T L +A   G+ D V LLL+  ANV A
Sbjct: 655 ----ETADNPEVVDVKDAK------------GQTPLMLAVAYGHIDAVSLLLEKEANVDA 698

Query: 207 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
           V        D++G   T LH     G+ +C Q+LL + AS +  +  G  PL  A   G 
Sbjct: 699 V--------DIVGC--TALHRGIMTGHEECVQMLLEQEASILCKDSRGRTPLHYAAARGH 748

Query: 267 -HWLEPLL 273
             WL  LL
Sbjct: 749 ATWLNELL 756

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
225455410	512	PREDICTED: E3 ubiquitin-protein ligase X	0.998	1.0	0.884	0.0
255539509	513	ankyrin repeat-containing protein, putat	0.998	0.998	0.877	0.0
224136956	511	predicted protein [Populus trichocarpa]	0.994	0.998	0.863	0.0
224120064	511	predicted protein [Populus trichocarpa]	0.996	1.0	0.842	0.0
449451763	512	PREDICTED: E3 ubiquitin-protein ligase X	0.998	1.0	0.812	0.0
356575939	512	PREDICTED: E3 ubiquitin-protein ligase X	0.998	1.0	0.822	0.0
356530884	511	PREDICTED: E3 ubiquitin-protein ligase X	0.996	1.0	0.812	0.0
356535892	512	PREDICTED: E3 ubiquitin-protein ligase X	0.998	1.0	0.814	0.0
356559851	511	PREDICTED: E3 ubiquitin-protein ligase X	0.996	1.0	0.807	0.0
358343696	513	Ankyrin repeat-containing protein [Medic	0.998	0.998	0.785	0.0

>gi|225455410|ref|XP_002278915.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Vitis vinifera] gi|297741088|emb|CBI31819.3| unnamed protein product [Vitis vinifera]

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/513 (88%), Positives = 483/513 (94%), Gaps = 1/513 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           VNGHVRCIRLVVADFVPS P E +N Q  GDRGDGS++K+K DQSAL+KFVNKAADGGIT
Sbjct: 121 VNGHVRCIRLVVADFVPSAPHEAINVQNNGDRGDGSNLKNKYDQSALAKFVNKAADGGIT 180

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHMAALNGYFDCVQLLLD+HANVSAVTFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDIHANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           L+RGASR++LNCNGWLPLDVARMWGRHWLEPLLAP+SD+++P F PSN LSLPL+SVLN+
Sbjct: 241 LARGASRLTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSIIPVFPPSNCLSLPLMSVLNI 300

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARECGL SSTT SSD+ D CAVCLERACTVAAEGC HELCVRCALYLCST+NIPSEMVGP
Sbjct: 301 ARECGLQSSTT-SSDETDICAVCLERACTVAAEGCGHELCVRCALYLCSTSNIPSEMVGP 359

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420
           PGSIPCPLCRHGI SF KLPGSP K+IK  LSLGLCTPCMLH R+++  SPAC PEIRKN
Sbjct: 360 PGSIPCPLCRHGITSFVKLPGSPAKEIKLHLSLGLCTPCMLHPRESDRPSPACTPEIRKN 419

Query: 421 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 480
           RVA VSSD+LCPV+CSPFPSV IPLCTC+DGPCPSFEPREVETQDESPRRSQ  S++QDK
Sbjct: 420 RVASVSSDILCPVSCSPFPSVTIPLCTCDDGPCPSFEPREVETQDESPRRSQTTSIDQDK 479

Query: 481 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 513
           MEG RLERT+CSSMFWGRRSCSREHQCNSEINA
Sbjct: 480 MEGARLERTSCSSMFWGRRSCSREHQCNSEINA 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539509|ref|XP_002510819.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223549934|gb|EEF51421.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/514 (87%), Positives = 476/514 (92%), Gaps = 2/514 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           VALLLENGADVNSRNYCGQT+LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTSLMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           VNGH RCIRLVVADF+PS PFE  ++Q E D  D SS K K DQ ALSKFVNKAADGGIT
Sbjct: 121 VNGHARCIRLVVADFIPSSPFEATHSQPEVDPADASSAKHKFDQCALSKFVNKAADGGIT 180

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHMAALNGYFDCVQLLLD+HANVSAVTFHYGT+MDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDIHANVSAVTFHYGTTMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           ++RGASRM+LNCNGWLP+DVARMWGRHWLEPLLAP SD+V+PRF  SN+LSLPLLSVLN+
Sbjct: 241 IARGASRMTLNCNGWLPVDVARMWGRHWLEPLLAPYSDSVVPRFPHSNFLSLPLLSVLNI 300

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARECG+   TT SSDD D CAVCLERAC VAAEGCRHELCVRCALYLCST+NIPSEMVGP
Sbjct: 301 ARECGMQCLTT-SSDDPDICAVCLERACNVAAEGCRHELCVRCALYLCSTSNIPSEMVGP 359

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420
           PGSIPCPLCRH IVSF KLPGSP K+IK PLSLGLCTPCMLH+RD + +SPAC PEIRKN
Sbjct: 360 PGSIPCPLCRHAIVSFEKLPGSPAKEIKLPLSLGLCTPCMLHSRDTDGQSPACVPEIRKN 419

Query: 421 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 480
           RVA VSSD LCPVTCSPFPSVAIPLCTCNDGPCPSFEPR VETQDESPR SQ  SVEQDK
Sbjct: 420 RVASVSSDFLCPVTCSPFPSVAIPLCTCNDGPCPSFEPRTVETQDESPRGSQATSVEQDK 479

Query: 481 MEGPRLERTTCSS-MFWGRRSCSREHQCNSEINA 513
           +EGPRLE+T+CS  MFWGRRSCSREHQCNSEINA
Sbjct: 480 IEGPRLEKTSCSGMMFWGRRSCSREHQCNSEINA 513

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136956|ref|XP_002322458.1| predicted protein [Populus trichocarpa] gi|222869454|gb|EEF06585.1| predicted protein [Populus trichocarpa]

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/512 (86%), Positives = 474/512 (92%), Gaps = 2/512 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV RADYLSGRTALHFAA
Sbjct: 61  VGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVIRADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           VNGHVRCIRLVVADFVPS PFE M+TQ+EGD  DGSSVK++ DQSALS+FVNKAADGGIT
Sbjct: 121 VNGHVRCIRLVVADFVPSAPFEAMHTQMEGDTRDGSSVKNRFDQSALSRFVNKAADGGIT 180

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALH+AALNGYFDCVQLLLD+HANVS+VTFHYGT+MDLIGAGSTPLH+AACGG+LKCCQ+L
Sbjct: 181 ALHIAALNGYFDCVQLLLDIHANVSSVTFHYGTTMDLIGAGSTPLHYAACGGSLKCCQIL 240

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           L+RGASRM+LNCNGWLP+DVARMWGRHWLEPLLAP+SD+ +PRF  SNYLSLPLLSVLN+
Sbjct: 241 LARGASRMTLNCNGWLPVDVARMWGRHWLEPLLAPNSDSAIPRFPHSNYLSLPLLSVLNI 300

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARE G+  S  S+SDD D CAVCLERAC VAAEGC HELCVRCALYLCST NIPSEMVGP
Sbjct: 301 ARESGMHCS-VSASDDPDICAVCLERACNVAAEGCGHELCVRCALYLCSTCNIPSEMVGP 359

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420
            GSIPCPLCRHGIVSF +LPGS  K++K PLSLGLCTPCMLH+ D + +SPAC PE+RKN
Sbjct: 360 TGSIPCPLCRHGIVSFVRLPGSSAKEMKLPLSLGLCTPCMLHSHDVDGQSPACLPEVRKN 419

Query: 421 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 480
           RV  VSSD LCPVTCSPFPSVAIPLCTCNDGPCPSFEP+EVE+QDES  R Q  SVEQDK
Sbjct: 420 RVVSVSSDFLCPVTCSPFPSVAIPLCTCNDGPCPSFEPQEVESQDESSHRPQ-TSVEQDK 478

Query: 481 MEGPRLERTTCSSMFWGRRSCSREHQCNSEIN 512
           MEGPRLE+T+CSSMFWGRRSCSREHQCNSEIN
Sbjct: 479 MEGPRLEKTSCSSMFWGRRSCSREHQCNSEIN 510

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120064|ref|XP_002318233.1| predicted protein [Populus trichocarpa] gi|222858906|gb|EEE96453.1| predicted protein [Populus trichocarpa]

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/513 (84%), Positives = 463/513 (90%), Gaps = 2/513 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYL+GRTALHFAA
Sbjct: 61  VGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLNGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           VNGH RCIRLVVADFVPS PFE M+ +IEGD GDGSS K++ DQSALS+FVNKAADGGIT
Sbjct: 121 VNGHARCIRLVVADFVPSAPFEAMHARIEGDTGDGSSEKNRFDQSALSRFVNKAADGGIT 180

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHM ALNGYFDCVQLLLD+HANVS+ TFHYGT+MDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMVALNGYFDCVQLLLDIHANVSSETFHYGTTMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           L+RGASR +LNCNGWLP+DVARMWGRHWLEPLLA +S++ +PRF  SNYL+LPLLSVLN+
Sbjct: 241 LARGASRTTLNCNGWLPVDVARMWGRHWLEPLLATNSESTIPRFPHSNYLALPLLSVLNI 300

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARE GL  S T SSDD D CAVCLERAC VAAEGCRHELCVRCAL LCST NI SEMVGP
Sbjct: 301 ARESGLQCS-TRSSDDPDICAVCLERACNVAAEGCRHELCVRCALCLCSTCNISSEMVGP 359

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420
            GSIPCPLCRHGIVSF +LPGS  K++K PLSLGLC PCMLH RD + +S AC PE+RKN
Sbjct: 360 TGSIPCPLCRHGIVSFDRLPGSSAKEMKLPLSLGLCAPCMLHPRDMDGKSLACLPEVRKN 419

Query: 421 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 480
           RVA VSSD LCPVTCSPFPSVAIPLCTCND PCPS E +E E+QDES  RSQ  SVEQ K
Sbjct: 420 RVASVSSDFLCPVTCSPFPSVAIPLCTCNDEPCPSLETQEAESQDESSHRSQ-TSVEQVK 478

Query: 481 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 513
           +EGPRLE+T+CSSMFWGRRSCSREHQC SEINA
Sbjct: 479 VEGPRLEKTSCSSMFWGRRSCSREHQCTSEINA 511

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451763|ref|XP_004143630.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Cucumis sativus] gi|449506474|ref|XP_004162759.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Cucumis sativus]

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/513 (81%), Positives = 464/513 (90%), Gaps = 1/513 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V+LLLENGADVNSRNYCGQTA+MQACRYGHWEVVQTLL+FRCNV RADYLSGRTALHFAA
Sbjct: 61  VSLLLENGADVNSRNYCGQTAVMQACRYGHWEVVQTLLVFRCNVMRADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           VNGHVRC+RL+VADFVPSVP+E +N+Q    R DG +VK+KC+Q ALSKF+NKAADGGIT
Sbjct: 121 VNGHVRCLRLIVADFVPSVPYEAINSQSVVSRSDGVNVKNKCEQGALSKFINKAADGGIT 180

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHMAALNGY+DCV LLLDLHANVSAVTFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYYDCVHLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           L+RGASRM+LNCNGWLPLDVARMWGRHWLEPLL P+SD+++PRF  SN+LSLPLLS LN+
Sbjct: 241 LARGASRMTLNCNGWLPLDVARMWGRHWLEPLLVPNSDSILPRFPTSNHLSLPLLSALNI 300

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARECG   S  ++SDD DTCAVCLER C+VAAEGC HELCVRCALYLCST+NI SEM+G 
Sbjct: 301 ARECG-FKSMGATSDDGDTCAVCLERVCSVAAEGCGHELCVRCALYLCSTSNIHSEMIGS 359

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420
            GSIPCPLCRHGI+SF KL G+  K+ +  LSL +C+PC+LHT DAE ++  C PEIRKN
Sbjct: 360 LGSIPCPLCRHGIISFVKLSGATAKEKQLHLSLSICSPCILHTGDAEDQASTCTPEIRKN 419

Query: 421 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 480
           RVA VSSD+ CPVTCSPFPS AIPLCTCNDGPCP+FE R+V T+DESPR+SQ   ++QDK
Sbjct: 420 RVASVSSDVFCPVTCSPFPSAAIPLCTCNDGPCPTFESRDVGTEDESPRQSQATPIDQDK 479

Query: 481 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 513
           + GPR ERT+CSSMFWGRRSCSRE+QCNSEINA
Sbjct: 480 LGGPRSERTSCSSMFWGRRSCSRENQCNSEINA 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575939|ref|XP_003556093.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/513 (82%), Positives = 462/513 (90%), Gaps = 1/513 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLL+CNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           VALLLENGADVNSRNYCGQTALMQACRYGHWEV QTLLLFRCNV RADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVAQTLLLFRCNVIRADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           V+GHVRCIRLVVADFVPS P++ ++     DRG GS+VK K + SALSKFVNK ADGGIT
Sbjct: 121 VHGHVRCIRLVVADFVPSAPYQAIHAGTAVDRGGGSNVKGKHEHSALSKFVNKTADGGIT 180

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHMAALNGYFDCVQLLLDL+ANV+AVT++YGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDLNANVNAVTYNYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           ++ GASR++LNCNGWLPLD+ARMWGRHWLE LLAPSSDA MP F  SNYLSLPL+SVLN+
Sbjct: 241 VAHGASRLALNCNGWLPLDIARMWGRHWLEQLLAPSSDATMPTFSHSNYLSLPLMSVLNI 300

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARE GL SS T+SSD+ D CAVCLER C+VAAEGC HELCVRCALYLCSTNN+ SEMVGP
Sbjct: 301 AREYGLQSS-TASSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMVGP 359

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420
           PGSIPCPLCRHG+VSF KLPGS  K+ K  +SLGLCTPCMLH RD +  S +  PE+ +N
Sbjct: 360 PGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDLDKPSLSHTPEVGRN 419

Query: 421 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 480
           RVA V S++LCPVTCSPFPS+AIPLCTCNDGPCPSFEPREVETQD  P  SQ  +V+QDK
Sbjct: 420 RVASVPSEILCPVTCSPFPSMAIPLCTCNDGPCPSFEPREVETQDGLPHHSQASTVDQDK 479

Query: 481 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 513
           +EGPRL++TTCSSMFWGRRSCSREHQCNSEINA
Sbjct: 480 IEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530884|ref|XP_003534009.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/513 (81%), Positives = 456/513 (88%), Gaps = 2/513 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLL+CNPCLAKYSTFGGLNSPLHFAA+KGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF+CNV +ADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFKCNVMKADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           +NGH RCIRLVVADFVPS PFE ++  +  + GD S+VK+K +QSALSKF+NK AD GIT
Sbjct: 121 INGHARCIRLVVADFVPSAPFEALHAHMVAE-GDASNVKNKYEQSALSKFINKTADAGIT 179

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHMAALNGYFDCVQLLLDL ANVSA TFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 180 ALHMAALNGYFDCVQLLLDLSANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 239

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           L+RGASRM+LNCNGWLPLDVARMWGRHWLEPLL P+SDA +  F  SNYLSLPL+SVLN+
Sbjct: 240 LARGASRMALNCNGWLPLDVARMWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNI 299

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARECGL  STT+SS++ D CAVCLER C+VAAEGC HELCVRCALYLCST+N+ SE  GP
Sbjct: 300 ARECGL-QSTTTSSNEVDACAVCLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETGGP 358

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420
           PGSIPCPLCRHGIVSF KL GS  K+ K  +SL LCTPCMLH RD +  S +  PEIR+N
Sbjct: 359 PGSIPCPLCRHGIVSFVKLSGSKAKENKLHVSLSLCTPCMLHPRDLDRPSLSLTPEIRRN 418

Query: 421 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 480
           RVA V S+MLCPVTC+PFPSVAIPLCTCNDGPCPSFEPRE E QD SPR SQ   ++Q+K
Sbjct: 419 RVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPSFEPREAEAQDGSPRHSQAAMMDQNK 478

Query: 481 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 513
           M+GPRLE+ TCS MFWGRRSCSREHQCNSEINA
Sbjct: 479 MDGPRLEKMTCSGMFWGRRSCSREHQCNSEINA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535892|ref|XP_003536476.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/513 (81%), Positives = 461/513 (89%), Gaps = 1/513 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEA+MLL+CNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAQMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV RADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           V+GHVRCIRLVVADFVPS  ++ ++   + DRG GS+ K K +QSALSKF+NK ADGGIT
Sbjct: 121 VHGHVRCIRLVVADFVPSALYQAIHAGTDVDRGGGSNAKGKHEQSALSKFINKTADGGIT 180

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHMAALNGYFDCVQLLLDL+ANV+AVT+HYGTSMDLIGAGSTPLH+ ACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDLNANVNAVTYHYGTSMDLIGAGSTPLHYGACGGNLKCCQIL 240

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           ++RGASR++LNCNGWLPLD+ARMWGRHWLE LLAPSSDA +P F  SNYLSLPL+SVLN+
Sbjct: 241 VARGASRLALNCNGWLPLDIARMWGRHWLEQLLAPSSDASIPTFSHSNYLSLPLMSVLNI 300

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARE GL SS T SSD+ D CAVCLER C+VAAEGC HELCVRCALYLCSTNN+ SEM+GP
Sbjct: 301 AREYGLQSSPT-SSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMLGP 359

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420
           PGSIPCPLCRHG+VSF KLPGS  K+ K  +SLGLCTPC+LH RD +  S +  PEI +N
Sbjct: 360 PGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCILHPRDLDQPSLSHTPEIGRN 419

Query: 421 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 480
           RVA V S++ CPVTCSPFPS+AIPLCTCNDGPCPSFEP EVETQD SP  SQ  +V+QDK
Sbjct: 420 RVASVPSEIRCPVTCSPFPSMAIPLCTCNDGPCPSFEPGEVETQDGSPHHSQASTVDQDK 479

Query: 481 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 513
           +EGPRL++TTCSSMFWGRRSCSREHQCNSEINA
Sbjct: 480 IEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559851|ref|XP_003548210.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/513 (80%), Positives = 457/513 (89%), Gaps = 2/513 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLL+CNPCLAKYSTFGGLNSPLHFAA+KGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV +ADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVVKADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           +NGH RCIRLV+ADFVPS PFE ++ +I+ + GDGS+VK+K +QS LSKFVNK AD GIT
Sbjct: 121 INGHARCIRLVLADFVPSAPFEALHARIDAE-GDGSNVKNKHEQSVLSKFVNKTADAGIT 179

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHMAALNG+FDCVQLLLDL+ANVSA TFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 180 ALHMAALNGHFDCVQLLLDLNANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 239

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           L+RGASRM+LNCNGWLPLDVARMWGRHWLEPLL P+SDA +  F  SNYLSLPL+SVLN+
Sbjct: 240 LARGASRMALNCNGWLPLDVARMWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNI 299

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARECGL  STT+SS++ D CAVCLER C+VAAEGC HELCVRCALYLCST+N+ SE  GP
Sbjct: 300 ARECGL-QSTTTSSNEVDVCAVCLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETCGP 358

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 420
           PGSIPCPLCRHGI+SF KLPGS  K+ K  +SL LCTPCMLH  D +  + +  PEIR+N
Sbjct: 359 PGSIPCPLCRHGIISFVKLPGSQAKENKLHVSLSLCTPCMLHPCDLDRPTVSHTPEIRRN 418

Query: 421 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 480
           RVA V S+MLCPVTC+PFPSVAIPLCTCN+GPCPSFEPRE E Q  SP  S    ++QDK
Sbjct: 419 RVASVPSEMLCPVTCTPFPSVAIPLCTCNNGPCPSFEPREAEAQGGSPLHSHASMMDQDK 478

Query: 481 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 513
           M+GPRLE+TTCS MFWGRRSCSREHQCNSEINA
Sbjct: 479 MDGPRLEKTTCSGMFWGRRSCSREHQCNSEINA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343696|ref|XP_003635934.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355501869|gb|AES83072.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/514 (78%), Positives = 449/514 (87%), Gaps = 2/514 (0%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLL+ NPCLAKYSTFGGLNSPLHFAA+KGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLEFNPCLAKYSTFGGLNSPLHFAASKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           VALLLE GADVNSRNYCGQTALMQACR+G+WEVVQTL+L+RCNV +ADYLSGRTALHFAA
Sbjct: 61  VALLLEKGADVNSRNYCGQTALMQACRHGYWEVVQTLMLYRCNVMKADYLSGRTALHFAA 120

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           V+GHVRCIRLVVAD VPS P+E ++ +++ D GDGS+ K K +QS LSKFVNK AD GIT
Sbjct: 121 VSGHVRCIRLVVADLVPSAPYETLHARVDADVGDGSNTKRKNEQSELSKFVNKTADAGIT 180

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           ALHMAALNGYFDCVQLLLDL+AN SA T+HYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
           LS+GA+RM+LNCNGWLPLDVARMWGRHWLEPLLAPSSD ++  F  SNYL LPL+SVLN+
Sbjct: 241 LSKGATRMALNCNGWLPLDVARMWGRHWLEPLLAPSSDTIVSSFPTSNYLLLPLMSVLNI 300

Query: 301 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
           ARE GL S TT SS++ D CAVCLER CTVAAEGC HELCVRCALYLCST N+ SEM GP
Sbjct: 301 AREYGLHSPTT-SSNEIDFCAVCLERPCTVAAEGCMHELCVRCALYLCSTANVSSEMHGP 359

Query: 361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPA-CAPEIRK 419
           PGS+PCPLCRHGI+SF KLP    K+ K   SL +CTPC+ H RD +  S +    EIRK
Sbjct: 360 PGSVPCPLCRHGIISFVKLPSFQPKENKLHASLSMCTPCIQHPRDIDQSSFSHNTSEIRK 419

Query: 420 NRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQD 479
           NRVA VSS+MLCPVTC+PFPSVAIPLCTCNDGPCP FEP E ETQDESPR SQ  + +QD
Sbjct: 420 NRVASVSSEMLCPVTCTPFPSVAIPLCTCNDGPCPPFEPGEDETQDESPRHSQASTTDQD 479

Query: 480 KMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 513
           KMEGP+L + TCS+MFWGRRSCSRE+QCNSEINA
Sbjct: 480 KMEGPKLVKKTCSNMFWGRRSCSRENQCNSEINA 513

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
TAIR|locus:2182860	513	XBAT33 "XB3 ortholog 3 in Arab	0.984	0.984	0.750	5.5e-212
TAIR|locus:2172600	508	XBAT32 "AT5G57740" [Arabidopsi	0.912	0.921	0.501	5.4e-118
UNIPROTKB|Q65XV2	450	XB3 "E3 ubiquitin-protein liga	0.385	0.44	0.314	2.8e-23
TAIR|locus:2053205	456	XBAT31 "XB3 ortholog 1 in Arab	0.384	0.432	0.300	2.2e-21
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.477	0.129	0.325	8.4e-18
ZFIN|ZDB-GENE-050208-655	298	ankrd29 "ankyrin repeat domain	0.391	0.674	0.348	1.7e-17
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.477	0.215	0.318	4.2e-17
ZFIN|ZDB-GENE-030131-7450	1280	tnks "tankyrase, TRF1-interact	0.493	0.197	0.323	8.2e-17
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.477	0.131	0.318	4.7e-16
UNIPROTKB|F1PRC8	1916	ANK1 "Uncharacterized protein"	0.477	0.127	0.318	4.9e-16

TAIR|locus:2182860 XBAT33 "XB3 ortholog 3 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 2049 (726.3 bits), Expect = 5.5e-212, P = 5.5e-212
 Identities = 391/521 (75%), Positives = 434/521 (83%)

Query:     1 MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
             MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct:     1 MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query:    61 VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
             V LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYL+GRTALHFAA
Sbjct:    61 VGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLAGRTALHFAA 120

Query:   121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
             VNGH RCIRLV+ADF+PS   + +N+  E   G  ++ K+K +QSALSKFVNKAADGGIT
Sbjct:   121 VNGHARCIRLVLADFLPS---DKLNSLPE--TGVVTA-KNKSEQSALSKFVNKAADGGIT 174

Query:   181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
             ALHMAALNG FDCVQLLLDL ANVSAVTFHYGTSMD+IGAGSTPLH+AACGGNLKCCQ+L
Sbjct:   175 ALHMAALNGLFDCVQLLLDLEANVSAVTFHYGTSMDMIGAGSTPLHYAACGGNLKCCQIL 234

Query:   241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 300
             L+RGA +M+LNCNGWLP+D+ARMW RHWLEPLL+P+SD V+P F  SNYLSLPLLS+LN+
Sbjct:   235 LARGARKMTLNCNGWLPIDIARMWSRHWLEPLLSPNSDVVIPAFPHSNYLSLPLLSILNI 294

Query:   301 ARECGLLXXXXXXXXXXXXCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 360
             ARE GL             CAVCLER CTVAAEGC H+LCVRCALYLCS++N+PS  VGP
Sbjct:   295 AREFGL--QSATIGDEVDICAVCLERTCTVAAEGCEHQLCVRCALYLCSSSNVPSVTVGP 352

Query:   361 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAP-EIR 418
             PGSIPCPLCRHGI +F +LP S  +++K P+SLG C PCMLHT D  +  SP C P E R
Sbjct:   353 PGSIPCPLCRHGITAFKRLPSSLTREMKLPMSLGFCAPCMLHTGDTTDQSSPTCPPTEQR 412

Query:   419 --KNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGG-- 474
               K R A VSSD+ CPVTCSPFPSV IP+CTCN+G CP+FE    E   E    S     
Sbjct:   413 SSKTRAASVSSDIFCPVTCSPFPSVNIPMCTCNEGTCPNFETHGTERHSEEHVESSPSRT 472

Query:   475 SVEQDKME-GPRLERTT-CSSMFWGRRSCSREHQCNSEINA 513
             + EQ+K+E G RL +TT CSSMFWGRRSCSRE+QCNSEINA
Sbjct:   473 TTEQEKIEEGQRLGKTTTCSSMFWGRRSCSRENQCNSEINA 513

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2172600 XBAT32 "AT5G57740" [Arabidopsis thaliana (taxid:3702)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 252/502 (50%), Positives = 329/502 (65%)

Query:     1 MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
             +GNSFGCSASGERLVSAARDGD  EAK LLD NP LA+YSTFG  NSPLH++AA+GH+EI
Sbjct:     7 VGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAAQGHHEI 66

Query:    61 VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
             V+LL+E+G D+N RNY GQTALMQAC++GHWEVV  L+LF  N+ R+DYL+G TALH AA
Sbjct:    67 VSLLVESGVDINLRNYRGQTALMQACQHGHWEVVLILILFGANIHRSDYLNGGTALHLAA 126

Query:   121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
             +NGH RCIR+++++++PSVP     + ++  +   +SV    D S L + +N+AADGGIT
Sbjct:   127 LNGHPRCIRILLSEYIPSVPN--CWSLLKNKK---TSVAG-FDSSVLHEVINRAADGGIT 180

Query:   181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
              LH+AALNG+ + VQLLLDL A+V+ VT   GT++DLIGAGST LH+A+CGGN +CCQ+L
Sbjct:   181 PLHVAALNGHIETVQLLLDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQCCQLL 240

Query:   241 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFH----PSNYLSLPLLS 296
             +S+GA   ++N NGW P+ VAR W R+WLE +L P+++   P+ H    PS +L LPL+S
Sbjct:   241 ISKGACLAAVNSNGWTPMMVARSWHRNWLEEILNPTTE--QPQLHLPNVPSPFLCLPLMS 298

Query:   297 VLNVARECGLLXXXXXXXXXXXXCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSE 356
             ++N+A+ECG              CAVCLER CTVAA+GC HE C  CALYL ST +I S 
Sbjct:   299 IVNIAQECGW-RENDCLTPCRDPCAVCLERKCTVAADGCAHEFCTNCALYL-STTSITSS 356

Query:   357 MVG--PPGSIPCPLCRHGIVSFTKLPGSPVK-----DIKQPLSLGLCTPCMLHTRD-AEC 408
                   PGS+PCPLCR+GIVSFTKLP +          +  +SL  CT C     D A  
Sbjct:   357 KTSNVTPGSVPCPLCRNGIVSFTKLPHTTATTRTSTSSRTSISLSFCT-CSSDVLDTALL 415

Query:   409 ESP--ACAPEIRK--NRVALVS-SDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVET 463
              +P  +C P + +  +R    + S     ++C  FP     LC    G     EPR    
Sbjct:   416 TNPHYSCKPVVSRTGSRTPQSARSSAFRSLSCRRFPP---SLCL---GGSDVDEPRSRLI 469

Query:   464 QDESPRRSQGGSVEQDKMEGPR 485
                  R   G      ++EG R
Sbjct:   470 GGSYSRSGVGFRRSTSQVEGKR 491

GO:0008270 "zinc ion binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010311 "lateral root formation" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010366 "negative regulation of ethylene biosynthetic process" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|Q65XV2 XB3 "E3 ubiquitin-protein ligase XB3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 209 (78.6 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
 Identities = 68/216 (31%), Positives = 101/216 (46%)

Query:     1 MGNSFGCSASGER--LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
             MG+   C+ +G+      AA+ GD      LL  +P LA+ +T     S LH AAA G  
Sbjct:     1 MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATLYDRLSVLHIAAANGRI 60

Query:    59 EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
             E++++ L+ GA  ++ N   QT LM A  +G  + V  LL    N+   D +  RT LH 
Sbjct:    61 EVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHH 120

Query:   119 AAVNGHVRCIR--LVVADFVP---SVPF-EVMNTQ---------IEGDRGDGSSVKSKCD 163
             AA  GHV C++  L  A   P   S  F   +N +         +   +G    V+   +
Sbjct:   121 AAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLE 180

Query:   164 QSAL-SKFVNKAADGGITALHMAALNGYFDCVQLLL 198
               A+ S         G T+LH+AA +G  DC++ LL
Sbjct:   181 NGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLL 216

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

TAIR|locus:2053205 XBAT31 "XB3 ortholog 1 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
 Identities = 65/216 (30%), Positives = 98/216 (45%)

Query:     1 MGNSFGCSASGER-LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE 59
             MG S  C +  E  + ++ + GD +  + ++   P L   +T    +S LH AAA G  E
Sbjct:     1 MGQSMSCGSRPEHGIFASVQCGDIITIRRVMATEPSLLNQTTPYDRHSVLHVAAANGQIE 60

Query:    60 IVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119
             I++LLLE   + +  N   QT LM A  YG    V+ L     N+   D ++ RT LH+A
Sbjct:    61 ILSLLLERFTNPDLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCLHYA 120

Query:   120 AVNGHVRCIRLVVADFVPSVPFEV-----MNTQIEGDRGD------GSSVKSKC-----D 163
             A  GH  C++ +++    S P  V         I  D+G           + +C     D
Sbjct:   121 AYYGHANCVQAILSA-AQSSPVAVHWGYARFVNIRDDKGATPLHLAARQRRPECVNVLLD 179

Query:   164 QSAL-SKFVNKAADGGITALHMAALNGYFDCVQLLL 198
               +L     +     G T LH+AA +G  DCV+ LL
Sbjct:   180 SGSLVCASTSVYGSPGSTPLHLAARSGSIDCVRKLL 215

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051049 "regulation of transport" evidence=RCA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 253 (94.1 bits), Expect = 8.4e-18, P = 8.4e-18
 Identities = 85/261 (32%), Positives = 128/261 (49%)

Query:    15 VSAARDGDFVEA-KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
             +  A  GD ++  ++LL  N  +    T   L +PLH AA  GH+ +  +LL+ GA  NS
Sbjct:   342 IHMAAQGDHLDCVRLLLQYNAEIDDI-TLDHL-TPLHVAAHCGHHRVAKVLLDKGAKPNS 399

Query:    74 RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVV 132
             R   G T L  AC+  H  V++ LL    ++      SG T LH A+  GH+  ++ L+ 
Sbjct:   400 RALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTE-SGLTPLHVASFMGHLPIVKNLLQ 458

Query:   133 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 192
              D  P+V    + T +      G +  +K      +K VN  A    T LH AA  G+ +
Sbjct:   459 RDASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTN 517

Query:   193 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 252
              V+LLL+ +AN +  T           AG TPLH AA  G+++    LL +GAS+  +  
Sbjct:   518 MVKLLLENNANPNLATT----------AGHTPLHIAAREGHVETALALLEKGASQACMTK 567

Query:   253 NGWLPLDVARMWGRHWLEPLL 273
              G+ PL VA  +G+  +  LL
Sbjct:   568 KGFTPLHVAAKYGKVRVAELL 588

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-050208-655 ankrd29 "ankyrin repeat domain 29" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 77/221 (34%), Positives = 103/221 (46%)

Query:    46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
             ++ L FA+ +GHNEIV LL E GA    +   G TAL  AC++GH  VV TLL    NV 
Sbjct:    77 STALFFASQQGHNEIVKLLFEFGASTEFQTKDGGTALCAACQFGHSRVVDTLLKNGANVH 136

Query:   106 RADYLS-GRTALHFAAVNGHVRCIRLVVADFVP-SVPFEVMNTQIEGDRGDGSSVKSKCD 163
               D L+ G TAL  A+  GHV  IR +++     + P E     +      G S   K  
Sbjct:   137 --DQLNDGATALFLASQEGHVNLIRQLLSSGAKVNQPREDGTAPLWMAAQMGHSEVVKV- 193

Query:   164 QSALSKFVNKAAD--GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
                L +  ++ AD   G TAL  AA  G           H +V      +  S+ ++  G
Sbjct:   194 --LLLRGADRDADRKDGSTALFKAAHKG-----------HCSVMEELLKFSPSLGILKNG 240

Query:   222 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
             ST LH A  GG+LK   +LL   A     N N  LP D+ +
Sbjct:   241 STALHAAVMGGSLKAVDLLLKANADPALPNTNNELPRDLTK 281

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 4.2e-17, P = 4.2e-17
 Identities = 83/261 (31%), Positives = 127/261 (48%)

Query:    15 VSAARDGDFVEA-KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
             +  A  GD ++  ++LL  N  +    T   L +PLH AA  GH+ +  +LL+ GA  NS
Sbjct:   308 IHMAAQGDHLDCVRLLLQYNAEIDDI-TLDHL-TPLHVAAHCGHHRVAKVLLDKGAKPNS 365

Query:    74 RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVV 132
             R   G T L  AC+  H  V++ LL    ++      SG T LH A+  GH+  ++ L+ 
Sbjct:   366 RALNGFTPLHIACKKNHIRVMELLLKMGASIDAVTE-SGLTPLHVASFMGHLPIVKSLLQ 424

Query:   133 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 192
              +  P+V    + T +      G +  +K      +K VN  A    T LH AA  G+ +
Sbjct:   425 REASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTN 483

Query:   193 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 252
              V+LLL+ +AN +  T           AG TPLH AA  G+++    LL + AS+  +  
Sbjct:   484 MVKLLLENNANPNLATT----------AGHTPLHIAAREGHVETALALLEKEASQTCMTK 533

Query:   253 NGWLPLDVARMWGRHWLEPLL 273
              G+ PL VA  +G+  +  LL
Sbjct:   534 KGFTPLHVAAKYGKVRMAELL 554

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-7450 tnks "tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 8.2e-17, P = 8.2e-17
 Identities = 89/275 (32%), Positives = 124/275 (45%)

Query:     2 GNSFGCSASG--ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE 59
             G S GC  SG    L  A R+GD    K L+D     AK    G  ++PLHFAA  G  +
Sbjct:   119 GGS-GCGTSGAFRELFEACRNGDVSRVKRLVDSVNVNAK-DMAGRKSTPLHFAAGFGRKD 176

Query:    60 IVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119
             +V  LL+ GA+V++R+  G   L  AC +GH EVV  LL    +    D  +  T LH A
Sbjct:   177 VVEHLLQTGANVHARDDGGLIPLHNACSFGHAEVVSLLLCQGADPNARDNWN-YTPLHEA 235

Query:   120 AVNGHVR-CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 178
             A+ G +  CI L+     P++     NT       DG S     D SA +    +     
Sbjct:   236 AIKGKIDVCIVLLQHGADPNI----RNT-------DGKSALDLADPSAKAVLTGEYKKDE 284

Query:   179 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 238
             +  L  A        + LL  L+ N  A      TS  ++   STPLH AA    ++  Q
Sbjct:   285 L--LEAARSGNEEKLMALLTPLNVNCHASDGRKSTSQKML---STPLHLAAGYNRVRIVQ 339

Query:   239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
             +LL  GA   + +  G +PL  A  +G + +  LL
Sbjct:   340 LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 374

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 83/261 (31%), Positives = 125/261 (47%)

Query:    15 VSAARDGDFVEA-KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
             +  A  GD ++  ++LL  N  +    T   L +PLH AA  GH+ +  +LL+ GA  NS
Sbjct:   303 IHMAAQGDHLDCVRLLLQYNAEIDDI-TLDHL-TPLHVAAHCGHHRVAKVLLDKGAKPNS 360

Query:    74 RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVV 132
             R   G T L  AC+  H  V++ LL    ++      SG T LH A+  GH+  ++ L+ 
Sbjct:   361 RALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTE-SGLTPLHVASFMGHLPIVKNLLQ 419

Query:   133 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 192
                 P+V    + T +      G +  +K      +K VN  A    T LH AA  G+ +
Sbjct:   420 RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTN 478

Query:   193 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 252
              V+LLL+ +AN +  T           AG TPLH AA  G ++    LL + AS+  +  
Sbjct:   479 MVKLLLENNANPNLATT----------AGHTPLHIAAREGQVETALALLEKEASQACMTK 528

Query:   253 NGWLPLDVARMWGRHWLEPLL 273
              G+ PL VA  +G+  +  LL
Sbjct:   529 KGFTPLHVAAKYGKVRVAELL 549

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PRC8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 4.9e-16, P = 4.9e-16
 Identities = 83/261 (31%), Positives = 125/261 (47%)

Query:    15 VSAARDGDFVEA-KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
             +  A  GD ++  ++LL  N  +    T   L +PLH AA  GH+ +  +LL+ GA  NS
Sbjct:   313 IHMAAQGDHLDCVRLLLQYNAEIDDI-TLDHL-TPLHVAAHCGHHRVAKVLLDKGAKPNS 370

Query:    74 RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVV 132
             R   G T L  AC+  H  V++ LL    ++      SG T LH A+  GH+  ++ L+ 
Sbjct:   371 RALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTE-SGLTPLHVASFMGHLPIVKNLLQ 429

Query:   133 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 192
                 P+V    + T +      G +  +K      +K VN  A    T LH AA  G+ +
Sbjct:   430 RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTN 488

Query:   193 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 252
              V+LLL+ +AN +  T           AG TPLH AA  G ++    LL + AS+  +  
Sbjct:   489 MVKLLLENNANPNLATT----------AGHTPLHIAAREGQVETALALLEKEASQACMTK 538

Query:   253 NGWLPLDVARMWGRHWLEPLL 273
              G+ PL VA  +G+  +  LL
Sbjct:   539 KGFTPLHVAAKYGKVRVAELL 559

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6KAE5	XB32_ORYSJ	6, ., 3, ., 2, ., -	0.5306	0.8927	0.9233	yes	no
Q4FE45	XB33_ARATH	6, ., 3, ., 2, ., -	0.7519	0.9785	0.9785	yes	no
Q337A0	XB33_ORYSJ	6, ., 3, ., 2, ., -	0.6532	0.9961	0.9826	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007371001 SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (518 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-26
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-22
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-15
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-09
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-08
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	8e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
smart00248	30	smart00248, ANK, ankyrin repeats	4e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	7e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  104 bits (262), Expect = 8e-27
 Identities = 56/170 (32%), Positives = 75/170 (44%), Gaps = 44/170 (25%)

Query: 72  NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
           N+R+  G+T L  A   GH EVV+ LL    +V   D   GRT LH AA NGH+  ++L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKLL 59

Query: 132 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
                                     ++   D       VN     G T LH+AA NG  
Sbjct: 60  --------------------------LEKGAD-------VNARDKDGNTPLHLAARNGNL 86

Query: 192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241
           D V+LLL   A+V+A              G TPLH AA  G+L+  ++LL
Sbjct: 87  DVVKLLLKHGADVNARDKD----------GRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  102 bits (257), Expect = 3e-26
 Identities = 52/130 (40%), Positives = 70/130 (53%), Gaps = 7/130 (5%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVA 62
           +  G +     L  AA +G     K+LL+    +      G   +PLH AA  GH EIV 
Sbjct: 4   DEDGRTP----LHLAASNGHLEVVKLLLENGADVNAKDNDG--RTPLHLAAKNGHLEIVK 57

Query: 63  LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN 122
           LLLE GADVN+R+  G T L  A R G+ +VV+ LL    +V   D   GRT LH AA N
Sbjct: 58  LLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK-DGRTPLHLAAKN 116

Query: 123 GHVRCIRLVV 132
           GH+  ++L++
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 91.2 bits (227), Expect = 2e-22
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  AA++G+    K+LL+    +    T    ++ LH AA  G+ EIV LLLE+GADVN+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT----DTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
           ++  G TAL  A R G+ E+V+ LL    ++   D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 90.4 bits (225), Expect = 3e-22
 Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 49  LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
           LH AA  G+ E+V LLLE GADVN  +    TAL  A R G+ E+V+ LL    +V   D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 109 YLSGRTALHFAAVNGHVRCIRL 130
              G TALH AA NG++  ++L
Sbjct: 59  K-DGNTALHLAARNGNLEIVKL 79

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.5 bits (225), Expect = 8e-22
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 43/155 (27%)

Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           GRT LH AA NGH+  ++L++                          ++  D       V
Sbjct: 7   GRTPLHLAASNGHLEVVKLLL--------------------------ENGAD-------V 33

Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
           N   + G T LH+AA NG+ + V+LLL+  A+V+A              G+TPLH AA  
Sbjct: 34  NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD----------GNTPLHLAARN 83

Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
           GNL   ++LL  GA   + + +G  PL +A   G 
Sbjct: 84  GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
           N   + G T LH+AA NG+ + V+LLL+  A+V+A              G TPLH AA  
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND----------GRTPLHLAAKN 50

Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           G+L+  ++LL +GA   + + +G  PL +A   G  
Sbjct: 51  GHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 36/126 (28%)

Query: 82  LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
           L  A + G+ E+V+ LL    +V   D     TALH AA NG++  ++L++         
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLL--------- 48

Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
                            +   D       VN     G TALH+AA NG  + V+LLL+  
Sbjct: 49  -----------------EHGAD-------VNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84

Query: 202 ANVSAV 207
           A+++  
Sbjct: 85  ADINLK 90

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLL 98
           + LH AA  G  E+V  LLE G D+N  +  G TAL  A   G+ EV++ LL
Sbjct: 2  RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 45/130 (34%)

Query: 116 LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 175
           LH AA NG++  ++L++                  ++G   ++                 
Sbjct: 1   LHLAAKNGNLELVKLLL------------------EKGADVNLGDTD------------- 29

Query: 176 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 235
               TALH+AA NG  + V+LLL+  A+V+A              G+T LH AA  GNL+
Sbjct: 30  ----TALHLAARNGNLEIVKLLLEHGADVNAKDKD----------GNTALHLAARNGNLE 75

Query: 236 CCQVLLSRGA 245
             ++LL  GA
Sbjct: 76  IVKLLLEHGA 85

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 41/230 (17%)

Query: 27  KMLLDCNPCLAKYSTFGGLNS-PLHFAAAKGHN-----EIVALLLENGADVNSRNYCGQT 80
           K+LLD    +   +     NS PLH+ +   +N     EIV LLLE GA+VN+ +  G T
Sbjct: 52  KILLDNGADINSSTKN---NSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT 108

Query: 81  ALMQA--CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS 138
            L+ A   +   + +V+ LL    NV       G   LH       +   +         
Sbjct: 109 PLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHLY-----LESNK--------- 153

Query: 139 VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV--NKAADGGITALHMAALNGYFDCVQL 196
           +  +++   I  D+G   + K++ +   LS  V  N     G T LH A  N   + V+ 
Sbjct: 154 IDLKILKLLI--DKGVDINAKNRVN-YLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKY 210

Query: 197 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246
           LLDL AN + V  +          G TPLH A    N +  ++LL+ G S
Sbjct: 211 LLDLGANPNLVNKY----------GDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 182 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241
           LH+AA NG  + V+LLL+  A+V+             G   T LH AA  GNL+  ++LL
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL------------GDTDTALHLAARNGNLEIVKLLL 48

Query: 242 SRGASRMSLNCNGWLPLDVARMWGRHWL 269
             GA   + + +G   L +A   G   +
Sbjct: 49  EHGADVNAKDKDGNTALHLAARNGNLEI 76

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 66.8 bits (162), Expect = 2e-12
 Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 42/173 (24%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH-----WEVVQTLLL 99
              PLH AA+KG ++IV LLL +GADVN+++  G T L  A   G+      EV + LL 
Sbjct: 73  GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE 132

Query: 100 FR---CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS 156
                      D   G T LH+AA+NG    + L     + +                G+
Sbjct: 133 AGADLDVNNLRDE-DGNTPLHWAALNGDADIVEL----LLEA----------------GA 171

Query: 157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTF 209
              S+                G+TAL  AA NG  + V+LLLD   ++S + F
Sbjct: 172 DPNSR-------------NSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 54/201 (26%)

Query: 26  AKMLLDCNPCLAKYSTFGGLNSPLHFAAAK--GHNEIVALLLENGADVNSRNYCGQTALM 83
            K+LL+    +      G   +PL +A +K      IV  LL+NGA+VN +N  G+  L 
Sbjct: 89  VKLLLEYGANVNAPDNNG--ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLH 146

Query: 84  QACRYGHW--EVVQTLLLFRCNV---TRADYL------------SGRTALHFAAVNGHVR 126
                     ++++ L+    ++    R +YL             G T LH+A  N +  
Sbjct: 147 LYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP- 205

Query: 127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 186
                          E +   ++                 L    N     G T LH+A 
Sbjct: 206 ---------------EFVKYLLD-----------------LGANPNLVNKYGDTPLHIAI 233

Query: 187 LNGYFDCVQLLLDLHANVSAV 207
           LN   +  +LLL+   ++  +
Sbjct: 234 LNNNKEIFKLLLNNGPSIKTI 254

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 59.3 bits (143), Expect = 3e-09
 Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 48/251 (19%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA-AKGHNEIVALLLENGADVN 72
           L+ A R+ D   + +L D    +         N+PLH A+ A   + +V  LLE GADVN
Sbjct: 244 LLKAIRNEDLETSLLLYDAGFSVNSIDDCK--NTPLHHASQAPSLSRLVPKLLERGADVN 301

Query: 73  SRNYCGQTALMQACRYGH-WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
           ++N  G+T L    + G+  E ++TL++   +V  AD L   T LH A+     + I + 
Sbjct: 302 AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY-ITPLHQASTLDRNKDIVIT 360

Query: 132 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
           + +                  G   + +  CD+               T +H AA+    
Sbjct: 361 LLEL-----------------GANVNARDYCDK---------------TPIHYAAVRNNV 388

Query: 192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN-LKCCQVLLSRGASRMSL 250
             +  LLD  A++ A++   GT+          LHFA CG N     + L+ RGA+  S 
Sbjct: 389 VIINTLLDYGADIEALSQKIGTA----------LHFALCGTNPYMSVKTLIDRGANVNSK 438

Query: 251 NCNGWLPLDVA 261
           N +   PL  A
Sbjct: 439 NKDLSTPLHYA 449

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 64  LLENG-ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119
           LLE+G  D+N+ +  G T L  A +YG  E+VQ LL    ++   D   G TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDS-DGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 20/30 (66%), Positives = 24/30 (80%)

Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRN 75
          N+PLH AA  GH E+V LLLE GADVN+R+
Sbjct: 3  NTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY-GHWEVVQTLLLFRCNV 104
           NSPLH A    +  IV +LLENGA  ++R+ CG T L  +  Y   +++++ LL    +V
Sbjct: 202 NSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV 261

Query: 105 TRADYLSGRTALHFA 119
               Y+ G TALH +
Sbjct: 262 NAKSYILGLTALHSS 276

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 29 LLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQA 85
          LL+  P     +   G N+PLH AA  G  E+V  LL+ G D+N R+  G TAL  A
Sbjct: 1  LLEHGPIDLNATDGNG-NTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 58/261 (22%), Positives = 86/261 (32%), Gaps = 51/261 (19%)

Query: 56  GHNEIVALLLENGA----DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
             + ++  LL   +    + + +       L              L L       A  L 
Sbjct: 15  FLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASL--SELLLKLIVDRHLAARDLD 72

Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           GR  LH AA  G  + ++L++A                                     V
Sbjct: 73  GRLPLHSAASKGDDKIVKLLLASGAD---------------------------------V 99

Query: 172 NKAADGGITALHMAALNG-----YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
           N     G T LH+AALNG       +  +LLL+  A++           D  G   TPLH
Sbjct: 100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN-----LRDEDGN--TPLH 152

Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHP 286
           +AA  G+    ++LL  GA   S N  G   LD A   GR  L  LL      +      
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Query: 287 SNYLSLPLLSVLNVARECGLL 307
              ++   +S  N+     L+
Sbjct: 213 LEGVANANVSKRNILNLTSLI 233

Length = 235

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 40/193 (20%)

Query: 52  AAAKGHNEIVALLLENGA--DVNSRNYCGQTALMQACRYG-HWEVVQTLLLFRCNVTRAD 108
           AA +G    V   LE     ++N  +  G++AL  A     + E+ + LL   C      
Sbjct: 24  AAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGA--- 80

Query: 109 YLSGRTALHFAAVNGHVR----CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              G T LH A    +V      +  ++A F  S P E+ N Q               + 
Sbjct: 81  --VGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQ------------YTSEF 125

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA----VTFHYGTSMDLIGA 220
           +            GITALH+AA    ++ V+LLL+  A+V A      F     +D    
Sbjct: 126 TP-----------GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYH 174

Query: 221 GSTPLHFAACGGN 233
           G +PL+ AAC G+
Sbjct: 175 GESPLNAAACLGS 187

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 49/240 (20%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           +P+H+AA +G+ ++V LLL  GADVN       + L  A    + + ++ ++  R N+ +
Sbjct: 180 TPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK 239

Query: 107 AD------------------YLSG----------RTALHFAAVNGHVRCIRLVVADFVPS 138
            D                  Y +G           T LH A+    +   RLV       
Sbjct: 240 NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLS--RLVPKLLERG 297

Query: 139 VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG------ITALHMAA-LNGYF 191
                 N  I+G+       K+  D   +   +   AD        IT LH A+ L+   
Sbjct: 298 ADVNAKN--IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNK 355

Query: 192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 251
           D V  LL+L ANV+A  +             TP+H+AA   N+     LL  GA   +L+
Sbjct: 356 DIVITLLELGANVNARDYC----------DKTPIHYAAVRNNVVIINTLLDYGADIEALS 405

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 65/283 (22%), Positives = 109/283 (38%), Gaps = 64/283 (22%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L+ A R GD    ++ +     +   +T   +  PL  A   G ++I+ LL++NG D   
Sbjct: 39  LIDAIRSGDAKIVELFIKHGADINHINT--KIPHPLLTAIKIGAHDIIKLLIDNGVDT-- 94

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
                 + L   C     ++++T+L    +V   D    +T LH+A   G +        
Sbjct: 95  ------SILPIPCIEK--DMIKTILDCGIDVNIKDAEL-KTFLHYAIKKGDL-------- 137

Query: 134 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 193
                   E +    E    D                VN   D G   +H+A  + +FD 
Sbjct: 138 --------ESIKMLFEY-GAD----------------VNIEDDNGCYPIHIAIKHNFFDI 172

Query: 194 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 253
           ++LLL+  A  +    +          G +PLH AA  G+  C ++L+  G + +   C 
Sbjct: 173 IKLLLEKGAYANVKDNN----------GESPLHNAAEYGDYACIKLLIDHG-NHIMNKCK 221

Query: 254 -GWLPLDVARMWGRHWLEPLLAPSS------DAVMPRFHPSNY 289
            G+ PL  A +  R  +E L+  +S      D   P  H  N 
Sbjct: 222 NGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINP 264

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 34/215 (15%)

Query: 58  NEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALH 117
            +++  +L+ G DVN ++   +T L  A + G  E ++ L  +  +V   D  +G   +H
Sbjct: 104 KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED-DNGCYPIH 162

Query: 118 FAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG------DRGDGSSVKSKCDQSALSKFV 171
            A  +     I+L++          V +   E       + GD + +K   D    +  +
Sbjct: 163 IAIKHNFFDIIKLLLEK---GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG--NHIM 217

Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           NK    G T LH A ++     ++LL++  + N   +             GSTPLH A  
Sbjct: 218 NK-CKNGFTPLHNAIIHNR-SAIELLINNASINDQDID------------GSTPLHHAI- 262

Query: 231 GGNLKC----CQVLLSRGASRMSLNCNGWLPLDVA 261
             N  C      +LL   A     +  G  P+D A
Sbjct: 263 --NPPCDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 53  AAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSG 112
           AA G      +LL  GAD N R+Y G+T L  AC  GH +VV+ LL F  + T  D   G
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK-DG 148

Query: 113 RTALHFAAVNG 123
           +T L  A  NG
Sbjct: 149 KTPLELAEENG 159

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 56/235 (23%), Positives = 85/235 (36%), Gaps = 35/235 (14%)

Query: 45  LNSPLHFAAAKGHN---EIVALLLENGADVNSRNYCGQTALMQACRYGH-WEVVQTLLLF 100
             +PLH           +IV LLLE GADVN+   CG T L          +V++ L+  
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA 106

Query: 101 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
             +V   D   GRT LH                    ++  +V+   +   +G   +   
Sbjct: 107 GADVNAKD-KVGRTPLHVYLSG--------------FNINPKVIRLLLR--KGADVNALD 149

Query: 161 KCDQSALSKFV-NKAADGGITALHMAALNGYF---DCVQLLLDLHAN--------VSAVT 208
               + L+  + ++ A+  +  L + A    +   D  + LL  H          V  + 
Sbjct: 150 LYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELI 209

Query: 209 FHYGTSMDLIGAGSTPLHFAACGGNLKCCQV--LLSRGASRMSLNCNGWLPLDVA 261
                       G+TPLH  A G + K   V  LL  G S  + N  G  PL  A
Sbjct: 210 RAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
           TALH AA++G  + V+ LL+   +++               G+T LH AA  GNL+  ++
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTD----------EDGNTALHIAAENGNLEVLKL 52

Query: 240 LL 241
           LL
Sbjct: 53  LL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 53/207 (25%)

Query: 4   SFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVAL 63
           S G +A  E L+ A  D D  ++K                   +PLH AA+KG+ + V +
Sbjct: 534 STGNAALLEELLKAKLDPDIGDSKG-----------------RTPLHIAASKGYEDCVLV 576

Query: 64  LLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG 123
           LL++  +V+ R+  G TAL  A    H ++ + L  F    + +D  +    L  AA   
Sbjct: 577 LLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHF---ASISDPHAAGDLLCTAAKRN 633

Query: 124 HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183
            +  ++            E++          G +V S+  Q             G TAL 
Sbjct: 634 DLTAMK------------ELLKQ--------GLNVDSEDHQ-------------GATALQ 660

Query: 184 MAALNGYFDCVQLLLDLHANVSAVTFH 210
           +A    + D V+LL+   A+V      
Sbjct: 661 VAMAEDHVDMVRLLIMNGADVDKANTD 687

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV-TRADYLSGRTALHFA 119
           V  LL  G  +N ++  G T L  A    + E V+ LL    N      Y  G T LH A
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKY--GDTPLHIA 232

Query: 120 AVNGHVRCIRLVVADFVPSVPFEVMNTQIE 149
            +N +    +L++ +  PS+  + +   + 
Sbjct: 233 ILNNNKEIFKLLL-NNGPSI--KTIIETLL 259

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.2 bits (122), Expect = 1e-06
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 35/164 (21%)

Query: 46  NSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
            +PLH A+    N +IV  LLE GA+VN+R+YC +T +  A    +  ++ TLL +  ++
Sbjct: 342 ITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
                  G TALHFA    +               P+  + T I  DR  G++V SK   
Sbjct: 402 EALSQKIG-TALHFALCGTN---------------PYMSVKTLI--DR--GANVNSK--- 438

Query: 165 SALSKFVNKAADGGITALHMAALNG-YFDCVQLLLDLHANVSAV 207
              +K ++       T LH A       D +++LLD  A+V+A+
Sbjct: 439 ---NKDLS-------TPLHYACKKNCKLDVIEMLLDNGADVNAI 472

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVT 208
           G T LH+AA NG+ + V+LLL+  A+V+A  
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 51/207 (24%), Positives = 81/207 (39%), Gaps = 41/207 (19%)

Query: 59  EIVALLLENGADVNSRNYCGQTALMQACRYG---HWEVVQTLLLFRCNVTRADYLSGRTA 115
           +++ LL++ GADVN+++  G+T L      G   + +V++ LL    +V   D L G T 
Sbjct: 98  DVIKLLIKAGADVNAKDKVGRTPL-HVYLSGFNINPKVIRLLLRKGADVNALD-LYGMTP 155

Query: 116 LH----FAAVNGHVRCIRLVVA--------DFVPSVPFEVMNTQIEGDRGDGSS-VKSKC 162
           L         N  V  +RL++         D              +         +++ C
Sbjct: 156 LAVLLKSRNAN--VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGC 213

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD--LHANVSA-VTFHYGTSMDLIG 219
           D +A     N       T LH  A      C + L+   L A +S      YG       
Sbjct: 214 DPAATDMLGN-------TPLHSMAT--GSSCKRSLVLPLLIAGISINARNRYGQ------ 258

Query: 220 AGSTPLHFAACGGNLKCCQVLLSRGAS 246
              TPLH+AA   N + C+ L++ GA 
Sbjct: 259 ---TPLHYAAVFNNPRACRRLIALGAD 282

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 32/177 (18%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A + GD    KML +    +      G    P+H A      +I+ LLLE GA  N 
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNG--CYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 74  RNYCGQTALMQACRYGHWEVVQTLL------LFRCNVTRADYLSGRTALHFAAVNGHVRC 127
           ++  G++ L  A  YG +  ++ L+      + +C        +G T LH A +  H R 
Sbjct: 186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK-------NGFTPLHNAII--HNRS 236

Query: 128 IRLVVADFVPSVPFEVMNTQIEGDRGDGSS-----VKSKCDQSALSKFVNKAADGGI 179
                      +   + N  I     DGS+     +   CD   +   +   AD  I
Sbjct: 237 A----------IELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI 283

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           G G+TPLH AA  G L+  Q LL  G      + +G   LD+A
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 46  NSPLHFAAAKG--HNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCN 103
           N+PLH  A        +V  LL  G  +N+RN  GQT L  A  + +    + L+    +
Sbjct: 223 NTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD 282

Query: 104 VTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
           +       G T L     N + R +R  +A
Sbjct: 283 INAVSS-DGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 34/169 (20%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
            N+ LH+A       +  LLL  GA+VN  +    + L  A ++ +  +V  LL    + 
Sbjct: 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS- 226

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           T A    G T LH +       C             ++++   +E     G  V +K   
Sbjct: 227 TDARDKCGNTPLHISV----GYCKD-----------YDILKLLLE----HGVDVNAK--S 265

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 213
             L          G+TALH +  +     ++LLL+  A+++++  +  T
Sbjct: 266 YIL----------GLTALHSSIKSE--RKLKLLLEYGADINSLNSYKLT 302

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLN 251
           G+TPLH AA  G+L+  ++LL  GA   + +
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 51/223 (22%), Positives = 82/223 (36%), Gaps = 49/223 (21%)

Query: 26  AKMLLDC--NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALM 83
           A+ LLD   NP    Y       SP+  A     +E + LL+++GA  + +    ++ L 
Sbjct: 18  ARRLLDIGINPNFEIYDGI----SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELH 73

Query: 84  QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEV 143
            A   G  + V+ LL          Y  G T LH A +   +  ++L++A          
Sbjct: 74  DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA---------- 123

Query: 144 MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 203
                           +  D     KF         + LH+A + G    ++LL+D    
Sbjct: 124 --------------RGADPDIPNTDKF---------SPLHLAVMMGDIKGIELLID---- 156

Query: 204 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246
                 H          G TPL  A   G++  C++LL  GA+
Sbjct: 157 ------HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN 193

Length = 413

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 46 NSPLHFAAAKGHNEIVALLLENGADVN 72
           +PLH AA  G+ E+V LLL+ GAD+N
Sbjct: 3  RTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 46 NSPLHFAAAKGHNEIVALLLENGADVN 72
          N+PLH AA  G+ E+V LLLE+GAD+N
Sbjct: 3  NTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           L   A  GD V A++LL    D N       T      PLH A A GH ++V +LLE GA
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRT------PLHIACANGHVQVVRVLLEFGA 139

Query: 70  DVNSRNYCGQTALMQACRYGHWEVVQTLL 98
           D    +  G+T L  A   G  EVVQ L 
Sbjct: 140 DPTLLDKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 33/87 (37%)

Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           GRTALH AA++G +  ++ ++   V                                  +
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD---------------------------------I 27

Query: 172 NKAADGGITALHMAALNGYFDCVQLLL 198
           N+  + G TALH+AA NG  + ++LLL
Sbjct: 28  NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
           G T L  A R GH EVV+ LL    +V   D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSA 206
           G T LH+AA NG  + V+LLLD  A+++A
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSA 206
           G T LH+AA NG  + V+LLL+  A+++A
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 10/52 (19%)

Query: 177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228
            G T LH+AA  G  + VQ LL    +++               G T L  A
Sbjct: 15  NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD----------GLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 36/138 (26%), Positives = 48/138 (34%), Gaps = 27/138 (19%)

Query: 11  GERLVSAARDG--DFVEAKMLL-------DCNPCLAKYSTFGGLN---SPLHFAAAKGHN 58
           G+ L+ A      D VEA +L             LA            + LH AA + + 
Sbjct: 82  GDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNY 141

Query: 59  EIVALLLENGADVNSRNYCG--QTALMQACRY------------GHWEVVQTLLLFRCNV 104
           EIV LLLE GA V +R        +      Y            G   +V  L     ++
Sbjct: 142 EIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI 201

Query: 105 TRADYLSGRTALHFAAVN 122
             AD L G T LH   + 
Sbjct: 202 LTADSL-GNTLLHLLVME 218

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 166 ALSKFVNKAADGGITALHMAALNGY---FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
            L   ++     G T LH  +L         +  LL        +             G 
Sbjct: 70  ELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI 129

Query: 223 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 254
           T LH AA   N +  ++LL RGA  +     G
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGA-SVPARACG 160

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           SPLH A   G  + + LL+++ A ++  + CG T L+ A   G   + + LL    N+  
Sbjct: 137 SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI-- 194

Query: 107 ADYLSGR---TALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMN 145
            DY        AL +A  N  +  +RL +   AD   ++ F +  
Sbjct: 195 -DYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD--CNIMFMIEG 236

Length = 413

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 221 GSTPLHFAACGGNLKCCQVLLSRGAS 246
           G TPLH AA  GNL+  ++LL +GA 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 55/249 (22%), Positives = 89/249 (35%), Gaps = 60/249 (24%)

Query: 33  NPCLAKYSTFGGLNSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQTALMQACRYGH- 90
              L  YS          + A +  N ++V +LL+NGAD+NS      T L       + 
Sbjct: 24  EDDLNDYSYK--KPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYN 81

Query: 91  ----WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT 146
                E+V+ LL +  NV  A   +G T L +A                           
Sbjct: 82  LTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAIS------------------------- 115

Query: 147 QIEGDRGDGSSVKSKCDQSALSKFVNKAAD------GGITALHMAALNGY--FDCVQLLL 198
                       K     S +   ++  A+       G   LH+   +       ++LL+
Sbjct: 116 ------------KKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLI 163

Query: 199 DLHANVSAVT-----FHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 252
           D   +++A         YG  +++    G TPLH+A    N +  + LL  GA+   +N 
Sbjct: 164 DKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNK 223

Query: 253 NGWLPLDVA 261
            G  PL +A
Sbjct: 224 YGDTPLHIA 232

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 45  LNSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQTALMQACRY 88
           L++PLH+A  K    +++ +LL+NGADVN+ N   Q  L+ A  Y
Sbjct: 442 LSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY 486

Length = 682

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 77  CGQTALMQACRYGHWEVVQTLLLFRCNV 104
            G T L  A R G+ E+V+ LL    ++
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.82
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.67
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.66
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.43
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.34
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.12
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.95
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.91
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.81
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.75
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.67
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.66
PF13606	30	Ank_3: Ankyrin repeat	98.65
PF13606	30	Ank_3: Ankyrin repeat	98.61
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.61
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.56
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.56
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.49
KOG0522	560	consensus Ankyrin repeat protein [General function	98.44
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.43
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.39
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.38
KOG0522	560	consensus Ankyrin repeat protein [General function	98.35
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.33
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.16
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.14
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.12
KOG0511	516	consensus Ankyrin repeat protein [General function	98.09
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.92
KOG0511	516	consensus Ankyrin repeat protein [General function	97.8
KOG2384	223	consensus Major histocompatibility complex protein	97.78
KOG2384	223	consensus Major histocompatibility complex protein	97.77
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.68
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.67
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	97.53
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	97.2
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.17
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.16
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	97.16
PHA02929	238	N1R/p28-like protein; Provisional	97.12
KOG2505	591	consensus Ankyrin repeat protein [General function	97.04
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	97.02
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	96.98
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	96.98
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	96.77
PF14634	44	zf-RING_5: zinc-RING finger domain	96.75
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	96.75
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	96.73
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	96.71
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	96.62
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.61
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.59
KOG2505	591	consensus Ankyrin repeat protein [General function	96.5
PHA02926	242	zinc finger-like protein; Provisional	96.5
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	96.38
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.29
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	95.95
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	95.66
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	95.64
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	95.63
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.5
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.47
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.46
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.42
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	95.29
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	95.04
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	94.99
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.77
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	94.77
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	93.84
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	93.61
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	93.61
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	93.51
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.29
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	93.28
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	92.92
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	92.56
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	92.17
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.1
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	91.9
PHA02929	238	N1R/p28-like protein; Provisional	91.81
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	91.65
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	91.48
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	91.46
PF14634	44	zf-RING_5: zinc-RING finger domain	91.24
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	91.07
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	90.79
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	90.76
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	90.22
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	89.67
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	88.98
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	88.77
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	88.76
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	88.72
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.64
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	87.23
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	87.22
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	85.93
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	85.74
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	84.54
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	84.49
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	84.4
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	84.27
KOG4739	233	consensus Uncharacterized protein involved in syna	83.69
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	83.26
KOG0825	1134	consensus PHD Zn-finger protein [General function	81.96
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	80.71

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.8e-36  Score=295.49  Aligned_cols=214  Identities=20%  Similarity=0.195  Sum_probs=185.5

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ..+.++||+|++.|+.++++.|++.|++.+..  +  +.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+.
T Consensus        28 ~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         28 VHGHSALYYAIADNNVRLVCTLLNAGALKNLL--E--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--C--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            44678999999999999999999999876543  2  3899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCC-CcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSG-RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  166 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G-~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      .|+.++|++|+++|++++..+. .| .||||+|+..|+.+++++|++++..                             
T Consensus       104 ~g~~eivk~Ll~~gadin~~~~-~g~~TpL~~Aa~~g~~eivk~LL~~~~~-----------------------------  153 (284)
T PHA02791        104 SGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPS-----------------------------  153 (284)
T ss_pred             cCCHHHHHHHHHCCCCcCccCC-CCCcHHHHHHHHcCCHHHHHHHHhcCCc-----------------------------
Confidence            9999999999999999988775 56 5899999999999999999975321                             


Q ss_pred             HHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCch-hHHHhhCCCHHHHHHHHHCC
Q 010335          167 LSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       167 ~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~Tp-Lh~Aa~~g~~eivk~LL~~G  244 (513)
                            ..| ..|.||||+|+.+|+.++|++|+++|++++..+..          |.|| ||+|+..|+.++|++|+++|
T Consensus       154 ------~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~----------g~t~~L~~Aa~~~~~e~v~lLl~~G  217 (284)
T PHA02791        154 ------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL----------LFIPDIKLAIDNKDLEMLQALFKYD  217 (284)
T ss_pred             ------ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCC----------CCChHHHHHHHcCCHHHHHHHHHCC
Confidence                  011 24789999999999999999999999999998866          7776 99999999999999999999


Q ss_pred             CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      ++++.+|..| ++|      ++.+++++|+++-.
T Consensus       218 a~in~~~~~~-~~l------~~~e~~~~ll~~~~  244 (284)
T PHA02791        218 INIYSVNLEN-VLL------DDAEIAKMIIEKHV  244 (284)
T ss_pred             CCCccCcccC-ccC------CCHHHHHHHHHhhh
Confidence            9999999855 566      77788888876543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-35  Score=310.17  Aligned_cols=224  Identities=24%  Similarity=0.243  Sum_probs=204.9

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      ..+|+.|++.|+++++++|++.|++++.....  |.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYD--GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            46899999999999999999999988765444  4999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF  170 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      .++|++|++.|+......+..|.||||+|+..|+.+++++|++.|.+                                 
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad---------------------------------  127 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD---------------------------------  127 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC---------------------------------
Confidence            99999999999987665555899999999999999999999988764                                 


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCc
Q 010335          171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL  250 (513)
Q Consensus       171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~  250 (513)
                      ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++..
T Consensus       128 ~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~----------g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~  197 (413)
T PHA02875        128 PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCC----------GCTPLIIAMAKGDIAICKMLLDSGANIDYF  197 (413)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHhCCCCCCcC
Confidence            5567778999999999999999999999999999999876          999999999999999999999999999999


Q ss_pred             CCCCC-cHHHHHHHcCccchhhhcCCCCCC
Q 010335          251 NCNGW-LPLDVARMWGRHWLEPLLAPSSDA  279 (513)
Q Consensus       251 d~~G~-TpL~~A~~~g~~~iv~lL~~~~~~  279 (513)
                      +..|. ||+|+|+..|+.+++++|.+.+..
T Consensus       198 ~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad  227 (413)
T PHA02875        198 GKNGCVAALCYAIENNKIDIVRLFIKRGAD  227 (413)
T ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHCCcC
Confidence            98874 899999999999999888775543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-36  Score=261.14  Aligned_cols=205  Identities=27%  Similarity=0.342  Sum_probs=187.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCC-CCccccCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           13 RLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLL-ENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        13 ~L~~Aa~~G~~e~vk~LL~~~~-~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL-~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      ..+.+.+......++.|++..+ .++.. ++.+|+||||||+..|+.+||++|+ +.+..+|.+|..|+||||.|+..|+
T Consensus         6 ~~~~~~~~~~~~kveel~~s~~kSL~~r-~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    6 LGKAICENCEEFKVEELIQSDPKSLNAR-DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             hHHHHHhhchHHHHHHHHhcChhhhhcc-ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            3677777888888999999988 44444 4444599999999999999999999 5688899999999999999999999


Q ss_pred             HHHHHHHHhc-CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           91 WEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        91 ~eiVk~LL~~-ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      .|+|+.|+.+ |++++...+ .|.|+||||+..|..+++++|+++++.                                
T Consensus        85 ~evVk~Ll~r~~advna~tn-~G~T~LHyAagK~r~eIaqlLle~ga~--------------------------------  131 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVNATTN-GGQTCLHYAAGKGRLEIAQLLLEKGAL--------------------------------  131 (226)
T ss_pred             HHHHHHHhcCCCCCcceecC-CCcceehhhhcCChhhHHHHHHhcCCC--------------------------------
Confidence            9999999998 999999886 999999999999999999999988754                                


Q ss_pred             hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335          170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  249 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~  249 (513)
                       ++.+|..|.||||.||.-|.++++++|+..|+.+|..|..          |+||||.|...|+.++..+|+++||+++.
T Consensus       132 -i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~----------G~TpL~~al~e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  132 -IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKY----------GFTPLHHALAEGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             -CcccccccCchhHHHHhccchhhHHHHHhcCCCCCccccc----------CccHHHHHHhccCchHHHHHHHhccceee
Confidence             7889999999999999999999999999999999999988          99999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHH
Q 010335          250 LNCNGWLPLDVARM  263 (513)
Q Consensus       250 ~d~~G~TpL~~A~~  263 (513)
                      .|+.| ||+.+|.-
T Consensus       201 edke~-t~~~~a~~  213 (226)
T KOG4412|consen  201 EDKEG-TALRIACN  213 (226)
T ss_pred             ccccC-chHHHHHH
Confidence            99998 99887753

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-34  Score=284.93  Aligned_cols=213  Identities=19%  Similarity=0.114  Sum_probs=185.9

Q ss_pred             cCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHh
Q 010335           20 DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLL   99 (513)
Q Consensus        20 ~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~   99 (513)
                      .++.+++++|+++++..    .+..|+||||+|+..|+.+++++|++.|++++..+  |.||||+|+..|+.++|++|+.
T Consensus         9 ~~~~~~~~~Lis~~a~~----~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK----ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCCCC----CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHH
Confidence            57899999999998753    34445999999999999999999999999998875  7899999999999999999999


Q ss_pred             cCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCC
Q 010335          100 FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI  179 (513)
Q Consensus       100 ~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~  179 (513)
                      +|++++..+. .|+||||+|+..|+.+++++|++.+..                                 ++..+..|+
T Consensus        83 ~Gadvn~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~gad---------------------------------in~~~~~g~  128 (284)
T PHA02791         83 SGMDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWR---------------------------------LMFYGKTGW  128 (284)
T ss_pred             CCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC---------------------------------cCccCCCCC
Confidence            9999998886 899999999999999999999987654                                 555666674


Q ss_pred             -cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH-
Q 010335          180 -TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP-  257 (513)
Q Consensus       180 -TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp-  257 (513)
                       ||||+|+..|+.++|++|++++.+..  +..         .|.||||+|+..|+.++|++|+++|++++.+|..|.|| 
T Consensus       129 ~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~~---------~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~  197 (284)
T PHA02791        129 KTSFYHAVMLNDVSIVSYFLSEIPSTF--DLA---------ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD  197 (284)
T ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCccc--ccc---------cCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChH
Confidence             89999999999999999999876542  211         28999999999999999999999999999999999987 


Q ss_pred             HHHHHHcCccchhhhcCCC-CCCCCCC
Q 010335          258 LDVARMWGRHWLEPLLAPS-SDAVMPR  283 (513)
Q Consensus       258 L~~A~~~g~~~iv~lL~~~-~~~~~~~  283 (513)
                      ||+|+..|+.+++++|+.. ++++...
T Consensus       198 L~~Aa~~~~~e~v~lLl~~Ga~in~~~  224 (284)
T PHA02791        198 IKLAIDNKDLEMLQALFKYDINIYSVN  224 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCc
Confidence            9999999999999887664 4444443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9e-35  Score=310.59  Aligned_cols=241  Identities=28%  Similarity=0.359  Sum_probs=216.2

Q ss_pred             CCCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHH-----HHHcCCHHHHHHHHHCCCCCCCCCCCCChH
Q 010335            7 CSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHF-----AAAKGHNEIVALLLENGADVNSRNYCGQTA   81 (513)
Q Consensus         7 ~s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~-----Aa~~g~~eivk~LL~~Gadvn~~d~~g~Tp   81 (513)
                      ...+.++||.|++.|+.++|++|++.|.+++.....+  .||||+     |+..|+.+++++|+++|++++..|..|.||
T Consensus        32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~--~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tp  109 (480)
T PHA03100         32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNN--STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITP  109 (480)
T ss_pred             hcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccC--cCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCch
Confidence            4456789999999999999999999999887654444  899999     999999999999999999999999999999


Q ss_pred             HHHHH--HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHccCCCCccccchhhhcccCCCCch
Q 010335           82 LMQAC--RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS  157 (513)
Q Consensus        82 Lh~A~--~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  157 (513)
                      ||+|+  ..|+.++|++|+++|++++..+. .|.||||+|+..|  +.+++++|++.+..                    
T Consensus       110 L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d--------------------  168 (480)
T PHA03100        110 LLYAISKKSNSYSIVEYLLDNGANVNIKNS-DGENLLHLYLESNKIDLKILKLLIDKGVD--------------------  168 (480)
T ss_pred             hhHHHhcccChHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCChHHHHHHHHHCCCC--------------------
Confidence            99999  99999999999999999998885 8999999999999  99999999988754                    


Q ss_pred             hhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCC------CchhHHHhhC
Q 010335          158 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG------STPLHFAACG  231 (513)
Q Consensus       158 ~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G------~TpLh~Aa~~  231 (513)
                                   ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |      .||||+|+..
T Consensus       169 -------------in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~----------~~~~~~~~t~l~~a~~~  225 (480)
T PHA03100        169 -------------INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIE----------TLLFTIFETPLHIAACY  225 (480)
T ss_pred             -------------cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCC----------CCcHHHHHhHHHHHHHh
Confidence                         5667778999999999999999999999999999988865          6      8999999999


Q ss_pred             CC--HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC-CCCCCCCCCCccccchhHH
Q 010335          232 GN--LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD-AVMPRFHPSNYLSLPLLSV  297 (513)
Q Consensus       232 g~--~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~-~~~~~~~~~~~~~~~l~~~  297 (513)
                      |+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++|.+.+. .+..    +..+.+|+..+
T Consensus       226 ~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~----d~~g~tpl~~A  290 (480)
T PHA03100        226 NEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV----NKYGDTPLHIA  290 (480)
T ss_pred             CcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----CCCCCcHHHHH
Confidence            99  999999999999999999999999999999999999988877554 3322    55666775443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=303.78  Aligned_cols=209  Identities=27%  Similarity=0.392  Sum_probs=113.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW   91 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~   91 (513)
                      ..|..|+..||++.++.|++.++....... ..+.||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~-~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~   81 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISV-DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAH   81 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            356666666666666666665443222211 1235666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhcCCC-----------------------CCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhh
Q 010335           92 EVVQTLLLFRCN-----------------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  148 (513)
Q Consensus        92 eiVk~LL~~ga~-----------------------~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~  148 (513)
                      ++|++|+++|++                       ++..+. .|.||||+|+..|+.+++++|++.+..           
T Consensus        82 ~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~-~g~T~Lh~A~~~~~~~~v~~Ll~~gad-----------  149 (434)
T PHA02874         82 DIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDA-ELKTFLHYAIKKGDLESIKMLFEYGAD-----------  149 (434)
T ss_pred             HHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCC-CCccHHHHHHHCCCHHHHHHHHhCCCC-----------
Confidence            666666655543                       233332 566666666666666666666655443           


Q ss_pred             cccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHH
Q 010335          149 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  228 (513)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  228 (513)
                                            ++.+|..|.||||+|+.+|+.+++++|+++|++++..+..          |.||||+|
T Consensus       150 ----------------------~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~----------g~tpL~~A  197 (434)
T PHA02874        150 ----------------------VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN----------GESPLHNA  197 (434)
T ss_pred             ----------------------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC----------CCCHHHHH
Confidence                                  2333444444444444444444444444444444444433          44444444


Q ss_pred             hhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335          229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  265 (513)
Q Consensus       229 a~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g  265 (513)
                      +..|+.+++++|+++|++++.++..|+||||+|+..+
T Consensus       198 ~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~  234 (434)
T PHA02874        198 AEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN  234 (434)
T ss_pred             HHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCC
Confidence            4444444444444444444444444444444444433

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-34  Score=301.74  Aligned_cols=239  Identities=25%  Similarity=0.307  Sum_probs=207.8

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC------------------
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA------------------   69 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Ga------------------   69 (513)
                      ..+.++||.|++.|+.++|++|++.|++++.....+  .||||+|+..|+.+++++|+++|+                  
T Consensus        33 ~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~--~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l  110 (434)
T PHA02874         33 DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKI--PHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI  110 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence            345789999999999999999999999987655444  899999999999999999998765                  


Q ss_pred             -----CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccc
Q 010335           70 -----DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM  144 (513)
Q Consensus        70 -----dvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  144 (513)
                           +++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..       
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~g~~-------  182 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD-NGCYPIHIAIKHNFFDIIKLLLEKGAY-------  182 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCC-------
Confidence                 4677888999999999999999999999999999998885 899999999999999999999987653       


Q ss_pred             hhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCch
Q 010335          145 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP  224 (513)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~Tp  224 (513)
                                                ++..+..|.||||+|+..|+.+++++|++.|++++..+..          |.||
T Consensus       183 --------------------------~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~----------g~Tp  226 (434)
T PHA02874        183 --------------------------ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN----------GFTP  226 (434)
T ss_pred             --------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC----------CCCH
Confidence                                      5667788999999999999999999999999999988866          9999


Q ss_pred             hHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC-ccchhhhcCCC-CCCCCCCCCCCCccccchhHHH
Q 010335          225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG-RHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVL  298 (513)
Q Consensus       225 Lh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g-~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~~l  298 (513)
                      ||+|+..+. +++++|+ .|++++.+|.+|+||||+|+..+ +.+++++|... ++.+..    +..+.+|+..+.
T Consensus       227 L~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~----d~~g~TpL~~A~  296 (434)
T PHA02874        227 LHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIK----DNKGENPIDTAF  296 (434)
T ss_pred             HHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCC----CCCCCCHHHHHH
Confidence            999999875 5667766 69999999999999999999876 67888877764 444443    556777765443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-34  Score=305.99  Aligned_cols=224  Identities=24%  Similarity=0.284  Sum_probs=206.1

Q ss_pred             CCcHHHHH-----HHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCChH
Q 010335            9 ASGERLVS-----AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA--AKGHNEIVALLLENGADVNSRNYCGQTA   81 (513)
Q Consensus         9 ~~~~~L~~-----Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa--~~g~~eivk~LL~~Gadvn~~d~~g~Tp   81 (513)
                      .+.++||.     |+..|+.++++.|++.|++++....  .|.||||+|+  ..|+.+++++|+++|++++..|..|.||
T Consensus        67 ~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~--~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~  144 (480)
T PHA03100         67 NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDN--NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENL  144 (480)
T ss_pred             cCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCC--CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcH
Confidence            35679999     9999999999999999999855444  3499999999  9999999999999999999999999999


Q ss_pred             HHHHHHcC--CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhh
Q 010335           82 LMQACRYG--HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK  159 (513)
Q Consensus        82 Lh~A~~~g--~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (513)
                      ||+|+..|  +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                      
T Consensus       145 L~~A~~~~~~~~~iv~~Ll~~g~din~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~ga~----------------------  201 (480)
T PHA03100        145 LHLYLESNKIDLKILKLLIDKGVDINAKNR-YGYTPLHIAVEKGNIDVIKFLLDNGAD----------------------  201 (480)
T ss_pred             HHHHHHcCCChHHHHHHHHHCCCCcccccC-CCCCHHHHHHHhCCHHHHHHHHHcCCC----------------------
Confidence            99999999  99999999999999998886 999999999999999999999988764                      


Q ss_pred             hhhchhHHHHhcccccCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhC
Q 010335          160 SKCDQSALSKFVNKAADGG------ITALHMAALNGY--FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG  231 (513)
Q Consensus       160 ~~~~~~~~~~~i~~~d~~G------~TpLh~Aa~~g~--~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~  231 (513)
                                 ++..+..|      .||||+|+..|+  .+++++|+++|++++..+..          |.||||+|+..
T Consensus       202 -----------~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~----------g~TpL~~A~~~  260 (480)
T PHA03100        202 -----------INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVY----------GFTPLHYAVYN  260 (480)
T ss_pred             -----------ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHc
Confidence                       33344445      799999999999  99999999999999999976          99999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       232 g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      |+.+++++|+++|+|++.+|..|.|||++|+..++.+++++|.+.+.
T Consensus       261 ~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~  307 (480)
T PHA03100        261 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP  307 (480)
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999988877654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.6e-34  Score=303.05  Aligned_cols=207  Identities=24%  Similarity=0.255  Sum_probs=122.5

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHH------------------------
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL------------------------   65 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL------------------------   65 (513)
                      +-+|||.|++.|+.++|++|+++|++++.....  |.||||+|+..|+.+++++|+                        
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~--g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHR--DLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            346899999999999999999999988765544  499999999987765555444                        


Q ss_pred             ----------------------------------------HCCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHhcCCCC
Q 010335           66 ----------------------------------------ENGADVNSRNYC-GQTALMQACRYGHWEVVQTLLLFRCNV  104 (513)
Q Consensus        66 ----------------------------------------~~Gadvn~~d~~-g~TpLh~A~~~g~~eiVk~LL~~ga~~  104 (513)
                                                              ++|++++..|.. |.||||+|+..|+.++|++|+++|+++
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                                                    445555555544 555555555555555555555555555


Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHH
Q 010335          105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM  184 (513)
Q Consensus       105 ~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~  184 (513)
                      +..+. .|.||||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+
T Consensus       195 n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~ga~---------------------------------in~~d~~g~TpLh~  240 (477)
T PHA02878        195 NIPDK-TNNSPLHHAVKHYNKPIVHILLENGAS---------------------------------TDARDKCGNTPLHI  240 (477)
T ss_pred             CCcCC-CCCCHHHHHHHhCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHH
Confidence            54443 455555555555555555555544332                                 34444455555555


Q ss_pred             HHHc-CCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Q 010335          185 AALN-GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM  263 (513)
Q Consensus       185 Aa~~-g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~  263 (513)
                      |+.. ++.+++++|+++|++++..+..         .|.||||+|  .++.+++++|+++|+|++.+|.+|+||||+|+.
T Consensus       241 A~~~~~~~~iv~~Ll~~gadvn~~~~~---------~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        241 SVGYCKDYDILKLLLEHGVDVNAKSYI---------LGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             HHHhcCCHHHHHHHHHcCCCCCccCCC---------CCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            5543 3455555555555555544421         155555555  344455555555555555555555555555554

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.9e-34  Score=304.12  Aligned_cols=253  Identities=21%  Similarity=0.164  Sum_probs=194.7

Q ss_pred             CCcHHHHHHHHcC---CHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335            9 ASGERLVSAARDG---DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG-HNEIVALLLENGADVNSRNYCGQTALMQ   84 (513)
Q Consensus         9 ~~~~~L~~Aa~~G---~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g-~~eivk~LL~~Gadvn~~d~~g~TpLh~   84 (513)
                      .+.++||.|+..|   +.+++++|++.|++++.....  |.||||+|+..| +.+++++|+++|++++.+|..|.||||+
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~--g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~  123 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC--GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV  123 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            3567888888888   888888888888888766553  488888888888 5888888888888888888888888888


Q ss_pred             HH--HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHccCCCCcccc---chhhhccc--CCCC
Q 010335           85 AC--RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVPFEV---MNTQIEGD--RGDG  155 (513)
Q Consensus        85 A~--~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~---~~~~~~~~--~~~~  155 (513)
                      |+  ..++.+++++|+++|++++..+. .|.||||+|+..+  +.+++++|++.+........   ...+....  ....
T Consensus       124 a~~~~~~~~~iv~~Ll~~gad~~~~d~-~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~  202 (471)
T PHA03095        124 YLSGFNINPKVIRLLLRKGADVNALDL-YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRA  202 (471)
T ss_pred             HhhCCcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcH
Confidence            88  45678888888888888887775 8888888888765  67888888887665432211   01111000  0000


Q ss_pred             chhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCH--HHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335          156 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF--DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN  233 (513)
Q Consensus       156 ~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~--eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~  233 (513)
                      .....   .......++.+|..|+||||+|+..|+.  .+++.|++.|++++..+..          |.||||+|+..|+
T Consensus       203 ~i~~~---Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~----------g~TpLh~A~~~~~  269 (471)
T PHA03095        203 RIVRE---LIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRY----------GQTPLHYAAVFNN  269 (471)
T ss_pred             HHHHH---HHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCC
Confidence            00000   0111223577888999999999998874  6888999999999999866          9999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335          234 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  277 (513)
Q Consensus       234 ~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~  277 (513)
                      .+++++|+++|||++.+|.+|+||||+|+..|+.+++++|++..
T Consensus       270 ~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        270 PRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999998888776644

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=296.14  Aligned_cols=222  Identities=21%  Similarity=0.171  Sum_probs=191.0

Q ss_pred             CcHHHHHHH--HcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335           10 SGERLVSAA--RDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus        10 ~~~~L~~Aa--~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ....||.++  ..++.+++++|+++|++++..+..  |.||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+.
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~--G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~  114 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDD--GNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG  114 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCC--CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            346777765  455789999999999988765544  4899999999999999999999999999999999999999988


Q ss_pred             cC--CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh
Q 010335           88 YG--HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS  165 (513)
Q Consensus        88 ~g--~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (513)
                      .+  ..+++++|+++|++++...+..|.|||| |+..++.+++++|++.+..                            
T Consensus       115 ~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad----------------------------  165 (446)
T PHA02946        115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE----------------------------  165 (446)
T ss_pred             cCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc----------------------------
Confidence            76  4889999999999998654458999997 6667899999999976643                            


Q ss_pred             HHHHhcccccCCCCcHHHHHHHcC--CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCC--CHHHHHHHH
Q 010335          166 ALSKFVNKAADGGITALHMAALNG--YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG--NLKCCQVLL  241 (513)
Q Consensus       166 ~~~~~i~~~d~~G~TpLh~Aa~~g--~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g--~~eivk~LL  241 (513)
                           ++..|..|+||||+|+..+  +.+++++|+++|++++..|..          |.||||+|+..+  +.+++++|+
T Consensus       166 -----~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~----------G~TpLH~Aa~~~~~~~~iv~lLl  230 (446)
T PHA02946        166 -----ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHD----------GNTPLHIVCSKTVKNVDIINLLL  230 (446)
T ss_pred             -----ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCCcHHHHHHHH
Confidence                 6778899999999998755  479999999999999999976          999999999976  889999999


Q ss_pred             HCCCCCCCcCCCCCcHHHHHHHcCc-cchhhhcCCCCC
Q 010335          242 SRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD  278 (513)
Q Consensus       242 ~~Gad~~~~d~~G~TpL~~A~~~g~-~~iv~lL~~~~~  278 (513)
                      + |++++.+|..|+||||+|+..++ .+++++|...+.
T Consensus       231 ~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        231 P-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             c-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            5 99999999999999999999988 477777766553

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1e-33  Score=307.46  Aligned_cols=263  Identities=17%  Similarity=0.077  Sum_probs=193.2

Q ss_pred             CCcHHHHHHHH--cCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335            9 ASGERLVSAAR--DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGH--NEIVALLLENGADVNSRNYCGQTALMQ   84 (513)
Q Consensus         9 ~~~~~L~~Aa~--~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~--~eivk~LL~~Gadvn~~d~~g~TpLh~   84 (513)
                      .+.++||.|+.  .++.+++++|+++|++++..+..+  .||||+|+..|+  .++|++|+++|+|+|.+|..|+||||+
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G--~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~  253 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHL--ITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT  253 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            45678998864  468999999999999988755544  899999999995  499999999999999999999999997


Q ss_pred             H-------------------------------------HHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH--cCCH
Q 010335           85 A-------------------------------------CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV--NGHV  125 (513)
Q Consensus        85 A-------------------------------------~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~--~g~~  125 (513)
                      |                                     +..|+.++|++|+++|++++..+. .|+||||+|+.  .++.
T Consensus       254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~-~G~TPLH~Aaa~~~~~~  332 (764)
T PHA02716        254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDS-AGRTCLHQYILRHNIST  332 (764)
T ss_pred             HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCC-CCCCHHHHHHHHhCCCc
Confidence            5                                     445788999999999999998875 89999999864  4688


Q ss_pred             HHHHHHHHccCCCCccc---cchhhhcccC--------------CCCchhhhhhchhHHHHhcccccCCCCcHHHH----
Q 010335          126 RCIRLVVADFVPSVPFE---VMNTQIEGDR--------------GDGSSVKSKCDQSALSKFVNKAADGGITALHM----  184 (513)
Q Consensus       126 ~iv~~Ll~~~~~~~~~~---~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~----  184 (513)
                      +++++|++.|+......   ....+.+...              .....+...   ......++.++..|+||||.    
T Consensus       333 eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklL---L~~GADIn~kn~~G~TPLh~y~~~  409 (764)
T PHA02716        333 DIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCL---ISLGADITAVNCLGYTPLTSYICT  409 (764)
T ss_pred             hHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHH---HHCCCCCCCcCCCCCChHHHHHHH
Confidence            99999999887543221   1111111100              000001100   11223467788899999994    


Q ss_pred             HHHcCCHHHHHHHHHcCCCcccccc-----------cC----------C----------------ccc------------
Q 010335          185 AALNGYFDCVQLLLDLHANVSAVTF-----------HY----------G----------------TSM------------  215 (513)
Q Consensus       185 Aa~~g~~eiv~~Ll~~Gadvn~~~~-----------~~----------~----------------~~~------------  215 (513)
                      |...++.+++++|++.|+.....+.           ..          +                ...            
T Consensus       410 a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~n  489 (764)
T PHA02716        410 AQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYN  489 (764)
T ss_pred             HHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcc
Confidence            3335789999999988754221110           00          0                000            


Q ss_pred             -c-ccCCCCchhHHHhhCCCHH-----HHHHHHHCCCCCCCcCCCCCcHHHHHHHcCcc-----chhhhcCCCC
Q 010335          216 -D-LIGAGSTPLHFAACGGNLK-----CCQVLLSRGASRMSLNCNGWLPLDVARMWGRH-----WLEPLLAPSS  277 (513)
Q Consensus       216 -~-~~~~G~TpLh~Aa~~g~~e-----ivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~-----~iv~lL~~~~  277 (513)
                       + ....|+||||+|+..|+.+     ++++|+++|+|++.+|.+|+||||+|+++|+.     +++++|++.+
T Consensus       490 vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~g  563 (764)
T PHA02716        490 NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKR  563 (764)
T ss_pred             ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcC
Confidence             0 0135999999999998874     55999999999999999999999999999976     8888777644

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=289.33  Aligned_cols=209  Identities=32%  Similarity=0.424  Sum_probs=193.7

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc
Q 010335           11 GERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRY   88 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~-~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~   88 (513)
                      ...++.|+.+|+++.|+.|++. +.+++..+.  .|-|+||+||.+++++++++|+++|+|||..+ .-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~--~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDR--EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCc--CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            4578999999999999999998 777765544  45999999999999999999999999999998 6789999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      |+..+|++|+++||+++..|. +|.+|||+|++.|+.-+|-+|+.++.+                               
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~-~G~~~lHla~~~~~~~~vayll~~~~d-------------------------------  170 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDK-QGLTPLHLAAQFGHTALVAYLLSKGAD-------------------------------  170 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecC-CCCcHHHHHHHhCchHHHHHHHHhccc-------------------------------
Confidence            999999999999999999996 999999999999999999999987643                               


Q ss_pred             HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335          169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  248 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~  248 (513)
                        ++.+|.+|+||||+||.+|+...+..||+.|+.++..|..         .|+||||+|+..||..++++|++.|++.+
T Consensus       171 --~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~---------~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d  239 (600)
T KOG0509|consen  171 --IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDN---------HGNTPLHWAVVGGNLTAVKLLLEGGADLD  239 (600)
T ss_pred             --CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccc---------cCCchHHHHHhcCCcceEehhhhcCCccc
Confidence              7899999999999999999988899999999999999954         39999999999999999998888899999


Q ss_pred             CcCCCCCcHHHHHHHc
Q 010335          249 SLNCNGWLPLDVARMW  264 (513)
Q Consensus       249 ~~d~~G~TpL~~A~~~  264 (513)
                      .+|.+|.||+++|.+.
T Consensus       240 ~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  240 KTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccCCCCHHHHHHHh
Confidence            9999999999999877

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=289.49  Aligned_cols=254  Identities=16%  Similarity=0.104  Sum_probs=167.6

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCC--HHHHHHHHHCCCCCCC-CCCCCChHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGH--NEIVALLLENGADVNS-RNYCGQTALMQ   84 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~--~eivk~LL~~Gadvn~-~d~~g~TpLh~   84 (513)
                      ..+.++||.|++.|+.+++++||++|++++..+..+  .||||+|+..++  .+++++|+++|++++. .|..|.|||| 
T Consensus        70 ~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g--~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-  146 (446)
T PHA02946         70 DDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQH--KTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-  146 (446)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCC--CCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-
Confidence            456789999999999999999999999988655544  899999998764  8999999999999995 6899999997 


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHccCCCCc---cccchhhhcccCCCC--ch
Q 010335           85 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVP---FEVMNTQIEGDRGDG--SS  157 (513)
Q Consensus        85 A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~---~~~~~~~~~~~~~~~--~~  157 (513)
                      |+..|+.+++++|+++|++++..+. .|+||||+|+..+  +.+++++|++.+.+...   ......+.+...+..  ..
T Consensus       147 aa~~~~~~vv~~Ll~~gad~~~~d~-~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~i  225 (446)
T PHA02946        147 ACTDPSERVFKKIMSIGFEARIVDK-FGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDI  225 (446)
T ss_pred             HHHCCChHHHHHHHhccccccccCC-CCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHH
Confidence            7778999999999999999998886 9999999998755  57899999998775321   111222222211100  01


Q ss_pred             hhhhhchhHHHHhcccccCCCCcHHHHHHHcCC-HHHHHHHHHcCCCcccccccCCcc---------cccc--CCCCchh
Q 010335          158 VKSKCDQSALSKFVNKAADGGITALHMAALNGY-FDCVQLLLDLHANVSAVTFHYGTS---------MDLI--GAGSTPL  225 (513)
Q Consensus       158 ~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~-~eiv~~Ll~~Gadvn~~~~~~~~~---------~~~~--~~G~TpL  225 (513)
                      +....    ....++.+|..|.||||+|+..++ .+++++|+++|++++....+....         +...  ..|.|||
T Consensus       226 v~lLl----~gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpL  301 (446)
T PHA02946        226 INLLL----PSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDF  301 (446)
T ss_pred             HHHHH----cCCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHH
Confidence            11000    013355555566666666666555 355666666655544322111000         0000  1244666


Q ss_pred             HHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       226 h~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      |+|+..|+.++|++||++|+       +|+||||+|+..++.+++++|..+
T Consensus       302 h~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~  345 (446)
T PHA02946        302 KMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFN  345 (446)
T ss_pred             HHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHC
Confidence            66666666666666665542       456666666666666665555443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=292.72  Aligned_cols=263  Identities=24%  Similarity=0.236  Sum_probs=210.7

Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC-C
Q 010335           15 VSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG---HNEIVALLLENGADVNSRNYCGQTALMQACRYG-H   90 (513)
Q Consensus        15 ~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g---~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g-~   90 (513)
                      +.|+..+++++|++|+++|++++.....+  .||||+|+..|   +.+++++|+++|+|+|.+|..|.||||+|+..| +
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g--~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYG--KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCC--CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCc
Confidence            45688899999999999999987655544  89999999999   999999999999999999999999999999999 5


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHHHccCCCCcccc---chhhhcccCCC--Cchhhhhhc
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAA--VNGHVRCIRLVVADFVPSVPFEV---MNTQIEGDRGD--GSSVKSKCD  163 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~  163 (513)
                      .+++++|+++|++++..+. .|.||||+|+  ..++.+++++|++.+........   ...+.......  ...+...  
T Consensus        97 ~~iv~lLl~~ga~in~~~~-~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L--  173 (471)
T PHA03095         97 LDVIKLLIKAGADVNAKDK-VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL--  173 (471)
T ss_pred             HHHHHHHHHcCCCCCCCCC-CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH--
Confidence            9999999999999999886 8999999999  56689999999998875433211   11111111110  0001110  


Q ss_pred             hhHHHHhcccccCCCCcHHHHHHHc--CCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCH--HHHHH
Q 010335          164 QSALSKFVNKAADGGITALHMAALN--GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL--KCCQV  239 (513)
Q Consensus       164 ~~~~~~~i~~~d~~G~TpLh~Aa~~--g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~--eivk~  239 (513)
                       ......++..+..|.||||+|+..  ++.+++++|+++|++++..+..          |.||||+|+..|+.  .+++.
T Consensus       174 -l~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~----------g~tpLh~Aa~~~~~~~~~v~~  242 (471)
T PHA03095        174 -IDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDML----------GNTPLHSMATGSSCKRSLVLP  242 (471)
T ss_pred             -HHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHhcCCchHHHHHH
Confidence             011122445578899999999875  7799999999999999999977          99999999999975  68999


Q ss_pred             HHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC-CCCCCCCCCCCCccccchhHH
Q 010335          240 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSV  297 (513)
Q Consensus       240 LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~~  297 (513)
                      |+++|++++.+|.+|+||||+|+..|+.+++++|+.. ++.+..    +..+.+|++.+
T Consensus       243 ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~----~~~g~tpl~~A  297 (471)
T PHA03095        243 LLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAV----SSDGNTPLSLM  297 (471)
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHH
Confidence            9999999999999999999999999999988777654 444443    55666775543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-32  Score=292.77  Aligned_cols=231  Identities=18%  Similarity=0.171  Sum_probs=175.8

Q ss_pred             CcHHHHHHHHc--CCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC------CHHHHHHHHHCCCCCCCCCCCCChH
Q 010335           10 SGERLVSAARD--GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG------HNEIVALLLENGADVNSRNYCGQTA   81 (513)
Q Consensus        10 ~~~~L~~Aa~~--G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g------~~eivk~LL~~Gadvn~~d~~g~Tp   81 (513)
                      +.++|+.++..  ++.++|+.||++|++++...   .+.||||.|+.++      +.++|++|+++|+|+|.+|..|.||
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~---~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tp  111 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG---YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSP  111 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC---CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            45667655443  37899999999999987542   2389999998754      4689999999999999999999999


Q ss_pred             HHHHHHc---CCHHHHHHHHhcCCCC-CcccCCCCCcHHHHHHHc--CCHHHHHHHHHccCCCCccccchhhhcccCCCC
Q 010335           82 LMQACRY---GHWEVVQTLLLFRCNV-TRADYLSGRTALHFAAVN--GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDG  155 (513)
Q Consensus        82 Lh~A~~~---g~~eiVk~LL~~ga~~-~~~~~~~G~TpLh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~  155 (513)
                      ||.|+..   |+.++|++|+++|+++ +..+ ..|+||||+|+..  ++.+++++|++.|++....              
T Consensus       112 L~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d-~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~--------------  176 (494)
T PHA02989        112 IVCFIYNSNINNCDMLRFLLSKGINVNDVKN-SRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK--------------  176 (494)
T ss_pred             HHHHHHhcccCcHHHHHHHHHCCCCcccccC-CCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc--------------
Confidence            9988765   6799999999999999 5655 4899999998764  6899999999988653210              


Q ss_pred             chhhhhhchhHHHHhcccccCCCCcHHHHHHHcC----CHHHHHHHHHcCCCcccccccCCcccc---------------
Q 010335          156 SSVKSKCDQSALSKFVNKAADGGITALHMAALNG----YFDCVQLLLDLHANVSAVTFHYGTSMD---------------  216 (513)
Q Consensus       156 ~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g----~~eiv~~Ll~~Gadvn~~~~~~~~~~~---------------  216 (513)
                                        .+..|.||||+|+.++    +.+++++|+++|++++..+....+.+.               
T Consensus       177 ------------------~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~  238 (494)
T PHA02989        177 ------------------TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFK  238 (494)
T ss_pred             ------------------ccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchH
Confidence                              2334555555554432    455555555555555544421111100               


Q ss_pred             -------------ccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          217 -------------LIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       217 -------------~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                                   ....|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+..|+.+++++|++.
T Consensus       239 il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        239 VLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             HHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                         012399999999999999999999999999999999999999999999999999888764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-32  Score=304.95  Aligned_cols=257  Identities=21%  Similarity=0.138  Sum_probs=185.5

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHH----------------------------------
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA----------------------------------   53 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa----------------------------------   53 (513)
                      +.+.++||.|++.|+.++|+.|++.+|++... .+..|.||||+|+                                  
T Consensus        39 ~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~-~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  117 (682)
T PHA02876         39 SIPFTAIHQALQLRQIDIVEEIIQQNPELIYI-TDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKL  117 (682)
T ss_pred             cccchHHHHHHHHHhhhHHHHHHHhCcccchh-hchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHH
Confidence            34689999999999999999999999986533 3344589999666                                  


Q ss_pred             ------------------------------------HcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q 010335           54 ------------------------------------AKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL   97 (513)
Q Consensus        54 ------------------------------------~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~L   97 (513)
                                                          ..|+.+++++|++.|+++|.+|..|.||||+|+..|+.++|++|
T Consensus       118 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~L  197 (682)
T PHA02876        118 DEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLL  197 (682)
T ss_pred             HHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence                                                56789999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcc--------------------cCCCCch
Q 010335           98 LLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG--------------------DRGDGSS  157 (513)
Q Consensus        98 L~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~--------------------~~~~~~~  157 (513)
                      +++|++++..+. .|.||||+|+..|+.+++++|++.+......... ...+.                    .......
T Consensus       198 L~~Gad~n~~~~-~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~-L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~T  275 (682)
T PHA02876        198 LSYGADVNIIAL-DDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLS-LLKAIRNEDLETSLLLYDAGFSVNSIDDCKNT  275 (682)
T ss_pred             HHCCCCcCccCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHH-HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            999999998875 8999999999999999999999765433211100 00000                    0000000


Q ss_pred             hhhh----hch-------hHHHHhcccccCCCCcHHHHHHHcC-CHHHHHHHHHcCCCcccccccCCccccccCCCCchh
Q 010335          158 VKSK----CDQ-------SALSKFVNKAADGGITALHMAALNG-YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL  225 (513)
Q Consensus       158 ~~~~----~~~-------~~~~~~i~~~d~~G~TpLh~Aa~~g-~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpL  225 (513)
                      ....    ...       ......++..|..|.||||+|+.+| +.+++++|++.|++++..+..          |.|||
T Consensus       276 pLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~----------g~TpL  345 (682)
T PHA02876        276 PLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRL----------YITPL  345 (682)
T ss_pred             HHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccC----------CCcHH
Confidence            0000    000       0011124556667777777777777 477777777777777776655          77777


Q ss_pred             HHHhhC-CCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335          226 HFAACG-GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  277 (513)
Q Consensus       226 h~Aa~~-g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~  277 (513)
                      |+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.+
T Consensus       346 h~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g  398 (682)
T PHA02876        346 HQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG  398 (682)
T ss_pred             HHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            777764 4567777777777777777777777777777777777766665543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.7e-32  Score=301.44  Aligned_cols=270  Identities=23%  Similarity=0.220  Sum_probs=177.8

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHH------------------------
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL------------------------   65 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL------------------------   65 (513)
                      +.+|||.|++.|+.++|++|+++|++++.....+  .||||+|+..|+.+++++|+                        
T Consensus       178 G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g--~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~  255 (682)
T PHA02876        178 CITPIHYAAERGNAKMVNLLLSYGADVNIIALDD--LSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLET  255 (682)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCC--CCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHH
Confidence            4456666666666666666666666555433333  56666666655555544433                        


Q ss_pred             -----HCCCCCCCCCCCCChHHHHHHHcCCH-HHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHHccCCC
Q 010335           66 -----ENGADVNSRNYCGQTALMQACRYGHW-EVVQTLLLFRCNVTRADYLSGRTALHFAAVNG-HVRCIRLVVADFVPS  138 (513)
Q Consensus        66 -----~~Gadvn~~d~~g~TpLh~A~~~g~~-eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g-~~~iv~~Ll~~~~~~  138 (513)
                           +.|++++..|..|.||||+|+..|+. +++++|++.|++++..+. .|.||||+|+..| +.+++++|+..+...
T Consensus       256 ~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~-~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi  334 (682)
T PHA02876        256 SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI-KGETPLYLMAKNGYDTENIRTLIMLGADV  334 (682)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhCCCHHHHHHHHHcCCCC
Confidence                 33445555566677777777776664 466777777777766664 6777777777776 466777777665443


Q ss_pred             Ccccc---chhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccc
Q 010335          139 VPFEV---MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM  215 (513)
Q Consensus       139 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~  215 (513)
                      .....   ...+.+...+.......  ........++.+|..|.||||+|+..|+.+++++|+++|++++..+..     
T Consensus       335 n~~d~~g~TpLh~A~~~~~~~~iv~--lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~-----  407 (682)
T PHA02876        335 NAADRLYITPLHQASTLDRNKDIVI--TLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK-----  407 (682)
T ss_pred             CCcccCCCcHHHHHHHhCCcHHHHH--HHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC-----
Confidence            22111   11111111000000000  011122346788899999999999999999999999999999998876     


Q ss_pred             cccCCCCchhHHHhhCCC-HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC-ccchhhhcCCCC-CCCCCCCCCCCcccc
Q 010335          216 DLIGAGSTPLHFAACGGN-LKCCQVLLSRGASRMSLNCNGWLPLDVARMWG-RHWLEPLLAPSS-DAVMPRFHPSNYLSL  292 (513)
Q Consensus       216 ~~~~~G~TpLh~Aa~~g~-~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g-~~~iv~lL~~~~-~~~~~~~~~~~~~~~  292 (513)
                           |.||||+|+..++ ..++++|+++|++++.+|.+|+||||+|+..+ +.+++++|.+.+ +.+..    +..+.+
T Consensus       408 -----g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~----d~~g~t  478 (682)
T PHA02876        408 -----IGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI----NIQNQY  478 (682)
T ss_pred             -----CCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC----CCCCCC
Confidence                 8999999997666 56799999999999999999999999999877 578888776654 33333    667778


Q ss_pred             chhHHH
Q 010335          293 PLLSVL  298 (513)
Q Consensus       293 ~l~~~l  298 (513)
                      |+..++
T Consensus       479 pl~~a~  484 (682)
T PHA02876        479 PLLIAL  484 (682)
T ss_pred             HHHHHH
Confidence            876554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-33  Score=241.74  Aligned_cols=194  Identities=32%  Similarity=0.380  Sum_probs=173.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCC-CCChHHHHHHHcCCHHHHHHHH-hcCCCCCcccCCCCCcHHHHHHHc
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNY-CGQTALMQACRYGHWEVVQTLL-LFRCNVTRADYLSGRTALHFAAVN  122 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Ga-dvn~~d~-~g~TpLh~A~~~g~~eiVk~LL-~~ga~~~~~~~~~G~TpLh~A~~~  122 (513)
                      .++.+.++......-|+.|++... .++.++. +|+||||+||..|+.++|.+|+ +.+..++..|+ .||||||.|+..
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-aGWtPlhia~s~   82 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-AGWTPLHIAASN   82 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-cCCchhhhhhhc
Confidence            578888888888888888888766 6777776 9999999999999999999999 56788888876 999999999999


Q ss_pred             CCHHHHHHHHHc-cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335          123 GHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH  201 (513)
Q Consensus       123 g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G  201 (513)
                      |+.++|+.|+.+ +++                                 +|..+..|.|+||+|+..|..+|+++|+++|
T Consensus        83 g~~evVk~Ll~r~~ad---------------------------------vna~tn~G~T~LHyAagK~r~eIaqlLle~g  129 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGAD---------------------------------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKG  129 (226)
T ss_pred             CcHHHHHHHhcCCCCC---------------------------------cceecCCCcceehhhhcCChhhHHHHHHhcC
Confidence            999999999976 322                                 7888999999999999999999999999999


Q ss_pred             CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCC-CCCCC
Q 010335          202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAV  280 (513)
Q Consensus       202 advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~-~~~~~  280 (513)
                      +.++.+|..          |.||||-|+.-|+++++++|+..|+.+|.+|..|+||||.|.-.|+.++..+|.. +++.+
T Consensus       130 a~i~~kD~~----------~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~  199 (226)
T KOG4412|consen  130 ALIRIKDKQ----------GQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTD  199 (226)
T ss_pred             CCCcccccc----------cCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhcccee
Confidence            999999988          9999999999999999999999999999999999999999988889887665554 55555


Q ss_pred             CCC
Q 010335          281 MPR  283 (513)
Q Consensus       281 ~~~  283 (513)
                      ..+
T Consensus       200 ~ed  202 (226)
T KOG4412|consen  200 RED  202 (226)
T ss_pred             ecc
Confidence            543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6e-32  Score=289.15  Aligned_cols=225  Identities=20%  Similarity=0.160  Sum_probs=178.6

Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC-
Q 010335           16 SAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAK-----GHNEIVALLLENGADVNSRNYCGQTALMQACRYG-   89 (513)
Q Consensus        16 ~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~-----g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g-   89 (513)
                      .+...++.++|++|+++|++++.....+  .||||+|+.+     ++.+++++|+++|+|+|.+|..|.||||+|+.++ 
T Consensus        44 l~~~~~~~~iv~~Ll~~Gadvn~~d~~g--~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~  121 (489)
T PHA02798         44 LQRDSPSTDIVKLFINLGANVNGLDNEY--STPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGY  121 (489)
T ss_pred             HhCCCCCHHHHHHHHHCCCCCCCCCCCC--CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCC
Confidence            3444568999999999999998665444  8999999864     6799999999999999999999999999999986 


Q ss_pred             --CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC---HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhch
Q 010335           90 --HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH---VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ  164 (513)
Q Consensus        90 --~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (513)
                        +.+++++|+++|++++..+. .|.||||+|+..++   .+++++|++.|.+.                          
T Consensus       122 ~~~~~iv~~Ll~~Gadvn~~d~-~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi--------------------------  174 (489)
T PHA02798        122 INNLEILLFMIENGADTTLLDK-DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI--------------------------  174 (489)
T ss_pred             cChHHHHHHHHHcCCCccccCC-CCCcHHHHHHHcCCcchHHHHHHHHHhCCCc--------------------------
Confidence              78999999999999998886 99999999999998   99999999887652                          


Q ss_pred             hHHHHhcccc-cCCCCcHHHHHHHc----CCHHHHHHHHHcCCCcccccccCCcccc-----------------------
Q 010335          165 SALSKFVNKA-ADGGITALHMAALN----GYFDCVQLLLDLHANVSAVTFHYGTSMD-----------------------  216 (513)
Q Consensus       165 ~~~~~~i~~~-d~~G~TpLh~Aa~~----g~~eiv~~Ll~~Gadvn~~~~~~~~~~~-----------------------  216 (513)
                             +.. +..|.||||.++.+    ++.+++++|+++|++++..+......+.                       
T Consensus       175 -------n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~  247 (489)
T PHA02798        175 -------NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS  247 (489)
T ss_pred             -------ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh
Confidence                   222 12345555555432    2455555555555555443322111100                       


Q ss_pred             ------ccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          217 ------LIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       217 ------~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                            ....|.||||+|+..|+.+++++|+++|||++.+|..|+|||++|+..++..+++.|++.
T Consensus       248 ~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~  313 (489)
T PHA02798        248 YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNK  313 (489)
T ss_pred             cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHcc
Confidence                  012399999999999999999999999999999999999999999999999888777654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=285.81  Aligned_cols=236  Identities=23%  Similarity=0.242  Sum_probs=186.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhcC---CCC-ccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335           13 RLVSAARDGDFVEAKMLLDCN---PCL-AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus        13 ~L~~Aa~~G~~e~vk~LL~~~---~~~-~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .|+.+++..+.+.+...++.-   ... ......  +.||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~--~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~   80 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLI--PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKE   80 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCccccc--CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            478888888876666666541   111 111222  37999999999999999999999999999999999999999987


Q ss_pred             CCHH----------------------------------------------------------------HHHHHHhcCCCC
Q 010335           89 GHWE----------------------------------------------------------------VVQTLLLFRCNV  104 (513)
Q Consensus        89 g~~e----------------------------------------------------------------iVk~LL~~ga~~  104 (513)
                      |+.+                                                                ++++|+++|+++
T Consensus        81 g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi  160 (477)
T PHA02878         81 PNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI  160 (477)
T ss_pred             ccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC
Confidence            6543                                                                666677777787


Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHH
Q 010335          105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM  184 (513)
Q Consensus       105 ~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~  184 (513)
                      +..+...|.||||+|+.+|+.+++++|++.++.                                 ++..|..|.||||+
T Consensus       161 n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad---------------------------------~n~~d~~g~tpLh~  207 (477)
T PHA02878        161 NMKDRHKGNTALHYATENKDQRLTELLLSYGAN---------------------------------VNIPDKTNNSPLHH  207 (477)
T ss_pred             CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCCHHHH
Confidence            777753388899999988888988888876653                                 66778889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhC-CCHHHHHHHHHCCCCCCCcCC-CCCcHHHHHH
Q 010335          185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG-GNLKCCQVLLSRGASRMSLNC-NGWLPLDVAR  262 (513)
Q Consensus       185 Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~-g~~eivk~LL~~Gad~~~~d~-~G~TpL~~A~  262 (513)
                      |+..|+.+++++|++.|++++..+..          |.||||+|+.. ++.+++++|+++|++++.++. .|+||||+| 
T Consensus       208 A~~~~~~~iv~~Ll~~ga~in~~d~~----------g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A-  276 (477)
T PHA02878        208 AVKHYNKPIVHILLENGASTDARDKC----------GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS-  276 (477)
T ss_pred             HHHhCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH-
Confidence            99999999999999999999988876          99999999975 689999999999999998875 799999999 


Q ss_pred             HcCccchhhhcCCC-CCCCCCCCCCCCccccchhHHHH
Q 010335          263 MWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVLN  299 (513)
Q Consensus       263 ~~g~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~~l~  299 (513)
                       .++.+++++|.+. ++.+..    +..+.+|++.++.
T Consensus       277 -~~~~~~v~~Ll~~gadin~~----d~~g~TpL~~A~~  309 (477)
T PHA02878        277 -IKSERKLKLLLEYGADINSL----NSYKLTPLSSAVK  309 (477)
T ss_pred             -ccCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHH
Confidence             4566677766554 444443    5667788766554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4.2e-32  Score=283.47  Aligned_cols=283  Identities=25%  Similarity=0.275  Sum_probs=229.0

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      +.+..+||.|+....++.+++|++.|++....+...  .+|||+|+..|+.+.++.|+++|+|+|..|..|.||||.|+.
T Consensus        86 ~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~--~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~  163 (929)
T KOG0510|consen   86 SADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNK--NAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAAR  163 (929)
T ss_pred             cccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhc--cCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHh
Confidence            456678999999999999999999999988766655  899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc-cC-------CCCccccchhhhcccCCCCchhh
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD-FV-------PSVPFEVMNTQIEGDRGDGSSVK  159 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~  159 (513)
                      +++.|..+.|++.|+++...+. +|.+|+|.|+++|..++.++.+.+ +.       ...+......+.+...+.....+
T Consensus       164 ~~~~E~~k~Li~~~a~~~K~~~-~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk  242 (929)
T KOG0510|consen  164 KNKVEAKKELINKGADPCKSDI-DGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLK  242 (929)
T ss_pred             cChHHHHHHHHhcCCCCCcccC-cCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHH
Confidence            9999988999999999998875 899999999999999999988861 11       11112222223333333222221


Q ss_pred             hhh------------chhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHH
Q 010335          160 SKC------------DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  227 (513)
Q Consensus       160 ~~~------------~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  227 (513)
                      ...            .....+..++..|.+|.||||+|++.|+.+.|+.|+..|++++.++.+          +.||||.
T Consensus       243 ~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d----------~~spLH~  312 (929)
T KOG0510|consen  243 MCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKD----------EESPLHF  312 (929)
T ss_pred             HHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCC----------CCCchHH
Confidence            111            223455678999999999999999999999999999999999999977          9999999


Q ss_pred             HhhCCCHHHHHHHHH-CC-CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCCCCCCCCCCCccccchhHHHHHHHHhC
Q 010335          228 AACGGNLKCCQVLLS-RG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECG  305 (513)
Q Consensus       228 Aa~~g~~eivk~LL~-~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~~~~~~~~~~~~~~l~~~l~~a~e~g  305 (513)
                      ||.+|+.+.|+-||+ .| ...|..|..|.||||+|++.||..++++|++.++........+.++.++    ++.|..+|
T Consensus       313 AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~Ta----LH~Aa~~g  388 (929)
T KOG0510|consen  313 AAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTA----LHLAAKYG  388 (929)
T ss_pred             HHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchh----hhHHHHhc
Confidence            999999999999998 43 4578889999999999999999999999998888766422336666666    44555555


Q ss_pred             CC
Q 010335          306 LL  307 (513)
Q Consensus       306 ~~  307 (513)
                      ..
T Consensus       389 ~~  390 (929)
T KOG0510|consen  389 NT  390 (929)
T ss_pred             cH
Confidence            43

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-31  Score=279.15  Aligned_cols=213  Identities=19%  Similarity=0.183  Sum_probs=190.4

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCChHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN-SRNYCGQTALMQAC   86 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn-~~d~~g~TpLh~A~   86 (513)
                      ..+.++||.|++.|+.+++++|++.|.+.+....  .+.||||+|+..|+.++|++|++.|.+++ ..+..|.||||+|+
T Consensus        33 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~--~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~  110 (413)
T PHA02875         33 YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYP--DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLAT  110 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCC--CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHH
Confidence            3578899999999999999999999987665433  34899999999999999999999998764 45678999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335           87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  166 (513)
Q Consensus        87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      ..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                             
T Consensus       111 ~~~~~~iv~~Ll~~gad~~~~~~-~g~tpLh~A~~~~~~~~v~~Ll~~g~~-----------------------------  160 (413)
T PHA02875        111 ILKKLDIMKLLIARGADPDIPNT-DKFSPLHLAVMMGDIKGIELLIDHKAC-----------------------------  160 (413)
T ss_pred             HhCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCC-----------------------------
Confidence            99999999999999999998885 899999999999999999999987653                             


Q ss_pred             HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335          167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  246 (513)
                          ++..|..|.||||+|+..|+.+++++|+++|++++..+..         .+.||||+|+..|+.+++++|+++|+|
T Consensus       161 ----~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~---------~~~t~l~~A~~~~~~~iv~~Ll~~gad  227 (413)
T PHA02875        161 ----LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN---------GCVAALCYAIENNKIDIVRLFIKRGAD  227 (413)
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC---------CCchHHHHHHHcCCHHHHHHHHHCCcC
Confidence                5677889999999999999999999999999999998866         146899999999999999999999999


Q ss_pred             CCCc---CCCCCcHHHHHHHcC
Q 010335          247 RMSL---NCNGWLPLDVARMWG  265 (513)
Q Consensus       247 ~~~~---d~~G~TpL~~A~~~g  265 (513)
                      ++..   +.++.|||+++....
T Consensus       228 ~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        228 CNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             cchHhhcCCCchHHHHHHHhhc
Confidence            9865   678899999886543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.98  E-value=1.5e-31  Score=290.80  Aligned_cols=245  Identities=20%  Similarity=0.135  Sum_probs=190.2

Q ss_pred             HHcCCHHHHHHHHhcC-CCCccccCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC--HH
Q 010335           18 ARDGDFVEAKMLLDCN-PCLAKYSTFGGLNSPLHFAAA--KGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH--WE   92 (513)
Q Consensus        18 a~~G~~e~vk~LL~~~-~~~~~~~~~~~g~TpLh~Aa~--~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~--~e   92 (513)
                      .+.++++++++|++.| ++++... +..|.||||+|+.  .++.++|++|+++|+++|.+|..|.||||+|+..|+  .+
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~~-d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYVC-KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCccccc-CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHH
Confidence            4579999999999999 8887541 2334999999875  467999999999999999999999999999999995  59


Q ss_pred             HHHHHHhcCCCCCcccCCCCCcHHHHHH---HcCCHHHHHHHHHccCCCCccccc---hh-hhcccCCCCchhhhhhchh
Q 010335           93 VVQTLLLFRCNVTRADYLSGRTALHFAA---VNGHVRCIRLVVADFVPSVPFEVM---NT-QIEGDRGDGSSVKSKCDQS  165 (513)
Q Consensus        93 iVk~LL~~ga~~~~~~~~~G~TpLh~A~---~~g~~~iv~~Ll~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~  165 (513)
                      +|++|+++|++++..+. .|+||||+|+   .+++.+++++|++...........   .. ..+...+....+....   
T Consensus       229 IVklLLe~GADVN~kD~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL---  304 (764)
T PHA02716        229 VIKKIIELGGDMDMKCV-NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL---  304 (764)
T ss_pred             HHHHHHHcCCCCCCCCC-CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHH---
Confidence            99999999999999886 8999999986   467999999998754321110000   00 0001111111111111   


Q ss_pred             HHHHhcccccCCCCcHHHHHHH--cCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhh-------------
Q 010335          166 ALSKFVNKAADGGITALHMAAL--NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC-------------  230 (513)
Q Consensus       166 ~~~~~i~~~d~~G~TpLh~Aa~--~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~-------------  230 (513)
                      .....++.+|..|+||||+|+.  .++.+++++|+++|++++.+|..          |.||||+|+.             
T Consensus       305 e~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~----------G~TPLH~A~~~lav~~~ld~~~~  374 (764)
T PHA02716        305 QPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNI----------GNTVLHTYLSMLSVVNILDPETD  374 (764)
T ss_pred             hCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCC----------CCCHHHHHHHhhhhhcccccccc
Confidence            1123467889999999999865  46899999999999999999976          9999999875             


Q ss_pred             -CCCHHHHHHHHHCCCCCCCcCCCCCcHHHH----HHHcCccchhhhcCCCC
Q 010335          231 -GGNLKCCQVLLSRGASRMSLNCNGWLPLDV----ARMWGRHWLEPLLAPSS  277 (513)
Q Consensus       231 -~g~~eivk~LL~~Gad~~~~d~~G~TpL~~----A~~~g~~~iv~lL~~~~  277 (513)
                       .++.++|++|+++|++++.+|..|+||||.    |...++.+++++|....
T Consensus       375 ~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        375 NDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             ccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence             378999999999999999999999999994    23356788998887754

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.5e-30  Score=277.01  Aligned_cols=227  Identities=21%  Similarity=0.214  Sum_probs=185.9

Q ss_pred             HcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC------C
Q 010335           19 RDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAK--GHNEIVALLLENGADVNSRNYCGQTALMQACRYG------H   90 (513)
Q Consensus        19 ~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~--g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g------~   90 (513)
                      ...+.++|++||++|++++.. ..  |.||||+++..  ++.++|++|+++|+|+|.++ .+.||||.|+.++      +
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~-~~--g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~   87 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEE-YR--GNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKI   87 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccc-cC--CCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhH
Confidence            358999999999999998765 32  48998776654  37899999999999999987 5799999998765      4


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc---CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL  167 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                      .++|++|+++|++++..+. .|.||||.|+..   ++.+++++|+++|++                              
T Consensus        88 ~~iv~~Ll~~Gadin~~d~-~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad------------------------------  136 (494)
T PHA02989         88 KKIVKLLLKFGADINLKTF-NGVSPIVCFIYNSNINNCDMLRFLLSKGIN------------------------------  136 (494)
T ss_pred             HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhcccCcHHHHHHHHHCCCC------------------------------
Confidence            7899999999999999886 899999998765   689999999998765                              


Q ss_pred             HHhc-ccccCCCCcHHHHHHHc--CCHHHHHHHHHcCCCccc-ccccCCccccccCCCCchhHHHhhCC----CHHHHHH
Q 010335          168 SKFV-NKAADGGITALHMAALN--GYFDCVQLLLDLHANVSA-VTFHYGTSMDLIGAGSTPLHFAACGG----NLKCCQV  239 (513)
Q Consensus       168 ~~~i-~~~d~~G~TpLh~Aa~~--g~~eiv~~Ll~~Gadvn~-~~~~~~~~~~~~~~G~TpLh~Aa~~g----~~eivk~  239 (513)
                         + +..|..|+||||+|+..  ++.++|++|+++|++++. .+..          |.||||+|+..+    +.+++++
T Consensus       137 ---in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~----------g~tpL~~a~~~~~~~~~~~iv~~  203 (494)
T PHA02989        137 ---VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLY----------GLTPMNIYLRNDIDVISIKVIKY  203 (494)
T ss_pred             ---cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccccc----------CCChHHHHHhcccccccHHHHHH
Confidence               5 56788999999998764  689999999999999998 4444          899999987654    8899999


Q ss_pred             HHHCCCCCCC--------------------------------------cCCCCCcHHHHHHHcCccchhhhcCCC-CCCC
Q 010335          240 LLSRGASRMS--------------------------------------LNCNGWLPLDVARMWGRHWLEPLLAPS-SDAV  280 (513)
Q Consensus       240 LL~~Gad~~~--------------------------------------~d~~G~TpL~~A~~~g~~~iv~lL~~~-~~~~  280 (513)
                      |+++|++++.                                      +|..|+||||+|+..|+.+++++|++. ++++
T Consensus       204 Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin  283 (494)
T PHA02989        204 LIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY  283 (494)
T ss_pred             HHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc
Confidence            9998887654                                      455689999999999998888877664 4434


Q ss_pred             CCCCCCCCccccchhHH
Q 010335          281 MPRFHPSNYLSLPLLSV  297 (513)
Q Consensus       281 ~~~~~~~~~~~~~l~~~  297 (513)
                      ..    +..+.+|+..+
T Consensus       284 ~~----d~~G~TpL~~A  296 (494)
T PHA02989        284 NV----SKDGDTVLTYA  296 (494)
T ss_pred             cc----CCCCCCHHHHH
Confidence            33    55666775443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=7.3e-31  Score=259.26  Aligned_cols=217  Identities=30%  Similarity=0.369  Sum_probs=191.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCC---ccccCCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCC--------CCCCChH
Q 010335           14 LVSAARDGDFVEAKMLLDCNPCL---AKYSTFGGLNSPLHFAAAKGHNEIVALLLE-NGADVNSR--------NYCGQTA   81 (513)
Q Consensus        14 L~~Aa~~G~~e~vk~LL~~~~~~---~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~--------d~~g~Tp   81 (513)
                      .+.|++.|.+..++.|+-+..+.   .......+|.|||.+||++||.++|++|++ .++++...        ...|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            45899999999999998764422   122333445799999999999999999999 56766543        3468899


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhh
Q 010335           82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK  161 (513)
Q Consensus        82 Lh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (513)
                      |..|+-.||+++||.|+.+|+++|.... ...|||..|+..|+.+++++|++++++                        
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~-TNStPLraACfDG~leivKyLvE~gad------------------------  142 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDTTR-TNSTPLRAACFDGHLEIVKYLVEHGAD------------------------  142 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccccc-cCCccHHHHHhcchhHHHHHHHHcCCC------------------------
Confidence            9999999999999999999999998875 677999999999999999999998775                        


Q ss_pred             hchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335          162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  241 (513)
Q Consensus       162 ~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL  241 (513)
                               ++..+..|.|-||+|+.+||.+|+++|++.|+|+|.++..          |+|+||.+++.|+.+++|+|+
T Consensus       143 ---------~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~k----------GNTALH~caEsG~vdivq~Ll  203 (615)
T KOG0508|consen  143 ---------PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYK----------GNTALHDCAESGSVDIVQLLL  203 (615)
T ss_pred             ---------CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhccc----------CchHHHhhhhcccHHHHHHHH
Confidence                     6778899999999999999999999999999999999987          999999999999999999999


Q ss_pred             HCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335          242 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  275 (513)
Q Consensus       242 ~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~  275 (513)
                      .+|+.+. +|..|.|||..|+..|+..++++|..
T Consensus       204 ~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  204 KHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hCCceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999875 46679999999999999999988874

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=5.8e-30  Score=263.23  Aligned_cols=206  Identities=28%  Similarity=0.279  Sum_probs=187.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           46 NSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      ..-++.|++.|+++.|+.|++. |.+++..|.+|.|+||+|+.+++++++++|+++|+++|.....-+.||||||+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            4678999999999999999998 999999999999999999999999999999999999999987789999999999999


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      +.++.+|+++|++                                 ++.+|..|.|+||+|+..|+.-+|-+||.+|+|+
T Consensus       125 ~~vv~lLlqhGAd---------------------------------pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~  171 (600)
T KOG0509|consen  125 ISVVDLLLQHGAD---------------------------------PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI  171 (600)
T ss_pred             HHHHHHHHHcCCC---------------------------------CceecCCCCcHHHHHHHhCchHHHHHHHHhcccC
Confidence            9999999999886                                 7788999999999999999999999999999999


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcC-CCCCcHHHHHHHcCccchhhhcCCCCCCCCCC
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN-CNGWLPLDVARMWGRHWLEPLLAPSSDAVMPR  283 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d-~~G~TpL~~A~~~g~~~iv~lL~~~~~~~~~~  283 (513)
                      +.+|.+          |+||||+|+..|....+..|+..|++++.+| ..|.||||+|+..|+..++.+|.+++...-..
T Consensus       172 d~~D~~----------grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~  241 (600)
T KOG0509|consen  172 DLRDNN----------GRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKT  241 (600)
T ss_pred             CCcCCC----------CCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCccccc
Confidence            999987          9999999999999999999999999999988 99999999999999999888776665443222


Q ss_pred             CCCCCccccchhHH
Q 010335          284 FHPSNYLSLPLLSV  297 (513)
Q Consensus       284 ~~~~~~~~~~l~~~  297 (513)
                         +..+.+|+.-+
T Consensus       242 ---~~~g~tp~~LA  252 (600)
T KOG0509|consen  242 ---NTNGKTPFDLA  252 (600)
T ss_pred             ---ccCCCCHHHHH
Confidence               33366665543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.3e-29  Score=238.80  Aligned_cols=175  Identities=18%  Similarity=0.178  Sum_probs=156.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG--HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN  122 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g--~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~  122 (513)
                      +.||||+|+..|++++|+.|++.   ++..|..|.||||+|+.++  +.+++++|+++|++++..+...|.||||+|+..
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~   97 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSF   97 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh
Confidence            47999999999999999999975   5678889999999999865  899999999999999988655799999998763


Q ss_pred             ---CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHH--cCCHHHHHHH
Q 010335          123 ---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL--NGYFDCVQLL  197 (513)
Q Consensus       123 ---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~--~g~~eiv~~L  197 (513)
                         ++.+++++|++++.+                                 ++.+|..|.||||+|+.  .++.+++++|
T Consensus        98 ~~~~~~eiv~~Ll~~gad---------------------------------in~~d~~G~TpLh~a~~~~~~~~~iv~~L  144 (209)
T PHA02859         98 NKNVEPEILKILIDSGSS---------------------------------ITEEDEDGKNLLHMYMCNFNVRINVIKLL  144 (209)
T ss_pred             CccccHHHHHHHHHCCCC---------------------------------CCCcCCCCCCHHHHHHHhccCCHHHHHHH
Confidence               479999999988765                                 77888999999999876  4689999999


Q ss_pred             HHcCCCcccccccCCccccccCCCCchhHH-HhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335          198 LDLHANVSAVTFHYGTSMDLIGAGSTPLHF-AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  265 (513)
Q Consensus       198 l~~Gadvn~~~~~~~~~~~~~~~G~TpLh~-Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g  265 (513)
                      +++|++++.++..          |.||||. |+..++.+++++|+++|++++.+|..|+|||++|+..+
T Consensus       145 i~~gadin~~d~~----------g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        145 IDSGVSFLNKDFD----------NNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHcCCCcccccCC----------CCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999977          9999995 66788999999999999999999999999999998765

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=264.85  Aligned_cols=259  Identities=24%  Similarity=0.317  Sum_probs=200.0

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      -.++|.|+..|+++.++.|++++.+++..+..  +.||||.|+..++.|..+.|++.|+|+-..|.+|.+|+|.|++.|.
T Consensus       122 ~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~--~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s  199 (929)
T KOG0510|consen  122 NAPLHLAADSGNYSCLKLLLDYGADVNLEDEN--GFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGS  199 (929)
T ss_pred             cCchhhccccchHHHHHHHHHhcCCccccccC--CCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcc
Confidence            45789999999999999999999777654443  4899999999999998889999999998888889999999999999


Q ss_pred             HHHHHHHHh-----cCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccc------------------cchhh
Q 010335           91 WEVVQTLLL-----FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE------------------VMNTQ  147 (513)
Q Consensus        91 ~eiVk~LL~-----~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~------------------~~~~~  147 (513)
                      .|..+..+.     .+..++..++ .|.||||.|+..|+.++++.+++.+.......                  ....+
T Consensus       200 ~e~mEi~l~~~g~~r~~~in~~~n-~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH  278 (929)
T KOG0510|consen  200 KECMEIFLPEHGYERQTHINFDNN-EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLH  278 (929)
T ss_pred             hhhhhhhhccccchhhcccccccC-CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHH
Confidence            888888887     5666776665 78888999988888888888887766544332                  11112


Q ss_pred             hcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHH-cC-CCcccccccCCccccccCCCCchh
Q 010335          148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD-LH-ANVSAVTFHYGTSMDLIGAGSTPL  225 (513)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~-~G-advn~~~~~~~~~~~~~~~G~TpL  225 (513)
                      .+...+....+.   ........++.++.++.||||.||.+|+.+.|+.||+ .| ...|..|..          |.|||
T Consensus       279 ~a~r~G~~~svd---~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~----------g~tpL  345 (929)
T KOG0510|consen  279 YAARQGGPESVD---NLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH----------GMTPL  345 (929)
T ss_pred             HHHHcCChhHHH---HHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccccc----------CCCch
Confidence            222222222111   1122334478888999999999999999999999998 33 345666655          99999


Q ss_pred             HHHhhCCCHHHHHHHHHCCCCCC---CcCCCCCcHHHHHHHcCccchhhhcCC-CCCCCCCCCC
Q 010335          226 HFAACGGNLKCCQVLLSRGASRM---SLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFH  285 (513)
Q Consensus       226 h~Aa~~g~~eivk~LL~~Gad~~---~~d~~G~TpL~~A~~~g~~~iv~lL~~-~~~~~~~~~~  285 (513)
                      |+|++.||..++++||++||+..   ..|.+|.||||+|+..|+..++++|.. ++++......
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~  409 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKK  409 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccc
Confidence            99999999999999999999987   459999999999999999887765554 5555454433

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.4e-29  Score=270.89  Aligned_cols=220  Identities=17%  Similarity=0.077  Sum_probs=178.8

Q ss_pred             HHHHHHHHhcCCCCccccCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH----HHH
Q 010335           23 FVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE----VVQ   95 (513)
Q Consensus        23 ~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~e----iVk   95 (513)
                      ++.||.||.++...+..  +..|+||||+|+..   |+.++|++||+.|++++.+|..|.||||+|+..|+.+    +++
T Consensus        12 ~~~~~~l~~~~~~~~~~--d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDPNDTR--NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCccccc--CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            67889999877666433  33449999998665   8899999999999999999999999999999999955    567


Q ss_pred             HHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhccccc
Q 010335           96 TLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA  175 (513)
Q Consensus        96 ~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  175 (513)
                      .|++.+...+..   ...+++++|+.+++.+++++|+++|++                                 ++.+|
T Consensus        90 ~Ll~~~~~~n~~---~~~~~~~~a~~~~~~e~vk~Ll~~Gad---------------------------------in~~d  133 (661)
T PHA02917         90 ALLEATGYSNIN---DFNIFSYMKSKNVDVDLIKVLVEHGFD---------------------------------LSVKC  133 (661)
T ss_pred             HHHhccCCCCCC---CcchHHHHHhhcCCHHHHHHHHHcCCC---------------------------------CCccC
Confidence            888765433332   234778889999999999999998875                                 78889


Q ss_pred             CCCCcHHHHHH--HcCCHHHHHHHHHcCCCcccccccC--Ccccc--ccCCCCchhHHHhh-----------CCCHHHHH
Q 010335          176 DGGITALHMAA--LNGYFDCVQLLLDLHANVSAVTFHY--GTSMD--LIGAGSTPLHFAAC-----------GGNLKCCQ  238 (513)
Q Consensus       176 ~~G~TpLh~Aa--~~g~~eiv~~Ll~~Gadvn~~~~~~--~~~~~--~~~~G~TpLh~Aa~-----------~g~~eivk  238 (513)
                      ..|.||||.|+  .+|+.++|++|+++|++++..+...  |...+  ....+.||||+|+.           +++.++|+
T Consensus       134 ~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~  213 (661)
T PHA02917        134 ENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVK  213 (661)
T ss_pred             CCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHH
Confidence            99999999653  5789999999999999998765321  11000  11235799999986           56899999


Q ss_pred             HHHHCCCCCCCcCCCCCcHHHHHHHcCcc--chhhhcCCCCCCC
Q 010335          239 VLLSRGASRMSLNCNGWLPLDVARMWGRH--WLEPLLAPSSDAV  280 (513)
Q Consensus       239 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~--~iv~lL~~~~~~~  280 (513)
                      +|+++|||++.+|.+|+||||+|+..|+.  +++++|.++++..
T Consensus       214 ~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~  257 (661)
T PHA02917        214 CLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNT  257 (661)
T ss_pred             HHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCccc
Confidence            99999999999999999999999999985  6999998877654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=9.1e-29  Score=270.18  Aligned_cols=279  Identities=18%  Similarity=0.123  Sum_probs=193.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCC---CC--------
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA--AKGHNEIVALLLENGADVNSRNY---CG--------   78 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa--~~g~~eivk~LL~~Gadvn~~d~---~g--------   78 (513)
                      .+++.|+..|++++|++|+++|++++.....+  .||||+|+  ..|+.++|++|+++|+++|..|.   .|        
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g--~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENH--RSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCC--ccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccc
Confidence            56778999999999999999999998665554  99999654  47899999999999999987653   34        


Q ss_pred             ---ChHHHHHHH-----------cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH--HHHHHHHHccCCCCc--
Q 010335           79 ---QTALMQACR-----------YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV--RCIRLVVADFVPSVP--  140 (513)
Q Consensus        79 ---~TpLh~A~~-----------~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~--~iv~~Ll~~~~~~~~--  140 (513)
                         .||||+|+.           +++.++|++|+++|++++..+. +|.||||+|+.+|+.  ++|++|++ +.....  
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~-~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~  260 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDK-NYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYS  260 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCC-CCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccc
Confidence               599999986           5689999999999999999886 999999999999985  79999985 432210  


Q ss_pred             -----cccchhhhcccCCCCchhhhhhchhHHHHhcccc-------------------------cCCCCcHHHHHH---H
Q 010335          141 -----FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA-------------------------ADGGITALHMAA---L  187 (513)
Q Consensus       141 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------------d~~G~TpLh~Aa---~  187 (513)
                           ......................+...+..++...                         ...+.++||.+.   .
T Consensus       261 ~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  340 (661)
T PHA02917        261 YIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMT  340 (661)
T ss_pred             cccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHH
Confidence                 1010000000000000000000001111111111                         112344544433   4


Q ss_pred             cCC--HHHHHHHHHcCCCcccccccCCccc--------------------cccCCCCchhHHHhhCC-------------
Q 010335          188 NGY--FDCVQLLLDLHANVSAVTFHYGTSM--------------------DLIGAGSTPLHFAACGG-------------  232 (513)
Q Consensus       188 ~g~--~eiv~~Ll~~Gadvn~~~~~~~~~~--------------------~~~~~G~TpLh~Aa~~g-------------  232 (513)
                      .|.  .++|++|+++||+++..+.+..+..                    .....|.||||.|++.+             
T Consensus       341 ~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~  420 (661)
T PHA02917        341 FGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKK  420 (661)
T ss_pred             cCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhh
Confidence            665  5699999999999998765533321                    11134999999998543             


Q ss_pred             ----------CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC-CCCCCCCCCCCCccccchhHHH
Q 010335          233 ----------NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVL  298 (513)
Q Consensus       233 ----------~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~~l  298 (513)
                                ..+++++|+++|||++.+|..|+||||+|+..++.+++++|... ++.+..    +..+.+|+..+.
T Consensus       421 ~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~----d~~G~T~L~~A~  493 (661)
T PHA02917        421 GLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIR----SNNGYTCIAIAI  493 (661)
T ss_pred             ccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCC----CCCCCCHHHHHH
Confidence                      35678999999999999999999999999999999888776654 444443    556677765544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=3.8e-30  Score=284.40  Aligned_cols=256  Identities=28%  Similarity=0.335  Sum_probs=206.7

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      +.+..+++.|+++|+.+.++.++..|.+.+....  .|.||||.|+..++.++|+.++++|++++..+..|+||+|+|++
T Consensus       372 ~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk--~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~  449 (1143)
T KOG4177|consen  372 EKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGK--NGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAK  449 (1143)
T ss_pred             ccCCcchhhhcccCchhHHHhhhhccCCcccCCC--CCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhh
Confidence            3455688888899999999998888888554333  34899999999999999999999999999999999999999999


Q ss_pred             cC-CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccc---cchhhhcccCCCCchhhhhhc
Q 010335           88 YG-HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE---VMNTQIEGDRGDGSSVKSKCD  163 (513)
Q Consensus        88 ~g-~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  163 (513)
                      .| +.+++..++++|++++.... .|.||||.|+..|+.++++.|++.........   ....+......   .......
T Consensus       450 ~g~~~~~~~~l~~~g~~~n~~s~-~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~---~v~~~~~  525 (1143)
T KOG4177|consen  450 KGRYLQIARLLLQYGADPNAVSK-QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED---TVKVAKI  525 (1143)
T ss_pred             cccHhhhhhhHhhcCCCcchhcc-ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh---hHHHHHH
Confidence            99 88899999999999998885 89999999999999999999997663322211   11111111111   1111111


Q ss_pred             hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335          164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  243 (513)
                      .......++.++..|+||||.|+.+|++++|++||++|+|++.+++.          |+||||.|+..|+.+++.+|+++
T Consensus       526 l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~----------G~TPLH~Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  526 LLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKL----------GYTPLHQAAQQGHNDIAELLLKH  595 (1143)
T ss_pred             HhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCC----------CCChhhHHHHcChHHHHHHHHHc
Confidence            11223346778889999999999999999999999999999999966          99999999999999999999999


Q ss_pred             CCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC
Q 010335          244 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  279 (513)
Q Consensus       244 Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~  279 (513)
                      ||++|..|.+|.|||++|+..|+..++++|......
T Consensus       596 GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  596 GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             CCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            999999999999999999999999999888766555

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.7e-28  Score=262.63  Aligned_cols=230  Identities=17%  Similarity=0.149  Sum_probs=186.2

Q ss_pred             CCCcHHHHHHHHc-----CCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCC
Q 010335            8 SASGERLVSAARD-----GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG---HNEIVALLLENGADVNSRNYCGQ   79 (513)
Q Consensus         8 s~~~~~L~~Aa~~-----G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g---~~eivk~LL~~Gadvn~~d~~g~   79 (513)
                      ..+.+|||.|+..     +..++++.|+++|++++..+..+  .||||+|+..+   +.+++++|+++|+|++.+|..|.
T Consensus        69 ~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G--~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~  146 (489)
T PHA02798         69 NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDG--ETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGF  146 (489)
T ss_pred             CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCc--CcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCC
Confidence            3456899998864     77999999999999998766554  99999999986   78999999999999999999999


Q ss_pred             hHHHHHHHcCC---HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc----CCHHHHHHHHHccCCCCccccchh---h--
Q 010335           80 TALMQACRYGH---WEVVQTLLLFRCNVTRADYLSGRTALHFAAVN----GHVRCIRLVVADFVPSVPFEVMNT---Q--  147 (513)
Q Consensus        80 TpLh~A~~~g~---~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~----g~~~iv~~Ll~~~~~~~~~~~~~~---~--  147 (513)
                      ||||+|++.|+   .+++++|+++|++++..++..|.||||.++..    ++.+++++|+++|...........   .  
T Consensus       147 tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~  226 (489)
T PHA02798        147 TMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEY  226 (489)
T ss_pred             cHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHH
Confidence            99999999998   99999999999999988766899999999765    489999999999875433211000   0  


Q ss_pred             ---hc-ccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCc
Q 010335          148 ---IE-GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST  223 (513)
Q Consensus       148 ---~~-~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~T  223 (513)
                         .. ............   ......++.+|..|+||||+|+..|+.+++++|+++|+|++..+..          |.|
T Consensus       227 l~~l~~~~~~~~~~i~~~---l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~----------G~T  293 (489)
T PHA02798        227 LNSLLYDNKRFKKNILDF---IFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITEL----------GNT  293 (489)
T ss_pred             HHHHHhhcccchHHHHHH---HHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCC----------CCc
Confidence               00 000000000000   0111357889999999999999999999999999999999999977          999


Q ss_pred             hhHHHhhCCCHHHHHHHHHCCCCCCCcCC
Q 010335          224 PLHFAACGGNLKCCQVLLSRGASRMSLNC  252 (513)
Q Consensus       224 pLh~Aa~~g~~eivk~LL~~Gad~~~~d~  252 (513)
                      |||+|+..++.++++.|+++|++++..+.
T Consensus       294 pL~~A~~~~~~~iv~~lL~~~~~~~~i~~  322 (489)
T PHA02798        294 CLFTAFENESKFIFNSILNKKPNKNTISY  322 (489)
T ss_pred             HHHHHHHcCcHHHHHHHHccCCCHHHHHH
Confidence            99999999999999999999999875543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=251.38  Aligned_cols=206  Identities=14%  Similarity=0.076  Sum_probs=178.2

Q ss_pred             HHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCChHHHHHHH--cCCHHHHHHH
Q 010335           26 AKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN------SRNYCGQTALMQACR--YGHWEVVQTL   97 (513)
Q Consensus        26 vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn------~~d~~g~TpLh~A~~--~g~~eiVk~L   97 (513)
                      -++++.+|.+++.+..++       +|+..+..|++++|+.+|+++|      .++..++|+||.|+.  +|+.++|++|
T Consensus        65 ~~~~~~~~~~i~~~~~~~-------~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-------LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-------HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            467888998887655443       8999999999999999999998      788889999999999  8999999999


Q ss_pred             HhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCC
Q 010335           98 LLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG  177 (513)
Q Consensus        98 L~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  177 (513)
                      +++||+++..   ++.||||+|+..++.+++++|+++|++.....                           ..+..+..
T Consensus       138 I~~GADIn~~---~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~---------------------------~~~l~~~~  187 (437)
T PHA02795        138 VDHGAVIYKI---ECLNAYFRGICKKESSVVEFILNCGIPDENDV---------------------------KLDLYKII  187 (437)
T ss_pred             HHCCCCCCCC---CCCCHHHHHHHcCcHHHHHHHHhcCCcccccc---------------------------cchhhhhh
Confidence            9999999873   46899999999999999999999876321100                           01112234


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH
Q 010335          178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP  257 (513)
Q Consensus       178 G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp  257 (513)
                      +.|++|.|+.+++.+++++|+++|+++|.++..          |.||||+|+..|+.+++++|+++||+++.+|..|+||
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~----------G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~Tp  257 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAG----------GRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTC  257 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            679999999999999999999999999999977          9999999999999999999999999999999999999


Q ss_pred             HHHHHHcCc--------cchhhhcCCCCC
Q 010335          258 LDVARMWGR--------HWLEPLLAPSSD  278 (513)
Q Consensus       258 L~~A~~~g~--------~~iv~lL~~~~~  278 (513)
                      ||+|+..|+        .+++++|+..+.
T Consensus       258 Lh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        258 LDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             HHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            999999984        478887776543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.8e-28  Score=242.32  Aligned_cols=190  Identities=34%  Similarity=0.397  Sum_probs=170.2

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhc-CCCCc------cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDC-NPCLA------KYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQT   80 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~-~~~~~------~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~T   80 (513)
                      +.+++||..|+++|+.++|++|+++ +.+..      +....-.|-+||..|+..||+++|+.|+++|++||.......|
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt  119 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST  119 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCc
Confidence            4577999999999999999999994 43332      1112223589999999999999999999999999999888899


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhh
Q 010335           81 ALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS  160 (513)
Q Consensus        81 pLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (513)
                      ||-.||..|++++||+|+++|+|++..+. .|.|.||+|++.||.+++++|++.+++                       
T Consensus       120 PLraACfDG~leivKyLvE~gad~~Ianr-hGhTcLmIa~ykGh~~I~qyLle~gAD-----------------------  175 (615)
T KOG0508|consen  120 PLRAACFDGHLEIVKYLVEHGADPEIANR-HGHTCLMIACYKGHVDIAQYLLEQGAD-----------------------  175 (615)
T ss_pred             cHHHHHhcchhHHHHHHHHcCCCCccccc-CCCeeEEeeeccCchHHHHHHHHhCCC-----------------------
Confidence            99999999999999999999999999886 999999999999999999999988765                       


Q ss_pred             hhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHH
Q 010335          161 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  240 (513)
Q Consensus       161 ~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L  240 (513)
                                +|.++..|+|+||.++..|+++++++|+.+|+.+..-.           .|.|||..|+..|+.++|.+|
T Consensus       176 ----------vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~-----------~GmtPL~~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  176 ----------VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDG-----------HGMTPLLLAAVTGHTDIVERL  234 (615)
T ss_pred             ----------cchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecC-----------CCCchHHHHhhhcchHHHHHH
Confidence                      88899999999999999999999999999999875433           399999999999999999999


Q ss_pred             HH
Q 010335          241 LS  242 (513)
Q Consensus       241 L~  242 (513)
                      ++
T Consensus       235 ~~  236 (615)
T KOG0508|consen  235 LQ  236 (615)
T ss_pred             hc
Confidence            95

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.8e-27  Score=249.40  Aligned_cols=275  Identities=12%  Similarity=0.053  Sum_probs=200.7

Q ss_pred             HHHHH-HHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHH-cCCHHHHHHHHHCCCCCC-----------------
Q 010335           12 ERLVS-AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAA-KGHNEIVALLLENGADVN-----------------   72 (513)
Q Consensus        12 ~~L~~-Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~-~g~~eivk~LL~~Gadvn-----------------   72 (513)
                      ++++. |...|++|+|++|+++|++++....  ++.||||+|+. .+++|++++|+++|+|++                 
T Consensus        73 ~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n--~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~  150 (631)
T PHA02792         73 DIFEYLCSDNIDIELLKLLISKGLEINSIKN--GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRA  150 (631)
T ss_pred             cHHHHHHHhcccHHHHHHHHHcCCCcccccC--CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccc
Confidence            35544 7888999999999999999986543  35899999976 699999999999998732                 


Q ss_pred             -------------------CCCCCCChHHHHHHHcC-------CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC--C
Q 010335           73 -------------------SRNYCGQTALMQACRYG-------HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--H  124 (513)
Q Consensus        73 -------------------~~d~~g~TpLh~A~~~g-------~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g--~  124 (513)
                                         ..|..|.||||+|+.++       +.|+++.|+.+|++++..+. .|.||||+|+.+.  .
T Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~-~g~t~l~~~~~~~~i~  229 (631)
T PHA02792        151 EYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTY-REHTTLYYYVDKCDIK  229 (631)
T ss_pred             cccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCC-CCChHHHHHHHcccch
Confidence                               34556999999999999       89999999999999999886 8999999999999  8


Q ss_pred             HHHHHHHHHccCCCCc-------------------cc--cchhhhcccC--CC---------Cchh--h-hhh---chh-
Q 010335          125 VRCIRLVVADFVPSVP-------------------FE--VMNTQIEGDR--GD---------GSSV--K-SKC---DQS-  165 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~-------------------~~--~~~~~~~~~~--~~---------~~~~--~-~~~---~~~-  165 (513)
                      .+++++|++.......                   ..  .....+....  +.         ....  . ...   .+. 
T Consensus       230 ~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~  309 (631)
T PHA02792        230 REIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDL  309 (631)
T ss_pred             HHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHH
Confidence            9999999864221100                   00  0000000000  00         0000  0 000   000 


Q ss_pred             -------------HHHHhcccc----cCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHH
Q 010335          166 -------------ALSKFVNKA----ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  228 (513)
Q Consensus       166 -------------~~~~~i~~~----d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  228 (513)
                                   .++.++...    ...+...++.|+..|+.++|++|+++|||++..+..        +.+.||||+|
T Consensus       310 l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~--------g~~~TpLh~A  381 (631)
T PHA02792        310 LSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDN--------IINIMPLFPT  381 (631)
T ss_pred             HHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCC--------CCChhHHHHH
Confidence                         011111111    113566799999999999999999999999998865        2357999998


Q ss_pred             hhCCCHH---HHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC-CCCCCCCCCccccchhHHHHHH
Q 010335          229 ACGGNLK---CCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA-VMPRFHPSNYLSLPLLSVLNVA  301 (513)
Q Consensus       229 a~~g~~e---ivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~-~~~~~~~~~~~~~~l~~~l~~a  301 (513)
                      ...+..+   ++++|+++|||+|.+|..|+||||+|+..++.+++++|...+.. +.    .+..+.+|+..+...+
T Consensus       382 ~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~----kD~~G~TpL~~A~~~~  454 (631)
T PHA02792        382 LSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI----TTKYGSTCIGICVILA  454 (631)
T ss_pred             HHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHHH
Confidence            8877654   68999999999999999999999999999999999888776433 32    2667778877665433

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.6e-27  Score=223.79  Aligned_cols=174  Identities=18%  Similarity=0.192  Sum_probs=151.8

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCC-CCCChHHHHHH
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG--HNEIVALLLENGADVNSRN-YCGQTALMQAC   86 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~   86 (513)
                      ..++|+.|++.|++++|+.|++...   ..  +..|.||||+|+..+  +.+++++|+++|+++|.++ ..|.||||+|+
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~~n---~~--~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKFVN---DC--NDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHhhh---cc--CccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            3578999999999999999998632   22  233489999999855  8999999999999999997 58999999988


Q ss_pred             Hc---CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH--cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhh
Q 010335           87 RY---GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV--NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK  161 (513)
Q Consensus        87 ~~---g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (513)
                      ..   ++.+++++|+++|++++..+. .|.||||+|+.  .++.+++++|++.+..                        
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~-~G~TpLh~a~~~~~~~~~iv~~Li~~gad------------------------  150 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDE-DGKNLLHMYMCNFNVRINVIKLLIDSGVS------------------------  150 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhccCCHHHHHHHHHcCCC------------------------
Confidence            64   479999999999999999886 99999999986  4689999999987754                        


Q ss_pred             hchhHHHHhcccccCCCCcHHHH-HHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCC
Q 010335          162 CDQSALSKFVNKAADGGITALHM-AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  232 (513)
Q Consensus       162 ~~~~~~~~~i~~~d~~G~TpLh~-Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g  232 (513)
                               ++.+|..|.||||. |+..++.+++++|+++|++++.++..          |.||||+|+..+
T Consensus       151 ---------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~----------g~tpl~la~~~~  203 (209)
T PHA02859        151 ---------FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKS----------GYNCYDLIKFRN  203 (209)
T ss_pred             ---------cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHhhhh
Confidence                     67788899999996 56788999999999999999999976          999999998754

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=7.9e-27  Score=249.46  Aligned_cols=282  Identities=12%  Similarity=0.086  Sum_probs=201.3

Q ss_pred             CCcHHHHHHHHcC---CHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCC--CCCCCCCCChH
Q 010335            9 ASGERLVSAARDG---DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG--HNEIVALLLENGAD--VNSRNYCGQTA   81 (513)
Q Consensus         9 ~~~~~L~~Aa~~G---~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~eivk~LL~~Gad--vn~~d~~g~Tp   81 (513)
                      .+.++||.|+..|   +.++|++||++|++++..+..  |.||||+|+..+  +.++|++|++.|++  ++..+.-+.+|
T Consensus        40 ~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~--G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~  117 (672)
T PHA02730         40 RGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNE--GLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFD  117 (672)
T ss_pred             CCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCC--CCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCch
Confidence            3578999999997   599999999999999865544  499999999977  79999999999664  47777779999


Q ss_pred             HHHHHH--cCCHHHHHHHHh-cCCCCCcccC----CCCCcHHHHHHHcCCHHHHHHHHHccCCCCcccc----chhhh--
Q 010335           82 LMQACR--YGHWEVVQTLLL-FRCNVTRADY----LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEV----MNTQI--  148 (513)
Q Consensus        82 Lh~A~~--~g~~eiVk~LL~-~ga~~~~~~~----~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~----~~~~~--  148 (513)
                      |+.++.  +++.++|++|+. .+++++...+    ..|.+|+++|...++.++|++|+++|........    .....  
T Consensus       118 l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~  197 (672)
T PHA02730        118 LYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCK  197 (672)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccc
Confidence            999988  899999999996 6778776632    3789999999999999999999999887632211    00000  


Q ss_pred             --------cccCCCCchhhhhhchhHHHHhcccccCCCCcHHHH--HHHcCCHHHHHHHHH-------------------
Q 010335          149 --------EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM--AALNGYFDCVQLLLD-------------------  199 (513)
Q Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~--Aa~~g~~eiv~~Ll~-------------------  199 (513)
                              ......................++.+|..|.||||+  |...|+.|+|++|++                   
T Consensus       198 ~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~  277 (672)
T PHA02730        198 NSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGV  277 (672)
T ss_pred             hhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhh
Confidence                    000000000000000111223478899999999995  555677999999999                   


Q ss_pred             -------------cCCCcccccccC--Ccc-cc-------ccCCCCc---------------------hhHHHhhCC---
Q 010335          200 -------------LHANVSAVTFHY--GTS-MD-------LIGAGST---------------------PLHFAACGG---  232 (513)
Q Consensus       200 -------------~Gadvn~~~~~~--~~~-~~-------~~~~G~T---------------------pLh~Aa~~g---  232 (513)
                                   +|+|+...+..-  +.+ .+       ....|.+                     .||.=..++   
T Consensus       278 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v  357 (672)
T PHA02730        278 LADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMV  357 (672)
T ss_pred             HHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcC
Confidence                         677775522110  000 00       1122433                     677766655   


Q ss_pred             CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCc----cchhhhcCCCCC-CCCCCCCCCCccccchh
Q 010335          233 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR----HWLEPLLAPSSD-AVMPRFHPSNYLSLPLL  295 (513)
Q Consensus       233 ~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~----~~iv~lL~~~~~-~~~~~~~~~~~~~~~l~  295 (513)
                      +.+++++|+++||+++.. ..|+||||+|+..++    .+++++|..++. .++.  ..+..+.+|+.
T Consensus       358 ~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN--~kd~~G~T~Lh  422 (672)
T PHA02730        358 SIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN--HVSNNGRLCMY  422 (672)
T ss_pred             cHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc--ccccCCCchHh
Confidence            689999999999999986 799999999998875    699999987653 2332  12455667764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.9e-27  Score=240.36  Aligned_cols=189  Identities=22%  Similarity=0.149  Sum_probs=168.2

Q ss_pred             HHHHcCCHHHHHHHHhcCCCCc------cccCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335           16 SAARDGDFVEAKMLLDCNPCLA------KYSTFGGLNSPLHFAAA--KGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus        16 ~Aa~~G~~e~vk~LL~~~~~~~------~~~~~~~g~TpLh~Aa~--~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      .|+..+..|+++.|+.+|.+++      .+..  .++|+||+|+.  .|+.++|++|+++|||++..  ++.||||.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~--~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCN--SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccc--cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHH
Confidence            7899999999999999999977      3323  34999999999  99999999999999999985  45899999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccC-----CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhh
Q 010335           88 YGHWEVVQTLLLFRCNVTRADY-----LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC  162 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~-----~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (513)
                      .|+.++|++|+.+|++......     ..+.|++|.|...++.+++++|++++++                         
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-------------------------  213 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-------------------------  213 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-------------------------
Confidence            9999999999999985433221     2478999999999999999999988765                         


Q ss_pred             chhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC--------H
Q 010335          163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN--------L  234 (513)
Q Consensus       163 ~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~--------~  234 (513)
                              ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+        .
T Consensus       214 --------IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~----------G~TpLh~Aa~~g~~~~~~~~~~  275 (437)
T PHA02795        214 --------INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSN----------GYTCLDVAVDRGSVIARRETHL  275 (437)
T ss_pred             --------cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCCcccccccHH
Confidence                    7888999999999999999999999999999999999977          9999999999984        6


Q ss_pred             HHHHHHHHCCCCCCCcC
Q 010335          235 KCCQVLLSRGASRMSLN  251 (513)
Q Consensus       235 eivk~LL~~Gad~~~~d  251 (513)
                      +++++|+++|++++..+
T Consensus       276 eIvelLL~~gadI~~~~  292 (437)
T PHA02795        276 KILEILLREPLSIDCIK  292 (437)
T ss_pred             HHHHHHHhCCCCCCchh
Confidence            99999999999987654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=6.6e-28  Score=266.78  Aligned_cols=281  Identities=30%  Similarity=0.311  Sum_probs=223.7

Q ss_pred             CCCCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 010335            6 GCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQA   85 (513)
Q Consensus         6 g~s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A   85 (513)
                      +...+.++||.|++.|+.+++.+|++.++.-.....  .+.||+|.|+..|..+++++|+..|+++|.++..|.||||.|
T Consensus       337 ar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~--k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~a  414 (1143)
T KOG4177|consen  337 ARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEE--KGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVA  414 (1143)
T ss_pred             cCcCCcccccHhhhhhhHHHHHHhhccccccCcccc--cCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeeh
Confidence            345667899999999999988888888776544333  348999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHHccCCCCcc---ccchhhhcccCCCCchhhhh
Q 010335           86 CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG-HVRCIRLVVADFVPSVPF---EVMNTQIEGDRGDGSSVKSK  161 (513)
Q Consensus        86 ~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g-~~~iv~~Ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  161 (513)
                      +.+++..+|+.+++.|++.+..+. .|+|++|+|+..| ..++...++..+.+....   ......++...+........
T Consensus       415 a~~~~~~~v~l~l~~gA~~~~~~~-lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~ll  493 (1143)
T KOG4177|consen  415 AHYGNPRVVKLLLKRGASPNAKAK-LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLL  493 (1143)
T ss_pred             hhccCcceEEEEeccCCChhhHhh-cCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHh
Confidence            999999999999999999999886 8899999999999 888888888776654322   12222223333322222211


Q ss_pred             hchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335          162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  241 (513)
Q Consensus       162 ~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL  241 (513)
                      ....   ..++.....|.|+||+|+..+++.+++.|+++|++++.++..          |.||||+|+.+|+..+||+||
T Consensus       494 le~~---~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r----------~~TpLh~A~~~g~v~~VkfLL  560 (1143)
T KOG4177|consen  494 LEGG---ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGR----------GYTPLHVAVHYGNVDLVKFLL  560 (1143)
T ss_pred             hhcC---CccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhccc----------ccchHHHHHhcCCchHHHHhh
Confidence            1111   224555667889999999999999999999999999999876          999999999999999999999


Q ss_pred             HCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC-CCCCCCCCCCccccchhHHHHHHHHhCCCCCC
Q 010335          242 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD-AVMPRFHPSNYLSLPLLSVLNVARECGLLSST  310 (513)
Q Consensus       242 ~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~-~~~~~~~~~~~~~~~l~~~l~~a~e~g~~~~~  310 (513)
                      ++|||++.+++.|+||||.|+..|+.+++.+|.+++. ++..    +..+.+|    +++|.+.|..++.
T Consensus       561 e~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~----d~~g~Tp----L~iA~~lg~~~~~  622 (1143)
T KOG4177|consen  561 EHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAA----DLDGFTP----LHIAVRLGYLSVV  622 (1143)
T ss_pred             hCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcc----cccCcch----hHHHHHhcccchh
Confidence            9999999999999999999999999999988877554 4444    4445555    6667777665544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.6e-26  Score=247.09  Aligned_cols=216  Identities=19%  Similarity=0.209  Sum_probs=181.0

Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHH--HHHcCCHHHHHHHHH-----------------------------
Q 010335           18 ARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHF--AAAKGHNEIVALLLE-----------------------------   66 (513)
Q Consensus        18 a~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~--Aa~~g~~eivk~LL~-----------------------------   66 (513)
                      ...++.|+++.||++|++++.....|  .||||+  |...|+.|+|++|++                             
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~~G--~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDEGG--SLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR  287 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence            56789999999999999998766555  999995  555678999999999                             


Q ss_pred             ---CCCCCCC--------------------CCCCCCh---------------------HHHHHHHcC---CHHHHHHHHh
Q 010335           67 ---NGADVNS--------------------RNYCGQT---------------------ALMQACRYG---HWEVVQTLLL   99 (513)
Q Consensus        67 ---~Gadvn~--------------------~d~~g~T---------------------pLh~A~~~g---~~eiVk~LL~   99 (513)
                         +|+|+..                    .|..|.+                     .||.-..++   +.++|++|++
T Consensus       288 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs  367 (672)
T PHA02730        288 VTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD  367 (672)
T ss_pred             cccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence               7888765                    5566655                     677777766   6999999999


Q ss_pred             cCCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhccccc
Q 010335          100 FRCNVTRADYLSGRTALHFAAVNGH----VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA  175 (513)
Q Consensus       100 ~ga~~~~~~~~~G~TpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  175 (513)
                      +|++++..  ..|.||||+|+..++    .+++++|+++|+..                               .++.+|
T Consensus       368 ~GAdIN~k--~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~-------------------------------dIN~kd  414 (672)
T PHA02730        368 NGATMDKT--TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM-------------------------------AINHVS  414 (672)
T ss_pred             CCCCCCcC--CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc-------------------------------cccccc
Confidence            99999975  489999999998875    89999999886521                               167788


Q ss_pred             CCCCcHHHH---HHHcC---------CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335          176 DGGITALHM---AALNG---------YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       176 ~~G~TpLh~---Aa~~g---------~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  243 (513)
                      ..|.||||.   |...+         ..+++++|+++|+++|.+|..          |.||||+|+..++.+++++|+++
T Consensus       415 ~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~----------G~TPLh~Aa~~~~~eive~LI~~  484 (672)
T PHA02730        415 NNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNE----------NKTLLYYAVDVNNIQFARRLLEY  484 (672)
T ss_pred             cCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCC----------CCCHHHHHHHhCCHHHHHHHHHC
Confidence            899999984   33332         235799999999999999987          99999999999999999999999


Q ss_pred             CCCCCCcCC-CCCcHHHHHHHc--CccchhhhcCCCCC
Q 010335          244 GASRMSLNC-NGWLPLDVARMW--GRHWLEPLLAPSSD  278 (513)
Q Consensus       244 Gad~~~~d~-~G~TpL~~A~~~--g~~~iv~lL~~~~~  278 (513)
                      ||+++.+|. .|+||||+|+..  ++.+++++|+..+.
T Consensus       485 GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga  522 (672)
T PHA02730        485 GASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP  522 (672)
T ss_pred             CCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence            999999997 599999999874  67889888876654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=1e-25  Score=254.55  Aligned_cols=176  Identities=24%  Similarity=0.282  Sum_probs=161.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      +.++||.||..|+.++++.|++.|+|+|..|..|.||||+|+.+|+.++|++|+++|++++..+. +|.||||+|+..|+
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~-~G~TpL~~A~~~g~  603 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA-NGNTALWNAISAKH  603 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCC-CCCCHHHHHHHhCC
Confidence            37899999999999999999999999999999999999999999999999999999999999886 99999999999999


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      .+++++|+..+...                                   ....|.++||.|+.+|+.+++++|+++|+|+
T Consensus       604 ~~iv~~L~~~~~~~-----------------------------------~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi  648 (823)
T PLN03192        604 HKIFRILYHFASIS-----------------------------------DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV  648 (823)
T ss_pred             HHHHHHHHhcCccc-----------------------------------CcccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence            99999998643211                                   1234668999999999999999999999999


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCC-CcHHHHHHHcCc
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG-WLPLDVARMWGR  266 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G-~TpL~~A~~~g~  266 (513)
                      |..|..          |.||||+|+..|+.+++++|+++||+++..|..| +||++++.....
T Consensus       649 n~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        649 DSEDHQ----------GATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             CCCCCC----------CCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHH
Confidence            999977          9999999999999999999999999999999998 999998866443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.2e-25  Score=233.90  Aligned_cols=241  Identities=15%  Similarity=0.077  Sum_probs=172.2

Q ss_pred             CcHHHHHHHH-cCCHHHHHHHHhcCCCCcc------------------------c----------cCCCCCCcHHHHHHH
Q 010335           10 SGERLVSAAR-DGDFVEAKMLLDCNPCLAK------------------------Y----------STFGGLNSPLHFAAA   54 (513)
Q Consensus        10 ~~~~L~~Aa~-~G~~e~vk~LL~~~~~~~~------------------------~----------~~~~~g~TpLh~Aa~   54 (513)
                      +.++|+.|+. .|+.|++++||++|++...                        +          -.+..|.||||+|+.
T Consensus       105 ~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~  184 (631)
T PHA02792        105 INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII  184 (631)
T ss_pred             CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh
Confidence            3457788866 6999999999999976310                        0          112247999999999


Q ss_pred             cC-------CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHhcCCCCC-------------------c
Q 010335           55 KG-------HNEIVALLLENGADVNSRNYCGQTALMQACRYG--HWEVVQTLLLFRCNVT-------------------R  106 (513)
Q Consensus        55 ~g-------~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g--~~eiVk~LL~~ga~~~-------------------~  106 (513)
                      .+       +.++++.|+++|++++.+|..|.||||+|+.+.  ..|++++|++.--...                   .
T Consensus       185 ~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~  264 (631)
T PHA02792        185 TRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHK  264 (631)
T ss_pred             hCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccC
Confidence            99       899999999999999999999999999999999  7889999875311000                   0


Q ss_pred             ccC------CCCCc------------------------------HHHHHHHcC--CHHHHHHHHHccCCCCccccch-hh
Q 010335          107 ADY------LSGRT------------------------------ALHFAAVNG--HVRCIRLVVADFVPSVPFEVMN-TQ  147 (513)
Q Consensus       107 ~~~------~~G~T------------------------------pLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~-~~  147 (513)
                      .+.      ..|.+                              .||.=..++  +.+++++|++.|.......... ..
T Consensus       265 id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~  344 (631)
T PHA02792        265 IDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYF  344 (631)
T ss_pred             ccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHH
Confidence            000      01111                              123333344  6788889998887653211111 11


Q ss_pred             hcccCCCCchhhhhhchhHHHHhcccccCCC--CcHHHHHHHcCCH---HHHHHHHHcCCCcccccccCCccccccCCCC
Q 010335          148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGG--ITALHMAALNGYF---DCVQLLLDLHANVSAVTFHYGTSMDLIGAGS  222 (513)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G--~TpLh~Aa~~g~~---eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~  222 (513)
                      .+...+....+....   .....++.+|..|  .||||+|+.....   +++++|+++|+|+|.++..          |.
T Consensus       345 ~Aa~~gn~eIVelLI---s~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~----------G~  411 (631)
T PHA02792        345 QKFDNRDPKVVEYIL---KNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKH----------GR  411 (631)
T ss_pred             HHHHcCCHHHHHHHH---HcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccccc----------Cc
Confidence            111111111111111   1122356667664  6999998877664   4689999999999999977          99


Q ss_pred             chhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Q 010335          223 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM  263 (513)
Q Consensus       223 TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~  263 (513)
                      ||||+|+..++.+++++|+++|++++.+|..|.|||++|+.
T Consensus       412 TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        412 SILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999976

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=3e-25  Score=249.05  Aligned_cols=233  Identities=22%  Similarity=0.146  Sum_probs=177.9

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhc--CCCCccccCCCCCCcHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDC--NPCLAKYSTFGGLNSPLH-FAAAKGHNEIVALLLENGADVNSRNYCGQTALMQ   84 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~--~~~~~~~~~~~~g~TpLh-~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~   84 (513)
                      +..+++|+.|++.||++.++.+++.  +.+++.  .+..|.|||| .|+.+++.+++++|+++|+    .+..|.||||.
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~--~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~   88 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINC--PDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHA   88 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCC--cCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHH
Confidence            3456789999999999999999998  555543  3344599999 8889999999999999987    67789999999


Q ss_pred             HHHcC---CHHHHHHHHhcCCC---------CCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccC
Q 010335           85 ACRYG---HWEVVQTLLLFRCN---------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDR  152 (513)
Q Consensus        85 A~~~g---~~eiVk~LL~~ga~---------~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~  152 (513)
                      |+..+   ..++++++...+.+         ........|.||||+|+.+|+.+++++|+++|++...........    
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~----  164 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFV----  164 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhh----
Confidence            99832   23344555544432         111122369999999999999999999999887644111100000    


Q ss_pred             CCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCC
Q 010335          153 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  232 (513)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g  232 (513)
                                     ..........|.||||.|+..|+.+++++|+++|+|++..|..          |+||||+|+..+
T Consensus       165 ---------------~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~----------g~T~Lh~A~~~~  219 (743)
T TIGR00870       165 ---------------KSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSL----------GNTLLHLLVMEN  219 (743)
T ss_pred             ---------------cCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhh----------hhHHHHHHHhhh
Confidence                           0000112246899999999999999999999999999999977          999999999987


Q ss_pred             ---------CHHHHHHHHHCCCCC-------CCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335          233 ---------NLKCCQVLLSRGASR-------MSLNCNGWLPLDVARMWGRHWLEPLLAP  275 (513)
Q Consensus       233 ---------~~eivk~LL~~Gad~-------~~~d~~G~TpL~~A~~~g~~~iv~lL~~  275 (513)
                               ...+.+++++.++..       +..|.+|.||||+|+..|+.+++++|++
T Consensus       220 ~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       220 EFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence                     234666776665553       6779999999999999999999998877

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=9.2e-26  Score=203.37  Aligned_cols=224  Identities=26%  Similarity=0.308  Sum_probs=192.4

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      +++.+-.|.+.|+-++++.++.-.++........ |+++++.|+-.|+.+.+..+|.+|+..|..+..+++|+++++...
T Consensus        62 ge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~-g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql  140 (296)
T KOG0502|consen   62 GESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPE-GWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQL  140 (296)
T ss_pred             CCcccchhhhcCCcHHHHHhhccCCCCCCCCCch-hhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHH
Confidence            4455677899999999999888777765544333 699999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      +++++..|.+..  +|..|. .|+|||.||+..|++.+|++|+..|++..                              
T Consensus       141 ~L~~~~~~~~n~--VN~~De-~GfTpLiWAaa~G~i~vV~fLL~~GAdp~------------------------------  187 (296)
T KOG0502|consen  141 HLDVVDLLVNNK--VNACDE-FGFTPLIWAAAKGHIPVVQFLLNSGADPD------------------------------  187 (296)
T ss_pred             HHHHHHHHhhcc--ccCccc-cCchHhHHHHhcCchHHHHHHHHcCCChh------------------------------
Confidence            999988876654  455554 89999999999999999999998877532                              


Q ss_pred             hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335          170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  249 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~  249 (513)
                         .-..+..++|++|...|..++|++||+.+.|+|..|.+          |-|||.||++.|+.++|+.||+.|||++.
T Consensus       188 ---~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwN----------GgTpLlyAvrgnhvkcve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  188 ---ALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWN----------GGTPLLYAVRGNHVKCVESLLNSGADVTQ  254 (296)
T ss_pred             ---hhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccC----------CCceeeeeecCChHHHHHHHHhcCCCccc
Confidence               22233459999999999999999999999999999988          99999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCccchhhhcCCCCCCC
Q 010335          250 LNCNGWLPLDVARMWGRHWLEPLLAPSSDAV  280 (513)
Q Consensus       250 ~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~  280 (513)
                      .+..|++++.+|+..|+..+-+.|.++....
T Consensus       255 e~dsGy~~mdlAValGyr~Vqqvie~h~lkl  285 (296)
T KOG0502|consen  255 EDDSGYWIMDLAVALGYRIVQQVIEKHALKL  285 (296)
T ss_pred             ccccCCcHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            9999999999999999985555555444433

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-24  Score=219.65  Aligned_cols=234  Identities=26%  Similarity=0.340  Sum_probs=187.6

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      .+-.++.|++.|+.+.+..||..|.+++.++.++  .|+||-++...+.+||++|+++|++||..|..|+||||.|+..|
T Consensus        40 ~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~Dg--lTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   40 DSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDG--LTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             chHHHHhccccccHHHHHHHhccCCCccccCCcc--chhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccc
Confidence            4456889999999999999999998887766666  99999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      |..++++|+.+|+++...+. +|..|+..+...-..+++..-...-...       ........................
T Consensus       118 ~~~i~~~li~~gA~~~avNs-dg~~P~dl~e~ea~~~~l~~~~~r~gi~-------iea~R~~~e~~ml~D~~q~l~~G~  189 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANLLAVNS-DGNMPYDLAEDEATLDVLETEMARQGID-------IEAARKAEEQTMLDDARQWLNAGA  189 (527)
T ss_pred             cHHHHHHHHHhhhhhhhccC-CCCCccccccCcchhHHHHHHHHHhccc-------HHHHhhhhHHHHHHHHHHHHhccc
Confidence            99999999999999887775 7888888876655555554443221110       000000000000111111111222


Q ss_pred             hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335          170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  249 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~  249 (513)
                      ..+..+..|-|.||.|+.+|..++.++|+++|.+++.+|.+          |+||||.|+..|..+++++|+++|++.+.
T Consensus       190 ~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d----------gWtPlHAAA~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  190 ELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYD----------GWTPLHAAAHWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             cccccccccchHHHHHHhhhHHHHHHHHHHhccCccccccc----------CCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence            34555666999999999999999999999999999999987          99999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHH
Q 010335          250 LNCNGWLPLDVARM  263 (513)
Q Consensus       250 ~d~~G~TpL~~A~~  263 (513)
                      .+..|.||+.+|..
T Consensus       260 ~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  260 KTKMGETPLDVADE  273 (527)
T ss_pred             hhhcCCCCccchhh
Confidence            99999999999876

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=3.4e-24  Score=223.03  Aligned_cols=245  Identities=24%  Similarity=0.255  Sum_probs=197.4

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcC-----CC------CccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCN-----PC------LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ   79 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~-----~~------~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~   79 (513)
                      .+-|..|++.||++.+..||+..     +-      ......+..|.|+||.|+.+|+.+++++|++..+-++..|..|.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~   83 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGI   83 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCc
Confidence            34599999999999999999752     11      11112222458999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhh
Q 010335           80 TALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK  159 (513)
Q Consensus        80 TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (513)
                      +|||+|++.|+.++||+|+.++..++.... .|.||||.|+.+||.+++.+|+.++.+                      
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~-e~~tplhlaaqhgh~dvv~~Ll~~~ad----------------------  140 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNI-ENETPLHLAAQHGHLEVVFYLLKKNAD----------------------  140 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccc-cCcCccchhhhhcchHHHHHHHhcCCC----------------------
Confidence            999999999999999999999987777774 999999999999999999999988765                      


Q ss_pred             hhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHH
Q 010335          160 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  239 (513)
Q Consensus       160 ~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~  239 (513)
                                 .-.++..+.|+|-+|++.|..++|+.|+....++...+.. + ....--.+.+|||+|+++|+.++++.
T Consensus       141 -----------p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~-~-~~~~~~~~~~plHlaakngh~~~~~~  207 (854)
T KOG0507|consen  141 -----------PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRV-G-DIKRPFPAIYPLHLAAKNGHVECMQA  207 (854)
T ss_pred             -----------ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccC-C-CCCCCCCCcCCcchhhhcchHHHHHH
Confidence                       3346677889999999999999999999874433321111 1 00011237899999999999999999


Q ss_pred             HHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC-CCCCCCCCCCCCccccchhH
Q 010335          240 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLS  296 (513)
Q Consensus       240 LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~-~~~~~~~~~~~~~~~~~l~~  296 (513)
                      |++.|.|+|.....| |+||.|+..|..++|.+|++. ....+.    +.++++++..
T Consensus       208 ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~----n~~~qtaldi  260 (854)
T KOG0507|consen  208 LLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIK----NQHGQTALDI  260 (854)
T ss_pred             HHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccc----cccchHHHHH
Confidence            999999999988776 799999999999999877764 333433    5556665443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=2.1e-24  Score=224.57  Aligned_cols=217  Identities=29%  Similarity=0.292  Sum_probs=190.3

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .+-++||.|+.+|+.++++.|++..+-+......  |.+|||+|++.|+.++|++|+.++..+|..+..|.||||.|+++
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~k--g~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh  125 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTK--GILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH  125 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhhhcc--CcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh
Confidence            3568899999999999999999998877665533  48999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      ||.++|.+|+++|+++-..++ ++.|+|.+|++.|..++++.|+....+...   .                    ....
T Consensus       126 gh~dvv~~Ll~~~adp~i~nn-s~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~---~--------------------~~~~  181 (854)
T KOG0507|consen  126 GHLEVVFYLLKKNADPFIRNN-SKETVLDLASRFGRAEVVQMLLQKKFPVQS---S--------------------LRVG  181 (854)
T ss_pred             cchHHHHHHHhcCCCccccCc-ccccHHHHHHHhhhhHHHHHHhhhccchhh---c--------------------ccCC
Confidence            999999999999999999886 899999999999999999999975211100   0                    0000


Q ss_pred             HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335          169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  248 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~  248 (513)
                        ...++..+.+|||+|+.+||.++++.|++.|.|+|.....           -|+||.|+..|..++|.+|++-|.+..
T Consensus       182 --~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~-----------gtalheaalcgk~evvr~ll~~gin~h  248 (854)
T KOG0507|consen  182 --DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTED-----------GTALHEAALCGKAEVVRFLLEIGINTH  248 (854)
T ss_pred             --CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccccc-----------chhhhhHhhcCcchhhhHHHhhccccc
Confidence              2345557889999999999999999999999999998854           589999999999999999999999999


Q ss_pred             CcCCCCCcHHHHHHHc
Q 010335          249 SLNCNGWLPLDVARMW  264 (513)
Q Consensus       249 ~~d~~G~TpL~~A~~~  264 (513)
                      ++|.+|.|+|++-...
T Consensus       249 ~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  249 IKNQHGQTALDIIIDL  264 (854)
T ss_pred             cccccchHHHHHHHhc
Confidence            9999999999987654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.8e-23  Score=236.32  Aligned_cols=175  Identities=23%  Similarity=0.271  Sum_probs=157.7

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      .....+|+.||..||.++++.|++.|.+++..+..  |.||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+.
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~--G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSK--GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            34567899999999999999999999998765544  4999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL  167 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                      .|+.+++++|++.++..+.   ..|.++||+|+..|+.+++++|++++.+                              
T Consensus       601 ~g~~~iv~~L~~~~~~~~~---~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad------------------------------  647 (823)
T PLN03192        601 AKHHKIFRILYHFASISDP---HAAGDLLCTAAKRNDLTAMKELLKQGLN------------------------------  647 (823)
T ss_pred             hCCHHHHHHHHhcCcccCc---ccCchHHHHHHHhCCHHHHHHHHHCCCC------------------------------
Confidence            9999999999988776543   3578999999999999999999987764                              


Q ss_pred             HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCC-CchhHHHhh
Q 010335          168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG-STPLHFAAC  230 (513)
Q Consensus       168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G-~TpLh~Aa~  230 (513)
                         ++.+|.+|.||||+|+..|+.+++++|+++|++++..+..          | .||++++..
T Consensus       648 ---in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~----------g~~t~~~l~~~  698 (823)
T PLN03192        648 ---VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD----------DDFSPTELREL  698 (823)
T ss_pred             ---CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCC----------CCCCHHHHHHH
Confidence               7888999999999999999999999999999999999876          5 889877643

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.1e-24  Score=196.39  Aligned_cols=201  Identities=26%  Similarity=0.244  Sum_probs=182.9

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      +.++++.|+-.|+.+++..+|.++.+.+..+..+  .+|+.+++..-+++++..|.++.  +|..|..|+|||+||+.+|
T Consensus        96 g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p--~s~~slsVhql~L~~~~~~~~n~--VN~~De~GfTpLiWAaa~G  171 (296)
T KOG0502|consen   96 GWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMP--WSPLSLSVHQLHLDVVDLLVNNK--VNACDEFGFTPLIWAAAKG  171 (296)
T ss_pred             hhhhhhhcCCCCCcceeeeeecccccCCcccccc--CChhhHHHHHHHHHHHHHHhhcc--ccCccccCchHhHHHHhcC
Confidence            5678999999999999999999998887766666  89999999999999998888764  5899999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      ++++|++||+.|+++..... ...++|.+|.+.|..++|++|+....+                                
T Consensus       172 ~i~vV~fLL~~GAdp~~lgk-~resALsLAt~ggytdiV~lLL~r~vd--------------------------------  218 (296)
T KOG0502|consen  172 HIPVVQFLLNSGADPDALGK-YRESALSLATRGGYTDIVELLLTREVD--------------------------------  218 (296)
T ss_pred             chHHHHHHHHcCCChhhhhh-hhhhhHhHHhcCChHHHHHHHHhcCCC--------------------------------
Confidence            99999999999999998774 778999999999999999999987654                                


Q ss_pred             hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335          170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  249 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~  249 (513)
                       +|..|-+|-|||.+|++.||+++|+.|++.|||++..+..          |.+++.+|+..|+. +|+..|++-++.+.
T Consensus       219 -VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~ds----------Gy~~mdlAValGyr-~Vqqvie~h~lkl~  286 (296)
T KOG0502|consen  219 -VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDS----------GYWIMDLAVALGYR-IVQQVIEKHALKLC  286 (296)
T ss_pred             -cceeccCCCceeeeeecCChHHHHHHHHhcCCCccccccc----------CCcHHHHHHHhhhH-HHHHHHHHHHHHHh
Confidence             8889999999999999999999999999999999999866          99999999999998 99999998888888


Q ss_pred             cCCCCCcHHH
Q 010335          250 LNCNGWLPLD  259 (513)
Q Consensus       250 ~d~~G~TpL~  259 (513)
                      +|+.-.+|+|
T Consensus       287 Q~~~~~~~~~  296 (296)
T KOG0502|consen  287 QDSEKRTPLH  296 (296)
T ss_pred             hcccCCCCCC
Confidence            8877777764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=1.5e-22  Score=227.15  Aligned_cols=197  Identities=24%  Similarity=0.282  Sum_probs=150.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCChHHH-HHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335           44 GLNSPLHFAAAKGHNEIVALLLEN--GADVNSRNYCGQTALM-QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA  120 (513)
Q Consensus        44 ~g~TpLh~Aa~~g~~eivk~LL~~--Gadvn~~d~~g~TpLh-~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~  120 (513)
                      .++..|+.|+..|+.+.|+.+++.  +.++|..|..|.|||| .|+.+++.+++++|+++|+    .+ ..|.||||.|+
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~-~~G~T~Lh~A~   90 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RG-AVGDTLLHAIS   90 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CC-CcChHHHHHHH
Confidence            347999999999999999999999  8999999999999999 8999999999999999987    23 37999999998


Q ss_pred             HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335          121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL  200 (513)
Q Consensus       121 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~  200 (513)
                      .. ..+.++.++............             .      .............|.||||+|+.+|+.++|++|+++
T Consensus        91 ~~-~~~~v~~ll~~l~~~~~~~~~-------------~------~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~  150 (743)
T TIGR00870        91 LE-YVDAVEAILLHLLAAFRKSGP-------------L------ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER  150 (743)
T ss_pred             hc-cHHHHHHHHHHHhhcccccCc-------------h------hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC
Confidence            73 333343333221110000000             0      000000112235699999999999999999999999


Q ss_pred             CCCcccccccC----CccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335          201 HANVSAVTFHY----GTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  265 (513)
Q Consensus       201 Gadvn~~~~~~----~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g  265 (513)
                      |++++......    ....+....|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus       151 GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       151 GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence            99999654321    011122235899999999999999999999999999999999999999999987

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.7e-22  Score=194.71  Aligned_cols=159  Identities=31%  Similarity=0.411  Sum_probs=140.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcC-----CHHHHHHHHhcCCCCCcccCCCCCc
Q 010335           41 TFGGLNSPLHFAAAKGHNEIVALLLENG-ADVNSRNYCGQTALMQACRYG-----HWEVVQTLLLFRCNVTRADYLSGRT  114 (513)
Q Consensus        41 ~~~~g~TpLh~Aa~~g~~eivk~LL~~G-advn~~d~~g~TpLh~A~~~g-----~~eiVk~LL~~ga~~~~~~~~~G~T  114 (513)
                      .+++|+|+||||+..+++++|+.||+.| .++|.+|.-|.||+|+|+...     +.++|..|.+.| |+|.+....|+|
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT  342 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT  342 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence            3556699999999999999999999998 689999999999999998743     678898888876 677777678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHH
Q 010335          115 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV  194 (513)
Q Consensus       115 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv  194 (513)
                      +|++|+.+|..++|+.||+-+++                                 +|.+|++|-|+||.|+.+||.+||
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAd---------------------------------VNiQDdDGSTALMCA~EHGhkEiv  389 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGAD---------------------------------VNIQDDDGSTALMCAAEHGHKEIV  389 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCC---------------------------------CccccCCccHHHhhhhhhChHHHH
Confidence            99999999999999999987765                                 899999999999999999999999


Q ss_pred             HHHHHc-CCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335          195 QLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       195 ~~Ll~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  243 (513)
                      ++||.. +.|+...|.+          |.|+|.+|...|+-+|.-+|..+
T Consensus       390 klLLA~p~cd~sLtD~D----------gSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  390 KLLLAVPSCDISLTDVD----------GSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHhccCcccceeecCC----------CchhhhhHHhcCchHHHHHHHHH
Confidence            999964 6677777766          99999999999999999888764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-22  Score=195.67  Aligned_cols=162  Identities=28%  Similarity=0.272  Sum_probs=141.7

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC-CCCcccCCCCCcHHHHHHHc-----CCHHHHHHHHHccCCCCccccc
Q 010335           71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRC-NVTRADYLSGRTALHFAAVN-----GHVRCIRLVVADFVPSVPFEVM  144 (513)
Q Consensus        71 vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga-~~~~~~~~~G~TpLh~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~  144 (513)
                      ||..|.+|+|+||||+.++++++|+.||+.|. +++..+ .-|+||+++|+..     .+.++|..|+.-+.        
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qN-rAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--------  331 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQN-RAGYTPVMLAALAKLKQPADRTVVERLFKMGD--------  331 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccc-cccccHHHHHHHHhhcchhhHHHHHHHHhccC--------
Confidence            68899999999999999999999999999875 566555 4999999999864     36777777775432        


Q ss_pred             hhhhcccCCCCchhhhhhchhHHHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCc
Q 010335          145 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST  223 (513)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~T  223 (513)
                                                +|.+. ..|+|+||+|+.+|+.++|+.||.-|||+|..|.+          |.|
T Consensus       332 --------------------------VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdD----------GST  375 (452)
T KOG0514|consen  332 --------------------------VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDD----------GST  375 (452)
T ss_pred             --------------------------cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCC----------ccH
Confidence                                      44433 46999999999999999999999999999999977          999


Q ss_pred             hhHHHhhCCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335          224 PLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  277 (513)
Q Consensus       224 pLh~Aa~~g~~eivk~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~  277 (513)
                      +|+.|+++||.|+|++||.. +.|....|.+|-|+|.+|...||.+|.-+|..+-
T Consensus       376 ALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  376 ALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             HHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            99999999999999999986 8899999999999999999999999988876543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.7e-21  Score=178.04  Aligned_cols=144  Identities=23%  Similarity=0.246  Sum_probs=85.0

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCH----HHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHH---HHHHHHccCCCCc
Q 010335           68 GADVNSRNYCGQTALMQACRYGHW----EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC---IRLVVADFVPSVP  140 (513)
Q Consensus        68 Gadvn~~d~~g~TpLh~A~~~g~~----eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~i---v~~Ll~~~~~~~~  140 (513)
                      |+|++..+.++.++||.|++.|+.    +++++|++.|+.++..+. .|+||||+|+..|+.+.   +++|+..+..   
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad---   85 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH-HGRQCTHMVAWYDRANAVMKIELLVNMGAD---   85 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC-CCCcHHHHHHHhCccCHHHHHHHHHHcCCC---
Confidence            444444555555555555555554    344445555555554443 55555555555554332   4555544332   


Q ss_pred             cccchhhhcccCCCCchhhhhhchhHHHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCcccccc
Q 010335          141 FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLI  218 (513)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~~~~~~~~  218 (513)
                                                    ++.++ ..|.||||+|+..|+.+++++|++ .|++++..+..        
T Consensus        86 ------------------------------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~--------  127 (166)
T PHA02743         86 ------------------------------INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQ--------  127 (166)
T ss_pred             ------------------------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCC--------
Confidence                                          34444 356666666666667777777764 57777766654        


Q ss_pred             CCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCC
Q 010335          219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW  255 (513)
Q Consensus       219 ~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~  255 (513)
                        |.||||+|+..++.+++++|+++|++++.++..|.
T Consensus       128 --g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        128 --HETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             --CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence              77777777777777777777777777777666653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.7e-20  Score=171.57  Aligned_cols=133  Identities=14%  Similarity=0.099  Sum_probs=117.6

Q ss_pred             CCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH---HHHHHhcCCCCCcccCCCCCcHHH
Q 010335           45 LNSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQTALMQACRYGHWEV---VQTLLLFRCNVTRADYLSGRTALH  117 (513)
Q Consensus        45 g~TpLh~Aa~~g~~----eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ei---Vk~LL~~ga~~~~~~~~~G~TpLh  117 (513)
                      +.++||+|+..|++    +++++|++.|++++.+|..|+||||+|+.+|+.++   +++|+.+|++++..+...|.||||
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh   99 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLH   99 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHH
Confidence            37899999999998    67778889999999999999999999999988654   899999999999887447999999


Q ss_pred             HHHHcCCHHHHHHHHH-ccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHH
Q 010335          118 FAAVNGHVRCIRLVVA-DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL  196 (513)
Q Consensus       118 ~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~  196 (513)
                      +|+..|+.+++++|+. .+..                                 ++..+..|.||||+|+..++.+++++
T Consensus       100 ~A~~~g~~~iv~~Ll~~~gad---------------------------------~~~~d~~g~tpL~~A~~~~~~~iv~~  146 (166)
T PHA02743        100 IAASTKNYELAEWLCRQLGVN---------------------------------LGAINYQHETAYHIAYKMRDRRMMEI  146 (166)
T ss_pred             HHHHhCCHHHHHHHHhccCCC---------------------------------ccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999985 4432                                 56778889999999999999999999


Q ss_pred             HHHcCCCccccccc
Q 010335          197 LLDLHANVSAVTFH  210 (513)
Q Consensus       197 Ll~~Gadvn~~~~~  210 (513)
                      |+++|++++..+..
T Consensus       147 Ll~~ga~~~~~~~~  160 (166)
T PHA02743        147 LRANGAVCDDPLSI  160 (166)
T ss_pred             HHHcCCCCCCcccC
Confidence            99999999988855

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=2.2e-20  Score=184.43  Aligned_cols=149  Identities=15%  Similarity=0.172  Sum_probs=127.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCC----CCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGADVNSRN----YCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV  121 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d----~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~  121 (513)
                      .++||.|+..|+.+++++|+++|+|+|.++    ..|.||||+|+..|+.+++++|+++|++++..++..|.||||+|+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            677888888899999999999999999874    5899999999999999999999999999998654479999999999


Q ss_pred             cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335          122 NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH  201 (513)
Q Consensus       122 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G  201 (513)
                      .|+.+++++|++.+++                                 ++.+|..|.||||+|+..++.+++..+.  |
T Consensus       114 ~~~~eivklLL~~GAd---------------------------------in~kd~~G~TpL~~A~~~~~~~~~~~~~--~  158 (300)
T PHA02884        114 HGCLKCLEILLSYGAD---------------------------------INIQTNDMVTPIELALMICNNFLAFMIC--D  158 (300)
T ss_pred             cCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHhCChhHHHHhc--C
Confidence            9999999999988765                                 6778889999999999999988876665  3


Q ss_pred             CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCC
Q 010335          202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA  245 (513)
Q Consensus       202 advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga  245 (513)
                      ...   +..          +.+|++++   ++.+++++|+++++
T Consensus       159 ~~~---~~~----------~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        159 NEI---SNF----------YKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             Ccc---ccc----------ccChhhhh---ccHHHHHHHHHHHH
Confidence            322   222          66788875   47899999999877

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=8.5e-21  Score=191.91  Aligned_cols=208  Identities=30%  Similarity=0.355  Sum_probs=157.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHH
Q 010335           48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC  127 (513)
Q Consensus        48 pLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~i  127 (513)
                      .+.-|+..|..+-|+.||..|+++|..|.+|.|+||.++...+.+||++|+++|++++..++ .|+||||.|+..|+..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~-e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN-EGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc-ccCCcchhhcccccHHH
Confidence            45667789999999999999999999999999999999999999999999999999999996 99999999999999999


Q ss_pred             HHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh-HHHHhcccccCCCCcHHHHHHHcCC----HHHHHHHHHcCC
Q 010335          128 IRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS-ALSKFVNKAADGGITALHMAALNGY----FDCVQLLLDLHA  202 (513)
Q Consensus       128 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~d~~G~TpLh~Aa~~g~----~eiv~~Ll~~Ga  202 (513)
                      +++|+..++......          .....+....... .........+..|.+  .-|++.--    ++-++..+..|.
T Consensus       122 ~~~li~~gA~~~avN----------sdg~~P~dl~e~ea~~~~l~~~~~r~gi~--iea~R~~~e~~ml~D~~q~l~~G~  189 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVN----------SDGNMPYDLAEDEATLDVLETEMARQGID--IEAARKAEEQTMLDDARQWLNAGA  189 (527)
T ss_pred             HHHHHHhhhhhhhcc----------CCCCCccccccCcchhHHHHHHHHHhccc--HHHHhhhhHHHHHHHHHHHHhccc
Confidence            999998876432111          0111110000000 000011112222333  11222111    112233344788


Q ss_pred             CcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       203 dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      +.+..+..          |.|.||+|+.+|..++.++||+.|.+++.+|.+||||||.|+.||..++.++|..++.
T Consensus       190 ~~d~~~~r----------G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga  255 (527)
T KOG0505|consen  190 ELDARHAR----------GATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA  255 (527)
T ss_pred             cccccccc----------cchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc
Confidence            88888766          9999999999999999999999999999999999999999999999999888876543

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=6.9e-20  Score=168.06  Aligned_cols=24  Identities=21%  Similarity=0.515  Sum_probs=10.4

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHH
Q 010335           74 RNYCGQTALMQACRYGHWEVVQTL   97 (513)
Q Consensus        74 ~d~~g~TpLh~A~~~g~~eiVk~L   97 (513)
                      +|..|.||||+|+..|+.++|++|
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l   40 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARF   40 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHH
Confidence            333444444444444444444443

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=8.1e-20  Score=167.62  Aligned_cols=129  Identities=20%  Similarity=0.237  Sum_probs=113.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCChHHHHHHHcCC----HHHHHHHHhcCCCCCcccCCCCC
Q 010335           44 GLNSPLHFAAAKGHNEIVALLLE------NGADVNSRNYCGQTALMQACRYGH----WEVVQTLLLFRCNVTRADYLSGR  113 (513)
Q Consensus        44 ~g~TpLh~Aa~~g~~eivk~LL~------~Gadvn~~d~~g~TpLh~A~~~g~----~eiVk~LL~~ga~~~~~~~~~G~  113 (513)
                      .|.||||+|+..|+.++|++|+.      .|++++.+|..|.||||+|+..|+    .+++++|+++|++++..+...|.
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~   99 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGD   99 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCC
Confidence            34899999999999999999864      368899999999999999999998    58999999999999987644899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHc-cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHH
Q 010335          114 TALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  192 (513)
Q Consensus       114 TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~e  192 (513)
                      ||||+|+..++.+++++|+.. +..                                 ++..|..|+||||+|+..++.+
T Consensus       100 TpLh~A~~~~~~~iv~~Ll~~~g~~---------------------------------~~~~n~~g~tpL~~A~~~~~~~  146 (169)
T PHA02741        100 TALHLAAHRRDHDLAEWLCCQPGID---------------------------------LHFCNADNKSPFELAIDNEDVA  146 (169)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCC---------------------------------CCcCCCCCCCHHHHHHHCCCHH
Confidence            999999999999999999963 332                                 5677888999999999999999


Q ss_pred             HHHHHHHcCCCcc
Q 010335          193 CVQLLLDLHANVS  205 (513)
Q Consensus       193 iv~~Ll~~Gadvn  205 (513)
                      ++++|++.++...
T Consensus       147 iv~~L~~~~~~~~  159 (169)
T PHA02741        147 MMQILREIVATSR  159 (169)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999876544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.7e-19  Score=178.26  Aligned_cols=151  Identities=15%  Similarity=0.111  Sum_probs=129.2

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccC--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCChHHHHHH
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYST--FGGLNSPLHFAAAKGHNEIVALLLENGADVNSR-NYCGQTALMQAC   86 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~--~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~-d~~g~TpLh~A~   86 (513)
                      ...+|+.|++.|+.+++++|+++|++++....  ...|.||||+|+..|+.+++++|+++|+|+|.+ +..|.||||+|+
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV  112 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence            45789999999999999999999999876532  234599999999999999999999999999986 568999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335           87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  166 (513)
Q Consensus        87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      ..|+.+++++|+.+|++++..+. .|.||||+|+..++.+++.++...                                
T Consensus       113 ~~~~~eivklLL~~GAdin~kd~-~G~TpL~~A~~~~~~~~~~~~~~~--------------------------------  159 (300)
T PHA02884        113 LHGCLKCLEILLSYGADINIQTN-DMVTPIELALMICNNFLAFMICDN--------------------------------  159 (300)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHhCChhHHHHhcCC--------------------------------
Confidence            99999999999999999999886 899999999999988877555421                                


Q ss_pred             HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 010335          167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA  202 (513)
Q Consensus       167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga  202 (513)
                            ..+..+.+|++++   ++.+++++|+.++.
T Consensus       160 ------~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        160 ------EISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             ------cccccccChhhhh---ccHHHHHHHHHHHH
Confidence                  1244566777765   46899999999887

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.82  E-value=1.1e-20  Score=201.75  Aligned_cols=229  Identities=25%  Similarity=0.251  Sum_probs=187.0

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCChHHHHHHHc
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR-NYCGQTALMQACRY   88 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~-d~~g~TpLh~A~~~   88 (513)
                      -.++|-.|++.|+.|++.+|+.+|.++...+..+  -+||.+|+..||..+|+.|+++.++++.+ |..+.|+|-+||..
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkg--f~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKG--FVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhccccccccccc--chhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            3467999999999999999999999998766655  89999999999999999999999999874 77899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      |+.++|++||..|++-..++ ...+|||.+|...|.+++|++|+..|....                             
T Consensus       835 gr~~vvelLl~~gankehrn-vsDytPlsla~Sggy~~iI~~llS~GseIn-----------------------------  884 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHRN-VSDYTPLSLARSGGYTKIIHALLSSGSEIN-----------------------------  884 (2131)
T ss_pred             CcchHHHHHHHhhccccccc-hhhcCchhhhcCcchHHHHHHHhhcccccc-----------------------------
Confidence            99999999999999977666 478999999999999999999998774311                             


Q ss_pred             HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335          169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  248 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~  248 (513)
                        -....+.|..||++|+.+||-+.++.||+.|.|+|..-.-         +.+|+|-+|+-.|..++|.+||++.+++.
T Consensus       885 --SrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeT---------NrnTaltla~fqgr~evv~lLLa~~anve  953 (2131)
T KOG4369|consen  885 --SRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIET---------NRNTALTLALFQGRPEVVFLLLAAQANVE  953 (2131)
T ss_pred             --cccccccCcchhhhhhhccccHHHHHHhcccchhcccccc---------ccccceeeccccCcchHHHHHHHHhhhhh
Confidence              1122345778888888888888888888888888765432         36778888888888888888888888888


Q ss_pred             CcCCCCCcHHHHHHHcCccchhhhcCC-CCCCCC
Q 010335          249 SLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVM  281 (513)
Q Consensus       249 ~~d~~G~TpL~~A~~~g~~~iv~lL~~-~~~~~~  281 (513)
                      .+-..|.|||+-++..|..++-.+|+. +++.+.
T Consensus       954 hRaktgltplme~AsgGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  954 HRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             hhcccCCcccchhhcCCccccchhhhhccccccc
Confidence            888888888888888888777665554 444443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.81  E-value=2.9e-20  Score=198.61  Aligned_cols=255  Identities=24%  Similarity=0.197  Sum_probs=191.0

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .+-.+|+.|+--||+.+|+.||++.+++....+.. +.|+|-+|+..|..++|++||..|++-..++-...|||-+|...
T Consensus       789 kgf~plImaatagh~tvV~~llk~ha~veaQsdrt-kdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sg  867 (2131)
T KOG4369|consen  789 KGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRT-KDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSG  867 (2131)
T ss_pred             ccchhhhhhcccCchHHHHHHHhhhhhhhhhcccc-cCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCc
Confidence            45578999999999999999999999997765544 48999999999999999999999999888998999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccc----hhhhcccCCCCchhhhhhc
Q 010335           89 GHWEVVQTLLLFRCNVTRADY-LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM----NTQIEGDRGDGSSVKSKCD  163 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~-~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  163 (513)
                      |..++|+.|+.+|++++.+.. +.|-.||++|..+||...++.|++.+.+.+.....    .+.+....+..+....   
T Consensus       868 gy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~l---  944 (2131)
T KOG4369|consen  868 GYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFL---  944 (2131)
T ss_pred             chHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHH---
Confidence            999999999999998886543 46899999999999999999999877654432221    1122222222222222   


Q ss_pred             hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335          164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  243 (513)
                      .......+..+...|.|||+-+|..|.+++-++||..|+|+|..-..        ....|+|-+++..||...|..|+..
T Consensus       945 LLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp--------~T~dtalti~a~kGh~kfv~~lln~ 1016 (2131)
T KOG4369|consen  945 LLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVP--------NTWDTALTIPANKGHTKFVPKLLNG 1016 (2131)
T ss_pred             HHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCC--------CcCCccceeecCCCchhhhHHhhCC
Confidence            22233446677888999999999999999999999999999876533        1244556666666666666666655


Q ss_pred             CCCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335          244 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  275 (513)
Q Consensus       244 Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~  275 (513)
                      .|.+..+|++|.|+|.+|+..|+...+++|..
T Consensus      1017 ~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~ 1048 (2131)
T KOG4369|consen 1017 DATVRVPNKKGCTVLWLASAGGALSSCPILVS 1048 (2131)
T ss_pred             ccceecccCCCCcccchhccCCccccchHHhh
Confidence            55555556666666666665555555554443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.4e-19  Score=163.38  Aligned_cols=132  Identities=18%  Similarity=0.224  Sum_probs=105.6

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCC-------CcccCCCCCcHHHHHHHcCCHH---HHHHHHHccCCCCc
Q 010335           71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV-------TRADYLSGRTALHFAAVNGHVR---CIRLVVADFVPSVP  140 (513)
Q Consensus        71 vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~-------~~~~~~~G~TpLh~A~~~g~~~---iv~~Ll~~~~~~~~  140 (513)
                      ++.+|..|.||||+|+..|+.  +++|+..+...       ...+ ..|.||||+|+..|+.+   ++++|++.+..   
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d-~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad---   83 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYN-RHGKQCVHIVSNPDKADPQEKLKLLMEWGAD---   83 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhc-CCCCEEEEeecccCchhHHHHHHHHHHcCCC---
Confidence            356677889999999998873  33333332211       1223 47999999999998864   57888877653   


Q ss_pred             cccchhhhcccCCCCchhhhhhchhHHHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCcccccc
Q 010335          141 FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLI  218 (513)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~~~~~~~~  218 (513)
                                                    ++.++ ..|+||||+|+..|+.+++++|++ .|++++..+..        
T Consensus        84 ------------------------------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~--------  125 (154)
T PHA02736         84 ------------------------------INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYA--------  125 (154)
T ss_pred             ------------------------------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCC--------
Confidence                                          66676 489999999999999999999998 59999998876        


Q ss_pred             CCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335          219 GAGSTPLHFAACGGNLKCCQVLLSRGASRM  248 (513)
Q Consensus       219 ~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~  248 (513)
                        |.||||+|+..|+.+++++|+++|++.+
T Consensus       126 --g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        126 --FKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             --CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence              9999999999999999999999999865

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=3.3e-19  Score=160.98  Aligned_cols=128  Identities=17%  Similarity=0.118  Sum_probs=103.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCC--C-----CCCCCCCCChHHHHHHHcCCH---HHHHHHHhcCCCCCcccCCCC
Q 010335           43 GGLNSPLHFAAAKGHNEIVALLLENGA--D-----VNSRNYCGQTALMQACRYGHW---EVVQTLLLFRCNVTRADYLSG  112 (513)
Q Consensus        43 ~~g~TpLh~Aa~~g~~eivk~LL~~Ga--d-----vn~~d~~g~TpLh~A~~~g~~---eiVk~LL~~ga~~~~~~~~~G  112 (513)
                      ..|.||||+|+..|+.  +++|+..+.  +     ++.+|..|.||||+|+..|+.   +++++|+++|++++..++..|
T Consensus        15 ~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g   92 (154)
T PHA02736         15 IEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFG   92 (154)
T ss_pred             CCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCC
Confidence            3458999999999984  344333222  2     335688899999999999986   468899999999998875589


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCH
Q 010335          113 RTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  191 (513)
Q Consensus       113 ~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~  191 (513)
                      .||||+|+..|+.+++++|+.. +..                                 ++..+..|.||||+|+..|+.
T Consensus        93 ~T~Lh~A~~~~~~~i~~~Ll~~~g~d---------------------------------~n~~~~~g~tpL~~A~~~~~~  139 (154)
T PHA02736         93 NTPLHIAVYTQNYELATWLCNQPGVN---------------------------------MEILNYAFKTPYYVACERHDA  139 (154)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCC---------------------------------CccccCCCCCHHHHHHHcCCH
Confidence            9999999999999999999863 332                                 567788899999999999999


Q ss_pred             HHHHHHHHcCCCcc
Q 010335          192 DCVQLLLDLHANVS  205 (513)
Q Consensus       192 eiv~~Ll~~Gadvn  205 (513)
                      +++++|+++|++.+
T Consensus       140 ~i~~~Ll~~ga~~~  153 (154)
T PHA02736        140 KMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999998865

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=7.2e-18  Score=147.27  Aligned_cols=81  Identities=32%  Similarity=0.256  Sum_probs=39.8

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHH-HHHHHH-HCCCCCCCcC
Q 010335          174 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK-CCQVLL-SRGASRMSLN  251 (513)
Q Consensus       174 ~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~e-ivk~LL-~~Gad~~~~d  251 (513)
                      +...||||||.|+.-++.+++-+||++|+|+|+....          ..||||+|+...+.. .+.+|+ +++.++..++
T Consensus       126 ~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g----------~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~n  195 (228)
T KOG0512|consen  126 KTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKG----------LLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKN  195 (228)
T ss_pred             ccccCccchhhhhcccchhHHHHHHhccCcccccccc----------cchhhHHhhcccchHHHHHHHhhccccChhhhc
Confidence            3344555555555555555555555555555555533          455555555544332 233322 3344555555


Q ss_pred             CCCCcHHHHHHHc
Q 010335          252 CNGWLPLDVARMW  264 (513)
Q Consensus       252 ~~G~TpL~~A~~~  264 (513)
                      ..+.||+++|.+.
T Consensus       196 n~eeta~~iARRT  208 (228)
T KOG0512|consen  196 NLEETAFDIARRT  208 (228)
T ss_pred             CccchHHHHHHHh
Confidence            5555555555544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=1.1e-17  Score=136.28  Aligned_cols=88  Identities=42%  Similarity=0.545  Sum_probs=80.8

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH
Q 010335           14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEV   93 (513)
Q Consensus        14 L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ei   93 (513)
                      ||.|++.|+++++++|++.+.++..      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            7999999999999999999877765      4899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcc
Q 010335           94 VQTLLLFRCNVTRA  107 (513)
Q Consensus        94 Vk~LL~~ga~~~~~  107 (513)
                      +++|+++|++++.+
T Consensus        75 ~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   75 VKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHTTT-TTSS
T ss_pred             HHHHHHcCCCCCCc
Confidence            99999999998865

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=3e-17  Score=143.43  Aligned_cols=146  Identities=28%  Similarity=0.302  Sum_probs=121.9

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      ...+.+|+..+.+..|+.||+..++.....+ ..+.||||-|+.+||++||+.|+.+|++++.+...|+||||-||+-++
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD-~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRD-EDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccc-cccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            3568899999999999999999888765433 334999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHH-HHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR-CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~-iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      .+++-+||++|++++...+ ...||||+|+...+.. .+.+|+.+...                                
T Consensus       143 ~~va~~LLqhgaDVnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll~dryi--------------------------------  189 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTK-GLLTPLHLAAGNRNSRDTLELLLHDRYI--------------------------------  189 (228)
T ss_pred             hhHHHHHHhccCccccccc-ccchhhHHhhcccchHHHHHHHhhcccc--------------------------------
Confidence            9999999999999999885 7899999999877655 45555532110                                


Q ss_pred             hcccccCCCCcHHHHHHHcCC
Q 010335          170 FVNKAADGGITALHMAALNGY  190 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~  190 (513)
                      ....++..+.||+.+|-+.+-
T Consensus       190 ~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  190 HPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             ChhhhcCccchHHHHHHHhhh
Confidence            033455678899999988754

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-17  Score=177.14  Aligned_cols=211  Identities=24%  Similarity=0.190  Sum_probs=169.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCC---------CCCCCCCCCCChHHHHHHHc---CCHHHHHHHHhcCCC----CCcccC
Q 010335           46 NSPLHFAAAKGHNEIVALLLENG---------ADVNSRNYCGQTALMQACRY---GHWEVVQTLLLFRCN----VTRADY  109 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~G---------advn~~d~~g~TpLh~A~~~---g~~eiVk~LL~~ga~----~~~~~~  109 (513)
                      +.++..|...+.++.+..|+..+         .+++.+...|.|.||.|..+   ++.++++.|++.-..    +...+.
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            36788899999999998888766         67888888999999999874   466899999986433    334444


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcC
Q 010335          110 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG  189 (513)
Q Consensus       110 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g  189 (513)
                      ..|+||||+|+.+.+.++|++|++.+++.........+...+........          ...-.--.|..||.+||.-+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T----------~Y~G~~YfGEyPLSfAAC~n  251 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKST----------NYTGYFYFGEYPLSFAACTN  251 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccccccccccc----------CCcceeeeccCchHHHHHcC
Confidence            58999999999999999999999998876554444333322221111000          00011225889999999999


Q ss_pred             CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC--CCCcCCCCCcHHHHHHHcCcc
Q 010335          190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS--RMSLNCNGWLPLDVARMWGRH  267 (513)
Q Consensus       190 ~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad--~~~~d~~G~TpL~~A~~~g~~  267 (513)
                      +.+++++|+++|||++++|.+          |+|.||..+..-..++-.+++++|++  ...+|++|.|||.+|++-|+.
T Consensus       252 q~eivrlLl~~gAd~~aqDS~----------GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  252 QPEIVRLLLAHGADPNAQDSN----------GNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             CHHHHHHHHhcCCCCCccccC----------CChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhH
Confidence            999999999999999999988          99999999999999999999999999  889999999999999999999


Q ss_pred             chhhhcCCC
Q 010335          268 WLEPLLAPS  276 (513)
Q Consensus       268 ~iv~lL~~~  276 (513)
                      +|.+.+.+.
T Consensus       322 emf~~ile~  330 (782)
T KOG3676|consen  322 EMFQHILER  330 (782)
T ss_pred             HHHHHHHHh
Confidence            998877766

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=1e-17  Score=157.13  Aligned_cols=74  Identities=45%  Similarity=0.514  Sum_probs=43.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH
Q 010335          178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP  257 (513)
Q Consensus       178 G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp  257 (513)
                      ..||||+|+.+||.++|+.|++..+|+|+.+.+          |+||||||+..|...+.+-|+..||.+++-|+.|.||
T Consensus        67 ddtplhlaaahghrdivqkll~~kadvnavneh----------gntplhyacfwgydqiaedli~~ga~v~icnk~g~tp  136 (448)
T KOG0195|consen   67 DDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH----------GNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTP  136 (448)
T ss_pred             CCcchhhhhhcccHHHHHHHHHHhcccchhhcc----------CCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCc
Confidence            345555555555555555555555566655554          5566666666666566666666666665556666665


Q ss_pred             HHHH
Q 010335          258 LDVA  261 (513)
Q Consensus       258 L~~A  261 (513)
                      |+.|
T Consensus       137 ldka  140 (448)
T KOG0195|consen  137 LDKA  140 (448)
T ss_pred             hhhh
Confidence            5544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=3.1e-16  Score=127.66  Aligned_cols=89  Identities=39%  Similarity=0.567  Sum_probs=78.1

Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHH
Q 010335          116 LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ  195 (513)
Q Consensus       116 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~  195 (513)
                      ||+|+..|+.+++++|++.+..                                 ++.    |.||||+|+.+|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~---------------------------------~~~----~~~~l~~A~~~~~~~~~~   43 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD---------------------------------INL----GNTALHYAAENGNLEIVK   43 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST---------------------------------TTS----SSBHHHHHHHTTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC---------------------------------CCC----CCCHHHHHHHcCCHHHHH
Confidence            7999999999999999975432                                 222    789999999999999999


Q ss_pred             HHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcC
Q 010335          196 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN  251 (513)
Q Consensus       196 ~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d  251 (513)
                      +|++.|++++..+..          |+||||+|+.+|+.+++++|+++|++++.+|
T Consensus        44 ~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   44 LLLENGADINSQDKN----------GNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTTCTT-BSTT----------SSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHHhcccccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            999999999999866          9999999999999999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.67  E-value=5.1e-16  Score=164.59  Aligned_cols=189  Identities=30%  Similarity=0.309  Sum_probs=155.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCC-------CCccccCCCCCCcHHHHHHH---cCCHHHHHHHHHCCCC-CC---C-CCC
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNP-------CLAKYSTFGGLNSPLHFAAA---KGHNEIVALLLENGAD-VN---S-RNY   76 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~-------~~~~~~~~~~g~TpLh~Aa~---~g~~eivk~LL~~Gad-vn---~-~d~   76 (513)
                      ++++.|...|.++.+..|+..+-       +......-.-|.|.||.|..   .++.++++.|++.-.. +|   . -.+
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            67888999999999988887652       11111112235999999998   4456999999985321 11   1 236


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccC----------------------CCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335           77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADY----------------------LSGRTALHFAAVNGHVRCIRLVVAD  134 (513)
Q Consensus        77 ~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~----------------------~~G~TpLh~A~~~g~~~iv~~Ll~~  134 (513)
                      .|+||||+|+.+.+.++|++|++.|||++.+-.                      ..|..||-+|+--++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            799999999999999999999999999874321                      1488999999999999999999988


Q ss_pred             cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC--cccccccCC
Q 010335          135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN--VSAVTFHYG  212 (513)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad--vn~~~~~~~  212 (513)
                      +++                                 ++.+|..|+|.||+.+.+-..++..+++++|++  ....+..  
T Consensus       263 gAd---------------------------------~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~q--  307 (782)
T KOG3676|consen  263 GAD---------------------------------PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQ--  307 (782)
T ss_pred             CCC---------------------------------CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccC--
Confidence            765                                 889999999999999999999999999999999  6666655  


Q ss_pred             ccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335          213 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       213 ~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  243 (513)
                              |-|||.+|++.|..++.+.+++.
T Consensus       308 --------gLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  308 --------GLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             --------CCChHHHHHHhhhHHHHHHHHHh
Confidence                    99999999999999999999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=1.7e-15  Score=129.85  Aligned_cols=89  Identities=45%  Similarity=0.687  Sum_probs=54.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      |.||||+|+..|+.+++++|++.|.+.+..+..|.||||+|+..++.+++++|++++++++..+. .|.||+|+|+..++
T Consensus         7 g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~l~~a~~~~~   85 (126)
T cd00204           7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK-DGNTPLHLAARNGN   85 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCc
Confidence            35666666666666666666666666666666666666666666666666666666655544442 55555555555555


Q ss_pred             HHHHHHHHHc
Q 010335          125 VRCIRLVVAD  134 (513)
Q Consensus       125 ~~iv~~Ll~~  134 (513)
                      .+++++|+..
T Consensus        86 ~~~~~~L~~~   95 (126)
T cd00204          86 LDVVKLLLKH   95 (126)
T ss_pred             HHHHHHHHHc
Confidence            5555555543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.66  E-value=5.3e-16  Score=121.70  Aligned_cols=104  Identities=24%  Similarity=0.377  Sum_probs=92.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW   91 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~   91 (513)
                      ..+.+++++|.++.|+.....|-+++..  . +|++|||||+..|+++++++|+..|++++.+|++|.|||.-|++.||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI--Y-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH--h-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            5689999999999999999999666543  2 559999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335           92 EVVQTLLLFRCNVTRADYLSGRTALHFA  119 (513)
Q Consensus        92 eiVk~LL~~ga~~~~~~~~~G~TpLh~A  119 (513)
                      ++|++||+.|++-..... +|.+.+..+
T Consensus        81 ~cVklLL~~GAdrt~~~P-dG~~~~eat  107 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAP-DGTALIEAT  107 (117)
T ss_pred             HHHHHHHHcCcccceeCC-CchhHHhhc
Confidence            999999999999877664 777666544

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.66  E-value=1.3e-16  Score=149.75  Aligned_cols=160  Identities=28%  Similarity=0.312  Sum_probs=126.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH
Q 010335           14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEV   93 (513)
Q Consensus        14 L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~ei   93 (513)
                      ++.-++.||---|+..|+........ .+..|-+|||+|++.|+..+|+.||.+|+.+|..|.-..||||+|+.+||.++
T Consensus         4 if~wcregna~qvrlwld~tehdln~-gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdi   82 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNV-GDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDI   82 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCccccccc-ccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHH
Confidence            44556777766677666653332222 33445899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhccc
Q 010335           94 VQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK  173 (513)
Q Consensus        94 Vk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  173 (513)
                      |+.|+++.++++..+. .|.||||||+.-|...+.+-|++.|+.                                 ++.
T Consensus        83 vqkll~~kadvnavne-hgntplhyacfwgydqiaedli~~ga~---------------------------------v~i  128 (448)
T KOG0195|consen   83 VQKLLSRKADVNAVNE-HGNTPLHYACFWGYDQIAEDLISCGAA---------------------------------VNI  128 (448)
T ss_pred             HHHHHHHhcccchhhc-cCCCchhhhhhhcHHHHHHHHHhccce---------------------------------eee
Confidence            9999999999999886 999999999999999999999987754                                 777


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 010335          174 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVT  208 (513)
Q Consensus       174 ~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~  208 (513)
                      -+++|.|||..|--.-..-+.++--++|-++|...
T Consensus       129 cnk~g~tpldkakp~l~~~l~e~aek~gq~~nrip  163 (448)
T KOG0195|consen  129 CNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRIP  163 (448)
T ss_pred             cccCCCCchhhhchHHHHHHHHHHHHhCCCCCccc
Confidence            88899999987743222222233335677776544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=3.5e-15  Score=127.90  Aligned_cols=121  Identities=41%  Similarity=0.589  Sum_probs=110.0

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .+.++|+.|++.|+.+++++|++.+........  .|.||||+|+..++.+++++|++.|++++..+..|.||+|+|+..
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~--~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDN--DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            356889999999999999999999988644333  448999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV  132 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll  132 (513)
                      ++.+++++|++.+.+++..+. .|.|||++|+..++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999988888774 8999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=3.9e-14  Score=134.23  Aligned_cols=132  Identities=33%  Similarity=0.438  Sum_probs=108.9

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC-----HHHHHHHHHccCCCCccccchh
Q 010335           72 NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH-----VRCIRLVVADFVPSVPFEVMNT  146 (513)
Q Consensus        72 n~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~-----~~iv~~Ll~~~~~~~~~~~~~~  146 (513)
                      ...+..+.+++|.|+..+..+++++|+..|++++..+. .|.||||+|+..++     .+++++|++.+..         
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~---------  136 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD---------  136 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCC---------
Confidence            45566678888888888888888888888888866664 88888888888888     8888888877652         


Q ss_pred             hhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhH
Q 010335          147 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH  226 (513)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh  226 (513)
                                           ....+..+..|+||||+|+..|+.+++++|++.|++++..+..          |.|+|+
T Consensus       137 ---------------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~----------g~t~l~  185 (235)
T COG0666         137 ---------------------LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY----------GVTALD  185 (235)
T ss_pred             ---------------------CCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccC----------CCcchh
Confidence                                 0115566888999999999999999999999999999988766          999999


Q ss_pred             HHhhCCCHHHHHHHHHCC
Q 010335          227 FAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       227 ~Aa~~g~~eivk~LL~~G  244 (513)
                      +|+..++.++++.|++.+
T Consensus       186 ~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         186 PAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hhcccchHHHHHHHHhcC
Confidence            999999999999999976

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=6.6e-13  Score=125.81  Aligned_cols=125  Identities=38%  Similarity=0.470  Sum_probs=113.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcC
Q 010335          110 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG  189 (513)
Q Consensus       110 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g  189 (513)
                      ..+.++++.++..+..+++++|+..+..                                 ++..+..|.||||+|+..+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------~~~~~~~g~t~l~~a~~~~  117 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLLASGAD---------------------------------VNAKDADGDTPLHLAALNG  117 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHHHcCCC---------------------------------cccccCCCCcHHHHHHhcC
Confidence            3689999999999999999999877654                                 6778899999999999999


Q ss_pred             C-----HHHHHHHHHcCC---CcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335          190 Y-----FDCVQLLLDLHA---NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  261 (513)
Q Consensus       190 ~-----~eiv~~Ll~~Ga---dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A  261 (513)
                      +     .+++++|++.|+   +.+..+..          |.||||+|+..|+.+++++|++.|++++.++..|.|+++.|
T Consensus       118 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~----------g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a  187 (235)
T COG0666         118 NPPEGNIEVAKLLLEAGADLDVNNLRDED----------GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA  187 (235)
T ss_pred             CcccchHHHHHHHHHcCCCCCCccccCCC----------CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhh
Confidence            9     999999999999   44444655          99999999999999999999999999999999999999999


Q ss_pred             HHcCccchhhhcCCCC
Q 010335          262 RMWGRHWLEPLLAPSS  277 (513)
Q Consensus       262 ~~~g~~~iv~lL~~~~  277 (513)
                      ...++..++.++....
T Consensus       188 ~~~~~~~~~~~l~~~~  203 (235)
T COG0666         188 AKNGRIELVKLLLDKG  203 (235)
T ss_pred             cccchHHHHHHHHhcC
Confidence            9999999988887754

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.46  E-value=2.6e-13  Score=106.69  Aligned_cols=104  Identities=28%  Similarity=0.411  Sum_probs=87.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHH
Q 010335          114 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  193 (513)
Q Consensus       114 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~ei  193 (513)
                      --+.|++++|.++-|+-.+..+..                                 +|..- .|++|||+|+-.|+.++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~n---------------------------------Vn~~~-ggR~plhyAAD~GQl~i   49 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLN---------------------------------VNEIY-GGRTPLHYAADYGQLSI   49 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcccc---------------------------------HHHHh-CCcccchHhhhcchHHH
Confidence            346788899998888887754421                                 22222 68999999999999999


Q ss_pred             HHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335          194 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  261 (513)
Q Consensus       194 v~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A  261 (513)
                      +++|+..|++++.+|+.          |-|||.-|+..||.++|++||++|||...+.-+|.+.+..+
T Consensus        50 lefli~iGA~i~~kDKy----------gITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   50 LEFLISIGANIQDKDKY----------GITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHhccccCCcccc----------CCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999999988          99999999999999999999999999999988898776654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.43  E-value=2.8e-13  Score=99.39  Aligned_cols=54  Identities=46%  Similarity=0.699  Sum_probs=45.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLL   98 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL   98 (513)
                      |+||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+.+|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            489999999999999999999999999999999999999999999999999986

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=5.1e-13  Score=125.73  Aligned_cols=125  Identities=27%  Similarity=0.357  Sum_probs=110.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCH
Q 010335          112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  191 (513)
Q Consensus       112 G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~  191 (513)
                      -..+|.-++..|..+-...|++.                                 .+.+|..|..|.++|..|+..|+.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~---------------------------------vr~vn~~D~sGMs~LahAaykGnl   58 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST---------------------------------VRQVNQRDPSGMSVLAHAAYKGNL   58 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH---------------------------------hhhhhccCCCcccHHHHHHhcCcH
Confidence            35688888888888888888743                                 223788999999999999999999


Q ss_pred             HHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhh
Q 010335          192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  271 (513)
Q Consensus       192 eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~  271 (513)
                      ++|++||+.|+|+|.....         .+.||||+|+.+|+.++.++|++.|+.....|.-|+|+-.+|+.-|+.+.|.
T Consensus        59 ~~v~lll~~gaDvN~~qhg---------~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   59 TLVELLLELGADVNDKQHG---------TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             HHHHHHHHhCCCcCccccc---------ccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHH
Confidence            9999999999999987643         5899999999999999999999999999999999999999999999998888


Q ss_pred             hcCCCCC
Q 010335          272 LLAPSSD  278 (513)
Q Consensus       272 lL~~~~~  278 (513)
                      ++...-.
T Consensus       130 iINN~~t  136 (396)
T KOG1710|consen  130 IINNHIT  136 (396)
T ss_pred             HHhcccc
Confidence            7765443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=7.2e-13  Score=133.60  Aligned_cols=120  Identities=23%  Similarity=0.215  Sum_probs=105.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW   91 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~   91 (513)
                      -.|..|+..|.+|+|+.++..-.+...-++.  |-|+||-|+-.||.+||+|||+.|++||..|.+|+||||.|+..++.
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdE--GITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDE--GITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCcc--chhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence            4578899999999999999876555544444  48999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHHH
Q 010335           92 EVVQTLLLFRCNVTRADYLSGRTALHFAA--VNGHVRCIRLVVA  133 (513)
Q Consensus        92 eiVk~LL~~ga~~~~~~~~~G~TpLh~A~--~~g~~~iv~~Ll~  133 (513)
                      .+++.|++.|+-+......++.|+..-.-  ..|..++.++|..
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999999998877778889887653  4688999999974

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=2.5e-13  Score=100.34  Aligned_cols=55  Identities=38%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             HHHcC-CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335          197 LLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  261 (513)
Q Consensus       197 Ll~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A  261 (513)
                      ||++| ++++..|..          |.||||+|+.+|+.++|++|+++|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~----------G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKY----------GNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TT----------S--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCC----------CCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            67888 899999977          99999999999999999999999999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.36  E-value=3.1e-12  Score=141.27  Aligned_cols=104  Identities=33%  Similarity=0.346  Sum_probs=84.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 010335           13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE   92 (513)
Q Consensus        13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~e   92 (513)
                      .|+.|+..|+.+.++.|++.|++++..+..  |+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~--G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYD--GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            478888899999999999888887765443  489999999999999999999999999999988999999999999999


Q ss_pred             HHHHHHhc-------CCCCCcccCCCCCcHHHHH
Q 010335           93 VVQTLLLF-------RCNVTRADYLSGRTALHFA  119 (513)
Q Consensus        93 iVk~LL~~-------ga~~~~~~~~~G~TpLh~A  119 (513)
                      ++++|+++       |++.+.... .|.+|+..+
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~-~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSF-TGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCcccc-CCCCccchh
Confidence            99999888       777665553 666665544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=4.1e-12  Score=140.30  Aligned_cols=106  Identities=26%  Similarity=0.296  Sum_probs=96.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHH
Q 010335          114 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  193 (513)
Q Consensus       114 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~ei  193 (513)
                      +.|+.|+..|+.+.+++|++.+.+                                 ++..|..|+||||+|+.+|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad---------------------------------in~~d~~G~TpLh~Aa~~g~~ei  130 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD---------------------------------PNCRDYDGRTPLHIACANGHVQV  130 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCcHHHHHHHCCCHHH
Confidence            458899999999999999987654                                 67788899999999999999999


Q ss_pred             HHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC-------CCCCCCcCCCCCcHHHHHH
Q 010335          194 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-------GASRMSLNCNGWLPLDVAR  262 (513)
Q Consensus       194 v~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~-------Gad~~~~d~~G~TpL~~A~  262 (513)
                      |++|+++|++++..+..          |.||||+|+..|+.+++++|+++       |++++..+..|.+|+..+.
T Consensus       131 v~~LL~~Gadvn~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        131 VRVLLEFGADPTLLDKD----------GKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHCCCCCCCCCCC----------CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999999999999977          99999999999999999999999       9999999998888877654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.34  E-value=8e-12  Score=117.76  Aligned_cols=122  Identities=33%  Similarity=0.320  Sum_probs=108.2

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCChHHHHHHH
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQTALMQACR   87 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~-~d~~g~TpLh~A~~   87 (513)
                      +...+|+.++-.|+.+.+..||+.-..++..+..  |.|+|..|+.+|++++|++||+.|+|+|. ++..+.||||+|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~s--GMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPS--GMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCC--cccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            3457899999999999999999975555554444  49999999999999999999999999986 46788999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA  133 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~  133 (513)
                      .|+.++.++|++.|+.....+. -|+|+-..|+.-|+.++|..+-.
T Consensus        89 SGn~dvcrllldaGa~~~~vNs-vgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNS-VGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cCCchHHHHHHhccCccccccc-hhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999999988875 79999999999999999988753

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.4e-12  Score=96.41  Aligned_cols=55  Identities=49%  Similarity=0.700  Sum_probs=22.2

Q ss_pred             HHHCC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335           64 LLENG-ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA  119 (513)
Q Consensus        64 LL~~G-advn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A  119 (513)
                      ||++| ++++.+|..|.||||+|+.+|+.++|++|++.|++++..+. .|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~-~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDK-DGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---T-TS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC-CCCCHHHhC
Confidence            45555 66666666666666666666666666666666666666664 666666665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=3.1e-12  Score=93.80  Aligned_cols=54  Identities=44%  Similarity=0.660  Sum_probs=46.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335          178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  241 (513)
Q Consensus       178 G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL  241 (513)
                      |+||||+|+..|+.+++++|+++|+|++..|..          |.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~----------g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDED----------GRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TT----------S--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999866          999999999999999999996

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=1.6e-10  Score=117.00  Aligned_cols=91  Identities=33%  Similarity=0.343  Sum_probs=85.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV  125 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~  125 (513)
                      .-.|.-|+..|.+|+|+.++..=-|+...|..|.||||-|+-.||.+||+||+++|+++|..|. +||||||.|+..+++
T Consensus       551 LaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DS-dGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADS-DGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccC-CCCchhhhhhhcCch
Confidence            3456778999999999999998889999999999999999999999999999999999999996 999999999999999


Q ss_pred             HHHHHHHHccCC
Q 010335          126 RCIRLVVADFVP  137 (513)
Q Consensus       126 ~iv~~Ll~~~~~  137 (513)
                      .+++.|++.|..
T Consensus       630 ~~ckqLVe~Gaa  641 (752)
T KOG0515|consen  630 PMCKQLVESGAA  641 (752)
T ss_pred             HHHHHHHhccce
Confidence            999999988764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.95  E-value=5.5e-10  Score=118.32  Aligned_cols=101  Identities=28%  Similarity=0.315  Sum_probs=89.4

Q ss_pred             hHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335          165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       165 ~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  244 (513)
                      .....+.+.+|..|+|+||+|+..+..++++|||++|+|++.+|..         .|+||||-|+.+|+.+++-+||.+|
T Consensus        39 k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~E---------SG~taLHRaiyyG~idca~lLL~~g  109 (1267)
T KOG0783|consen   39 KSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEE---------SGYTALHRAIYYGNIDCASLLLSKG  109 (1267)
T ss_pred             HhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccc---------ccchHhhHhhhhchHHHHHHHHhcC
Confidence            3344568899999999999999999999999999999999999977         6999999999999999999999999


Q ss_pred             CCCCCcCCCCCcHHHHHHHcCccchhhhcC
Q 010335          245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLA  274 (513)
Q Consensus       245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~  274 (513)
                      +.+..+|++|..||++..+.-...+...+.
T Consensus       110 ~SL~i~Dkeglsplq~~~r~~~~~i~~~~d  139 (1267)
T KOG0783|consen  110 RSLRIKDKEGLSPLQFLSRVLSSTIHPVLD  139 (1267)
T ss_pred             CceEEecccCCCHHHHHhhccccccccccC
Confidence            999999999999999988755444444443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.91  E-value=2e-09  Score=108.36  Aligned_cols=94  Identities=31%  Similarity=0.397  Sum_probs=84.1

Q ss_pred             cccccCCCCc------HHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335          171 VNKAADGGIT------ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       171 i~~~d~~G~T------pLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  244 (513)
                      ...+|++|.|      -||..++.|+.+..-.||..||++|..+.+         .|.||||.|++.|+..-+++|+=+|
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpe---------kg~TpLHvAAk~Gq~~Q~ElL~vYG  190 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPE---------KGNTPLHVAAKAGQILQAELLAVYG  190 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcc---------cCCchhHHHHhccchhhhhHHhhcc
Confidence            4456777665      489999999999999999999999998876         5999999999999999999999999


Q ss_pred             CCCCCcCCCCCcHHHHHHHcCccchhhhc
Q 010335          245 ASRMSLNCNGWLPLDVARMWGRHWLEPLL  273 (513)
Q Consensus       245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL  273 (513)
                      ||+++.|.+|+||+.+|...||.++.+-|
T Consensus       191 AD~~a~d~~GmtP~~~AR~~gH~~laeRl  219 (669)
T KOG0818|consen  191 ADPGAQDSSGMTPVDYARQGGHHELAERL  219 (669)
T ss_pred             CCCCCCCCCCCcHHHHHHhcCchHHHHHH
Confidence            99999999999999999999998765443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.81  E-value=4.5e-09  Score=105.41  Aligned_cols=90  Identities=28%  Similarity=0.307  Sum_probs=83.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCcHHHHHHHcC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNG  123 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~-ga~~~~~~~~~G~TpLh~A~~~g  123 (513)
                      +.-++++|+..|++..++.+.-.|.|++.+|++.+|+||.|+..|+.+++|+|++. +.+++..+. +|+|||.-|...+
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR-w~rtPlDdA~~F~  584 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR-WGRTPLDDAKHFK  584 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhc-cCCCcchHhHhcC
Confidence            46789999999999999999999999999999999999999999999999999985 778887775 9999999999999


Q ss_pred             CHHHHHHHHHcc
Q 010335          124 HVRCIRLVVADF  135 (513)
Q Consensus       124 ~~~iv~~Ll~~~  135 (513)
                      |.+++++|-+..
T Consensus       585 h~~v~k~L~~~~  596 (622)
T KOG0506|consen  585 HKEVVKLLEEAQ  596 (622)
T ss_pred             cHHHHHHHHHHh
Confidence            999999997543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=2.3e-08  Score=102.10  Aligned_cols=121  Identities=23%  Similarity=0.260  Sum_probs=109.0

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCChHHHHHHH
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD--VNSRNYCGQTALMQACR   87 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gad--vn~~d~~g~TpLh~A~~   87 (513)
                      -++.|..|+..+|+-.++.+...|.++.....+.  .|.||+|+..|+-+||+|||++|..  ++..|..|.|+||.|+-
T Consensus       866 iseeil~av~~~D~~klqE~h~~gg~ll~~~~~~--~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLNGGSLLIQGPDH--CSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhcCCceEeeCcch--hhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            3466899999999999999999998887665555  7999999999999999999999864  56778899999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA  133 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~  133 (513)
                      .++..+.++|++.|+.+...+. .|.||-.-|-..|+.++..+|-+
T Consensus       944 ~~~r~vc~~lvdagasl~ktd~-kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKTDS-KGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             hcchHHHHHHHhcchhheeccc-CCCChHHHHHhcCCchHHHHHhh
Confidence            9999999999999999988886 89999999999999999999864

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.75  E-value=3.7e-08  Score=99.38  Aligned_cols=86  Identities=29%  Similarity=0.329  Sum_probs=62.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 010335           13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE   92 (513)
Q Consensus        13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~e   92 (513)
                      .||..++.|+++..-.||..|++.+.+.... |.||||+|++.|+.--+++|+-+|+|++..|..|+||+.+|-..||-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpek-g~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEK-GNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCccc-CCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            5777777777777777777777776654443 377777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHh
Q 010335           93 VVQTLLL   99 (513)
Q Consensus        93 iVk~LL~   99 (513)
                      +.+.|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            7666654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.67  E-value=1.4e-08  Score=102.06  Aligned_cols=95  Identities=20%  Similarity=0.258  Sum_probs=87.4

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC-CCCCCCcCC
Q 010335          174 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNC  252 (513)
Q Consensus       174 ~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~-Gad~~~~d~  252 (513)
                      ++.++...+++|+..|++..++.+.-.|.|++..|.+          .+|+||+|+..|+.+++++||+. +.+++.+|.
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD----------~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR  571 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYD----------DRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR  571 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccc----------cchhheeecccCceeHHHHHHHHHcCCCChhhc
Confidence            3445678999999999999999999999999999987          89999999999999999999986 999999999


Q ss_pred             CCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          253 NGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       253 ~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      .|+|||+-|...+|.+++++|.+...
T Consensus       572 w~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  572 WGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            99999999999999999999977544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.66  E-value=6e-08  Score=99.54  Aligned_cols=92  Identities=32%  Similarity=0.420  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCc--cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLA--KYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~--~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      ..|..|+...|+..+-.||.+|....  .....++|.|+||+|+..|++.+.++|+=+|+|+-.+|..|.|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            44555555555555555555554332  2233344455555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHhcCCC
Q 010335           90 HWEVVQTLLLFRCN  103 (513)
Q Consensus        90 ~~eiVk~LL~~ga~  103 (513)
                      .-|++..|+++|+.
T Consensus       706 sqec~d~llq~gcp  719 (749)
T KOG0705|consen  706 SQECIDVLLQYGCP  719 (749)
T ss_pred             cHHHHHHHHHcCCC
Confidence            55555555555543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.65  E-value=3.2e-08  Score=62.77  Aligned_cols=29  Identities=45%  Similarity=0.733  Sum_probs=27.8

Q ss_pred             CCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335          221 GSTPLHFAACGGNLKCCQVLLSRGASRMS  249 (513)
Q Consensus       221 G~TpLh~Aa~~g~~eivk~LL~~Gad~~~  249 (513)
                      |+||||+|+..|+.++|++||++|+|+|.
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            89999999999999999999999999874

>PF13606 Ank_3: Ankyrin repeat

Probab=98.61  E-value=4.7e-08  Score=61.98  Aligned_cols=30  Identities=47%  Similarity=0.641  Sum_probs=28.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 010335          177 GGITALHMAALNGYFDCVQLLLDLHANVSA  206 (513)
Q Consensus       177 ~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~  206 (513)
                      +|+||||+|+.+|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.61  E-value=5.6e-08  Score=63.26  Aligned_cols=32  Identities=38%  Similarity=0.576  Sum_probs=30.6

Q ss_pred             CCchhHHHhhCCCHHHHHHHHHCCCCCCCcCC
Q 010335          221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNC  252 (513)
Q Consensus       221 G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~  252 (513)
                      |.||||+|+..|+.+++++|+++|++++.+|+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            89999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.56  E-value=3.6e-08  Score=104.88  Aligned_cols=76  Identities=29%  Similarity=0.392  Sum_probs=63.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNY-CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV  121 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~-~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~  121 (513)
                      |+|+||+|+..|...+++|||++|+|++.+|+ .|.||||.|+.+|++|++-+||.+|+.+...|. +|..||.+..+
T Consensus        52 GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk-eglsplq~~~r  128 (1267)
T KOG0783|consen   52 GRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK-EGLSPLQFLSR  128 (1267)
T ss_pred             ccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc-cCCCHHHHHhh
Confidence            48888888888888888888888888888885 588888888888888888888888888877775 88888887665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.56  E-value=1.1e-07  Score=61.92  Aligned_cols=31  Identities=58%  Similarity=1.024  Sum_probs=23.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRN   75 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d   75 (513)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4777777777777777777777777777765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.49  E-value=4e-07  Score=98.29  Aligned_cols=130  Identities=26%  Similarity=0.264  Sum_probs=100.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENG----ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV  121 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~G----advn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~  121 (513)
                      ..-...|+.+|+...|+..++..    .++|-+|.-|+++|+.|+.+.+.|++++|+++....        ..+|.+|+.
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~   97 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIA   97 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHH
Confidence            45577889999999998888742    457888999999999999999999999999887654        348999999


Q ss_pred             cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335          122 NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH  201 (513)
Q Consensus       122 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G  201 (513)
                      .|..++|++++.+.........     ..                  ..-...-..+.|||++||..+++||++.|+++|
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~-----~~------------------d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg  154 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLER-----SG------------------DANSPHFTPDITPLMLAAHLNNFEILQCLLTRG  154 (822)
T ss_pred             HHHHHHHHHHHhcccccchhcc-----cc------------------ccCcccCCCCccHHHHHHHhcchHHHHHHHHcC
Confidence            9999999999977544322111     00                  001112234679999999999999999999999


Q ss_pred             CCccc
Q 010335          202 ANVSA  206 (513)
Q Consensus       202 advn~  206 (513)
                      +.+..
T Consensus       155 ~~i~~  159 (822)
T KOG3609|consen  155 HCIPI  159 (822)
T ss_pred             CCCCC
Confidence            98753

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=2e-07  Score=95.37  Aligned_cols=81  Identities=30%  Similarity=0.391  Sum_probs=69.2

Q ss_pred             cHHHHHHHcCCHHHHHHHH--HcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH
Q 010335          180 TALHMAALNGYFDCVQLLL--DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP  257 (513)
Q Consensus       180 TpLh~Aa~~g~~eiv~~Ll--~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp  257 (513)
                      -|||+++.....+-+..++  +.+..++..|..          |.||||+|+..|+.+.++.|+.+||++..+|++||+|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~----------g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~   91 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPP----------GRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSP   91 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCC----------CCccHHHHHHhcCHHHHHHHHhcCCCccccccccccH
Confidence            4699999988876665543  345567777766          9999999999999999999999999999999999999


Q ss_pred             HHHHHHcCccchh
Q 010335          258 LDVARMWGRHWLE  270 (513)
Q Consensus       258 L~~A~~~g~~~iv  270 (513)
                      ||-|+..|+..++
T Consensus        92 L~EAv~~g~~q~i  104 (560)
T KOG0522|consen   92 LHEAVSTGNEQII  104 (560)
T ss_pred             HHHHHHcCCHHHH
Confidence            9999999987554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.43  E-value=9.1e-07  Score=90.67  Aligned_cols=120  Identities=24%  Similarity=0.246  Sum_probs=101.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhh
Q 010335           82 LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK  161 (513)
Q Consensus        82 Lh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (513)
                      |..|+..+.+--++.+...|.++...+. +..+.||+|+..|+-++|++|++++.+                        
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~-~~~sllh~a~~tg~~eivkyildh~p~------------------------  924 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGP-DHCSLLHYAAKTGNGEIVKYILDHGPS------------------------  924 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCc-chhhHHHHHHhcCChHHHHHHHhcCCH------------------------
Confidence            4556666665555556667777776664 788999999999999999999988753                        


Q ss_pred             hchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335          162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  241 (513)
Q Consensus       162 ~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL  241 (513)
                             .+++..|..|.|+||-|+..++..+.++|++.|+.+-..|..          |.||-.-|-+.|..++..+|-
T Consensus       925 -------elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~k----------g~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  925 -------ELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSK----------GKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             -------HHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccC----------CCChHHHHHhcCCchHHHHHh
Confidence                   336677889999999999999999999999999999998877          999999999999999999986


Q ss_pred             HC
Q 010335          242 SR  243 (513)
Q Consensus       242 ~~  243 (513)
                      .+
T Consensus       988 ~r  989 (1004)
T KOG0782|consen  988 SR  989 (1004)
T ss_pred             hh
Confidence            54

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.39  E-value=2.1e-07  Score=66.78  Aligned_cols=48  Identities=33%  Similarity=0.751  Sum_probs=39.8

Q ss_pred             cccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335          317 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  376 (513)
Q Consensus       317 ~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~  376 (513)
                      ...|.||++...++++.||||. +|..|+..+....            ..||+||.+|.++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRK------------KKCPICRQPIESV   50 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTT------------SBBTTTTBB-SEE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccC------------CCCCcCChhhcCC
Confidence            3679999999999999999999 9999999997632            2599999999764

...

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.38  E-value=9.7e-07  Score=90.89  Aligned_cols=92  Identities=32%  Similarity=0.390  Sum_probs=81.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCC--C--CCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc
Q 010335           47 SPLHFAAAKGHNEIVALLLENGADV--N--SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN  122 (513)
Q Consensus        47 TpLh~Aa~~g~~eivk~LL~~Gadv--n--~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~  122 (513)
                      .-|.-|+...++..+-+||.+|...  |  .-+.+|.|+||+|+..|++.+.++|+=+|+++...|. +|+|+|.||-+.
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda-~g~t~l~yar~a  704 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA-HGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc-CCchhhhhHhhc
Confidence            3477889999999999999998643  2  2356789999999999999999999999999999996 999999999999


Q ss_pred             CCHHHHHHHHHccCCCC
Q 010335          123 GHVRCIRLVVADFVPSV  139 (513)
Q Consensus       123 g~~~iv~~Ll~~~~~~~  139 (513)
                      |..+++..|+.+|.++.
T Consensus       705 ~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPDE  721 (749)
T ss_pred             ccHHHHHHHHHcCCCcc
Confidence            99999999999887654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.35  E-value=1.1e-06  Score=90.00  Aligned_cols=89  Identities=27%  Similarity=0.257  Sum_probs=56.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW   91 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~   91 (513)
                      -+||.++...+.+-+..++...........+-.|+||||+|+..|+.+.++.|+..|+|+..+|..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            34677777777776666554432222222222236777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhc
Q 010335           92 EVVQTLLLF  100 (513)
Q Consensus        92 eiVk~LL~~  100 (513)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            666666543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.33  E-value=1.9e-06  Score=93.14  Aligned_cols=123  Identities=19%  Similarity=0.180  Sum_probs=101.1

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCC--CccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPC--LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQA   85 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~--~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A   85 (513)
                      +.++..+..|+..||+-.|+..++....  ++....+.-|.++|+.|+.+.+.+++++|++.+..+       ..+|.+|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~a   95 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLA   95 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHH
Confidence            5567889999999999999999987544  444445555699999999999999999999987654       4589999


Q ss_pred             HHcCCHHHHHHHHhcCCCC---------CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCC
Q 010335           86 CRYGHWEVVQTLLLFRCNV---------TRADYLSGRTALHFAAVNGHVRCIRLVVADFVP  137 (513)
Q Consensus        86 ~~~g~~eiVk~LL~~ga~~---------~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~  137 (513)
                      +..|..++|+.++.+-...         +......+-|||.+|+..++.++++.|+.++..
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            9999999999999864332         222233678999999999999999999988764

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.8e-07  Score=65.52  Aligned_cols=50  Identities=32%  Similarity=0.681  Sum_probs=43.2

Q ss_pred             ccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeee
Q 010335          318 DTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK  378 (513)
Q Consensus       318 ~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~  378 (513)
                      ++|.||.+.+-+.+.--|||. +|..|++++-..           +...||+||.+|.++.+
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-----------~~g~CPiCRapi~dvIk   58 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-----------LHGCCPICRAPIKDVIK   58 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-----------cCCcCcchhhHHHHHHH
Confidence            899999999999999999999 899999999643           23369999999987754

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.14  E-value=1.8e-06  Score=95.69  Aligned_cols=88  Identities=36%  Similarity=0.453  Sum_probs=81.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCc
Q 010335          177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL  256 (513)
Q Consensus       177 ~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~T  256 (513)
                      .|.|+||.|+.++..-++++|++.|+++|..+..          |.||||.+...|+...+.+|+++||+.++.+.+|.+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~----------g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~  724 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSK----------GRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKL  724 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhcc----------CCCcchhhhhhcccchhhhhccccccccccCccCcc
Confidence            5789999999999999999999999999999987          999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCccchhhhcC
Q 010335          257 PLDVARMWGRHWLEPLLA  274 (513)
Q Consensus       257 pL~~A~~~g~~~iv~lL~  274 (513)
                      ||++|....+.+++-++.
T Consensus       725 ~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  725 PLDIAMEAANADIVLLLR  742 (785)
T ss_pred             hhhHHhhhccccHHHHHh
Confidence            999998887666655443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.12  E-value=3.1e-06  Score=93.88  Aligned_cols=102  Identities=29%  Similarity=0.299  Sum_probs=87.8

Q ss_pred             HhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccC
Q 010335           30 LDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADY  109 (513)
Q Consensus        30 L~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~  109 (513)
                      +..+.+++.......|.|+||.|+..|..-++++||++|+++|..|..|.||||.+...|+...+..|++.|++.+..+.
T Consensus       641 ~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~  720 (785)
T KOG0521|consen  641 LAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP  720 (785)
T ss_pred             hcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc
Confidence            34445555443334458999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHH
Q 010335          110 LSGRTALHFAAVNGHVRCIRLVV  132 (513)
Q Consensus       110 ~~G~TpLh~A~~~g~~~iv~~Ll  132 (513)
                       .|.++|++|....+.+++-++.
T Consensus       721 -~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  721 -DGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             -cCcchhhHHhhhccccHHHHHh
Confidence             9999999998877777766654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.09  E-value=7.7e-06  Score=80.53  Aligned_cols=71  Identities=28%  Similarity=0.292  Sum_probs=57.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335           48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA  119 (513)
Q Consensus        48 pLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A  119 (513)
                      -|..|++.|+++.|++|++.|++||.+|....+||.+|+..||.++||+||++|+--.... ..|.-.+.-|
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdt-f~G~RC~Yga  109 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDT-FDGDRCHYGA  109 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccc-cCcchhhhhh
Confidence            5888999999999999999999999999888899999999999999999999888665444 3666554443

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=4.1e-06  Score=82.48  Aligned_cols=55  Identities=29%  Similarity=0.657  Sum_probs=46.6

Q ss_pred             cccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335          315 DDADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      +....|+||+....+++.+||+|. +|..|+..|--.            ...|||||++|..+..+-.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q------------~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ------------TNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh------------hcCCCccccchHhhheecc
Confidence            447899999999999999999999 899999999522            1249999999998877654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.80  E-value=5.3e-05  Score=74.80  Aligned_cols=75  Identities=29%  Similarity=0.449  Sum_probs=62.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      ..|..|++.||.+.|++|++.|.+++..+.+.  .+||.+|+.-||.++|++||++|+--+.-..+|... ||++.+.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD--~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFD--SSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND  112 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhccc--ccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH
Confidence            46899999999999999999999999888887  899999999999999999999998654444556554 4444443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.78  E-value=6.8e-05  Score=67.53  Aligned_cols=58  Identities=29%  Similarity=0.234  Sum_probs=37.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 010335           46 NSPLHFAAAKGHNEIVALLLENG-ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCN  103 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~G-advn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~  103 (513)
                      +|+|+.|+..|+.+.+.||+.+| ++|...|..|.+++.+|-+.|+.++|+.|.+.-.+
T Consensus        13 WTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen   13 WTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             chHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            66666666666666666666666 66666666666666666666666666666665433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.77  E-value=4.4e-05  Score=68.73  Aligned_cols=66  Identities=26%  Similarity=0.248  Sum_probs=59.9

Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335          171 VNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  246 (513)
                      +|.+|..|||+|+.|+..|..+.+.||+.+| +.+...+..          |.+++.+|-+.|..++|+.|.++-.+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~s----------sldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDES----------SLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccc----------cchHHHHHHhcChHHHHHHHHHHhcc
Confidence            7889999999999999999999999999999 888888876          99999999999999999999987433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.68  E-value=6e-05  Score=83.54  Aligned_cols=129  Identities=19%  Similarity=0.109  Sum_probs=97.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHH-hcCCCCCcccCCCCCcHHHHHH
Q 010335           43 GGLNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLL-LFRCNVTRADYLSGRTALHFAA  120 (513)
Q Consensus        43 ~~g~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL-~~ga~~~~~~~~~G~TpLh~A~  120 (513)
                      -.+++.||+++..++.-.++.+++- |......|.+|...+|+ |..++.+.+-+|+ -.|..++.++. .|+||||||+
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~-~G~tpL~wAa  649 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR-NGWTPLHWAA  649 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccC-CCCcccchHh
Confidence            3458999999999999999999986 76667788888889998 4455555544444 46788888886 9999999999


Q ss_pred             HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335          121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL  200 (513)
Q Consensus       121 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~  200 (513)
                      ..|+..++..|++-++......                           ......-.|.|+-.+|..+|+..+.-+|-+.
T Consensus       650 ~~G~e~l~a~l~~lga~~~~~t---------------------------dps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPGAVT---------------------------DPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hcCHHHHHHHHHHhcccccccc---------------------------CCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999997655432000                           0233344678888888888888887777664

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.67  E-value=5.4e-05  Score=83.85  Aligned_cols=134  Identities=22%  Similarity=0.188  Sum_probs=93.5

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH-HccCCCCccccchhhh
Q 010335           71 VNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVV-ADFVPSVPFEVMNTQI  148 (513)
Q Consensus        71 vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~-ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll-~~~~~~~~~~~~~~~~  148 (513)
                      +......|+|.||+++..++.-+++.+++- |......+. +|...+|+++ .++.+..-+|+ -++             
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~-d~qgV~hfca-~lg~ewA~ll~~~~~-------------  631 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR-DGQGVIHFCA-ALGYEWAFLPISADG-------------  631 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcc-cCCChhhHhh-hcCCceeEEEEeecc-------------
Confidence            445566788999999998888888888875 544444443 6777888844 44444433332 111             


Q ss_pred             cccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHH
Q 010335          149 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  228 (513)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  228 (513)
                                          .-++.+|..|+||||+|+.+|+..++..|++.|++........    ...-.|.|+-.+|
T Consensus       632 --------------------~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps----~~~p~g~ta~~la  687 (975)
T KOG0520|consen  632 --------------------VAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPS----PETPGGKTAADLA  687 (975)
T ss_pred             --------------------cccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCC----CCCCCCCchhhhh
Confidence                                1177888999999999999999999999998888776444221    1112488888888


Q ss_pred             hhCCCHHHHHHHHHC
Q 010335          229 ACGGNLKCCQVLLSR  243 (513)
Q Consensus       229 a~~g~~eivk~LL~~  243 (513)
                      -.+|+..+.-+|-+.
T Consensus       688 ~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  688 RANGHKGIAGYLSEK  702 (975)
T ss_pred             hcccccchHHHHhhh
Confidence            888888888877654

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=2.3e-05  Score=74.52  Aligned_cols=48  Identities=27%  Similarity=0.747  Sum_probs=41.9

Q ss_pred             ccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          316 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      ....|.||+|.+.+-++++|||. .|.+|..++.                -|||||+.|++++++
T Consensus       299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----------------eCPICRqyi~rvvri  347 (350)
T KOG4275|consen  299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----------------ECPICRQYIVRVVRI  347 (350)
T ss_pred             HHHHHHHHhcCCcceEEeecCcEEeehhhccccc----------------cCchHHHHHHHHHhh
Confidence            37899999999999999999999 7999995553                399999999987764

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=97.20  E-value=0.00029  Score=64.39  Aligned_cols=68  Identities=21%  Similarity=0.414  Sum_probs=45.8

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCC----CCCCCCCCCCCCccccceeeecCC
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEM----VGPPGSIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~----~~~~~~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      ......|.||++...+.+..+|||.+|..|...+....+.+...    ........||+||..|.....+|=
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi   86 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI   86 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence            34567899999999888999999999999998764322111000    001123469999999876544443

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.17  E-value=0.00022  Score=49.48  Aligned_cols=41  Identities=37%  Similarity=0.767  Sum_probs=32.0

Q ss_pred             ccchhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCc
Q 010335          318 DTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  370 (513)
Q Consensus       318 ~~C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr  370 (513)
                      +.|.||++..   ..++..+|||.+|.+|...+.....            .||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~------------~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN------------SCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS------------B-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC------------cCCccC
Confidence            4689999765   4667889999999999999976632            599998

...

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.16  E-value=0.00017  Score=71.50  Aligned_cols=54  Identities=28%  Similarity=0.619  Sum_probs=43.6

Q ss_pred             ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      .-+.|.||.+..-+|...||||.+|..|.-.+...+          +.-.||+||-+|.+...+
T Consensus       368 TFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd----------~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  368 TFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD----------EGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             hHHHHHHhhccCCCcccccccchHHHHHHHhhcccC----------CCCCCCceeeEeccccce
Confidence            357899999999999999999999999997775332          122499999999877544

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00021  Score=68.50  Aligned_cols=49  Identities=35%  Similarity=0.845  Sum_probs=41.7

Q ss_pred             CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          313 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       313 s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      .......|.+|++...+..+.||||.+|-.|.+..|.+..            -||+||...
T Consensus       235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~------------eCPlCR~~~  283 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA------------ECPLCREKF  283 (293)
T ss_pred             CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc------------CCCcccccC
Confidence            3445689999999999999999999999999999997741            299999764

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.12  E-value=0.00041  Score=66.19  Aligned_cols=52  Identities=27%  Similarity=0.697  Sum_probs=39.7

Q ss_pred             ccccchhhhcccce--------EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          316 DADTCAVCLERACT--------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       316 ~~~~C~iC~~~~~~--------v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      ....|.||++....        .+..+|||.+|..|........            ..||+||..+.++++.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~------------~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK------------NTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC------------CCCCCCCCEeeEEeee
Confidence            45899999986432        3556899999999998875432            2599999998877653

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.04  E-value=0.00062  Score=69.71  Aligned_cols=69  Identities=22%  Similarity=0.195  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH
Q 010335          190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  262 (513)
Q Consensus       190 ~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~  262 (513)
                      -.+.|++|.+++.+.|..-....    ...-..|+||||+..|.-++|.+||+.|+|+..+|..|.||.+++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~----~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEA----NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccc----cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            36778899998887764332110    0112679999999999999999999999999999999999999987

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00035  Score=65.05  Aligned_cols=59  Identities=25%  Similarity=0.481  Sum_probs=49.2

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      ....-.|.||+|...+-+...|||.+|-.|..++.....         .+..||+|+..|..-..+|=
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~---------~~~~cPVCK~~Vs~~~vvPl  102 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP---------NSKECPVCKAEVSIDTVVPL  102 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcC---------CCeeCCccccccccceEEee
Confidence            345678999999999999999999999999999987642         45579999988887766664

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=96.98  E-value=0.00058  Score=46.02  Aligned_cols=38  Identities=29%  Similarity=0.818  Sum_probs=30.0

Q ss_pred             chhhhcccceE-EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335          320 CAVCLERACTV-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  369 (513)
Q Consensus       320 C~iC~~~~~~v-~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C  369 (513)
                      |.||++...+. +..+|||.+|..|........            ..||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~------------~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN------------PKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT------------SB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc------------CCCcCC
Confidence            68899888777 789999999999999886652            259988

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=96.98  E-value=0.00085  Score=46.00  Aligned_cols=42  Identities=26%  Similarity=0.659  Sum_probs=29.8

Q ss_pred             chhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335          320 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  369 (513)
Q Consensus       320 C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C  369 (513)
                      |.||++-..+-+.++|||.+|..|...+-.....        ....||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~--------~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG--------SGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS--------ST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCC--------cCCCCcCC
Confidence            7899999999999999999999999888654321        11579988

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=96.77  E-value=0.00012  Score=52.44  Aligned_cols=44  Identities=23%  Similarity=0.520  Sum_probs=38.0

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhcc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRK  419 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~  419 (513)
                      .|++|......++.+|+ |           . +|..|+....+....||+||++|.+
T Consensus         4 ~C~iC~~~~~~~~~~pCgH-----------~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    4 ECPICFENPRDVVLLPCGH-----------LCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             B-TTTSSSBSSEEEETTCE-----------EEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             CCccCCccCCceEEeCCCC-----------hHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            59999999999999999 7           5 9999998888888999999999864

...

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=96.75  E-value=0.0011  Score=45.99  Aligned_cols=40  Identities=33%  Similarity=0.856  Sum_probs=30.7

Q ss_pred             chhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcc
Q 010335          320 CAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH  371 (513)
Q Consensus       320 C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~  371 (513)
                      |.+|.+..   .......|||.+|..|...+. .           ..+.||+||.
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~-----------~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-G-----------KSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-C-----------CCCCCcCCCC
Confidence            66777665   346888999999999997775 1           3457999984

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=96.75  E-value=0.0013  Score=45.21  Aligned_cols=44  Identities=36%  Similarity=0.775  Sum_probs=32.7

Q ss_pred             cchhhhccc-ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          319 TCAVCLERA-CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       319 ~C~iC~~~~-~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      .|.||.+.. ..+...+|||.+|..|...+...           +...||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-----------~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-----------GKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-----------CcCCCCCCCCcC
Confidence            378888877 44455569999999999877644           233699999764

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.00054  Score=67.83  Aligned_cols=49  Identities=33%  Similarity=0.687  Sum_probs=38.2

Q ss_pred             cccccchhhhcccceEEeeCCCccc-chhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          315 DDADTCAVCLERACTVAAEGCRHEL-CVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~-C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      ...+.|.||++.+-+..+.||||.+ |..|...+                +.||+||+.|...+++
T Consensus       303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l----------------~~CPvCR~rI~~~~k~  352 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL----------------PQCPVCRQRIRLVRKR  352 (355)
T ss_pred             CCCCceEEecCCccceeeecCCcEEEchHHHhhC----------------CCCchhHHHHHHHHHH
Confidence            3568999999999999999999994 55554332                1499999999876653

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.00099  Score=59.41  Aligned_cols=49  Identities=27%  Similarity=0.718  Sum_probs=38.0

Q ss_pred             ccccccchhhhcccceE--EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          314 SDDADTCAVCLERACTV--AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v--~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ......|.||++...-.  +...|||.||.+|+.....+..            +||+|+..|.
T Consensus       128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~------------~CP~C~kkIt  178 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN------------KCPTCRKKIT  178 (187)
T ss_pred             cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCC------------CCCCcccccc
Confidence            44568899999865544  5689999999999988865532            5999997654

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.62  E-value=0.0015  Score=44.44  Aligned_cols=40  Identities=35%  Similarity=0.830  Sum_probs=32.5

Q ss_pred             chhhhcccceEE-eeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335          320 CAVCLERACTVA-AEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  369 (513)
Q Consensus       320 C~iC~~~~~~v~-~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C  369 (513)
                      |.||++...... ..+|||.+|..|...+-...          +...||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~----------~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS----------GSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT----------SSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhc----------CCccCCcC
Confidence            678998887776 99999999999999987641          23469998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00248 ANK ankyrin repeats

Probab=96.61  E-value=0.0034  Score=37.61  Aligned_cols=28  Identities=50%  Similarity=0.782  Sum_probs=25.8

Q ss_pred             CCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335          221 GSTPLHFAACGGNLKCCQVLLSRGASRM  248 (513)
Q Consensus       221 G~TpLh~Aa~~g~~eivk~LL~~Gad~~  248 (513)
                      |.||||+|+..++.++++.|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.59  E-value=0.004  Score=37.30  Aligned_cols=26  Identities=54%  Similarity=0.945  Sum_probs=16.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCC
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGADV   71 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gadv   71 (513)
                      .||||+|+..++.+++++|++.|.++
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            56666666666666666666666544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.50  E-value=0.0045  Score=63.62  Aligned_cols=62  Identities=27%  Similarity=0.293  Sum_probs=37.1

Q ss_pred             HHHHHHHHHCCCCCCC------CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335           58 NEIVALLLENGADVNS------RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA  120 (513)
Q Consensus        58 ~eivk~LL~~Gadvn~------~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~  120 (513)
                      .+.+++|.+++++.|.      .++...|+||+|+..|.-++|.+||+.|+|+...+. .|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~-~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDG-AGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhccc-CCCCcccccc
Confidence            4555666666555432      334455666666666666666666666666666664 6666666654

>PHA02926 zinc finger-like protein; Provisional

Probab=96.50  E-value=0.002  Score=59.67  Aligned_cols=57  Identities=25%  Similarity=0.584  Sum_probs=40.8

Q ss_pred             cccccchhhhcccc---------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335          315 DDADTCAVCLERAC---------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  377 (513)
Q Consensus       315 ~~~~~C~iC~~~~~---------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~  377 (513)
                      .....|.||++..-         .-...+|+|.+|..|.........      .+.....||+||.....++
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~------~~~~~rsCPiCR~~f~~I~  233 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR------ETGASDNCPICRTRFRNIT  233 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc------ccCcCCcCCCCcceeeeec
Confidence            35689999998531         236779999999999998876431      1123456999998877443

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.0016  Score=67.42  Aligned_cols=52  Identities=29%  Similarity=0.697  Sum_probs=42.5

Q ss_pred             cccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          317 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       317 ~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      ...|.||++.+.......|||.+|..|.|.+-....    ..   +...||+||..|.-
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~----~~---~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA----IK---GPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc----cc---CCccCCchhhhccc
Confidence            688999999998888888999999999999865531    11   33479999999876

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.0016  Score=61.84  Aligned_cols=47  Identities=30%  Similarity=0.687  Sum_probs=39.0

Q ss_pred             ccccchhhhcccceEEeeCCCcccchhhHhH-hhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          316 DADTCAVCLERACTVAAEGCRHELCVRCALY-LCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~-l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      ....|.+|++..-...+.+|||.+|-.|.+. ++...           .-.||+||..+
T Consensus       214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k-----------~~~CplCRak~  261 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK-----------YEFCPLCRAKV  261 (271)
T ss_pred             cccceeeeecccCCcccccccchhhHHHHHHHHHhhc-----------cccCchhhhhc
Confidence            3567999999999999999999999999998 65442           22699999764

>smart00184 RING Ring finger

Probab=95.95  E-value=0.0055  Score=40.33  Aligned_cols=39  Identities=31%  Similarity=0.821  Sum_probs=30.9

Q ss_pred             chhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335          320 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  369 (513)
Q Consensus       320 C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C  369 (513)
                      |.||++........+|||.+|..|...+...           +...||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~-----------~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS-----------GNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHh-----------CcCCCCCC
Confidence            6788888888888999999999999877541           23359987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.66  E-value=0.013  Score=45.48  Aligned_cols=43  Identities=37%  Similarity=0.838  Sum_probs=32.1

Q ss_pred             ccccchhhhccc-------------ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCc
Q 010335          316 DADTCAVCLERA-------------CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  370 (513)
Q Consensus       316 ~~~~C~iC~~~~-------------~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr  370 (513)
                      ..+.|.||++..             +.+...+|||.+...|........+            .||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN------------TCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS------------B-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC------------cCCCCC
Confidence            345699998654             6777889999999999988875532            599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=95.64  E-value=0.0072  Score=41.54  Aligned_cols=31  Identities=29%  Similarity=0.638  Sum_probs=19.3

Q ss_pred             chhhhcccce----EEeeCCCcccchhhHhHhhccC
Q 010335          320 CAVCLERACT----VAAEGCRHELCVRCALYLCSTN  351 (513)
Q Consensus       320 C~iC~~~~~~----v~~~~Cgh~~C~~C~l~l~~~~  351 (513)
                      |.||.+ ..+    -..++|||.+|.+|...+..+.
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence            678888 544    4556899999999999998753

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.0055  Score=57.60  Aligned_cols=43  Identities=40%  Similarity=0.684  Sum_probs=35.5

Q ss_pred             chhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeee
Q 010335          320 CAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK  378 (513)
Q Consensus       320 C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~  378 (513)
                      |..|.++...|...||.|. +|..|.-. +               ..||+|+..+.+.+-
T Consensus       161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-~---------------~~CPiC~~~~~s~~~  204 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRHLCLCGICDES-L---------------RICPICRSPKTSSVE  204 (207)
T ss_pred             ceecCcCCceEEeecccceEeccccccc-C---------------ccCCCCcChhhceee
Confidence            9999999999999999999 89888832 1               139999988776653

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.50  E-value=0.1  Score=47.37  Aligned_cols=47  Identities=19%  Similarity=0.221  Sum_probs=20.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q 010335           48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL   97 (513)
Q Consensus        48 pLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~L   97 (513)
                      .|..|+..+.+.|++..-+...+-   -...++-+-.||+..+.|+|+|+
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI   95 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWI   95 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHH
Confidence            344444455555544443322110   11234444455555555555554

These proteins may be involved in promoting survival of infected macrophages [].

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.47  E-value=0.01  Score=58.07  Aligned_cols=59  Identities=25%  Similarity=0.537  Sum_probs=46.8

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  382 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  382 (513)
                      .++...|.||.+....+...||+|.+|.-|++++-.--+          .+-||+||.+-..++....+
T Consensus        58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~----------~K~C~~CrTE~e~V~fT~~~  116 (493)
T COG5236          58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM----------QKGCPLCRTETEAVVFTASS  116 (493)
T ss_pred             ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh----------ccCCCccccccceEEEecCC
Confidence            346789999999999999999999999999998854422          22499999887776655543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.46  E-value=0.00076  Score=47.60  Aligned_cols=47  Identities=23%  Similarity=0.508  Sum_probs=39.6

Q ss_pred             CCCCCc-cccceeeecCCCCccccccccccccCccccCCCCC-CCCCCCCCchhhcccc
Q 010335          365 PCPLCR-HGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKNR  421 (513)
Q Consensus       365 ~Cp~Cr-~~i~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~  421 (513)
                      -|.||. ++|.++....|+          +..|..|..+.-+ .-.+||+||++|++-+
T Consensus         9 ECTICye~pvdsVlYtCGH----------MCmCy~Cg~rl~~~~~g~CPiCRapi~dvI   57 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGH----------MCMCYACGLRLKKALHGCCPICRAPIKDVI   57 (62)
T ss_pred             ceeeeccCcchHHHHHcch----------HHhHHHHHHHHHHccCCcCcchhhHHHHHH
Confidence            499998 889999999994          3899999887766 5779999999998754

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.42  E-value=0.11  Score=48.65  Aligned_cols=51  Identities=20%  Similarity=0.206  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHcCC-CcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335          189 GYFDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       189 g~~eiv~~Ll~~Ga-dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  246 (513)
                      .+..++++.+++|- ++|..-..       ..+|.|-|.-|+++++.+++.+||++||-
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~-------~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQK-------VNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhc-------cCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            45778888888874 55544322       34699999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=95.29  E-value=0.014  Score=57.62  Aligned_cols=47  Identities=28%  Similarity=0.609  Sum_probs=32.3

Q ss_pred             cccchhhhcc---cceE--EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          317 ADTCAVCLER---ACTV--AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       317 ~~~C~iC~~~---~~~v--~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ...|.+|...   ....  ...+|||.+|..|...+-..           +..+||.|+..+.
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-----------~~~~CP~C~~~lr   54 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----------GSGSCPECDTPLR   54 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-----------CCCCCCCCCCccc
Confidence            4679999972   2221  22289999999999887533           1236999986654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.0042  Score=61.63  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=40.8

Q ss_pred             CCCCCCCccccceeeecCCCCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          363 SIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .+-|.||..+...++.||||         -|.+|..|+...+=-.+-||+||.+|+..
T Consensus       290 gkeCVIClse~rdt~vLPCR---------HLCLCs~Ca~~Lr~q~n~CPICRqpi~~l  338 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCR---------HLCLCSGCAKSLRYQTNNCPICRQPIEEL  338 (349)
T ss_pred             CCeeEEEecCCcceEEecch---------hhehhHhHHHHHHHhhcCCCccccchHhh
Confidence            55799999999999999994         26999999776663355699999999875

>TIGR00599 rad18 DNA repair protein rad18

Probab=94.99  E-value=0.015  Score=59.84  Aligned_cols=49  Identities=27%  Similarity=0.546  Sum_probs=39.5

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      .....|.||.+.....+..+|||.+|..|...+....            ..||+||..+..
T Consensus        24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~------------~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ------------PKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC------------CCCCCCCCcccc
Confidence            3457899999988887889999999999998765431            259999988754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.77  E-value=0.36  Score=43.89  Aligned_cols=71  Identities=11%  Similarity=-0.035  Sum_probs=51.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 010335           13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWE   92 (513)
Q Consensus        13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~e   92 (513)
                      -|..|++.+-+.++++.-+...+.     ....++.+-.|++..+.|+|+|+-++   +  .-.+-.+-+-.|...+..+
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qn---L--~i~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQN---L--HIYNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhc---c--CCCCchhhhhhhhhccchh
Confidence            477899999999999987754322     11127889999999999999999442   1  1122355677888888777


Q ss_pred             H
Q 010335           93 V   93 (513)
Q Consensus        93 i   93 (513)
                      +
T Consensus       119 L  119 (192)
T PF03158_consen  119 L  119 (192)
T ss_pred             H
Confidence            6

These proteins may be involved in promoting survival of infected macrophages [].

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.77  E-value=0.0063  Score=58.34  Aligned_cols=42  Identities=24%  Similarity=0.440  Sum_probs=37.5

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .|-||.+.....+.|++ |          .-+|+.|    |++++.|||||+.|.|-
T Consensus       302 LC~ICmDaP~DCvfLeCGH----------mVtCt~C----Gkrm~eCPICRqyi~rv  344 (350)
T KOG4275|consen  302 LCAICMDAPRDCVFLECGH----------MVTCTKC----GKRMNECPICRQYIVRV  344 (350)
T ss_pred             HHHHHhcCCcceEEeecCc----------EEeehhh----ccccccCchHHHHHHHH
Confidence            59999999999999998 4          3789999    99999999999999874

>smart00504 Ubox Modified RING finger domain

Probab=93.84  E-value=0.05  Score=40.57  Aligned_cols=44  Identities=11%  Similarity=0.038  Sum_probs=35.9

Q ss_pred             cchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          319 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       319 ~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .|.||.+...+-+..+|||.+|.+|...+....            ..||+|+..+.
T Consensus         3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~------------~~cP~~~~~~~   46 (63)
T smart00504        3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLSH------------GTDPVTGQPLT   46 (63)
T ss_pred             CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC------------CCCCCCcCCCC
Confidence            588899887777888999999999998887541            25999998763

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=93.61  E-value=0.035  Score=55.08  Aligned_cols=49  Identities=22%  Similarity=0.626  Sum_probs=38.0

Q ss_pred             cccccchhhhcc-cce------------EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          315 DDADTCAVCLER-ACT------------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       315 ~~~~~C~iC~~~-~~~------------v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      .....|.||+|. .-+            -.-.||||-+-.+|...++.+..            .|||||.+++-
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ------------TCPICr~p~if  346 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ------------TCPICRRPVIF  346 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc------------CCCcccCcccc
Confidence            456899999986 211            26679999999999999987643            49999999553

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=93.61  E-value=0.027  Score=51.72  Aligned_cols=52  Identities=13%  Similarity=0.411  Sum_probs=39.5

Q ss_pred             CCCCCCCccccceeeecCC-CCccccccccccccCccccCCC----------------CCCCCCCCCCchhhcccccccc
Q 010335          363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHT----------------RDAECESPACAPEIRKNRVALV  425 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  425 (513)
                      ...||||.+.+..-+..++ |           .||..|...-                .+....||+||.+|...-+.++
T Consensus        18 ~~~CpICld~~~dPVvT~CGH-----------~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi   86 (193)
T PLN03208         18 DFDCNICLDQVRDPVVTLCGH-----------LFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI   86 (193)
T ss_pred             ccCCccCCCcCCCcEEcCCCc-----------hhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence            4469999999888877777 8           9999998531                1124589999999988655444

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.51  E-value=0.019  Score=55.34  Aligned_cols=55  Identities=22%  Similarity=0.459  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccccc
Q 010335          359 GPPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVAL  424 (513)
Q Consensus       359 ~~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      .|+....|.+|......-...|| |           -||-+|..+--+.-.+||+||.++..+.++-
T Consensus       235 i~~a~~kC~LCLe~~~~pSaTpCGH-----------iFCWsCI~~w~~ek~eCPlCR~~~~pskvi~  290 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRSNPSATPCGH-----------IFCWSCILEWCSEKAECPLCREKFQPSKVIC  290 (293)
T ss_pred             CCCCCCceEEEecCCCCCCcCcCcc-----------hHHHHHHHHHHccccCCCcccccCCCcceee
Confidence            34444579999999999999999 9           9999999888777778999999998886653

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.29  E-value=0.56  Score=43.99  Aligned_cols=115  Identities=12%  Similarity=0.126  Sum_probs=81.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCChHHHHHHHc
Q 010335           13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY----CGQTALMQACRY   88 (513)
Q Consensus        13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~----~g~TpLh~A~~~   88 (513)
                      .|-.|+..-|++.+..+....-+.         .++|-+|..++.-+++.+|+.+ ..+..+|-    .+.--+.|+...
T Consensus       156 sledAV~AsN~~~i~~~VtdKkdA---------~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKDA---------HQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHHH---------HHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhh
Confidence            367788888888888877644222         6889999999999999999975 22222221    133345555443


Q ss_pred             --CCHHHHHHHHhcCC-CCCcc--cCCCCCcHHHHHHHcCCHHHHHHHHHccCC
Q 010335           89 --GHWEVVQTLLLFRC-NVTRA--DYLSGRTALHFAAVNGHVRCIRLVVADFVP  137 (513)
Q Consensus        89 --g~~eiVk~LL~~ga-~~~~~--~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~  137 (513)
                        .+..++++++..|- +++..  .-+.|.|-|.-|+.+++.+++.+|+.+|+.
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence              36778899998873 44422  223799999999999999999999988763

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=93.28  E-value=0.054  Score=51.98  Aligned_cols=54  Identities=28%  Similarity=0.565  Sum_probs=39.6

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      +....|.||-++...-...+|||.+|.-|...-..+            +..||+||.+.. ++.+++
T Consensus        23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~------------qp~CP~Cr~~~~-esrlr~   76 (391)
T COG5432          23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT------------QPFCPVCREDPC-ESRLRG   76 (391)
T ss_pred             hhHHHhhhhhheeecceecccccchhHHHHHHHhcC------------CCCCccccccHH-hhhccc
Confidence            345789999999999999999999988777554322            346999996643 233444

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.92  E-value=0.058  Score=54.21  Aligned_cols=46  Identities=33%  Similarity=0.675  Sum_probs=33.5

Q ss_pred             ccchhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          318 DTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       318 ~~C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      +.|.||+|..   --+..+||.|.+...|--.+....           ...||+|++.|-
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-----------r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-----------RTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-----------CccCCCCCCcCC
Confidence            5999999854   456889999998777775554332           125999998543

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=92.56  E-value=0.063  Score=38.51  Aligned_cols=46  Identities=20%  Similarity=0.507  Sum_probs=34.1

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .....|..|......-...||||..|..|-    ..++.+.          ||+|-.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f----~~~rYng----------CPfC~~~~~   50 (55)
T PF14447_consen    5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCF----PGERYNG----------CPFCGTPFE   50 (55)
T ss_pred             ccceeEEEccccccccccccccceeecccc----ChhhccC----------CCCCCCccc
Confidence            345677788887777788899999998876    3333333          999998765

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.17  E-value=0.08  Score=51.31  Aligned_cols=47  Identities=28%  Similarity=0.586  Sum_probs=35.7

Q ss_pred             ccccchhhhcccc---eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          316 DADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       316 ~~~~C~iC~~~~~---~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      ....|.||+....   -+.+.||.|++...|.-.+-..-           +..||+||.+|
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y-----------~~~CPvCrt~i  371 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY-----------SNKCPVCRTAI  371 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh-----------cccCCccCCCC
Confidence            3478999997553   35888999999999987775431           23699999775

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.10  E-value=0.28  Score=38.27  Aligned_cols=49  Identities=31%  Similarity=0.339  Sum_probs=34.1

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN   67 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~   67 (513)
                      +.+.|..|+..|+.|+++.+++.+ ...        ...|..|+..-+.++++||+++
T Consensus         6 t~~tl~~Ai~GGN~eII~~c~~~~-~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    6 TKKTLEYAIIGGNFEIINICLKKN-KPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHh-ccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            456677788888888888777654 111        3467777777778888887775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=91.90  E-value=0.013  Score=40.52  Aligned_cols=39  Identities=23%  Similarity=0.550  Sum_probs=31.0

Q ss_pred             CCCCCccccc---eeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCc
Q 010335          365 PCPLCRHGIV---SFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACA  414 (513)
Q Consensus       365 ~Cp~Cr~~i~---~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~  414 (513)
                      .||||...+.   .++.+++ +           .||..|....-+....||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H-----------~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGH-----------VFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSE-----------EEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCC-----------eeCHHHHHHHHHhCCcCCccC
Confidence            4999999884   6777877 7           899999877666677999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=91.81  E-value=0.063  Score=51.41  Aligned_cols=44  Identities=18%  Similarity=0.464  Sum_probs=33.8

Q ss_pred             CCCCCCccccce-------eeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhc
Q 010335          364 IPCPLCRHGIVS-------FTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIR  418 (513)
Q Consensus       364 ~~Cp~Cr~~i~~-------~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~  418 (513)
                      ..||+|...+..       +..+ +| |           .||..|...-.+....||+||.++.
T Consensus       175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H-----------~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        175 KECAICMEKVYDKEIKNMYFGILSNCNH-----------VFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCccCCcccccCccccccceecCCCCC-----------cccHHHHHHHHhcCCCCCCCCCEee
Confidence            359999987653       2233 34 8           9999999877777889999998876

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=91.65  E-value=0.099  Score=51.38  Aligned_cols=48  Identities=27%  Similarity=0.582  Sum_probs=38.4

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      +..-.|.||.+-+......||+|.+|--|.-.+...            ...||.|+.++.
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~------------~p~CP~C~~~~~   68 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY------------KPQCPTCCVTVT   68 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc------------CCCCCceecccc
Confidence            456789999999998899999999998887666533            236999997764

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.48  E-value=0.092  Score=50.98  Aligned_cols=52  Identities=21%  Similarity=0.452  Sum_probs=37.4

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  377 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~  377 (513)
                      ....+|.||....---+..+|+|++|.-|..-.-..           +-..|++||.+|.+-.
T Consensus         5 ~~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-----------dk~~CavCR~pids~i   56 (324)
T KOG0824|consen    5 TKKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-----------DKKTCAVCRFPIDSTI   56 (324)
T ss_pred             ccCCcceeeeccCCcCccccccchhhhhhhcchhhc-----------CCCCCceecCCCCcch
Confidence            346789999987665588899999998776332211           2234999999998643

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.46  E-value=0.096  Score=52.15  Aligned_cols=46  Identities=30%  Similarity=0.718  Sum_probs=37.9

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcc
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH  371 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~  371 (513)
                      ..+.-.|.||++....-...+|||.+|..|...+..            ....||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~------------~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE------------GPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcC------------CCcCCcccCC
Confidence            346788999999888779999999999999977754            1247999994

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=91.24  E-value=0.095  Score=36.15  Aligned_cols=39  Identities=15%  Similarity=0.426  Sum_probs=29.8

Q ss_pred             CCCCcccc---ceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCch
Q 010335          366 CPLCRHGI---VSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAP  415 (513)
Q Consensus       366 Cp~Cr~~i---~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~  415 (513)
                      |++|....   ..+..+++ |           .+|..|.....+....||+||+
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH-----------~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGH-----------IFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCC-----------HHHHHHHHhhcCCCCCCcCCCC
Confidence            88888777   34455555 8           8999998777666789999974

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=91.07  E-value=0.058  Score=58.85  Aligned_cols=47  Identities=26%  Similarity=0.569  Sum_probs=40.1

Q ss_pred             ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      ..-.|.+|..++-+++..-|||.||..|....-.++           .-.||.|-..+
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR-----------qRKCP~Cn~aF  688 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR-----------QRKCPKCNAAF  688 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh-----------cCCCCCCCCCC
Confidence            467899999999999999999999999998776663           34699998764

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=90.79  E-value=0.063  Score=36.44  Aligned_cols=41  Identities=22%  Similarity=0.498  Sum_probs=29.4

Q ss_pred             CCCCccccceeeecC-C-CCccccccccccccCccccCCCCCC-CCCCCCCchhh
Q 010335          366 CPLCRHGIVSFTKLP-G-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEI  417 (513)
Q Consensus       366 Cp~Cr~~i~~~~~~~-~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~  417 (513)
                      |++|...+...+.++ + +           .+|..|.....+. ...||.||.++
T Consensus         2 C~iC~~~~~~~~~~~~C~H-----------~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           2 CPICLEEFREPVVLLPCGH-----------VFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCcCchhhhCceEecCCCC-----------hhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            999999884443343 4 7           8999997655443 56799998764

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=90.76  E-value=0.24  Score=39.22  Aligned_cols=38  Identities=29%  Similarity=0.658  Sum_probs=28.8

Q ss_pred             cceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          327 ACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       327 ~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      .+.++.-.|+|.+..+|.+....+...         ...||.||+..
T Consensus        44 ~Cplv~g~C~H~FH~hCI~kWl~~~~~---------~~~CPmCR~~w   81 (85)
T PF12861_consen   44 DCPLVWGKCSHNFHMHCILKWLSTQSS---------KGQCPMCRQPW   81 (85)
T ss_pred             CCceeeccCccHHHHHHHHHHHccccC---------CCCCCCcCCee
Confidence            456677789999999999988765321         23699999875

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.22  E-value=0.047  Score=48.96  Aligned_cols=45  Identities=20%  Similarity=0.581  Sum_probs=37.6

Q ss_pred             CCCCCccccceee---ecCCCCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVSFT---KLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~---~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .||+|...+..-+   .=+||           -||-.|+.+-.+.-..||+|+++|...
T Consensus       133 ~CPiCl~~~sek~~vsTkCGH-----------vFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  133 KCPICLDSVSEKVPVSTKCGH-----------VFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             CCCceecchhhccccccccch-----------hHHHHHHHHHHHhCCCCCCcccccchh
Confidence            5999998777654   44679           999999999888999999999887664

>TIGR00599 rad18 DNA repair protein rad18

Probab=89.67  E-value=0.11  Score=53.48  Aligned_cols=46  Identities=17%  Similarity=0.409  Sum_probs=37.2

Q ss_pred             CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335          363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK  419 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~  419 (513)
                      ...||||...+..-+.+|| |           .||..|..+.-.....||.||.++..
T Consensus        26 ~l~C~IC~d~~~~PvitpCgH-----------~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        26 SLRCHICKDFFDVPVLTSCSH-----------TFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             ccCCCcCchhhhCccCCCCCC-----------chhHHHHHHHHhCCCCCCCCCCcccc
Confidence            4579999998887777787 8           99999987654445589999998876

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=88.98  E-value=0.044  Score=36.70  Aligned_cols=37  Identities=22%  Similarity=0.653  Sum_probs=27.8

Q ss_pred             CCCCcccccee-eecCC-CCccccccccccccCccccCCCCCCCCCCCCC
Q 010335          366 CPLCRHGIVSF-TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPAC  413 (513)
Q Consensus       366 Cp~Cr~~i~~~-~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~  413 (513)
                      ||||.+.+..- +.+++ |           .||..|....-+....||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH-----------~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGH-----------SFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSE-----------EEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCC-----------chhHHHHHHHHHCcCCCcCC
Confidence            79999888887 56666 8           89999987765556788887

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.77  E-value=0.18  Score=50.34  Aligned_cols=64  Identities=28%  Similarity=0.647  Sum_probs=46.7

Q ss_pred             ccchhhhcccceE------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCcccccccc
Q 010335          318 DTCAVCLERACTV------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPL  391 (513)
Q Consensus       318 ~~C~iC~~~~~~v------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~  391 (513)
                      ..|.||-+.....      ....|||.+|..|+-.+...           ..+.||+||...    .++...++.|.++.
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-----------~~i~cpfcR~~~----~~~~~~~~~l~kNf   68 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-----------SRILCPFCRETT----EIPDGDVKSLQKNF   68 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcC-----------ceeeccCCCCcc----cCCchhHhhhhhhH
Confidence            4566776543332      44459999999999888755           456799999886    77777777788877


Q ss_pred             ccccC
Q 010335          392 SLGLC  396 (513)
Q Consensus       392 ~~~~c  396 (513)
                      ++.-.
T Consensus        69 ~ll~~   73 (296)
T KOG4185|consen   69 ALLQA   73 (296)
T ss_pred             HHHHH
Confidence            76654

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.76  E-value=0.23  Score=49.12  Aligned_cols=55  Identities=15%  Similarity=0.451  Sum_probs=44.1

Q ss_pred             CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          313 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       313 s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      ...+.+.|.||..++.+.++.||+|.-|..|..+-.-.            .+.|-+|+..|......
T Consensus       418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN------------~k~CFfCktTv~~~~ld  472 (489)
T KOG4692|consen  418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN------------CKRCFFCKTTVIDVILD  472 (489)
T ss_pred             CCcccccCcceecccchhhccCCCCchHHHHHHHHHhc------------CCeeeEecceeeehhcc
Confidence            34577899999999999999999999999998665322            23699999988874443

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.72  E-value=0.22  Score=51.37  Aligned_cols=51  Identities=25%  Similarity=0.625  Sum_probs=38.5

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  377 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~  377 (513)
                      ...-.|.||.+..-..+-.||||.+|..|..+....            ...||.||+++..+.
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~------------~~~cp~Cr~~l~e~~  132 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ------------ETECPLCRDELVELP  132 (398)
T ss_pred             cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc------------CCCCcccccccccch
Confidence            345789999987777777799999999997663221            225999999988643

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.64  E-value=0.77  Score=35.73  Aligned_cols=47  Identities=21%  Similarity=0.271  Sum_probs=23.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc
Q 010335           47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF  100 (513)
Q Consensus        47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~  100 (513)
                      .-|..|+..|+.||++.+++.+ .++      ...|..|+..-+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3455555555555555555433 111      2345555555555555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=87.23  E-value=0.78  Score=40.58  Aligned_cols=19  Identities=32%  Similarity=0.812  Sum_probs=16.2

Q ss_pred             CCCCCCCccccceeeecCC
Q 010335          363 SIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      ...||+||..|.+|+.+-.
T Consensus        80 ~L~CPLCRG~V~GWtvve~   98 (162)
T PF07800_consen   80 ELACPLCRGEVKGWTVVEP   98 (162)
T ss_pred             cccCccccCceeceEEchH
Confidence            4579999999999988754

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=87.22  E-value=0.25  Score=48.89  Aligned_cols=47  Identities=26%  Similarity=0.592  Sum_probs=34.1

Q ss_pred             CCCCCccccc--e----eeecCCCCccccccccccccCccccCCC-CCCCCCCCCCchhhccccc
Q 010335          365 PCPLCRHGIV--S----FTKLPGSPVKDIKQPLSLGLCTPCMLHT-RDAECESPACAPEIRKNRV  422 (513)
Q Consensus       365 ~Cp~Cr~~i~--~----~~~~~~~~~~~~~~~~~~~~c~~c~~~~-~~~~~~~~~~~~~~~~~~~  422 (513)
                      .||+|.....  .    ++.-+||           .+|..|.... .....+||.|+.+++++.+
T Consensus         5 ~CP~Ck~~~y~np~~kl~i~~CGH-----------~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f   58 (309)
T TIGR00570         5 GCPRCKTTKYRNPSLKLMVNVCGH-----------TLCESCVDLLFVRGSGSCPECDTPLRKNNF   58 (309)
T ss_pred             CCCcCCCCCccCcccccccCCCCC-----------cccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence            4999997422  1    2233558           9999998774 3456799999999999763

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.93  E-value=0.29  Score=46.00  Aligned_cols=50  Identities=30%  Similarity=0.588  Sum_probs=40.1

Q ss_pred             CCCCCcccccee-eecCCCCccccccccccccCcccc---CCCCCCCCCCCCCchhhcccccccc
Q 010335          365 PCPLCRHGIVSF-TKLPGSPVKDIKQPLSLGLCTPCM---LHTRDAECESPACAPEIRKNRVALV  425 (513)
Q Consensus       365 ~Cp~Cr~~i~~~-~~~~~~~~~~~~~~~~~~~c~~c~---~~~~~~~~~~~~~~~~~~~~~~~~~  425 (513)
                      .|=||.+....= +.++||           .||-+|.   ++.+...+.||.||.+|....|.++
T Consensus        49 dCNICLd~akdPVvTlCGH-----------LFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl  102 (230)
T KOG0823|consen   49 DCNICLDLAKDPVVTLCGH-----------LFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL  102 (230)
T ss_pred             eeeeeccccCCCEEeeccc-----------ceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence            488888666554 556669           9999997   5666678899999999999888776

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=85.74  E-value=0.15  Score=34.78  Aligned_cols=37  Identities=24%  Similarity=0.670  Sum_probs=25.9

Q ss_pred             CCCCccccceeeecCC-CCccccccccccccCccccCCCCCC----CCCCCCC
Q 010335          366 CPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA----ECESPAC  413 (513)
Q Consensus       366 Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~----~~~~~~~  413 (513)
                      ||||.+-+..=+.|++ |           .||..|.....+.    ...||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH-----------~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGH-----------SFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSS-----------EEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcC-----------HHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999999999998 8           9999998665432    1468876

>smart00184 RING Ring finger

Probab=84.54  E-value=0.22  Score=32.32  Aligned_cols=37  Identities=24%  Similarity=0.667  Sum_probs=27.5

Q ss_pred             CCCCccccceeeecCC-CCccccccccccccCccccCCCCC-CCCCCCCC
Q 010335          366 CPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD-AECESPAC  413 (513)
Q Consensus       366 Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~  413 (513)
                      ||+|.......+.+|+ +           .+|..|....-+ ....||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H-----------~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGH-----------TFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCC-----------hHHHHHHHHHHHhCcCCCCCC
Confidence            7899988888888887 7           789999654433 34567776

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.49  E-value=0.39  Score=52.33  Aligned_cols=44  Identities=25%  Similarity=0.591  Sum_probs=38.0

Q ss_pred             ccccchhhhcccce-----EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcc
Q 010335          316 DADTCAVCLERACT-----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH  371 (513)
Q Consensus       316 ~~~~C~iC~~~~~~-----v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~  371 (513)
                      ..+.|.||.|....     ....+|||.++..|...+....+            .||+||.
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q------------tCP~CR~  338 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ------------TCPTCRT  338 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC------------cCCcchh
Confidence            47899999998777     68889999999999999986643            3999998

>smart00504 Ubox Modified RING finger domain

Probab=84.40  E-value=0.28  Score=36.44  Aligned_cols=45  Identities=11%  Similarity=0.144  Sum_probs=35.2

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .||+|...+..=+.+|+ +           .+|..|....-+....||+|+.++...
T Consensus         3 ~Cpi~~~~~~~Pv~~~~G~-----------v~~~~~i~~~~~~~~~cP~~~~~~~~~   48 (63)
T smart00504        3 LCPISLEVMKDPVILPSGQ-----------TYERRAIEKWLLSHGTDPVTGQPLTHE   48 (63)
T ss_pred             CCcCCCCcCCCCEECCCCC-----------EEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence            59999998888777775 6           888888776544467899999887554

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.27  E-value=0.66  Score=43.67  Aligned_cols=41  Identities=24%  Similarity=0.496  Sum_probs=33.8

Q ss_pred             CCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          366 CPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       366 Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      |-.|+..-..+..+|+ |          |.+|.+|    ......||+|+.++..+
T Consensus       161 Cr~C~~~~~~VlllPCrH----------l~lC~~C----~~~~~~CPiC~~~~~s~  202 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRH----------LCLCGIC----DESLRICPICRSPKTSS  202 (207)
T ss_pred             ceecCcCCceEEeecccc----------eEecccc----cccCccCCCCcChhhce
Confidence            9999999999999999 4          6899999    33366799999877644

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=83.69  E-value=0.52  Score=44.67  Aligned_cols=47  Identities=28%  Similarity=0.655  Sum_probs=31.9

Q ss_pred             ccchhhhcccc--eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeee
Q 010335          318 DTCAVCLERAC--TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK  378 (513)
Q Consensus       318 ~~C~iC~~~~~--~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~  378 (513)
                      ..|..|.....  ..+...|+|.+|..|.-.-           .|+   .||+|+..|-.+.-
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-----------~~~---~C~lCkk~ir~i~l   52 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-----------SPD---VCPLCKKSIRIIQL   52 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccC-----------Ccc---ccccccceeeeeec
Confidence            45777775544  4488999999999998111           111   69999999544433

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.26  E-value=0.15  Score=34.35  Aligned_cols=37  Identities=24%  Similarity=0.682  Sum_probs=29.4

Q ss_pred             CCCCccccceee-ecCC-CCccccccccccccCccccCCCCC--CCCCCCCC
Q 010335          366 CPLCRHGIVSFT-KLPG-SPVKDIKQPLSLGLCTPCMLHTRD--AECESPAC  413 (513)
Q Consensus       366 Cp~Cr~~i~~~~-~~~~-~~~~~~~~~~~~~~c~~c~~~~~~--~~~~~~~~  413 (513)
                      ||+|........ .+++ |           .||..|.....+  ....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H-----------~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGH-----------SFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSE-----------EEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCC-----------cchHHHHHHHHHhcCCccCCcC
Confidence            789998888887 7777 8           899999876654  46678876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=81.96  E-value=0.54  Score=51.34  Aligned_cols=87  Identities=18%  Similarity=0.393  Sum_probs=58.2

Q ss_pred             ccccchhhhcccceE---EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC---------C
Q 010335          316 DADTCAVCLERACTV---AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS---------P  383 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v---~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~---------~  383 (513)
                      ....|.+|+....+-   .-.+|+|.+|..|.-.++....            .||+||..+..++.+-..         |
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq------------TCPiDR~EF~~v~V~eS~~~~~~vR~lP  189 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ------------TCPVDRGEFGEVKVLESTGIEANVRCLP  189 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc------------cCchhhhhhheeeeeccccccceeEecc
Confidence            457788888766544   5579999999999998876543            499999988877666551         2


Q ss_pred             cccccccc----------------ccccCccccCCCCC-CCCCCCCCc
Q 010335          384 VKDIKQPL----------------SLGLCTPCMLHTRD-AECESPACA  414 (513)
Q Consensus       384 ~~~~~~~~----------------~~~~c~~c~~~~~~-~~~~~~~~~  414 (513)
                      +.|-++++                ...-|-.|..+-.+ .+.-|-.|-
T Consensus       190 ~EEs~~~~e~~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN  237 (1134)
T KOG0825|consen  190 SEESENILEKGGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCN  237 (1134)
T ss_pred             hhhhhhhhhhccccccccccCcccccccceeeccCChHHhheeecccc
Confidence            22222222                23567777655544 566777774

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.71  E-value=1.6  Score=42.15  Aligned_cols=55  Identities=24%  Similarity=0.516  Sum_probs=38.7

Q ss_pred             CccccccchhhhcccceEE-eeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335          313 SSDDADTCAVCLERACTVA-AEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  377 (513)
Q Consensus       313 s~~~~~~C~iC~~~~~~v~-~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~  377 (513)
                      ..+...+|.+|.+.+..-+ ..+|||..|.-|.-.-+..+          -+-.||.|-..+..+.
T Consensus       235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~----------asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD----------ASFTCPLCGENVEPLQ  290 (298)
T ss_pred             cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch----------hhcccCccCCCCcchh
Confidence            4456789999999887664 44599999999984444321          1235999997766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	513
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-16
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-16
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-07
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-16
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-16
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-15
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-15
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-15
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-14
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-08
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-14
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-14
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-11
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-14
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-14
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-12
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-14
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-14
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-13
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-13
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-13
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-11
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-13
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-06
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-12
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-10
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		7e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-11
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		5e-11
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-11
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-11
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		9e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-10
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-10
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		6e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-08
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-05
1uoh_A	226	Human Gankyrin Length = 226		1e-07
1uoh_A	226	Human Gankyrin Length = 226		2e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-05
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		9e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		7e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		7e-07
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		9e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		7e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		9e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		7e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		9e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		7e-06
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		8e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		9e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		4e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		5e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		6e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		8e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 80/156 (51%), Gaps = 34/156 (21%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           +PLH AA  GH E+V LLLE GADVN+++  G+T L  A R GH EVV+ LL    +V  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
            D  +GRT LH AA NGH+  ++L+                          +++  D   
Sbjct: 64  KDK-NGRTPLHLAARNGHLEVVKLL--------------------------LEAGAD--- 93
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 202
               VN     G T LH+AA NG+ + V+LLL+  A
Sbjct: 94  ----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 43/151 (28%)
Query: 111 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170
           +GRT LH AA NGH+  ++L+                          +++  D       
Sbjct: 1   NGRTPLHLAARNGHLEVVKLL--------------------------LEAGAD------- 27
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA 
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            G+L+  ++LL  GA   + + NG  PL +A
Sbjct: 78  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +    T+G  ++PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDTYG--DTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ ++ G T L  A + GH E+V+ LL +  +V  AD   G T LH AA  GH+  + +
Sbjct: 73  VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G T L  A R GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D+ SG T LH AA  GH+  + ++                          +K   D 
Sbjct: 74  NALDF-SGSTPLHLAAKRGHLEIVEVL--------------------------LKYGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     G T LH+AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G T LH+AA  G+ + V++LL   A+V+A+ F          +GSTPLH AA 
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF----------SGSTPLHLAAK 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            G+L+  +VLL  GA   + +  G  PL +A
Sbjct: 90  RGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 8   SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
           S  G+RL+ AA +G+    K L++    +    + G   +PLH+AA +GH EIV LL+  
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHYAAKEGHKEIVKLLISK 59
Query: 68  GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
           GADVN+++  G+T L  A + GH E+V+ L+    +V   D   GRT LH+AA  GH   
Sbjct: 60  GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEI 118
Query: 128 IRLVVA 133
           ++L+++
Sbjct: 119 VKLLIS 124

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 77/222 (34%)
Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
           AA  G+ + V  L+ENGADVN+ +                                    
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDS----------------------------------D 36
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           GRT LH+AA  GH   ++L+++                     G+ V +K          
Sbjct: 37  GRTPLHYAAKEGHKEIVKLLISK--------------------GADVNAK---------- 66
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
                 G T LH AA  G+ + V+LL+   A+V+A              G TPLH+AA  
Sbjct: 67  ---DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD----------SDGRTPLHYAAKE 113
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           G+ +  ++L+S+GA   + + +G  PLD+AR  G   +  LL
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 116/264 (43%), Gaps = 43/264 (16%)
Query: 17  AARDGDFVEAKMLLD--CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
           AAR G     K+LL+   NP LA  +T G  ++PLH AA +GH E V  LLE  A     
Sbjct: 87  AARIGHTNMVKLLLENNANPNLA--TTAG--HTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 75  NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV-- 132
              G T L  A +YG   V + LLL R     A   +G T LH A  + ++  ++L++  
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAE-LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 133 --ADFVPS----VPFEV--MNTQIEGDRG---DGSSVKSKCDQSALSKFVNKAADGGITA 181
             +   P+     P  +     Q+E  R     G S  ++  Q             G+T 
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-------------GVTP 248
Query: 182 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 241
           LH+AA  G+ + V LLL   AN +      G       +G TPLH  A  G++    VL+
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGN-----LGNK-----SGLTPLHLVAQEGHVPVADVLI 298
Query: 242 SRGASRMSLNCNGWLPLDVARMWG 265
             G    +    G+ PL VA  +G
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYG 322

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 114 TALHFAAVNGHVRCIR-LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN 172
           T LH A+  GH+  ++ L+     P+V    + T +      G +  +K      +K   
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232
           KA D   T LH AA  G+ + V+LLL+ +AN +  T           AG TPLH AA  G
Sbjct: 76  KAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATT----------AGHTPLHIAAREG 124
Query: 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           +++    LL + AS+  +   G+ PL VA  +G+  +  LL
Sbjct: 125 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 8   SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
           S  G+RL+ AA +G+    K L++    +    + G   +PLH AA  GH E+V LL+  
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISK 59
Query: 68  GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
           GADVN+++  G+T L  A   GH EVV+ L+    +V   D   GRT LH AA NGH   
Sbjct: 60  GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEV 118
Query: 128 IRLVVA 133
           ++L+++
Sbjct: 119 VKLLIS 124

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 90/222 (40%), Gaps = 77/222 (34%)
Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
           AA  G+ + V  L+ENGADVN+ +                                    
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDS----------------------------------D 36
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           GRT LH AA NGH   ++L+++                     G+ V +K          
Sbjct: 37  GRTPLHHAAENGHKEVVKLLISK--------------------GADVNAK---------- 66
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
                 G T LH AA NG+ + V+LL+   A+V+A              G TPLH AA  
Sbjct: 67  ---DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD----------SDGRTPLHHAAEN 113
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           G+ +  ++L+S+GA   + + +G  PLD+AR  G   +  LL
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/126 (42%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 8   SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
           S  G+RL+ AA +G+    K LL+ N      S   G  +PLH+AA  GH EIV LLL  
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLE-NGADPNASDSDG-RTPLHYAAENGHKEIVKLLLSK 59
Query: 68  GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
           GAD N+++  G+T L  A   GH E+V+ LLL +     A    GRT LH+AA NGH   
Sbjct: 60  GADPNAKDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEI 118
Query: 128 IRLVVA 133
           ++L+++
Sbjct: 119 VKLLLS 124

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 91/222 (40%), Gaps = 77/222 (34%)
Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
           AA  G+ + V  LLENGAD N+ +                                    
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDS----------------------------------D 36
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           GRT LH+AA NGH   ++L+++                             D +A     
Sbjct: 37  GRTPLHYAAENGHKEIVKLLLS--------------------------KGADPNA----- 65
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
            K +DG  T LH AA NG+ + V+LLL   A+ +A              G TPLH+AA  
Sbjct: 66  -KDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKD----------SDGRTPLHYAAEN 113
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           G+ +  ++LLS+GA   + + +G  PLD+AR  G   +  LL
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           +PLH AA  GH E+V LLLE GADVN+++  G+T L  A R GH EVV+ LL    +V  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV 132
            D  +GRT LH AA NGH+  ++L++
Sbjct: 64  KDK-NGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 43/135 (31%)
Query: 111 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170
           +GRT LH AA NGH+  ++L++                          ++  D       
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL--------------------------EAGAD------- 27
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA 
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 231 GGNLKCCQVLLSRGA 245
            G+L+  ++LL  GA
Sbjct: 78  NGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA  G+L+  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVV 51
Query: 238 QVLLSRGASRMSLNCNGWLPLDVA 261
           ++LL  GA   + + NG  PL +A
Sbjct: 52  KLLLEAGADVNAKDKNGRTPLHLA 75

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N        F G  +PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNARDFTGW-TPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+++  G T L  A R GH E+V+ LL    +V  +D   G T LH AA  GH+  + +
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLEIVEV 131
Query: 131 VVAD 134
           ++ +
Sbjct: 132 LLKN 135

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+R++ G T L  A  +GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D L G T LH AA  GH+  + ++                          +K+  D 
Sbjct: 74  NAKDSL-GVTPLHLAARRGHLEIVEVL--------------------------LKNGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN +   G T LH+AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD----------SLGVTPLHLAAR 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 90  RGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+        Y  +G   +PLH AAA GH EIV +LL NGAD
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADANAYDHYG--RTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ +  G T L  A   GH E+V+ LL +  +V   D  +G T L+ AA  GH+  + +
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD-ATGITPLYLAAYWGHLEIVEV 119
Query: 131 VV 132
           ++
Sbjct: 120 LL 121

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGAD N+ ++ G+T L  A   GH E+V+ LL    +V
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D  +G T LH AA  GH+  + ++                          +K   D 
Sbjct: 62  NAVD-TNGTTPLHLAASLGHLEIVEVL--------------------------LKYGAD- 93
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     GIT L++AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 94  ------VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G T LHMAA  G+ + V++LL   A+V+AV  +          G+TPLH AA  G+L+  
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN----------GTTPLHLAASLGHLEIV 84
Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
           +VLL  GA   + +  G  PL +A  WG    +E LL   +D
Sbjct: 85  EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G   +PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAEDASGW--TPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ ++ G T L  A  +GH E+V+ LL    +V   D + G T LH AA+ GH+  + +
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND-MEGHTPLHLAAMFGHLEIVEV 131
Query: 131 VVAD 134
           ++ +
Sbjct: 132 LLKN 135

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G T L  A   GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D+ +G T L  AA+ GH+  + ++                          +K+  D 
Sbjct: 74  NAVDH-AGMTPLRLAALFGHLEIVEVL--------------------------LKNGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     G T LH+AA+ G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G T LH+AA NG+ + V++LL   A+V+AV            AG TPL  AA 
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------AGMTPLRLAAL 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   + +  G  PL +A M+G    +E LL   +D
Sbjct: 90  FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 8   SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
           S  G+RL+ AA +G+    K LL+    +    + G   +PLH AA  GH E+V LLL  
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDG--KTPLHLAAENGHKEVVKLLLSQ 59
Query: 68  GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
           GAD N+++  G+T L  A   GH EVV+ LLL +     A    G+T LH AA NGH   
Sbjct: 60  GADPNAKDSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHKEV 118
Query: 128 IRLVVA 133
           ++L+++
Sbjct: 119 VKLLLS 124

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 91/222 (40%), Gaps = 77/222 (34%)
Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
           AA  G+ + V  LLENGADVN+ +                                    
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDS----------------------------------D 36
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           G+T LH AA NGH   ++L+++                             D +A     
Sbjct: 37  GKTPLHLAAENGHKEVVKLLLS--------------------------QGADPNA----- 65
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
            K +DG  T LH+AA NG+ + V+LLL   A+ +A              G TPLH AA  
Sbjct: 66  -KDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKD----------SDGKTPLHLAAEN 113
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           G+ +  ++LLS+GA   + + +G  PLD+AR  G   +  LL
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G   +PLH AA KGH EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDDSG--KTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ +  G T L  A  YGH E+V+ LL    +V   D   G T LH AA  GH+  + +
Sbjct: 73  VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTY-GFTPLHLAADAGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G+T L  A   GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
             AD + G T LH AA+ GH+  + ++                          +K+  D 
Sbjct: 74  NAADKM-GDTPLHLAALYGHLEIVEVL--------------------------LKNGADV 106
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
           +A   +       G T LH+AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 107 NATDTY-------GFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 44/164 (26%)
Query: 82  LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
           L++A R G  + V+ L+    +V   D  SG+T LH AA+ GH+  + +++         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDD-SGKTPLHLAAIKGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
                            K   D       VN A   G T LH+AAL G+ + V++LL   
Sbjct: 68  -----------------KHGAD-------VNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
           A+V+A   +          G TPLH AA  G+L+  +VLL  GA
Sbjct: 104 ADVNATDTY----------GFTPLHLAADAGHLEIVEVLLKYGA 137

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   D G T LH+AA+ G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD----------KMGDTPLHLAAL 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            G+L+  +VLL  GA   + +  G+ PL +A
Sbjct: 90  YGHLEIVEVLLKNGADVNATDTYGFTPLHLA 120

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G  ++PLH AA  GH EIV +LL+ GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDWLG--HTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ +  G T L  A   GH E+V+ LL    +V   DY  G T LH AA +GH+  + +
Sbjct: 73  VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY-EGFTPLHLAAYDGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ ++ G T L  A + GH E+V+ LL +  +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D   G T LH AA NGH+  + +++                      G+ V +K  +
Sbjct: 74  NAWDNY-GATPLHLAADNGHLEIVEVLLK--------------------HGADVNAKDYE 112
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                        G T LH+AA +G+ + V++LL   A+V+A      T+ D+
Sbjct: 113 -------------GFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 44/164 (26%)
Query: 82  LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
           L++A R G  + V+ L+    +V   D+L G T LH AA  GH+  + +++         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWL-GHTPLHLAAKTGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
                            K   D +A   +       G T LH+AA NG+ + V++LL   
Sbjct: 68  -----------------KYGADVNAWDNY-------GATPLHLAADNGHLEIVEVLLKHG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
           A+V+A  +           G TPLH AA  G+L+  +VLL  GA
Sbjct: 104 ADVNAKDYE----------GFTPLHLAAYDGHLEIVEVLLKYGA 137

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G T LH+AA  G+ + V++LL   A+V+A   +          G+TPLH AA  G+L+  
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY----------GATPLHLAADNGHLEIV 96
Query: 238 QVLLSRGASRMSLNCNGWLPLDVA 261
           +VLL  GA   + +  G+ PL +A
Sbjct: 97  EVLLKHGADVNAKDYEGFTPLHLA 120

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +  +   G  ++PLH AA  GH EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAHDDQG--STPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+R+  G T L  A   GH E+V+ LL +  +V   D   G T LH AA  GH+  + +
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY-GLTPLHLAADRGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G T L  A   GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D   G T LH AA NGH+  + ++                          +K   D 
Sbjct: 74  NARD-TDGWTPLHLAADNGHLEIVEVL--------------------------LKYGADV 106
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
           +A   +       G+T LH+AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 107 NAQDAY-------GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 44/164 (26%)
Query: 82  LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
           L++A R G  + V+ L+    +V   D   G T LH AA  GH   + +++         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
                            K   D       VN     G T LH+AA NG+ + V++LL   
Sbjct: 68  -----------------KHGAD-------VNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
           A+V+A   +          G TPLH AA  G+L+  +VLL  GA
Sbjct: 104 ADVNAQDAY----------GLTPLHLAADRGHLEIVEVLLKHGA 137

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   D G T LH+AA  G+ + V++LL   A+V+A         D    G TPLH AA 
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA------RDTD----GWTPLHLAAD 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            G+L+  +VLL  GA   + +  G  PL +A
Sbjct: 90  NGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N      +   GL +PLH AA  GH EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ +  G T L  A   GH E+V+ LL    +V   D   G T LH AA+ GH+  + +
Sbjct: 73  VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G T L  A  YGH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D + G T LH AA+ GH+  + ++                          +K   D 
Sbjct: 74  NAIDIM-GSTPLHLAALIGHLEIVEVL--------------------------LKHGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     G T LH+AA+ G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G+T LH+AA  G+ + V++LL   A+V+A+        D++G  STPLH AA 
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--------DIMG--STPLHLAAL 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   +++  G  PL +A + G    +E LL   +D
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N      +   GL +PLH AA  GH EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ +  G T L  A   GH E+V+ LL    +V   D   G T LH AA+ GH+  + +
Sbjct: 73  VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G T L  A  YGH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D + G T LH AA+ GH+  + ++                          +K   D 
Sbjct: 74  NAID-IXGSTPLHLAALIGHLEIVEVL--------------------------LKHGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     G T LH+AA+ G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G+T LH+AA  G+ + V++LL   A+V+A+             GSTPLH AA 
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------XGSTPLHLAAL 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   +++  G  PL +A + G    +E LL   +D
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 11/126 (8%)
Query: 11  GERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLE 66
           G++L+ AAR G   E ++L+    D N      +T     +PLH AA+ GH EIV +LL+
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVN------ATDNDGYTPLHLAASNGHLEIVEVLLK 68
Query: 67  NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126
           NGADVN+ +  G T L  A   GH E+V+ LL    +V   D   G T LH AA  GH+ 
Sbjct: 69  NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLE 127
Query: 127 CIRLVV 132
            + +++
Sbjct: 128 IVEVLL 133

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G T L  A   GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
             +D L+G T LH AA  GH+  + ++                          +K   D 
Sbjct: 74  NASD-LTGITPLHLAAATGHLEIVEVL--------------------------LKHGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN   + G T LH+AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   + G T LH+AA NG+ + V++LL   A+V+A         DL G   TPLH AA 
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA--------SDLTGI--TPLHLAAA 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   + + +G  PL +A  +G    +E LL   +D
Sbjct: 90  TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G   +PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ +  G T L  A  +GH E+V+ LL    +V   D  +G T LH AA  GH+  + +
Sbjct: 73  VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDD-NGITPLHLAANRGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G T L  A  +GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D L G T LH AA  GH+  + ++                          +K+  D 
Sbjct: 74  NAYDTL-GSTPLHLAAHFGHLEIVEVL--------------------------LKNGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN   D GIT LH+AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN A   G T LH+AA  G+ + V++LL   A+V+A    Y T       GSTPLH AA 
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDT------LGSTPLHLAAH 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            G+L+  +VLL  GA   + + NG  PL +A
Sbjct: 90  FGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N          GL +PLH AA  GH EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILI-ANGADVNAVDNTGL-TPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           V++ +  G T L  A   GH E+V+ LL +  +V   D ++G T LH AA  GH+  + +
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLEIVEV 131
Query: 131 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
           ++   AD      F      I  D G+    KS
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAKS 164

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G T L  A   GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
             AD + G T LH AA+ GH+  + ++                          +K   D 
Sbjct: 74  DAAD-VYGFTPLHLAAMTGHLEIVEVL--------------------------LKYGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     G T LH+AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 44/164 (26%)
Query: 82  LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
           L++A R G  + V+ L+    +V   D  +G T LH AAV+GH+  + +++         
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDN-TGLTPLHLAAVSGHLEIVEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
                            K   D  A   +       G T LH+AA+ G+ + V++LL   
Sbjct: 68  -----------------KHGADVDAADVY-------GFTPLHLAAMTGHLEIVEVLLKYG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
           A+V+A              GSTPLH AA  G+L+  +VLL  GA
Sbjct: 104 ADVNAFDM----------TGSTPLHLAADEGHLEIVEVLLKYGA 137

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   + G+T LH+AA++G+ + V++LL   A+V A   +          G TPLH AA 
Sbjct: 40  VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY----------GFTPLHLAAM 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            G+L+  +VLL  GA   + +  G  PL +A
Sbjct: 90  TGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G   +PLH AA +GH EIV +LL+ GAD
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+++  G T L  A R GH E+V+ LL    +V   D   G T LH AA  GH+  + +
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 131 VV 132
           ++
Sbjct: 120 LL 121

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+++  G T L  A R GH E+V+ LL    +V
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D   G T LH AA  GH+  + ++                          +K+  D 
Sbjct: 62  NAKDK-DGYTPLHLAAREGHLEIVEVL--------------------------LKAGAD- 93
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     G T LH+AA  G+ + V++LL   A+V+A      T  DL
Sbjct: 94  ------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL 140

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 44/180 (24%)
Query: 82  LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
           L++A R G  + V+ L+    +V   D   G T LH AA  GH+  + +++         
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL--------- 55
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
                            K+  D       VN     G T LH+AA  G+ + V++LL   
Sbjct: 56  -----------------KAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           A+V+A         D    G TPLH AA  G+L+  +VLL  GA   + +  G  P D+A
Sbjct: 92  ADVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G T LH+AA  G+ + V++LL   A+V+A         D    G TPLH AA 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 78  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G   +PLH AA +GH EIV +LL+ GAD
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+++  G T L  A R GH E+V+ LL    +V   D   G T LH AA  GH+  + +
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 131 VV 132
           ++
Sbjct: 120 LL 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 83/196 (42%), Gaps = 44/196 (22%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+++  G T L  A R GH E+V+ LL    +V
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D   G T LH AA  GH+  + ++                          +K+  D 
Sbjct: 62  NAKDK-DGYTPLHLAAREGHLEIVEVL--------------------------LKAGAD- 93
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
                 VN     G T LH+AA  G+ + V++LL   A+V+A              G TP
Sbjct: 94  ------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD----------KFGKTP 137
Query: 225 LHFAACGGNLKCCQVL 240
              A   GN    +VL
Sbjct: 138 FDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G T LH+AA  G+ + V++LL   A+V+A         D    G TPLH AA 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 78  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G   +PLH AA +GH EIV +LL+ GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+++  G T L  A R GH E+V+ LL    +V   D   G T LH AA  GH+  + +
Sbjct: 73  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+++  G T L  A R GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D   G T LH AA  GH+  + ++                          +K+  D 
Sbjct: 74  NAKDK-DGYTPLHLAAREGHLEIVEVL--------------------------LKAGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     G T LH+AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G T LH+AA  G+ + V++LL   A+V+A         D    G TPLH AA 
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 90  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +     FG   +PLH     GH EI+ +LL+  AD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNANDWFG--ITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ +  G T L  A   GH E+V+ LL +  +V   DY  G T LH AA +GH+  + +
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-QGYTPLHLAAEDGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ ++ G T L      GH E+++ LL +  +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
             +D  SG T LH AA  GH+  + ++                          +K   D 
Sbjct: 74  NASDK-SGWTPLHLAAYRGHLEIVEVL--------------------------LKYGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     G T LH+AA +G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 44/164 (26%)
Query: 82  LMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 141
           L++A R G  + V+ L+    +V   D+  G T LH    NGH+  I +++         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWF-GITPLHLVVNNGHLEIIEVLL--------- 67
Query: 142 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 201
                            K   D       VN +   G T LH+AA  G+ + V++LL   
Sbjct: 68  -----------------KYAAD-------VNASDKSGWTPLHLAAYRGHLEIVEVLLKYG 103
Query: 202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
           A+V+A+ +           G TPLH AA  G+L+  +VLL  GA
Sbjct: 104 ADVNAMDYQ----------GYTPLHLAAEDGHLEIVEVLLKYGA 137

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           GIT LH+   NG+ + +++LL   A+V+A             +G TPLH AA  G+L+  
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASD----------KSGWTPLHLAAYRGHLEIV 96
Query: 238 QVLLSRGASRMSLNCNGWLPLDVA 261
           +VLL  GA   +++  G+ PL +A
Sbjct: 97  EVLLKYGADVNAMDYQGYTPLHLA 120

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N      S   G  +PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNASDHVGW-TPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ +  G T L  A   GH EVV+ LL    +V   D+ +G T LH AA  GH+  + +
Sbjct: 73  VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+ ++ G T L  A  +GH E+V+ LL    +V
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D L G T LH AA  GH+  + ++                          +K+  D 
Sbjct: 74  NADDSL-GVTPLHLAADRGHLEVVEVL--------------------------LKNGAD- 105
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                 VN     G T LH+AA  G+ + V++LL   A+V+A      T+ D+
Sbjct: 106 ------VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN +   G T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD----------SLGVTPLHLAAD 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   + + NG+ PL +A   G    +E LL   +D
Sbjct: 90  RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AA  G   E ++L+  N      +   GL +PLH AAA G  EIV +LL+NGAD
Sbjct: 7   GKKLLEAAAAGQDDEVRILM-ANGADVNATDDNGL-TPLHLAAANGQLEIVEVLLKNGAD 64
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           VN+ +  G T L  A   GH E+V+ LL    +V   D  +G T LH AA++G +  + +
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR-AGWTPLHLAALSGQLEIVEV 123
Query: 131 VV 132
           ++
Sbjct: 124 LL 125

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   D G+T LH+AA NG  + V++LL   A+V+A             AG TPLH AA 
Sbjct: 32  VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD----------SAGITPLHLAAY 81
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 278
            G+L+  +VLL  GA   + +  GW PL +A + G+   +E LL   +D
Sbjct: 82  DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ A R G   E ++L+     +      G   +PLH AA +GH EIV +LL++GAD
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           VN+R+  G+T L  A   GH E+V+ LL +  +V   D   G+TA   +  NG+
Sbjct: 73  VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGN 125

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   D G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW----------GRTPLHLAAT 89
Query: 231 GGNLKCCQVLLSRGA 245
            G+L+  +VLL  GA
Sbjct: 90  VGHLEIVEVLLEYGA 104

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 136/317 (42%), Gaps = 61/317 (19%)
Query: 12  ERLVSAARDGDFVEAKMLLDCNPCLAK-YSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           + L+ AAR G+  E K++    P     +++ G  ++PLH AA      IV LLL++GAD
Sbjct: 26  DELLEAARSGN--EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           V++++  G   L  AC YGH+EV + LL     V   D L   T LH AA    V    L
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSL 142
Query: 131 VVA----------------DFVPSVPF-EVMNTQIEGD-------RGDGSSVKSKCDQSA 166
           +++                D  P+    E +  + +G          D + VK      A
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL---A 199
Query: 167 LSKFVNKAADGGITALH--MAALNGYFDCV-QLLLDLHANVS------------------ 205
           L     K      TALH  +A+L+     V +LLL   ANV+                  
Sbjct: 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259
Query: 206 ----AVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 260
                V   +G  M+ + + G T LH AA  G+L+ C++LLS G+    ++  G+     
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF----T 315
Query: 261 ARMWGRHWLEPLLAPSS 277
           A   G   ++ +L+ S+
Sbjct: 316 AAQMGNEAVQQILSEST 332

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAK 55
           MG S G S +  +L+ AA+ GD    K L     ++C     + ST      PLHFAA  
Sbjct: 3   MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGY 56
Query: 56  GHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTA 115
               +V  LL++GADV++++  G   L  AC YGH+EV + L+     V  AD L   T 
Sbjct: 57  NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTP 115
Query: 116 LHFAAVNGHVRCIRLVV 132
           LH AA  G     +L++
Sbjct: 116 LHEAAAKGKYEICKLLL 132

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G +L+ AAR G   E ++L+     +      G   +PLH AA  GH EIV +LL++GAD
Sbjct: 15  GRKLLEAARAGQDDEVRILMANGADVNAADNTG--TTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           V++ +  G T L  A  +GH E+V+ LL    +V   D   G T LH AA  G++  + +
Sbjct: 73  VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLEIVEV 131
Query: 131 VV 132
           ++
Sbjct: 132 LL 133

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 34/166 (20%)
Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
           AA  G ++ V +L+ NGADVN+ +  G T L  A   GH E+V+ LL    +V  +D   
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF- 79
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           G T LH AA  GH+  + +++                          K+  D       V
Sbjct: 80  GYTPLHLAAYWGHLEIVEVLL--------------------------KNGAD-------V 106
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
           N     G+T LH+AA  GY + V++LL   A+V+A      T+ D+
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN A + G T LH+AA +G+ + V++LL   A+V A              G TPLH AA 
Sbjct: 40  VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF----------GYTPLHLAAY 89
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
            G+L+  +VLL  GA   +++ +G  PL +A  WG
Sbjct: 90  WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWG 124

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 98/228 (42%), Gaps = 22/228 (9%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           SPLH AA  GH +I  +L++ GA++++ +   +T LM+A    H E V+ L+     V  
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
            D   G T LH AA  GH   ++ ++++    V     N Q +G                
Sbjct: 73  KD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-----NCQDDGGWTPMIWATEYKHVDL 126
Query: 167 LSKFVNKAADGGITA------LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA 220
           +   ++K +D  I        LH AA +G  D  ++LL    ++ AV  H          
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH---------- 176
Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 268
           G +PLH AA      C  + LSR +     N  G  PL  A +  + W
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ A R G   E ++L+     +      G   +PLH AA +GH EIV +LL++GAD
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           VN+ +  G+T L  A   GH E+V+ LL +  +V   D   G+TA   +  NG+
Sbjct: 73  VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGN 125

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   D G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW----------GRTPLHLAAT 89
Query: 231 GGNLKCCQVLLSRGA 245
            G+L+  +VLL  GA
Sbjct: 90  VGHLEIVEVLLEYGA 104

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N          GL +PLH AA   H EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNAEDKVGL-TPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           VN+ +  G+T L     YGH E+V+ LL    +V   D   G+TA   +  NG+
Sbjct: 73  VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGN 125

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN     G+T LH+AA+N + + V++LL   A+V+A+        D I  G TPLH  A 
Sbjct: 40  VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI--------DAI--GETPLHLVAM 89
Query: 231 GGNLKCCQVLLSRGA 245
            G+L+  +VLL  GA
Sbjct: 90  YGHLEIVEVLLKHGA 104

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ A R G   E ++L+     +      G   +PLH AA +GH EIV +LL++GAD
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           VN+ +  G+T L  A   GH E+V+ LL +  +V   D   G+TA   +  NG+
Sbjct: 73  VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGN 125

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   D G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----------SWGRTPLHLAAT 89
Query: 231 GGNLKCCQVLLSRGA 245
            G+L+  +VLL  GA
Sbjct: 90  VGHLEIVEVLLEYGA 104

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G  N+PLH AA   H EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNANDRKG--NTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           VN+ +  G T L  A  +GH E+V+ LL    +V   D   G+TA   +  NG+
Sbjct: 73  VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGN 125

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E + +L  N      + + G ++PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVR-ILTANGADVNANDYWG-HTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           VN+    G+T L  A    H E+V+ LL    +V   D   G+TA   +  NG+
Sbjct: 73  VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGN 125

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 4   SFGCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
           + G S +  +L+ AA+ GD    K L     ++C     + ST      PLHFAA     
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGYNRV 55
Query: 59  EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
            +V  LL++GADV++++  G   L  AC YGH+EV + L+     V  AD L   T LH 
Sbjct: 56  SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHE 114
Query: 119 AAVNGHVRCIRLVV 132
           AA  G     +L++
Sbjct: 115 AAAKGKYEICKLLL 128

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           V+    GG+  LH A   G+++  +LL+   A V+                 TPLH AA 
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----------KFTPLHEAAA 117
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
            G  + C++LL  GA     N +G  PLD+ +
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 6   GCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           G S +  +L+ AA+ GD    K L     ++C     + ST      PLHFAA      +
Sbjct: 6   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGYNRVSV 59
Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V  LL++GADV++++  G   L  AC YGH+EV + L+     V  AD L   T LH AA
Sbjct: 60  VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAA 118
Query: 121 VNGHVRCIRLVV 132
             G     +L++
Sbjct: 119 AKGKYEICKLLL 130

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           V+    GG+  LH A   G+++  +LL+   A V+                 TPLH AA 
Sbjct: 70  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----------KFTPLHEAAA 119
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
            G  + C++LL  GA     N +G  PLD+ +
Sbjct: 120 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
           N+PLH AA  GH E V  LL  GADVN+R+  G T L  A + GH E+V+ LL    +V 
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVA 133
            A    G T  H A  NGH   ++L+ A
Sbjct: 70  -ARSKDGNTPEHLAKKNGHHEIVKLLDA 96

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G T LH AA NG+ + V+ LL   A+V+A       S D    G+TPLH AA  G+ +  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNA------RSKD----GNTPLHLAAKNGHAEIV 58
Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           ++LL++GA   + + +G  P  +A+  G H +  LL
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +     +G   +PL+ A A GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDEYG--LTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           VN+ +  G T L  A   GH E+ + LL    +V   D   G+TA   +  NG+
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF-GKTAFDISIGNGN 125

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   + G+T L++A  +G+ + V++LL   A+V+AV        D IG   TPLH AA 
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--------DAIGF--TPLHLAAF 89
Query: 231 GGNLKCCQVLLSRGA 245
            G+L+  +VLL  GA
Sbjct: 90  IGHLEIAEVLLKHGA 104

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N          GL +PLH AA  GH EIV +LL+ GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNALDEDGL-TPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           VN+ +  G T L  A   GH E+V+ LL    +V   D   G+TA   +  NG+
Sbjct: 73  VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGN 125

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           VN   + G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED----------NFGITPLHLAAI 89
Query: 231 GGNLKCCQVLLSRGA 245
            G+L+  +VLL  GA
Sbjct: 90  RGHLEIVEVLLKHGA 104

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 49  LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
           LH A+ KG    V  LL+NG+D N +++ G T L +AC +GH +VV+ LL  +  V    
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 109 YLSGRTALHFAAVNGHVRCIRLVVA 133
           Y    + LH AA NGHV  ++L+++
Sbjct: 74  Y-QNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 43/148 (29%)
Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           G T LH A++ G +           PSV + + N       G   +VK            
Sbjct: 10  GETLLHIASIKGDI-----------PSVEYLLQN-------GSDPNVKDH---------- 41
Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
                 G T LH A  +G+   V+LLL   A V+   +             +PLH AA  
Sbjct: 42  -----AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKN 86
Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLD 259
           G++   ++LLS GASR ++N  G  P+D
Sbjct: 87  GHVDIVKLLLSYGASRNAVNIFGLRPVD 114

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           A + G F   K LLD N    K    G  N+PL +A + GH+E+VALLL++GA +N+ N 
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSG--NTPLIYACSGGHHELVALLLQHGASINASNN 183
Query: 77  CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV 136
            G TAL +A    H  VV+ LLL   +V   +    RTA+  A  N  +  +  VV   V
Sbjct: 184 KGNTALHEAVIEKHVFVVELLLLHGASVQVLNK-RQRTAVDCAEQNSKIMELLQVVPSCV 242
Query: 137 PSVPFEVMNTQIEGDRGDGSSVK 159
            S     ++   E DR +  +VK
Sbjct: 243 AS-----LDDVAETDRKEYVTVK 260

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
           +SPLH AA  G  +++ LLL++GA+  +RN      L  AC+ GH++VV+ LL       
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
           + D LSG T L +A   GH   + L++                      G+S        
Sbjct: 147 KKD-LSGNTPLIYACSGGHHELVALLLQ--------------------HGAS-------- 177
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMD 216
                +N + + G TALH A +  +   V+LLL   A+V  +     T++D
Sbjct: 178 -----INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD 223

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 104/233 (44%), Gaps = 38/233 (16%)
Query: 56  GHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTA 115
           G  E V  LLE GAD+N  N  G TAL QAC   + ++V+ L+    N+ + D   G   
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-EGWIP 109
Query: 116 LHFAAVNGHVRCIRLVVAD--FVPSV------PFEV-------------MNTQ---IEGD 151
           LH AA  G++     +++    V +V      P ++             +N Q   IE  
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 152 RGDGSSVKSKCDQSAL-SKFVN--KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 208
           R +   +  +  +  L S  +N  + A  G TALH+AA  GY + ++LL+    +V+   
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229
Query: 209 FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           +           G TPLH AA  G  + C++L+       ++N  G    DVA
Sbjct: 230 YD----------GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+      A ++T     SPLH AA  GH     +LL  G  
Sbjct: 3   GKKLLEAARAGQDDEVRILMANG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
            ++R    +T L  A   GH  +V+ LL    +V   D L   TALH+A  + H   + L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVEL 118
Query: 131 VV 132
           ++
Sbjct: 119 LI 120

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 42  FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
           F G  +PL ++   G++E+   LLE+GA+VN RN  G+T L+ A +YG  E+V+ LL   
Sbjct: 99  FSG-KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRL 130
            +++  D L+G TA   A + G    I++
Sbjct: 158 ADISARD-LTGLTAEASARIFGRQEVIKI 185

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 112/275 (40%), Gaps = 65/275 (23%)
Query: 7   CSASGER--------LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
            S+SG R        L+ A ++ D    + LL+    +      GG  +PLH A      
Sbjct: 14  TSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRE 72
Query: 59  EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
           +IV LLL +GAD   R   G T  + A   G  ++++  L    +V   D+  G TA   
Sbjct: 73  DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFY-GFTAFME 131
Query: 119 AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSV--KSKCDQSALSKFVNKAAD 176
           AAV G V+ ++ +                    RG   ++  K+K DQ  L K       
Sbjct: 132 AAVYGKVKALKFLYK------------------RGANVNLRRKTKEDQERLRK------- 166
Query: 177 GGITALHMAALNGYFDCVQLLLD-----------------LHA-------NVSAVT---F 209
           GG TAL  AA  G+ + +++LLD                 +HA       +V A+T    
Sbjct: 167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 226
Query: 210 HYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSR 243
            +G  +++ G  G TPL  A    +L   Q LL +
Sbjct: 227 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 46/217 (21%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           + LH+A + GH EIV  LL+ G  VN ++  G + L  A   G  E+V+ LL+   +V  
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 107 ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
            +  +G T LH+AA  N H   + L                 +EG  G     K   D  
Sbjct: 102 VNQ-NGCTPLHYAASKNRHEIAVML-----------------LEG--GANPDAKDHYDA- 140
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
                         TA+H AA  G    V +LL          F+  ++      G+TPL
Sbjct: 141 --------------TAMHRAAAKGNLKMVHILL----------FYKASTNIQDTEGNTPL 176
Query: 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
           H A     ++  + L+++GAS    N     PL VA+
Sbjct: 177 HLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
           TALH A   G+ + V+ LL L   V+          D   AG +PLH AA  G  +  + 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKA 91
Query: 240 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           LL +GA   ++N NG  PL  A    RH +  +L
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 46/217 (21%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           + LH+A + GH EIV  LL+ G  VN ++  G + L  A   G  E+V+ LL+   +V  
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 107 ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
            +  +G T LH+AA  N H   + L                 +EG  G     K   D  
Sbjct: 102 VNQ-NGCTPLHYAASKNRHEIAVML-----------------LEG--GANPDAKDHYDA- 140
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
                         TA+H AA  G    V +LL          F+  ++      G+TPL
Sbjct: 141 --------------TAMHRAAAKGNLKMVHILL----------FYKASTNIQDTEGNTPL 176
Query: 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
           H A     ++  + L+++GAS    N     PL VA+
Sbjct: 177 HLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
           TALH A   G+ + V+ LL L   V+          D   AG +PLH AA  G  +  + 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGXDEIVKA 91
Query: 240 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           LL +GA   ++N NG  PL  A    RH +  +L
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
          G++L+ AAR G   E ++L+     +A     G  ++PLH AA  GH E+V LLLE GAD
Sbjct: 7  GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 64
Query: 71 VNSRNYCGQTALMQACRYGHWEVVQTL 97
          VN+++  G+TA   +   G+ ++ + L
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADV +++  G T L  A R GH EVV+ LL    +V
Sbjct: 6   LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 105 TRADYLSGRTALHFAAVNGH 124
              D   G+TA   +  NG+
Sbjct: 66  NAQDKF-GKTAFDISIDNGN 84

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 48/218 (22%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           + LH+A + GH EIV  LL+ G  VN ++  G + L  A   G  E+V+ LL     V  
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 107 ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
            +  +G T LH+AA  N H   + L                 +EG    G++  +K    
Sbjct: 102 VNQ-NGCTPLHYAASKNRHEIAVML-----------------LEG----GANPDAKDHYE 139
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTP 224
           A             TA+H AA  G    + +LL           +Y  S ++    G+TP
Sbjct: 140 A-------------TAMHRAAAKGNLKMIHILL-----------YYKASTNIQDTEGNTP 175
Query: 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
           LH A     ++  ++L+S+GAS    N     PL VA+
Sbjct: 176 LHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 130 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189
           L+V +   S   E +   I  D+    S+ ++ DQ +             TALH A   G
Sbjct: 8   LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 51
Query: 190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249
           + + V+ LL L   V+          D   AG +PLH AA  G  +  + LL +GA   +
Sbjct: 52  HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 250 LNCNGWLPLDVARMWGRHWLEPLL 273
           +N NG  PL  A    RH +  +L
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVML 125

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 48/218 (22%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           + LH+A + GH EIV  LL+ G  VN ++  G + L  A   G  E+V+ LL     V  
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 107 ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
            +  +G T LH+AA  N H   + L                 +EG    G++  +K    
Sbjct: 103 VNQ-NGCTPLHYAASKNRHEIAVML-----------------LEG----GANPDAKDHYE 140
Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTP 224
           A             TA+H AA  G    + +LL           +Y  S ++    G+TP
Sbjct: 141 A-------------TAMHRAAAKGNLKMIHILL-----------YYKASTNIQDTEGNTP 176
Query: 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
           LH A     ++  ++L+S+GAS    N     PL VA+
Sbjct: 177 LHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 130 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189
           L+V +   S   E +   I  D+    S+ ++ DQ +             TALH A   G
Sbjct: 9   LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 52
Query: 190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249
           + + V+ LL L   V+          D   AG +PLH AA  G  +  + LL +GA   +
Sbjct: 53  HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 250 LNCNGWLPLDVARMWGRHWLEPLL 273
           +N NG  PL  A    RH +  +L
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVML 126

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 57/260 (21%)
Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L+ A ++ D    + LL+    +      GG  +PLH A      +IV LLL +GAD   
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
           R   G T  + A   G  ++++  L    +V   D+  G TA   AAV G V+ ++ +  
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY-GFTAFMEAAVYGKVKALKFLYK 126
Query: 134 DFVPSVPFEVMNTQIEGDRGDGSSV--KSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
                             RG   ++  K+K DQ  L K       GG TAL  AA  G+ 
Sbjct: 127 ------------------RGANVNLRRKTKEDQERLRK-------GGATALMDAAEKGHV 161
Query: 192 DCVQLLLD-----------------LHA-------NVSAVT---FHYGTSMDLIGA-GST 223
           + +++LLD                 +HA       +V A+T     +G  +++ G  G T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221
Query: 224 PLHFAACGGNLKCCQVLLSR 243
           PL  A    +L   Q LL +
Sbjct: 222 PLILAVEKKHLGLVQRLLEQ 241

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           +PL +AAA G   +V  LL+NGAD        ++AL  AC  G+ ++V+ LL    +V  
Sbjct: 36  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV 132
            D+ +G T L +A    HV+C+++++
Sbjct: 96  YDW-NGGTPLLYAVHGNHVKCVKMLL 120

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 236
           G  +AL +A   GY D V++LLD   +V+   ++          G TPL +A  G ++KC
Sbjct: 66  GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKC 115
Query: 237 CQVLLSRGASRMSLNCNGWLPLDVARMWG 265
            ++LL  GA       +G+  +D+A   G
Sbjct: 116 VKMLLESGADPTIETDSGYNSMDLAVALG 144

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           +PL +AAA G   +V  LL+NGAD        ++AL  AC  G+ ++V+ LL    +V  
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV 132
            D+ +G T L +A    HV+C+++++
Sbjct: 98  YDW-NGGTPLLYAVHGNHVKCVKMLL 122

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 236
           G  +AL +A   GY D V++LLD   +V+   ++          G TPL +A  G ++KC
Sbjct: 68  GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKC 117
Query: 237 CQVLLSRGASRMSLNCNGWLPLDVARMWG 265
            ++LL  GA       +G+  +D+A   G
Sbjct: 118 VKMLLESGADPTIETDSGYNSMDLAVALG 146

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +A     G  ++PLH AA  GH E+V LLLE GAD
Sbjct: 25  GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 82
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTL 97
           V +++  G+TA   +   G+ ++ + L
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADV +++  G T L  A R GH EVV+ LL    +V
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 105 TRADYLSGRTALHFAAVNGH 124
              D   G+TA   +  NG+
Sbjct: 84  XAQDKF-GKTAFDISIDNGN 102

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 12  ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV 71
           + + +  R+G+ V  ++ LD            G  SPLH+A  +G + +V +L+  GA +
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIMRGARI 65
Query: 72  NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
           N  N    T L  A  +GH ++VQ LL ++ ++   +   G   LH+A   G  +    +
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDL 124
Query: 132 VAD 134
           VA+
Sbjct: 125 VAN 127

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           +N    G  T LH+AA +G+ D VQ LL   A+++AV  H          G+ PLH+A  
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 114
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
            G  +  + L++ GA     N  G +P+D A+
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 12  ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV 71
           + + +  R+G+ V  ++ LD            G  SPLH+A  +G + +V +L+  GA +
Sbjct: 2   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIMRGARI 60
Query: 72  NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
           N  N    T L  A  +GH ++VQ LL ++ ++   +   G   LH+A   G  +    +
Sbjct: 61  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDL 119
Query: 132 VAD 134
           VA+
Sbjct: 120 VAN 122

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           +N    G  T LH+AA +G+ D VQ LL   A+++AV  H          G+ PLH+A  
Sbjct: 60  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 109
Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
            G  +  + L++ GA     N  G +P+D A+
Sbjct: 110 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           SPLH A   GH   V +LL++GA VN       T L  AC  G W+ V  LL    +V  
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVA 133
              L+  + +H AA  GHV C+  ++A
Sbjct: 154 ESDLA--SPIHEAARRGHVECVNSLIA 178

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 49/201 (24%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF--RCNV 104
           SP+H AA  GH   +  L+  G  VN       + L +AC  GH   V+ LL    + N 
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
             AD+    T L  A V+G   C+ L++                      G+SV+ + D 
Sbjct: 121 VTADW---HTPLFNACVSGSWDCVNLLLQ--------------------HGASVQPESDL 157
Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
           +              + +H AA  G+ +CV  L+    N+     H G          TP
Sbjct: 158 A--------------SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG----------TP 193
Query: 225 LHFAACGGNLKCCQVLLSRGA 245
           L+ A       C + LL  GA
Sbjct: 194 LYLACENQQRACVKKLLESGA 214

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 85/214 (39%), Gaps = 46/214 (21%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           SPLH A   GH   V +LL++GA VN       T L  AC  G W+ V  LL    +V  
Sbjct: 38  SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
              L+  + +H AA  GHV C+  ++A                     G ++  K     
Sbjct: 98  ESDLA--SPIHEAARRGHVECVNSLIA--------------------YGGNIDHKISHLG 135
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
                        T L++A  N    CV+ LL+  A+V+      G   D      +PLH
Sbjct: 136 -------------TPLYLACENQQRACVKKLLESGADVN-----QGKGQD------SPLH 171
Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 260
             A   + +   +L+  GA   + N  G  P+++
Sbjct: 172 AVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 26/229 (11%)
Query: 46  NSPLHFAAAKGH----NEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
           ++PLH A  +G+    + +V L  + G +++  N   QT L  A       VV+ L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP-SVPFEVMNTQIEGDRGDGSSVKS 160
            +    D   G+TA H A  +    C+R ++    P ++  E  N   +G      +V +
Sbjct: 70  ASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN--YDGLTALHVAVNT 126
Query: 161 KCDQSALSKFVNKAAD-------GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 213
           +C Q  +   + + AD        G + L  A  N     VQLLL   ANV+A  +    
Sbjct: 127 EC-QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY---- 181
Query: 214 SMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
                 +GS+ LH A+  G L   + L+  GA     NC+   PL VAR
Sbjct: 182 ------SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           +PL +AAA G   +V  LL+NGAD        ++AL  AC  G+ ++V+ LL    +V  
Sbjct: 54  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV 132
            D+ +G T L +A    HV+C+++++
Sbjct: 114 YDW-NGGTPLLYAVHGNHVKCVKMLL 138

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGADVN+++  G T L  A R GH E+V+ LL    +V
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 105 TRADYLSGRTALHFAAVNGH 124
              D   G+TA   +  NG+
Sbjct: 62  NAQDKF-GKTAFDISIDNGN 80

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G  L SAA  GD  +   LL  N  +   + FG   + L      G+ EI   LL  GA+
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
            + ++  G   +  A R G  + +QTLL F+ +V   D   G   LH AA  GH+R +  
Sbjct: 63  PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
           +V
Sbjct: 122 LV 123

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GNAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
           +AL +A+  GY D V LLL+   +++   ++          G TPL +A  G ++KC + 
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVRGNHVKCVEA 120
Query: 240 LLSRGASRMSLNCNGWLPLDVA 261
           LL+RGA   +   +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
           +AL +A+  GY D V LLL+   +++   ++          G TPL +A  G ++KC + 
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVHGNHVKCVEA 120
Query: 240 LLSRGASRMSLNCNGWLPLDVA 261
           LL+RGA   +   +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G  L SAA  GD  +   LL  N  +   + FG   + L      G+ EI   LL  GA+
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
            + ++  G   +  A R G  + +QTLL F+ +V   D   G   LH AA  GH+R +  
Sbjct: 63  PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
           +V
Sbjct: 122 LV 123

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G   +H AA  G  D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGQLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G  L SAA  GD  +   LL  N  +   + FG   + L      G+ EI   LL  GA+
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
            + ++  G   +  A R G  + +QTLL F+ +V   D   G   LH AA  GH+R +  
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
           +V
Sbjct: 122 LV 123

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G  L SAA  GD  +   LL  N  +   + FG   + L      G+ EI   LL  GA+
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
            + ++  G   +  A R G  + +QTLL F+ +V   D   G   LH AA  GH+R +  
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
           +V
Sbjct: 122 LV 123

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCN 103
           +++PLH AA +G+   +   L+N   VN  +  G TAL  AC  GH ++V+ L       
Sbjct: 73  IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 104 VTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
           + + + L G TALH AA  G+   ++L++A
Sbjct: 133 LNQQNKL-GDTALHAAAWKGYADIVQLLLA 161

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 35/172 (20%)
Query: 79  QTALMQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP 137
           ++ L+ A +    + +  LL F  C V +   + G TALH AA+  ++    +V+ +  P
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEA-AMVLMEAAP 61
Query: 138 SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 197
            + FE M +++                             G TALH+A +N   + V+ L
Sbjct: 62  ELVFEPMTSELYE---------------------------GQTALHIAVINQNVNLVRAL 94
Query: 198 LDLHANVSA----VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
           L   A+VSA      FHY    +LI  G  PL FAAC G+ +  ++L+  GA
Sbjct: 95  LARGASVSARATGSVFHY-RPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA 145

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 84/227 (37%), Gaps = 43/227 (18%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           + LH AA     +    LL+ GAD NS++  G+T L  A       V Q LL  R     
Sbjct: 53  TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN 112
Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
           A    G T L  AA        RL +   V  +                  + +  D   
Sbjct: 113 ARMHDGTTPLILAA--------RLAIEGMVEDL------------------ITADAD--- 143
Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
               +N A + G TALH AA     + V +LL  HAN  A                TPL 
Sbjct: 144 ----INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD----------DKDETPLF 189
Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
            AA  G+ +  + LL   A+R   +    LP DVA     H +  LL
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G  L SAA  GD  +   LL  N  +   + FG   + L      G+ EI   LL  GA+
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGAN 62
Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
            + ++  G   +  A R G  + +QTLL  + +V   D   G   LH AA  GH+R +  
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLRVVEF 121
Query: 131 VV 132
           +V
Sbjct: 122 LV 123

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLENQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 238 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 273
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 143 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 202
           ++++ +EG+      +  + D  +L        D GITALH A   G+ + V+ L+    
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPN------DEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250
           NV+A              G TPLH AA   N++ C+ L+  GA+  ++
Sbjct: 95  NVNAAD----------SDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 176 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 235
           D GITALH A   G+ + V+ L+    NV+A              G TPLH AA   N++
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD----------SDGWTPLHCAASCNNVQ 117
Query: 236 CCQVLLSRGASRMSL 250
            C+ L+  GA+  ++
Sbjct: 118 VCKFLVESGAAVFAM 132

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 14  LVSAARDGDFVEAKMLL-DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           L+ AA   D  + K +L D    + +  T G  N+PL+ A      EI   L++ GAD+N
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEG--NTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 73  SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
            +N    +  + A   G  E++  +L             G  AL  AA  GH+  ++L++
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 133 ADFVPSVPFE 142
            D    + F+
Sbjct: 127 EDGREDIDFQ 136

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 37  AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQT 96
           AK S  G   + L  A + G  ++V  LL   ADVN ++  G TALM AC +GH E+   
Sbjct: 177 AKASQAG--QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234
Query: 97  LLLF-RCNVTRADYLSGRTALHFA 119
           LL    C+++  D   G TAL  A
Sbjct: 235 LLAVPSCDISLTDR-DGSTALMVA 257

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 35/177 (19%)
Query: 43  GGLNS-PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
           G LNS PLH+A  +GH  +V  L++ GAD +  +  G + +  A ++GH  +V  L+   
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Query: 102 CNVTRADYLSGRTALHFAAVNGH-VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
            +V   D  +G T L +AA   H V   RL++  F  SV          GD+   +    
Sbjct: 133 QDVDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNL--------GDKYHKN---- 178
Query: 161 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 217
                              TALH A L G    + LLL+  ANV A      +++DL
Sbjct: 179 -------------------TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 37/170 (21%)
Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLL-----F 100
            +PLH A      EI   LL  G D   R++ G T L  AC  G    V  L        
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 101 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
             ++ +A   +G T LH A+++G++  + L+V+                   G   + + 
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVS------------------LGADVNAQE 147
Query: 161 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 210
            C+              G TALH+A      D V LLL   A+V+ VT+ 
Sbjct: 148 PCN--------------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 17 AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
          A ++GD  E K  +    D N       T  G   PLH+AA  G  EI+  LL  GAD+N
Sbjct: 9  ALKNGDLDEVKDYVAKGEDVN------RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 73 SRNYCGQTALMQACRYGHWEVVQTLL 98
          + +    T L+ A   GH   V+ LL
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLL 88

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 37/170 (21%)
Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLL-----F 100
            +PLH A      EI   LL  G D   R++ G T L  AC  G    V  L        
Sbjct: 43  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 101 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
             ++ +A   +G T LH A+++G++  + L+V+                   G   + + 
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVS------------------LGADVNAQE 144
Query: 161 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 210
            C+              G TALH+A      D V LLL   A+V+ VT+ 
Sbjct: 145 PCN--------------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 180

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 17 AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
          A ++GD  E K  +    D N       T  G   PLH+AA  G  EI+  LL  GAD+N
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVN------RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 73 SRNYCGQTALMQACRYGHWEVVQTLL 98
          + +    T L+ A   GH   V+ LL
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLL 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	513
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-49
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-49
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-47
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-45
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-49
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-44
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-48
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-38
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-48
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-46
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-41
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-38
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-48
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-48
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-44
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-42
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-47
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-45
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-41
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-47
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-44
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-43
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-47
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-45
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-46
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-46
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-42
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-39
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-45
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-45
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-40
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-44
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-44
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-41
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-39
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-44
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-44
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-40
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-44
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-42
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-44
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-44
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-43
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-34
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-28
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-43
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-31
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-18
2rfa_A	232	Transient receptor potential cation channel subfa	2e-42
2rfa_A	232	Transient receptor potential cation channel subfa	4e-37
2rfa_A	232	Transient receptor potential cation channel subfa	2e-30
2rfa_A	232	Transient receptor potential cation channel subfa	5e-30
2rfa_A	232	Transient receptor potential cation channel subfa	1e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-42
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-39
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-37
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-42
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-38
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-42
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-38
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-41
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-40
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-34
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-40
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-32
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-39
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-39
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-35
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-38
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-30
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-30
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-37
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-30
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-37
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-32
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-36
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-31
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-36
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-35
2pnn_A	273	Transient receptor potential cation channel subfa	5e-31
2pnn_A	273	Transient receptor potential cation channel subfa	1e-27
2pnn_A	273	Transient receptor potential cation channel subfa	5e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-35
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	7e-35
2etb_A	256	Transient receptor potential cation channel subfam	2e-31
2etb_A	256	Transient receptor potential cation channel subfam	9e-30
2etb_A	256	Transient receptor potential cation channel subfam	6e-25
2etb_A	256	Transient receptor potential cation channel subfam	1e-12
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-34
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-32
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-34
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-33
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-26
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-29
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-29
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-28
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-26
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-07

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  175 bits (446), Expect = 1e-49
 Identities = 67/257 (26%), Positives = 97/257 (37%), Gaps = 52/257 (20%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A    +    K+LL         +  G   +PLH AA +   E+   LL+ G   N+
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNG--YTPLHIAAKQNQVEVARSLLQYGGSANA 240

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV- 132
            +  G T L  A + GH E+V  LL  + N    +  SG T LH  A  GHV    +++ 
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIK 299

Query: 133 --ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
                                                   V+     G T LH+A+  G 
Sbjct: 300 HGVM------------------------------------VDATTRMGYTPLHVASHYGN 323

Query: 191 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250
              V+ LL   A+V+A T            G +PLH AA  G+     +LL  GAS   +
Sbjct: 324 IKLVKFLLQHQADVNAKTKL----------GYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373

Query: 251 NCNGWLPLDVARMWGRH 267
           + +G  PL +A+  G  
Sbjct: 374 SSDGTTPLAIAKRLGYI 390

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  171 bits (437), Expect = 2e-48
 Identities = 66/219 (30%), Positives = 90/219 (41%), Gaps = 50/219 (22%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            +PLH A+  GH  IV  LL+ GA  N  N   +T L  A R GH EV + LL  +  V 
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
                  +T LH AA  GH   ++L++   A+                            
Sbjct: 75  AKAK-DDQTPLHCAARIGHTNMVKLLLENNAN---------------------------- 105

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
                    N A   G T LH+AA  G+ + V  LL+  A+ + +T            G 
Sbjct: 106 --------PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK----------GF 147

Query: 223 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           TPLH AA  G ++  ++LL R A   +   NG  PL VA
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  170 bits (434), Expect = 6e-48
 Identities = 72/248 (29%), Positives = 94/248 (37%), Gaps = 52/248 (20%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           AAR G    AK LL     +   +      +PLH AA  GH  +V LLLEN A+ N    
Sbjct: 54  AARAGHTEVAKYLLQNKAKVNAKAKDD--QTPLHCAARIGHTNMVKLLLENNANPNLATT 111

Query: 77  CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---A 133
            G T L  A R GH E V  LL    +        G T LH AA  G VR   L++   A
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDA 170

Query: 134 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 193
                                                 N A   G+T LH+A  +   D 
Sbjct: 171 H------------------------------------PNAAGKNGLTPLHVAVHHNNLDI 194

Query: 194 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 253
           V+LLL    +  +  ++          G TPLH AA    ++  + LL  G S  + +  
Sbjct: 195 VKLLLPRGGSPHSPAWN----------GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244

Query: 254 GWLPLDVA 261
           G  PL +A
Sbjct: 245 GVTPLHLA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  169 bits (431), Expect = 2e-47
 Identities = 65/248 (26%), Positives = 96/248 (38%), Gaps = 52/248 (20%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           AAR G     K+LL+ N      +T G  ++PLH AA +GH E V  LLE  A       
Sbjct: 87  AARIGHTNMVKLLLENNANPNLATTAG--HTPLHIAAREGHVETVLALLEKEASQACMTK 144

Query: 77  CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---A 133
            G T L  A +YG   V + LL    +   A   +G T LH A  + ++  ++L++    
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGG 203

Query: 134 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 193
                                                 +  A  G T LH+AA     + 
Sbjct: 204 S------------------------------------PHSPAWNGYTPLHIAAKQNQVEV 227

Query: 194 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 253
            + LL    + +A +            G TPLH AA  G+ +   +LLS+ A+    N +
Sbjct: 228 ARSLLQYGGSANAESVQ----------GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277

Query: 254 GWLPLDVA 261
           G  PL + 
Sbjct: 278 GLTPLHLV 285

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  167 bits (426), Expect = 9e-47
 Identities = 67/219 (30%), Positives = 88/219 (40%), Gaps = 50/219 (22%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            +PLH AA  GH E+   LL+N A VN++    QT L  A R GH  +V+ LL    N  
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
            A   +G T LH AA  GHV  +  ++   A                             
Sbjct: 108 LATT-AGHTPLHIAAREGHVETVLALLEKEAS---------------------------- 138

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
                          G T LH+AA  G     +LLL+  A+ +A   +          G 
Sbjct: 139 --------QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN----------GL 180

Query: 223 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           TPLH A    NL   ++LL RG S  S   NG+ PL +A
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  166 bits (424), Expect = 2e-46
 Identities = 65/256 (25%), Positives = 94/256 (36%), Gaps = 52/256 (20%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  AA+ G    A++LL+ +         G   +PLH A    + +IV LLL  G   +S
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNG--LTPLHVAVHHNNLDIVKLLLPRGGSPHS 207

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV- 132
             + G T L  A +    EV ++LL +  +        G T LH AA  GH   + L++ 
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVALLLS 266

Query: 133 --ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
             A+                                     N     G+T LH+ A  G+
Sbjct: 267 KQAN------------------------------------GNLGNKSGLTPLHLVAQEGH 290

Query: 191 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250
                +L+     V A T            G TPLH A+  GN+K  + LL   A   + 
Sbjct: 291 VPVADVLIKHGVMVDATTRM----------GYTPLHVASHYGNIKLVKFLLQHQADVNAK 340

Query: 251 NCNGWLPLDVARMWGR 266
              G+ PL  A   G 
Sbjct: 341 TKLGYSPLHQAAQQGH 356

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  163 bits (416), Expect = 2e-45
 Identities = 56/219 (25%), Positives = 80/219 (36%), Gaps = 50/219 (22%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            +PLH AA  G   +  LLLE  A  N+    G T L  A  + + ++V+ LL    +  
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
              + +G T LH AA    V   R ++                                 
Sbjct: 207 SPAW-NGYTPLHIAAKQNQVEVARSLLQYGGS---------------------------- 237

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
                    N  +  G+T LH+AA  G+ + V LLL   AN +               G 
Sbjct: 238 --------ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS----------GL 279

Query: 223 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           TPLH  A  G++    VL+  G    +    G+ PL VA
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  160 bits (407), Expect = 5e-44
 Identities = 64/266 (24%), Positives = 93/266 (34%), Gaps = 59/266 (22%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVA 62
              G +     L  AA+      A+ LL         S  G   +PLH AA +GH E+VA
Sbjct: 209 AWNGYTP----LHIAAKQNQVEVARSLLQYGGSANAESVQG--VTPLHLAAQEGHAEMVA 262

Query: 63  LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN 122
           LLL   A+ N  N  G T L    + GH  V   L+     V       G T LH A+  
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHY 321

Query: 123 GHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI 179
           G+++ ++ ++   AD                                    VN     G 
Sbjct: 322 GNIKLVKFLLQHQAD------------------------------------VNAKTKLGY 345

Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
           + LH AA  G+ D V LLL   A+ + V+            G+TPL  A   G +    V
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSD----------GTTPLAIAKRLGYISVTDV 395

Query: 240 L---LSRGASRMSLNCNGWLPLDVAR 262
           L       +  +  + +     +   
Sbjct: 396 LKVVTDETSFVLVSDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  137 bits (347), Expect = 1e-35
 Identities = 52/198 (26%), Positives = 73/198 (36%), Gaps = 50/198 (25%)

Query: 67  NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126
            G         G T L  A   GH  +V+ LL    +   ++     T LH AA  GH  
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTE 61

Query: 127 CIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183
             + ++   A                                     VN  A    T LH
Sbjct: 62  VAKYLLQNKAK------------------------------------VNAKAKDDQTPLH 85

Query: 184 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243
            AA  G+ + V+LLL+ +AN +  T           AG TPLH AA  G+++    LL +
Sbjct: 86  CAARIGHTNMVKLLLENNANPNLAT----------TAGHTPLHIAAREGHVETVLALLEK 135

Query: 244 GASRMSLNCNGWLPLDVA 261
            AS+  +   G+ PL VA
Sbjct: 136 EASQACMTKKGFTPLHVA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (332), Expect = 1e-33
 Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 58/202 (28%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PLH  A +GH  +  +L+++G  V++    G T L  A  YG+ ++V+ LL  + +V   
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
               G + LH AA  GH   + L++   A                               
Sbjct: 341 TK-LGYSPLHQAAQQGHTDIVTLLLKNGAS------------------------------ 369

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GST 223
                  N+ +  G T L +A   GY     +L  +            + + +      +
Sbjct: 370 ------PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE--------TSFVLVSDKHRMS 415

Query: 224 PLHFAACGGNLKCCQVLLSRGA 245
                           +L    
Sbjct: 416 FPETV---------DEILDVSE 428

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  169 bits (432), Expect = 5e-49
 Identities = 63/272 (23%), Positives = 103/272 (37%), Gaps = 47/272 (17%)

Query: 17  AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           A   GD  E   LL    D N          GL + LH A    + ++V  L+ENGA++N
Sbjct: 47  ACSSGDTEEVLRLLERGADIN---YA--NVDGL-TALHQACIDDNVDMVKFLVENGANIN 100

Query: 73  SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
             +  G   L  A   G+ ++ + L+    +V   +   G T L  A             
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEEAME------- 152

Query: 133 ADFVPSVPFEVMNTQIEGDRGDGSS---VKSKCDQSALSKF-------VNKAADGGITAL 182
                    E++  ++     D  +    + +       ++         + A  G TAL
Sbjct: 153 ---------ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL 203

Query: 183 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 242
           H+AA  GY + ++LL+    +V+   +           G TPLH AA  G  + C++L+ 
Sbjct: 204 HVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVE 253

Query: 243 RGASRMSLNCNGWLPLDVARMWGRHWLEPLLA 274
                 ++N  G    DVA      +LE L  
Sbjct: 254 NLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  156 bits (397), Expect = 5e-44
 Identities = 53/242 (21%), Positives = 82/242 (33%), Gaps = 59/242 (24%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            +    A + G  E V  LLE GAD+N  N  G TAL QAC   + ++V+ L+    N+ 
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
           + D   G   LH AA  G++     ++   A                             
Sbjct: 101 QPDN-EGWIPLHAAASCGYLDIAEYLISQGAH---------------------------- 131

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLI--- 218
                   V      G T L +A      + +Q  ++    ++ A        + L    
Sbjct: 132 --------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-ARKEEERIMLRDAR 182

Query: 219 ------GA--------GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMW 264
                           G T LH AA  G  +  ++L+         + +GW PL  A  W
Sbjct: 183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242

Query: 265 GR 266
           G+
Sbjct: 243 GK 244

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  130 bits (330), Expect = 1e-34
 Identities = 39/200 (19%), Positives = 62/200 (31%), Gaps = 51/200 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
                   G    +   +        +        + AC  G  E V  LL    ++  A
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLLERGADINYA 69

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           +   G TALH A ++ +V  ++ +V   A+                              
Sbjct: 70  NV-DGLTALHQACIDDNVDMVKFLVENGAN------------------------------ 98

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
                 +N+  + G   LH AA  GY D  + L+   A+V AV             G TP
Sbjct: 99  ------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE----------GDTP 142

Query: 225 LHFAACGGNLKCCQVLLSRG 244
           L  A      +  Q  ++R 
Sbjct: 143 LDIAEEEAMEELLQNEVNRQ 162

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  116 bits (293), Expect = 2e-29
 Identities = 38/204 (18%), Positives = 62/204 (30%), Gaps = 58/204 (28%)

Query: 46  NSPLHFAAAKGHNEIVALLL-ENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           ++PL  A  +   E++   +   G D+         A  +  R    +  Q L     N 
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIE-------AARKEEERIMLRDARQWLNSGHIND 192

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
            R    SG TALH AA  G+   ++L++    D                           
Sbjct: 193 VRHAK-SGGTALHVAAAKGYTEVLKLLIQARYD--------------------------- 224

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
                    VN     G T LH AA  G  +  ++L++   ++ AV             G
Sbjct: 225 ---------VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV----------G 265

Query: 222 STPLHFAACGGNLKCCQVLLSRGA 245
            T    A         ++   +  
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  106 bits (268), Expect = 5e-26
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 51/194 (26%)

Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           +   +   +         G    ++  ++ R                 A  +G    +  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLR 58

Query: 131 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 187
           ++   AD                                    +N A   G+TALH A +
Sbjct: 59  LLERGAD------------------------------------INYANVDGLTALHQACI 82

Query: 188 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 247
           +   D V+ L++  AN++               G  PLH AA  G L   + L+S+GA  
Sbjct: 83  DDNVDMVKFLVENGANINQPDNE----------GWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 248 MSLNCNGWLPLDVA 261
            ++N  G  PLD+A
Sbjct: 133 GAVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  102 bits (258), Expect = 1e-24
 Identities = 30/165 (18%), Positives = 46/165 (27%), Gaps = 40/165 (24%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           + +           +    L     +       G TAL  A   G+ EV++ L+  R +V
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
              DY  G T LH AA  G     R++V    D                           
Sbjct: 226 NIKDY-DGWTPLHAAAHWGKEEACRILVENLCD--------------------------- 257

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 206
                    +      G TA  +A  +      +L    +   S 
Sbjct: 258 ---------MEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  164 bits (418), Expect = 1e-48
 Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 50/201 (24%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            +H  AA+G    +A  +E    +N  +  G T LM A  +G   VV+ LL    +    
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
                 +AL  A   G+   +++++    D                              
Sbjct: 66  GK-GRESALSLACSKGYTDIVKMLLDCGVD------------------------------ 94

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
                 VN+    G T L  A    +  CV++LL+  A+ +  T           +G   
Sbjct: 95  ------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET----------DSGYNS 138

Query: 225 LHFAACGGNLKCCQVLLSRGA 245
           +  A   G     QV+ S   
Sbjct: 139 MDLAVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  137 bits (349), Expect = 1e-38
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 42/196 (21%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           +   A  G+ +     ++    +      G   +PL +AAA G   +V  LL+NGAD   
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEG--FTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV- 132
                ++AL  AC  G+ ++V+ LL    +V   D+ +G T L +A    HV+C+++++ 
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLE 123

Query: 133 --ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
             AD                                         D G  ++ +A   GY
Sbjct: 124 SGAD------------------------------------PTIETDSGYNSMDLAVALGY 147

Query: 191 FDCVQLLLDLHANVSA 206
               Q++      +  
Sbjct: 148 RSVQQVIESHLLKLLQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  125 bits (317), Expect = 4e-34
 Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 50/191 (26%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---AD 134
              ++ Q    G    + T +     +   D   G T L +AA +G +  +  ++   AD
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 194
                                                     G  +AL +A   GY D V
Sbjct: 62  ------------------------------------PQLLGKGRESALSLACSKGYTDIV 85

Query: 195 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 254
           ++LLD   +V+   ++          G TPL +A  G ++KC ++LL  GA       +G
Sbjct: 86  KMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135

Query: 255 WLPLDVARMWG 265
           +  +D+A   G
Sbjct: 136 YNSMDLAVALG 146

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.3 bits (215), Expect = 4e-20
 Identities = 25/154 (16%), Positives = 41/154 (26%), Gaps = 49/154 (31%)

Query: 111 SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
           +   ++H  A  G +  +   +                                      
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV--------------------------------- 28

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
              +N   + G T L  AA +G    V+ LL   A+   +               + L  
Sbjct: 29  ---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG----------RESALSL 75

Query: 228 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           A   G     ++LL  G      + NG  PL  A
Sbjct: 76  ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 51.2 bits (124), Expect = 7e-08
 Identities = 3/28 (10%), Positives = 10/28 (35%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRN 75
            +  A A G+  +  ++  +   +    
Sbjct: 138 SMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.9 bits (118), Expect = 5e-07
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           GA S  +H  A  G +      + +       +  G+ PL  A
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA 43

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  167 bits (426), Expect = 3e-48
 Identities = 50/219 (22%), Positives = 78/219 (35%), Gaps = 52/219 (23%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            SPLH A   GH   V +LL++GA VN       T L  AC  G W+ V  LL    +V 
Sbjct: 93  VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
                   + +H AA  GHV C+  ++    +                            
Sbjct: 153 PESD--LASPIHEAARRGHVECVNSLIAYGGN---------------------------- 182

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
                   ++       T L++A  N    CV+ LL+  A+V+                 
Sbjct: 183 --------IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-----------QD 223

Query: 223 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           +PLH      + +   +L+  GA   + N  G  P+++ 
Sbjct: 224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  162 bits (413), Expect = 2e-46
 Identities = 51/220 (23%), Positives = 71/220 (32%), Gaps = 56/220 (25%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           SP+H AA  GH   +  L+  G  VN       + L +AC  GH   V+ LL     V  
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
                  T L  A V+G   C+ L++   A                              
Sbjct: 121 VTA-DWHTPLFNACVSGSWDCVNLLLQHGAS----------------------------- 150

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                  V   +D   + +H AA  G+ +CV  L+    N+     H            T
Sbjct: 151 -------VQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISH----------LGT 192

Query: 224 PLHFAACGGNLKCCQVLLSRGASRMSLN--CNGWLPLDVA 261
           PL+ A       C + LL  GA    +N       PL   
Sbjct: 193 PLYLACENQQRACVKKLLESGA---DVNQGKGQDSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  149 bits (378), Expect = 2e-41
 Identities = 42/204 (20%), Positives = 66/204 (32%), Gaps = 53/204 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
           ++PL  A   G  + V LLL++GA V   +    + + +A R GH E V +L+ +  N+ 
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNID 184

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
                   T L+ A  N    C++ ++   AD                            
Sbjct: 185 HKIS-HLGTPLYLACENQQRACVKKLLESGAD---------------------------- 215

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
                   VN+      + LH        +   LL+D  A+  A              G 
Sbjct: 216 --------VNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQAKNAE----------GK 256

Query: 223 TPLHFAACGGNLKCCQVLLSRGAS 246
            P+        L     L   GAS
Sbjct: 257 RPVELVPPESPLAQL-FLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  139 bits (354), Expect = 5e-38
 Identities = 45/252 (17%), Positives = 82/252 (32%), Gaps = 63/252 (25%)

Query: 17  AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
            +       +  L+           K     G   P       G       LL N    +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGS-KPAGPRDFPGI-----RLLSNPLMGD 55

Query: 73  SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
           + +    + + +A  +GH   ++ L+     V         + LH A + GH+ C+++++
Sbjct: 56  AVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKILL 112

Query: 133 ---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189
              A                                     VN       T L  A ++G
Sbjct: 113 KHGAQ------------------------------------VNGVTADWHTPLFNACVSG 136

Query: 190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249
            +DCV LLL   A+V   +             ++P+H AA  G+++C   L++ G +   
Sbjct: 137 SWDCVNLLLQHGASVQPESD-----------LASPIHEAARRGHVECVNSLIAYGGNIDH 185

Query: 250 LNCNGWLPLDVA 261
              +   PL +A
Sbjct: 186 KISHLGTPLYLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  117 bits (296), Expect = 5e-30
 Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 44/163 (26%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            SP+H AA +GH E V  L+  G +++ +     T L  AC       V+ LL    +V 
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
           +       + LH            L++   AD                            
Sbjct: 218 QGKG--QDSPLHAVVRTASEELACLLMDFGAD---------------------------- 247

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANV 204
                          G   + +          QL L+   A++
Sbjct: 248 --------TQAKNAEGKRPVELVPPES--PLAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 184 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243
           M + + +      L+   ++++++       MD    GS P       G       LLS 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMD-GKQGGMD----GSKPAGPRDFPGIR-----LLSN 50

Query: 244 GASRMSLNCNGWLPLDVA 261
               M    + W P+  A
Sbjct: 51  PL--MGDAVSDWSPMHEA 66

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 4/27 (14%), Positives = 7/27 (25%), Gaps = 1/27 (3%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVN 72
             P+     +        L   GA + 
Sbjct: 256 KRPVELVPPESP-LAQLFLEREGASLP 281

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  163 bits (415), Expect = 4e-48
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 52/219 (23%)

Query: 43  GGLNSPLHFAAAKGHNEIVALLLENGAD-VNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
           G  +  +H  AA+G  + +   L  G + VN  +  G T L+ A  +G  E V+ LL + 
Sbjct: 1   GD-SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSV 158
            +          +AL  A+  G+   + L++    D                        
Sbjct: 60  ADPHILAK-ERESALSLASTGGYTDIVGLLLERDVD------------------------ 94

Query: 159 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI 218
                       +N     G T L  A    +  CV+ LL   A+++             
Sbjct: 95  ------------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA---------- 132

Query: 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 257
            +G TP+  A   G  K  QV+ +        N     P
Sbjct: 133 DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  137 bits (347), Expect = 2e-38
 Identities = 44/196 (22%), Positives = 71/196 (36%), Gaps = 41/196 (20%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           +   A  G+  + K  L     L       G   PL +A+A G  E V  LLE GAD + 
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFT-PLIWASAFGEIETVRFLLEWGADPHI 64

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV- 132
                ++AL  A   G+ ++V  LL    ++   D+ +G T L +A    HV+C+  ++ 
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLA 123

Query: 133 --ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
             AD                                    +   AD G T + +A   GY
Sbjct: 124 RGAD------------------------------------LTTEADSGYTPMDLAVALGY 147

Query: 191 FDCVQLLLDLHANVSA 206
               Q++ +    +  
Sbjct: 148 RKVQQVIENHILKLFQ 163

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 89.4 bits (223), Expect = 4e-21
 Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 48/153 (31%)

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
              ++H  A  G +  ++  +    + V                                
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLV-------------------------------- 29

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228
              NK  + G T L  A+  G  + V+ LL+  A+   +               + L  A
Sbjct: 30  ---NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE----------RESALSLA 76

Query: 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           + GG      +LL R       + NG  PL  A
Sbjct: 77  STGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 85.5 bits (213), Expect = 1e-19
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A+  G      +LL+ +  +  Y   G   +PL +A    H + V  LL  GAD+ +
Sbjct: 73  LSLASTGGYTDIVGLLLERDVDINIYDWNG--GTPLLYAVRGNHVKCVEALLARGADLTT 130

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRT 114
               G T +  A   G+ +V Q +      + +++      
Sbjct: 131 EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL-VPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 72.4 bits (179), Expect = 4e-15
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 17/89 (19%)

Query: 177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA----GSTPLHFAACGG 232
           G   ++H  A  G  D ++  L                 +L+      G TPL +A+  G
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGD-------------NLVNKPDERGFTPLIWASAFG 47

Query: 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            ++  + LL  GA    L       L +A
Sbjct: 48  EIETVRFLLEWGADPHILAKERESALSLA 76

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  164 bits (419), Expect = 7e-48
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 53/260 (20%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           +V A + G +   + L++    + +        + LH+AA     ++V   +  GA V+ 
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQPDKEN--VTLLHWAAINNRIDLVKYYISKGAIVDQ 70

Query: 74  R-NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
                  T L  A R GH  +V  L+ +  + +  D   G + +H AA  GH   +  ++
Sbjct: 71  LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLI 129

Query: 133 ---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189
               D                                    V+     G+T L  AA   
Sbjct: 130 AKGQD------------------------------------VDMMDQNGMTPLMWAAYRT 153

Query: 190 Y-FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 248
           +  D  +LLL  + +V+    ++          +T LH+A   GN     +LL  GA+  
Sbjct: 154 HSVDPTRLLLTFNVSVNLGDKYH---------KNTALHWAVLAGNTTVISLLLEAGANVD 204

Query: 249 SLNCNGWLPLDVARMWGRHW 268
           + N  G   LD+A+     W
Sbjct: 205 AQNIKGESALDLAKQRKNVW 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  154 bits (393), Expect = 4e-44
 Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 51/219 (23%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            +  A   G  E    L+E G DV   +    T L  A      ++V+  +     V + 
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
                 T LH+A   GH+  +  ++   AD                              
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGAD------------------------------ 101

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
                  +     G + +H+AA  G+   V  L+    +V  +  +          G TP
Sbjct: 102 ------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN----------GMTP 145

Query: 225 LHFAACGGN-LKCCQVLLSRGASR-MSLNCNGWLPLDVA 261
           L +AA   + +   ++LL+   S  +    +    L  A
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  150 bits (382), Expect = 2e-42
 Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 42/200 (21%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PLH+A  +GH  +V  L++ GAD +  +  G + +  A ++GH  +V  L+    +V   
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
           D  +G T L +AA   H     +     + +                  SV         
Sbjct: 139 DQ-NGMTPLMWAAYRTH----SVDPTRLLLTF---------------NVSVNLGDK---- 174

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
                       TALH A L G    + LLL+  ANV A              G + L  
Sbjct: 175 --------YHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK----------GESALDL 216

Query: 228 AACGGNLKCCQVLLSRGASR 247
           A    N+     L     ++
Sbjct: 217 AKQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  131 bits (332), Expect = 2e-35
 Identities = 39/165 (23%), Positives = 57/165 (34%), Gaps = 40/165 (24%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW-EVVQTLLLFRCNV 104
            S +H AA  GH  IVA L+  G DV+  +  G T LM A    H  +  + LL F  +V
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
              D     TALH+A + G+   I L++   A+                           
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN--------------------------- 202

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 206
                    V+     G +AL +A        +  L +       
Sbjct: 203 ---------VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  123 bits (311), Expect = 2e-32
 Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 52/205 (25%)

Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           +   +      +++A +YG +E  + L+    +V + D     T LH+AA+N  +  ++ 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNRIDLVKY 60

Query: 131 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAA 186
            +   A                                     V+    D   T LH A 
Sbjct: 61  YISKGAI------------------------------------VDQLGGDLNSTPLHWAT 84

Query: 187 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246
             G+   V  L+   A+ S +             G + +H AA  G+      L+++G  
Sbjct: 85  RQGHLSMVVQLMKYGADPSLIDGE----------GCSCIHLAAQFGHTSIVAYLIAKGQD 134

Query: 247 RMSLNCNGWLPLDVARMWGRHWLEP 271
              ++ NG  PL  A     H ++P
Sbjct: 135 VDMMDQNGMTPLMWAAYRT-HSVDP 158

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 91.7 bits (229), Expect = 3e-21
 Identities = 32/159 (20%), Positives = 50/159 (31%), Gaps = 43/159 (27%)

Query: 103 NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
           ++T  D       +  A   G     R +V                  + G         
Sbjct: 1   HMTHIDD-YSTWDIVKATQYGIYERCRELV------------------EAG--------Y 33

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
           D       V +     +T LH AA+N   D V+  +   A V  +              S
Sbjct: 34  D-------VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL---------NS 77

Query: 223 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           TPLH+A   G+L     L+  GA    ++  G   + +A
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 86.7 bits (216), Expect = 2e-19
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 14  LVSAARDGDFVE-AKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           L+ AA     V+  ++LL  N  +     +   N+ LH+A   G+  +++LLLE GA+V+
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK-NTALHWAVLAGNTTVISLLLEAGANVD 204

Query: 73  SRNYCGQTALMQACRYGHWEVVQTLL 98
           ++N  G++AL  A +  +  ++  L 
Sbjct: 205 AQNIKGESALDLAKQRKNVWMINHLQ 230

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 5/28 (17%), Positives = 9/28 (32%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRN 75
            L  A  + +  ++  L E        N
Sbjct: 213 ALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  163 bits (416), Expect = 2e-47
 Identities = 60/230 (26%), Positives = 89/230 (38%), Gaps = 51/230 (22%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCNVTR 106
           PL  AA   H E V  L++ GA V+ ++  G T L  A + GH+EVVQ LL   + +V  
Sbjct: 47  PLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
            D   G T + +A    HV  ++L++   +D                             
Sbjct: 107 QDD-GGWTPMIWATEYKHVDLVKLLLSKGSD----------------------------- 136

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                  +N   +     LH AA +G  D  ++LL    ++ AV  H          G +
Sbjct: 137 -------INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH----------GDS 179

Query: 224 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           PLH AA      C  + LSR +     N  G  PL  A +  + W    +
Sbjct: 180 PLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  159 bits (404), Expect = 1e-45
 Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 43/222 (19%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            SPLH AA  GH +I  +L++ GA++++ +   +T LM+A    H E V+ L+     V 
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
             D   G T LH AA  GH   ++ ++                                S
Sbjct: 72  PKDA-EGSTCLHLAAKKGHYEVVQYLL--------------------------------S 98

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
                VN   DGG T +  A    + D V+LLL   ++++                +  L
Sbjct: 99  NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE----------ENICL 148

Query: 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           H+AA  G +   ++LL+      ++N +G  PL +A    R+
Sbjct: 149 HWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  146 bits (372), Expect = 3e-41
 Identities = 48/204 (23%), Positives = 76/204 (37%), Gaps = 51/204 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           ++ LH AA KGH E+V  LL NG  DVN ++  G T ++ A  Y H ++V+ LL    ++
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI 137

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
              D       LH+AA +G V    +++    D                           
Sbjct: 138 NIRDN-EENICLHWAAFSGCVDIAEILLAAKCD--------------------------- 169

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
                    ++     G + LH+AA    +DCV L L   ++V+               G
Sbjct: 170 ---------LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE----------G 210

Query: 222 STPLHFAACGGNLKCCQVLLSRGA 245
            TPL  A+    +     +     
Sbjct: 211 ETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  124 bits (314), Expect = 7e-33
 Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 40/159 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           P+ +A    H ++V LLL  G+D+N R+      L  A   G  ++ + LL  +C++   
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV 173

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           +   G + LH AA      C+ L +   +D                              
Sbjct: 174 NI-HGDSPLHIAARENRYDCVVLFLSRDSD------------------------------ 202

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 203
                 V      G T L  A+LN        +     +
Sbjct: 203 ------VTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  122 bits (308), Expect = 5e-32
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 51/197 (25%)

Query: 69  ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCI 128
            +    +   ++ L  A   GH ++   L+    N+        RT L  AA N H+  +
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAV 60

Query: 129 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 185
           + ++   A                                     V+     G T LH+A
Sbjct: 61  KYLIKAGAL------------------------------------VDPKDAEGSTCLHLA 84

Query: 186 ALNGYFDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
           A  G+++ VQ LL     +V+               G TP+ +A    ++   ++LLS+G
Sbjct: 85  AKKGHYEVVQYLLSNGQMDVNCQDDG----------GWTPMIWATEYKHVDLVKLLLSKG 134

Query: 245 ASRMSLNCNGWLPLDVA 261
           +     +    + L  A
Sbjct: 135 SDINIRDNEENICLHWA 151

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  162 bits (413), Expect = 5e-47
 Identities = 57/226 (25%), Positives = 81/226 (35%), Gaps = 55/226 (24%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLL----LFRCN 103
           PLH A       +V LL+  GA   + +  GQTA   AC +     ++ LL        +
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108

Query: 104 VTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
           +   +Y  G TALH A        ++L++   AD                          
Sbjct: 109 LEARNY-DGLTALHVAVNTECQETVQLLLERGAD-------------------------- 141

Query: 161 KCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIG 219
                     ++      G + L  A  N     VQLLL   ANV+A  +          
Sbjct: 142 ----------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS--------- 182

Query: 220 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
            GS+ LH A+  G L   + L+  GA     NC+   PL VAR   
Sbjct: 183 -GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  156 bits (396), Expect = 2e-44
 Identities = 53/221 (23%), Positives = 83/221 (37%), Gaps = 45/221 (20%)

Query: 46  NSPLHFAAAKGHNEIVALLLE----NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
           ++PLH A  +G+   V  L+      G +++  N   QT L  A       VV+ L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
            +    D   G+TA H A  +    C+R ++                             
Sbjct: 70  ASPMALDR-HGQTAAHLACEHRSPTCLRALL----------------------------- 99

Query: 162 CDQSALSKF-VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA 220
            D +A     +      G+TALH+A      + VQLLL+  A++ AV             
Sbjct: 100 -DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS--------- 149

Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           G +PL  A    +L   Q+LL  GA+  +   +G   L  A
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  152 bits (388), Expect = 2e-43
 Identities = 48/208 (23%), Positives = 71/208 (34%), Gaps = 53/208 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGA----DVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
            +  H A        +  LL++ A    D+ +RNY G TAL  A      E VQ LL   
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139

Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSV 158
            ++   D  SGR+ L  A  N  +  ++L++   A+                        
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------------------------ 175

Query: 159 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI 218
                       VN     G +ALH A+  G    V+ L+   A+ S    H        
Sbjct: 176 ------------VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH-------- 215

Query: 219 GAGSTPLHFAACGGNLKCCQVLLSRGAS 246
               TPL  A     +   +   +R AS
Sbjct: 216 --NDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  105 bits (265), Expect = 4e-26
 Identities = 40/206 (19%), Positives = 61/206 (29%), Gaps = 65/206 (31%)

Query: 71  VNSRNYCGQTALMQACRYGHWEVVQTLLLFRC----NVTRADYLSGRTALHFAAVNGHVR 126
               +  G T L  A   G+   V  L+         +   +    +T LH A +     
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPS 60

Query: 127 CIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183
            +RL+V   A                                            G TA H
Sbjct: 61  VVRLLVTAGAS------------------------------------PMALDRHGQTAAH 84

Query: 184 MAALNGYFDCVQLLLD----LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
           +A  +    C++ LLD       ++ A  +           G T LH A      +  Q+
Sbjct: 85  LACEHRSPTCLRALLDSAAPGTLDLEARNYD----------GLTALHVAVNTECQETVQL 134

Query: 240 LLSRGASRMSLN----CNGWLPLDVA 261
           LL RGA    ++     +G  PL  A
Sbjct: 135 LLERGA---DIDAVDIKSGRSPLIHA 157

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  161 bits (411), Expect = 9e-47
 Identities = 51/220 (23%), Positives = 79/220 (35%), Gaps = 41/220 (18%)

Query: 46  NSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
           +S LH A          E++  +  + A +N +N   QT L  A      E+ + LL   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
           C+    D+  G T LH A   G +  + ++                              
Sbjct: 69  CDPELRDF-RGNTPLHLACEQGCLASVGVLT---------------------------QS 100

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
           C    L   +      G T LH+A+++GY   V+LL+ L A+V+A              G
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN---------G 151

Query: 222 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            T LH A    N     +LL  GA    +   G+ P  + 
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  157 bits (400), Expect = 3e-45
 Identities = 51/216 (23%), Positives = 71/216 (32%), Gaps = 55/216 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PLH A      EI   LL  G D   R++ G T L  AC  G    V  L          
Sbjct: 48  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107

Query: 108 DYL-----SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVK 159
             L     +G T LH A+++G++  + L+V   AD                         
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------------------- 142

Query: 160 SKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI 218
                      VN +    G TALH+A      D V LLL   A+V+ VT+         
Sbjct: 143 -----------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ-------- 183

Query: 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 254
             G +P        + +  Q L       + +    
Sbjct: 184 --GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  124 bits (315), Expect = 4e-33
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 55/193 (28%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGAD------VNSRNYCGQTALMQACRYGHWEVVQTLLL 99
           N+PLH A  +G    V +L ++         + + NY G T L  A  +G+  +V+ L+ 
Sbjct: 79  NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138

Query: 100 FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGS 156
              +V   +  +GRTALH A    +   + L++   AD                      
Sbjct: 139 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---------------------- 176

Query: 157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMD 216
                         VN+    G +   +          Q L  L      +         
Sbjct: 177 --------------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE------ 216

Query: 217 LIGAGSTPLHFAA 229
                     +  
Sbjct: 217 ----SEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  104 bits (262), Expect = 1e-25
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 12/122 (9%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNS-------PLHFAAAKGHNEIVALLLENGA 69
           A   G      +L               L +        LH A+  G+  IV LL+  GA
Sbjct: 85  ACEQGCLASVGVLTQSC---TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141

Query: 70  DVNSR-NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCI 128
           DVN++    G+TAL  A    + ++V  LL    +V R  Y  G +           R  
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRIQ 200

Query: 129 RL 130
           + 
Sbjct: 201 QQ 202

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =   99 bits (250), Expect = 3e-24
 Identities = 37/195 (18%), Positives = 59/195 (30%), Gaps = 55/195 (28%)

Query: 78  GQTALMQACRYGH----WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV- 132
           G + L  A  +       EV++ +      +   + L  +T LH A +         ++ 
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLG 66

Query: 133 --ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
              D                                           G T LH+A   G 
Sbjct: 67  AGCD------------------------------------PELRDFRGNTPLHLACEQGC 90

Query: 191 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250
              V +L          +    T+ +    G T LH A+  G L   ++L+S GA    +
Sbjct: 91  LASVGVLTQSCTTPHLHSILKATNYN----GHTCLHLASIHGYLGIVELLVSLGA---DV 143

Query: 251 N----CNGWLPLDVA 261
           N    CNG   L +A
Sbjct: 144 NAQEPCNGRTALHLA 158

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 91.8 bits (229), Expect = 3e-21
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           + LH A    + ++V+LLL+ GADVN   Y G +            + Q L        +
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212

Query: 107 ADYLSGRTALHFAAVNGH 124
                      +   +  
Sbjct: 213 MLP-ESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 4/79 (5%)

Query: 17  AARDGDFVEAKMLLDCNPCL-AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN 75
           A    +     +LL C   +     T+ G  SP      +    I   L +   +     
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRV--TYQG-YSPYQLTWGRPSTRIQQQLGQLTLENLQML 214

Query: 76  YCGQTALMQACRYGHWEVV 94
              +            E  
Sbjct: 215 PESEDEESYDTESEFTEFT 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  159 bits (405), Expect = 9e-46
 Identities = 55/224 (24%), Positives = 76/224 (33%), Gaps = 51/224 (22%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR-CNVTR 106
            LH AA    ++    LLE  AD N ++  G+T L  A       V Q L+  R  ++  
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
             +  G T L  AA       +  ++   AD                             
Sbjct: 120 RMH-DGTTPLILAARLAVEGMLEDLINSHAD----------------------------- 149

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                  VN   D G +ALH AA     D   +LL   AN                   T
Sbjct: 150 -------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EET 192

Query: 224 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           PL  AA  G+ +  +VLL   A+R   +    LP D+A+    H
Sbjct: 193 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 236

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  144 bits (365), Expect = 6e-40
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 51/204 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
            +PLH A +     +  +L+ N A D+++R + G T L+ A R     +++ L+    +V
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
              D   G++ALH+AA   +V    +++   A+                           
Sbjct: 151 NAVDD-LGKSALHWAAAVNNVDAAVVLLKNGAN--------------------------- 182

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
                     +   +   T L +AA  G ++  ++LLD  AN      H           
Sbjct: 183 ---------KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD-HM---------D 223

Query: 222 STPLHFAACGGNLKCCQVLLSRGA 245
             P   A    +    ++L     
Sbjct: 224 RLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  141 bits (359), Expect = 5e-39
 Identities = 51/223 (22%), Positives = 78/223 (34%), Gaps = 44/223 (19%)

Query: 40  STFGGLNSPLHFAAAKGHNEIVALLLENGADV-NSRNYCGQTALMQACRYGHWEVVQTLL 98
           S  GG     +    +    +++  +  GA + N  +  G+TAL  A RY   +  + LL
Sbjct: 18  SCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL 77

Query: 99  LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSV 158
               +    D   GRT LH A                       V    I     D    
Sbjct: 78  EASADANIQDN-MGRTPLHAAVSADAQ----------------GVFQILIRNRATD---- 116

Query: 159 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI 218
                       ++     G T L +AA       ++ L++ HA+V+AV           
Sbjct: 117 ------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-------- 156

Query: 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
             G + LH+AA   N+    VLL  GA++   N     PL +A
Sbjct: 157 --GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (307), Expect = 1e-31
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 40/159 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PL  AA      ++  L+ + ADVN+ +  G++AL  A    + +    LL    N    
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           +     T L  AA  G     ++++   A+                              
Sbjct: 187 NN-REETPLFLAAREGSYETAKVLLDHFAN------------------------------ 215

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 203
                  +           +A    + D V+LL   H +
Sbjct: 216 ------RDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  101 bits (253), Expect = 2e-24
 Identities = 41/209 (19%), Positives = 61/209 (29%), Gaps = 63/209 (30%)

Query: 70  DVNSRNYCGQTALMQACRYGHW-------------EVVQTLLLFRCNVTRADYLSGRTAL 116
           DVN R   G T LM A   G                V+   +    ++      +G TAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 117 HFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK 173
           H AA        + ++   AD                                     N 
Sbjct: 62  HLAARYSRSDAAKRLLEASAD------------------------------------ANI 85

Query: 174 AADGGITALHMAALNGYFDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232
             + G T LH A         Q+L+   A ++ A              G+TPL  AA   
Sbjct: 86  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD----------GTTPLILAARLA 135

Query: 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
                + L++  A   +++  G   L  A
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWA 164

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRN 75
           P   A  + H++IV LL       +  +
Sbjct: 226 PRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  163 bits (414), Expect = 9e-46
 Identities = 26/222 (11%), Positives = 64/222 (28%), Gaps = 36/222 (16%)

Query: 46  NSPLHFAAAKGHNEIVALLLE-----NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF 100
            +PL  A    + E + L+++     +   ++  N  G + L  A      +V    +  
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

Query: 101 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 160
             +V   D       L+ +     V   + ++                   + D   +++
Sbjct: 234 GIDVNMEDN-EHTVPLYLSVRAAMVLLTKELL------------------QKTDVFLIQA 274

Query: 161 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA 220
               +  +  V       +  +  AA     + +QLL +    V                
Sbjct: 275 CPYHNGTT--VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNT---------- 322

Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
           G+               ++ L+  A   + + +      V++
Sbjct: 323 GAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  154 bits (392), Expect = 1e-42
 Identities = 33/229 (14%), Positives = 70/229 (30%), Gaps = 42/229 (18%)

Query: 48  PLHFAAAKGHN--EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            LH+    G    E++ +L++ GA   +++   +T LM+A  + + E +  ++    + +
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200

Query: 106 RAD----YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
                     G + LH+A +                    +V    +E            
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWE----------------DVAMRFVE----------MG 234

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA--NVSAVTFHYG-TSMDLI 218
            D       VN   +     L+++         + LL       + A  +H G T +   
Sbjct: 235 ID-------VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
                 +  AA     +  Q+L  +    +     G       +     
Sbjct: 288 VVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAP 336

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  144 bits (365), Expect = 8e-39
 Identities = 37/218 (16%), Positives = 63/218 (28%), Gaps = 60/218 (27%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
              +H AA KG  + V  L+E G     +N  G TAL  AC++G  +  + L       +
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
                 G+  +H A +      +                                     
Sbjct: 81  LWH---GQKPIHLAVMANKTDLVVA----------------------------------- 102

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
                V  A + G     +       +  ++   +                    G T L
Sbjct: 103 ----LVEGAKERGQMPESLLNECDEREVNEIGSHVKHC----------------KGQTAL 142

Query: 226 HFAACGGN--LKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           H+    G   L+  ++L+  GAS  + +     PL  A
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRA 180

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  134 bits (340), Expect = 2e-35
 Identities = 44/252 (17%), Positives = 73/252 (28%), Gaps = 67/252 (26%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           AAR G   E + L++        + FG   + LH A   G  +    L   G   +  + 
Sbjct: 27  AARKGQTDEVRRLIETGVSPTIQNRFG--CTALHLACKFGCVDTAKYLASVGEVHSLWH- 83

Query: 77  CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV 136
            GQ  +  A      ++V   L+        +   G+                       
Sbjct: 84  -GQKPIHLAVMANKTDLVV-ALVEGA----KER--GQMPESLLNECDER----------- 124

Query: 137 PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG--YFDCV 194
                EV                 +          +     G TALH     G  Y + +
Sbjct: 125 -----EVN----------------EIG-------SHVKHCKGQTALHWCVGLGPEYLEMI 156

Query: 195 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN- 253
           ++L+ L A+ +A                TPL  A    N +   +++    S+ SL  + 
Sbjct: 157 KILVQLGASPTAKDKA----------DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206

Query: 254 ----GWLPLDVA 261
               G   L  A
Sbjct: 207 ANKQGNSHLHWA 218

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  126 bits (319), Expect = 2e-32
 Identities = 30/221 (13%), Positives = 55/221 (24%), Gaps = 59/221 (26%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
             P+H A      ++V  L+E   +       GQ            EV +          
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNECDEREVNE------IGSH 132

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
                 G+TALH+    G                  E++   ++   G            
Sbjct: 133 VKHC-KGQTALHWCVGLGPEY--------------LEMIKILVQ--LG--------AS-- 165

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-----ANVSAVTFHYGTSMDLIGA 220
                         T L  A      + + L++D         +                
Sbjct: 166 -----PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ---------- 210

Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           G++ LH+A            +  G      +    +PL ++
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 18/103 (17%)

Query: 164 QSALSKF----VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIG 219
             +++ F      K+ D  +  +H+AA  G  D V+ L++   + +              
Sbjct: 2   PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF--------- 52

Query: 220 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDVA 261
            G T LH A   G +   + L S G      +  +G  P+ +A
Sbjct: 53  -GCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIHLA 91

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  157 bits (401), Expect = 2e-45
 Identities = 55/224 (24%), Positives = 76/224 (33%), Gaps = 51/224 (22%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR-CNVTR 106
            LH AA    ++    LLE  AD N ++  G+T L  A       V Q L+  R  ++  
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
             +  G T L  AA       +  ++   AD                             
Sbjct: 88  RMH-DGTTPLILAARLAVEGMLEDLINSHAD----------------------------- 117

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                  VN   D G +ALH AA     D   +LL   AN                   T
Sbjct: 118 -------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EET 160

Query: 224 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           PL  AA  G+ +  +VLL   A+R   +    LP D+A+    H
Sbjct: 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  143 bits (363), Expect = 5e-40
 Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 51/204 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           PLH A +     +  +L+ N A D+++R + G T L+ A R     +++ L+    +V  
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
            D   G++ALH+AA   +V    +++   A+                             
Sbjct: 121 VDD-LGKSALHWAAAVNNVDAAVVLLKNGAN----------------------------- 150

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                   +   +   T L +AA  G ++  ++LLD  AN                    
Sbjct: 151 -------KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM----------DRL 193

Query: 224 PLHFAACGGNLKCCQVLLSRGASR 247
           P   A    +    ++L      R
Sbjct: 194 PRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  131 bits (332), Expect = 1e-35
 Identities = 48/207 (23%), Positives = 73/207 (35%), Gaps = 44/207 (21%)

Query: 56  GHNEIVALLLENGADV-NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRT 114
               +++  +  GA + N  +  G+TAL  A RY   +  + LL    +    D   GRT
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN-MGRT 60

Query: 115 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA 174
            LH A                       V    I     D                ++  
Sbjct: 61  PLHAAVSADAQ----------------GVFQILIRNRATD----------------LDAR 88

Query: 175 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 234
              G T L +AA       ++ L++ HA+V+AV             G + LH+AA   N+
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL----------GKSALHWAAAVNNV 138

Query: 235 KCCQVLLSRGASRMSLNCNGWLPLDVA 261
               VLL  GA++   N     PL +A
Sbjct: 139 DAAVVLLKNGANKDMQNNREETPLFLA 165

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  119 bits (301), Expect = 3e-31
 Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 40/162 (24%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PL  AA      ++  L+ + ADVN+ +  G++AL  A    + +    LL    N    
Sbjct: 95  PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           +     T L  AA  G     ++++   A+                              
Sbjct: 155 NN-REETPLFLAAREGSYETAKVLLDHFAN------------------------------ 183

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 206
                  +           +A    + D V+LL + +   S 
Sbjct: 184 ------RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  105 bits (265), Expect = 3e-26
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            S LH+AAA  + +   +LL+NGA+ + +N   +T L  A R G +E  + LL    N  
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185

Query: 106 RADYLSGRTALHFAAVNGHVRCIRL 130
             D+   R     A    H   +RL
Sbjct: 186 ITDH-MDRLPRDIAQERMHHDIVRL 209

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  157 bits (399), Expect = 5e-45
 Identities = 44/251 (17%), Positives = 72/251 (28%), Gaps = 65/251 (25%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
            +   +DG             D     ++Y T      P   AA K   + ++ LLE   
Sbjct: 19  YLIEWKDGHSPSWVPSSYIAADVV---SEYET------PWWTAARKADEQALSQLLE-DR 68

Query: 70  DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR 129
           DV++ +  G+TAL+     G  + V+ L     ++   D   G TALH AA       + 
Sbjct: 69  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128

Query: 130 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 186
            +V   AD                                    +    + G+TAL +A 
Sbjct: 129 ALVELGAD------------------------------------IEVEDERGLTALELAR 152

Query: 187 LNGYFDCVQLLLDLHANV---------SAVTFHYGTSMDLI---GAGSTPLHFAACGGNL 234
                      +     +             F Y    +++   G G    +        
Sbjct: 153 EILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGG 212

Query: 235 KCCQVLLSRGA 245
            C  V     A
Sbjct: 213 DCEWVKGVHVA 223

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  145 bits (368), Expect = 2e-40
 Identities = 44/222 (19%), Positives = 70/222 (31%), Gaps = 58/222 (26%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
                   GH+          ADV S     +T    A R    + +   LL   +V   
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALS-QLLEDRDVDAV 73

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           D  +GRTAL F A  G  +C+RL+    AD                              
Sbjct: 74  DE-NGRTALLFVAGLGSDKCVRLLAEAGAD------------------------------ 102

Query: 165 SALSKFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                 ++ +   GG+TALHMAA     + V+ L++L A++                G T
Sbjct: 103 ------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED----------ERGLT 146

Query: 224 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
            L  A            +  G     +     + +   +++ 
Sbjct: 147 ALELAREILKTTPKGNPMQFGR---RIGLEKVINVLEGQVFE 185

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  110 bits (278), Expect = 6e-28
 Identities = 35/206 (16%), Positives = 58/206 (28%), Gaps = 52/206 (25%)

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V  ++ +          G    +   + GH            +V         T    AA
Sbjct: 3   VNKIIGSRTAGE-----GAMEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAA 53

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
                + +  +                +E             D       V+   + G T
Sbjct: 54  RKADEQALSQL----------------LED-----------RD-------VDAVDENGRT 79

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
           AL   A  G   CV+LL +  A++                G T LH AA     +  + L
Sbjct: 80  ALLFVAGLGSDKCVRLLAEAGADLDHRDMRG---------GLTALHMAAGYVRPEVVEAL 130

Query: 241 LSRGASRMSLNCNGWLPLDVARMWGR 266
           +  GA     +  G   L++AR   +
Sbjct: 131 VELGADIEVEDERGLTALELAREILK 156

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  106 bits (266), Expect = 3e-26
 Identities = 35/236 (14%), Positives = 59/236 (25%), Gaps = 70/236 (29%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
           +  G +A    L+  A  G     ++L     D +    +    G   + LH AA     
Sbjct: 74  DENGRTA----LLFVAGLGSDKCVRLLAEAGADLD---HRDMRGG--LTALHMAAGYVRP 124

Query: 59  EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
           E+V  L+E GAD+   +  G TAL  A            + F   +           +  
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV----INVLE 180

Query: 119 AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 178
             V  +                 EV                           + +    G
Sbjct: 181 GQVFEYA----------------EVDE-------------------------IVEKRGKG 199

Query: 179 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 234
               ++       DC  +     A   A  +               L +A     +
Sbjct: 200 KDVEYLVRWKDGGDCEWVKGVHVAEDVAKDY------------EDGLEYAVAESVI 243

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  157 bits (400), Expect = 1e-44
 Identities = 53/227 (23%), Positives = 82/227 (36%), Gaps = 42/227 (18%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSR-NYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           N  L  A      ++V  LLE GA+VN +    G T L  A +    ++V+ LL    + 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
                 +G T    AA+ G V+ ++L +   AD                           
Sbjct: 66  VLRKK-NGATPFLLAAIAGSVKLLKLFLSKGAD--------------------------- 97

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
                    VN+    G TA   AA+ G    ++ L    ANV+           L   G
Sbjct: 98  ---------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 222 STPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRH 267
           +T L  AA  G+++  ++LL   GA   + +  G   L  A +    
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  155 bits (395), Expect = 7e-44
 Identities = 62/260 (23%), Positives = 97/260 (37%), Gaps = 54/260 (20%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           L+ A ++ D    + LL    + N    +    G   +PLH A      +IV LLL +GA
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVN---FQEEEGG--WTPLHNAVQMSREDIVELLLRHGA 63

Query: 70  DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR 129
           D   R   G T  + A   G  ++++  L    +V   D+  G TA   AAV G V+ ++
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALK 122

Query: 130 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 186
            +    A+         +N + +                       +   GG TAL  AA
Sbjct: 123 FLYKRGAN---------VNLRRKTKED-----------------QERLRKGGATALMDAA 156

Query: 187 LNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC----QVLL 241
             G+ + +++LLD   A+V+A              G   L  A    +         +LL
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLL 206

Query: 242 SRGASRMSLNCNGWLPLDVA 261
             GA        G  PL +A
Sbjct: 207 DHGADVNVRGERGKTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  148 bits (375), Expect = 5e-41
 Identities = 49/219 (22%), Positives = 69/219 (31%), Gaps = 66/219 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRN----------YCGQTALMQACRYGHWEVVQ 95
            +    AA  G  + +  L + GA+VN R             G TALM A   GH EV++
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 96  TLLLFRC-NVTRADYLSGRTALHFAAVNGHVRCIRLVV-------ADFVPSVPFEVMNTQ 147
            LL     +V   D   GR AL  A ++     +  +        AD             
Sbjct: 166 ILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGAD------------- 211

Query: 148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSA 206
                                  VN   + G T L +A    +   VQ LL+     ++ 
Sbjct: 212 -----------------------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 207 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
                         G T L  A      K  ++L  RGA
Sbjct: 249 TDSD----------GKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  144 bits (366), Expect = 1e-39
 Identities = 57/240 (23%), Positives = 81/240 (33%), Gaps = 64/240 (26%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            +P   AA  G  +++ L L  GADVN  ++ G TA M+A  YG  + ++ L     NV 
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132

Query: 106 RAD---------YLSGRTALHFAAVNGHVRCIRLVV----ADFVPSVPFEVMNTQIEGDR 152
                          G TAL  AA  GHV  +++++    AD                  
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD------------------ 174

Query: 153 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC----VQLLLDLHANVSAVT 208
                             VN   + G  AL  A L+           LLLD  A+V+   
Sbjct: 175 ------------------VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216

Query: 209 FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRH 267
                       G TPL  A    +L   Q LL +        + +G   L +A      
Sbjct: 217 ER----------GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK 266

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  117 bits (297), Expect = 5e-30
 Identities = 46/218 (21%), Positives = 72/218 (33%), Gaps = 52/218 (23%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLL---------DCNPCLAKYSTFGGLNSPLHFAA 53
           + +G +A     + AA  G     K L                 +    GG  + L  AA
Sbjct: 102 DFYGFTA----FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG-ATALMDAA 156

Query: 54  AKGHNEIVALLL-ENGADVNSRNYCGQTALMQACRYGHW----EVVQTLLLFRCNVTRAD 108
            KGH E++ +LL E GADVN+ +  G+ AL+ A           +   LL    +V    
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216

Query: 109 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
              G+T L  A    H+                 ++   +E +  +              
Sbjct: 217 E-RGKTPLILAVEKKHL----------------GLVQRLLEQEHIE-------------- 245

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 206
             +N     G TAL +A         +LL    A+   
Sbjct: 246 --INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 84.4 bits (210), Expect = 2e-18
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 50/154 (32%)

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
               L  A  N  V  ++ ++   A+                                  
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGAN---------------------------------- 30

Query: 169 KFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
             VN +  +GG T LH A      D V+LLL   A+      +          G+TP   
Sbjct: 31  --VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN----------GATPFLL 78

Query: 228 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           AA  G++K  ++ LS+GA     +  G+     A
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 5e-14
 Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 174 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 233
           AA      L  A  N   D VQ LL+  ANV+               G TPLH A     
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG---------GWTPLHNAVQMSR 51

Query: 234 LKCCQVLLSRGASRMSLNCNGWLPLDVA 261
               ++LL  GA  +    NG  P  +A
Sbjct: 52  EDIVELLLRHGADPVLRKKNGATPFLLA 79

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRN 75
            L  A      +I  LL + GA  +  +
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  156 bits (398), Expect = 3e-44
 Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 45/201 (22%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
             PLH AA     +IV +LL +G D +  +  G TAL  A   G+ + V+  +     + 
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM 122

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
                  +T+ + A +   V  +   +                                 
Sbjct: 123 FYGKTGWKTSFYHAVMLNDVSIVSYFL------------------SEIP----------- 153

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP- 224
                        ++ +H+   NG+ D + LLLD   + +                  P 
Sbjct: 154 -----STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL----------LFIPD 198

Query: 225 LHFAACGGNLKCCQVLLSRGA 245
           +  A    +++  Q L     
Sbjct: 199 IKLAIDNKDIEMLQALFKYDI 219

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  156 bits (397), Expect = 3e-44
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 54/215 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
             ++A A  +  +V  LL  GA  N      +  L QA      ++V+ LL    + ++ 
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQF 91

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           D   G TAL++A  +G+++ ++L V                                   
Sbjct: 92  DD-KGNTALYYAVDSGNMQTVKLFVKKNWR------------------------------ 120

Query: 165 SALSKFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                 +      G  T+ + A +      V   L    +   +               +
Sbjct: 121 ------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-----------LLS 163

Query: 224 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 258
            +H     G++    +LL    S  + N   ++P 
Sbjct: 164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  144 bits (367), Expect = 6e-40
 Identities = 31/216 (14%), Positives = 59/216 (27%), Gaps = 54/216 (25%)

Query: 49  LHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD 108
           L        ++ +   L +  D    +  G +A   A    +  +V TLL         +
Sbjct: 4   LS-RINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE 61

Query: 109 YLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
                  LH AA     + +++++    D                               
Sbjct: 62  ---NEFPLHQAATLEDTKIVKILLFSGLD------------------------------- 87

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
                 ++  D G TAL+ A  +G    V+L +  +  +       G          T  
Sbjct: 88  -----DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG-KTG--------WKTSF 133

Query: 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           + A    ++      LS   S   L       + + 
Sbjct: 134 YHAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIHIT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  140 bits (356), Expect = 2e-38
 Identities = 26/215 (12%), Positives = 58/215 (26%), Gaps = 54/215 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCG-QTALMQACRYGHWEVVQTLLLFRCNV 104
           N+ L++A   G+ + V L ++    +      G +T+   A       +V   L    + 
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
                    + +H    NGHV  + L++                  D             
Sbjct: 156 FDLAI--LLSCIHITIKNGHVDMMILLL------------------DYM--------TS- 186

Query: 165 SALSKFVNKAADGGIT-ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                  N          + +A  N   + +Q L     N+                  +
Sbjct: 187 ------TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-----------------YS 223

Query: 224 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 258
                    + +  ++++ +     S +    L +
Sbjct: 224 ANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  118 bits (298), Expect = 3e-30
 Identities = 18/212 (8%), Positives = 49/212 (23%), Gaps = 59/212 (27%)

Query: 44  GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCN 103
           G  +  + A       IV+  L              + +    + GH +++  LL +  +
Sbjct: 128 GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVDMMILLLDYMTS 186

Query: 104 VTRADYLSGRT-ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
               +        +  A  N  +  ++                                 
Sbjct: 187 TNTNN-SLLFIPDIKLAIDNKDIEMLQA-------------------------------- 213

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
                        +   +A     L    +  +++++ H    + +              
Sbjct: 214 -------LFKYDINIY-SANLENVLLDDAEIAKMIIEKHVEYKSDS----------YTKD 255

Query: 223 TPLHFAACGGNLKCCQVLLSRGA-SRMSLNCN 253
             +         K  +++        M +NC 
Sbjct: 256 LDIVKNN-----KLDEIISKNKELRLMYVNCV 282

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  154 bits (392), Expect = 4e-44
 Identities = 54/226 (23%), Positives = 83/226 (36%), Gaps = 45/226 (19%)

Query: 46  NSPLHFAAAKGHNEIVA-LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           N PLH A  +     V  LL    + +  ++  G+  L  +  +   E+   LL    NV
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 105 TRADYL--SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
              DY   SG T  H A   G++  ++ +                   DR          
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLY------------------DRPLKPD----- 99

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
                   +NK  + G+T LH+A    +F+  Q L++  A+V                  
Sbjct: 100 --------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF----------NQ 141

Query: 223 TPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPLDVARMWGRH 267
            PLH AA  G+LK  ++L   G S ++  +  GW PL  A   G  
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  149 bits (378), Expect = 5e-42
 Identities = 55/255 (21%), Positives = 86/255 (33%), Gaps = 58/255 (22%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           A  + +F + + LL   P L       G   PLH++ +   +EI + LL    +VN  +Y
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNLDDY 67

Query: 77  C---GQTALMQACRYGHWEVVQTLL--LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
               G T    AC  G+ EVV++L     + ++ +     G T LH A         + +
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFL 126

Query: 132 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 188
           +   A                                     V          LH AA  
Sbjct: 127 IENGAS------------------------------------VRIKDKFNQIPLHRAASV 150

Query: 189 GYFDCVQLLLDLHAN-VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GAS 246
           G    ++LL  L  + V+               G TPL  A   G+     +L+ + GA 
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQ----------GWTPLFHALAEGHGDAAVLLVEKYGAE 200

Query: 247 RMSLNCNGWLPLDVA 261
              ++  G    DVA
Sbjct: 201 YDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  132 bits (336), Expect = 4e-36
 Identities = 41/198 (20%), Positives = 62/198 (31%), Gaps = 49/198 (24%)

Query: 48  PLHFAAAKGHNEIVALLLEN--GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
           P H A + G+ E+V  L +     D+N     G T L  A     +EV Q L+    +V 
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR 134

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
             D    +  LH AA  G +                +++                K    
Sbjct: 135 IKDK-FNQIPLHRAASVGSL----------------KLIELLCG---------LGKSA-- 166

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTP 224
                VN     G T L  A   G+ D   LL++ + A    V             G+  
Sbjct: 167 -----VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK----------GAKA 211

Query: 225 LHFAACGGNLKCCQVLLS 242
              A    N +  +  L+
Sbjct: 212 EDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  107 bits (270), Expect = 6e-27
 Identities = 38/187 (20%), Positives = 60/187 (32%), Gaps = 44/187 (23%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV 136
               L QAC    +  VQ LL  +   + + D   GR  LH++                 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAH----------- 49

Query: 137 PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL 196
                E+ +  +        +V             +   D G T  H+A   G  + V+ 
Sbjct: 50  -----EITSFLLS----KMENVNLD----------DYPDDSGWTPFHIACSVGNLEVVKS 90

Query: 197 LLDLH--ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 254
           L D     +++ +T            G T LH A      +  Q L+  GAS    +   
Sbjct: 91  LYDRPLKPDLNKITNQ----------GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140

Query: 255 WLPLDVA 261
            +PL  A
Sbjct: 141 QIPLHRA 147

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  158 bits (401), Expect = 5e-44
 Identities = 56/230 (24%), Positives = 81/230 (35%), Gaps = 48/230 (20%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
             PLH A + GH E+  LLL++GA VN+ +    T L +A      EV   LL    + T
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD-------RGDGSSV 158
             +   G++A+  A                      E +  + +G          D + V
Sbjct: 152 LVNC-HGKSAVDMAPTPELR----------------ERLTYEFKGHSLLQAAREADLAKV 194

Query: 159 K----SKCDQSALSKFVNKAADGGITALHMAALNGYF---DCVQLLLDLHANVSAVTFHY 211
           K     +           K      TALH A  + +       +LLL   ANV+      
Sbjct: 195 KKTLALEII-------NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD- 246

Query: 212 GTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
                      TPLH AA   +    +VL   GA   +L+  G   L  A
Sbjct: 247 ---------FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  154 bits (392), Expect = 8e-43
 Identities = 65/278 (23%), Positives = 93/278 (33%), Gaps = 71/278 (25%)

Query: 14  LVSAARDGDFVEAKMLL-----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENG 68
           L+ AAR G+  +   LL     +C+   A        ++PLH AA      IV LLL++G
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCH---AS-DGRK--STPLHLAAGYNRVRIVQLLLQHG 81

Query: 69  ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCI 128
           ADV++++  G   L  AC YGH+EV + LL     V   D     T LH AA    V   
Sbjct: 82  ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-WQFTPLHEAASKNRVEVC 140

Query: 129 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 185
            L++   AD                                           G +A+ MA
Sbjct: 141 SLLLSHGAD------------------------------------PTLVNCHGKSAVDMA 164

Query: 186 ALNGYFDCVQLLLD----LHANVSAVTFHYGTSMDLI--GA--------GSTPLHFAACG 231
                 + +         L A   A           +              T LH A   
Sbjct: 165 PTPELRERLTYEFKGHSLLQA---AREADLAKVKKTLALEIINFKQPQSHETALHCAVAS 221

Query: 232 G---NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
                 +  ++LL +GA+    N +   PL VA     
Sbjct: 222 LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  144 bits (366), Expect = 4e-39
 Identities = 40/204 (19%), Positives = 59/204 (28%), Gaps = 51/204 (25%)

Query: 46  NSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
              L  AA  G+  +++ALL     + ++ +    T L  A  Y    +VQ LL    +V
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
              D   G   LH A   GH     L++   A                            
Sbjct: 85  HAKDK-GGLVPLHNACSYGHYEVTELLLKHGAC--------------------------- 116

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
                    VN       T LH AA     +   LLL   A+ + V  H          G
Sbjct: 117 ---------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH----------G 157

Query: 222 STPLHFAACGGNLKCCQVLLSRGA 245
            + +  A      +         +
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  140 bits (356), Expect = 1e-37
 Identities = 50/211 (23%), Positives = 79/211 (37%), Gaps = 52/211 (24%)

Query: 56  GHN-EIVALLLENGADVNSRNYCGQTALMQACRYGHW-EVVQTLLLFRCNVTRADYLSGR 113
           G   +    L +  A         +  L++A R G+  +++  L     N   +D     
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG-RKS 59

Query: 114 TALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170
           T LH AA    VR ++L++   AD                                    
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGAD------------------------------------ 83

Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           V+    GG+  LH A   G+++  +LLL   A V+A+               TPLH AA 
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW----------QFTPLHEAAS 133

Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
              ++ C +LLS GA    +NC+G   +D+A
Sbjct: 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  138 bits (351), Expect = 6e-37
 Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 53/216 (24%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            S +  A      E +    +  +            L+QA R      V+  L       
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHS------------LLQAAREADLAKVKKTLALEIINF 205

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
           +    S  TALH A  + H +               +V    +   +G         +  
Sbjct: 206 KQPQ-SHETALHCAVASLHPKRK-------------QVAELLLR--KG--------AN-- 239

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
                VN+     +T LH+AA   + D +++L    A ++A+             G T L
Sbjct: 240 -----VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL----------GQTAL 284

Query: 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           H AA  G+L+ C++LLS G+    ++  G+    + 
Sbjct: 285 HRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  129 bits (328), Expect = 8e-34
 Identities = 51/230 (22%), Positives = 77/230 (33%), Gaps = 62/230 (26%)

Query: 10  SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN---EIVALLLE 66
            G  L+ AAR+ D  + K  L       K        + LH A A  H    ++  LLL 
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSH--ETALHCAVASLHPKRKQVAELLLR 235

Query: 67  NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126
            GA+VN +N    T L  A    H +V++ L      +   D   G+TALH AA+ GH++
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS-LGQTALHRAALAGHLQ 294

Query: 127 CIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183
             RL++   +D                                     +  +  G TA  
Sbjct: 295 TCRLLLSYGSD------------------------------------PSIISLQGFTAAQ 318

Query: 184 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 233
           M       + VQ +L     +                    L  A+  G+
Sbjct: 319 MGN-----EAVQQILSESTPMRTSD------------VDYRLLEASKAGD 351

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  153 bits (390), Expect = 5e-44
 Identities = 43/256 (16%), Positives = 69/256 (26%), Gaps = 58/256 (22%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           +  A    +      L     D         T            +KG   ++        
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDT------NWWKGTSKGRTGLI-----PSN 64

Query: 70  DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR 129
            V  +       L +A + G+   ++  L  R  V   D  +G TAL++A   GH   + 
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHKDIVE 123

Query: 130 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189
           ++                           +   +       +N+    G TALH AA  G
Sbjct: 124 MLFT-------------------------QPNIE-------LNQQNKLGDTALHAAAWKG 151

Query: 190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 249
           Y D VQLLL   A                         A         +      A R  
Sbjct: 152 YADIVQLLLAKGARTDLRNIE----------KKLAFDMATNAACASLLKKKQGTDAVRTL 201

Query: 250 LNCNGWLPLDVARMWG 265
            N   +L  + + +  
Sbjct: 202 SNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  148 bits (376), Expect = 6e-42
 Identities = 39/222 (17%), Positives = 60/222 (27%), Gaps = 56/222 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            +  A           L     D+        T   +    G   ++ +  +        
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE--- 71

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              S    LH AA  G++  +R  +                                   
Sbjct: 72  ---SIDNPLHEAAKRGNLSWLRECLDNRVG------------------------------ 98

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGST 223
                 VN     G TAL+ A   G+ D V++L       ++               G T
Sbjct: 99  ------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL----------GDT 142

Query: 224 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
            LH AA  G     Q+LL++GA     N    L  D+A    
Sbjct: 143 ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA 184

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  131 bits (333), Expect = 8e-36
 Identities = 34/191 (17%), Positives = 56/191 (29%), Gaps = 51/191 (26%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR-CNVTR 106
           PLH AA +G+   +   L+N   VN  +  G TAL  AC  GH ++V+ L       + +
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
            +   G TALH AA  G+   ++L++   A                              
Sbjct: 136 QNK-LGDTALHAAAWKGYADIVQLLLAKGAR----------------------------- 165

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                   +        A  MA        ++      A  +                  
Sbjct: 166 -------TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN----------AEDYL 208

Query: 224 PLHFAACGGNL 234
               +    + 
Sbjct: 209 DDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (255), Expect = 5e-25
 Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 50/196 (25%)

Query: 72  NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
                 GQ  + +A           L +   ++     +   T        G       +
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDM-SDTNWWKGTSKGRT----GL 60

Query: 132 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
           +                                   S +V + A+     LH AA  G  
Sbjct: 61  IP----------------------------------SNYVAEQAESIDNPLHEAAKRGNL 86

Query: 192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSL 250
             ++  LD    V+ +             GST L++A  GG+    ++L +         
Sbjct: 87  SWLRECLDNRVGVNGLDKA----------GSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136

Query: 251 NCNGWLPLDVARMWGR 266
           N  G   L  A   G 
Sbjct: 137 NKLGDTALHAAAWKGY 152

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  100 bits (252), Expect = 2e-24
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 35/148 (23%)

Query: 46  NSPLHFAAAKGHNEIVALLL-ENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           ++ L++A   GH +IV +L  +   ++N +N  G TAL  A   G+ ++VQ LL      
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              +    + A   A                       +              +K K   
Sbjct: 167 DLRNI-EKKLAFDMATNAACA----------------SL--------------LKKKQGT 195

Query: 165 SALSKFVNKAADGGITALHMAALNGYFD 192
            A+      +          + L  +  
Sbjct: 196 DAV---RTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 25/113 (22%), Positives = 34/113 (30%), Gaps = 18/113 (15%)

Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT------FHYGTS---MDL 217
           +SK   K    G   +  A           L     ++  +T      +  GTS     L
Sbjct: 1   MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL 60

Query: 218 IGA---------GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           I +            PLH AA  GNL   +  L        L+  G   L  A
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA 113

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  151 bits (385), Expect = 6e-43
 Identities = 36/217 (16%), Positives = 62/217 (28%), Gaps = 48/217 (22%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            L         +  +  + +G  V          L+ +   G +++VQ ++    + +  
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           +   G TALH A   GH   ++ +V    +                              
Sbjct: 67  ND-EGITALHNAVCAGHTEIVKFLVQFGVN------------------------------ 95

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
                 VN A   G T LH AA        + L++  A V A+T+            +  
Sbjct: 96  ------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ-------TAAD 142

Query: 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
                  G  +C Q L         +N      L   
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDY 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  128 bits (325), Expect = 2e-34
 Identities = 41/235 (17%), Positives = 74/235 (31%), Gaps = 60/235 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            L  ++ +G  ++V  ++    D +  N  G TAL  A   GH E+V+ L+ F  NV  A
Sbjct: 40  LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
           D   G T LH AA   +V                +V    +E     G++V +       
Sbjct: 100 DS-DGWTPLHCAASCNNV----------------QVCKFLVES----GAAVFAM------ 132

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
                 +              GY  C Q L  +   +  +                 L  
Sbjct: 133 ----TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN----------KGVIYALWD 178

Query: 228 AACGGNLKCCQVLLSRGASRMSL----------------NCNGWLPLDVARMWGR 266
                +    ++ +  G     +                +  G++P ++  ++ R
Sbjct: 179 YEPQNDD---ELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPR 230

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  111 bits (281), Expect = 2e-28
 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 54/190 (28%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---AD 134
           GQ +L    R    +     +     V           L  +++ G    ++ ++    D
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL--PLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 194
                                                +   D GITALH A   G+ + V
Sbjct: 63  ------------------------------------PSLPNDEGITALHNAVCAGHTEIV 86

Query: 195 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 254
           + L+    NV+A              G TPLH AA   N++ C+ L+  GA+  ++  + 
Sbjct: 87  KFLVQFGVNVNAADSD----------GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD 136

Query: 255 ---WLPLDVA 261
                     
Sbjct: 137 MQTAADKCEE 146

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.0 bits (211), Expect = 7e-19
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 44/151 (29%)

Query: 111 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170
           +G+ +L                         +  + +I      G  VK           
Sbjct: 4   TGQVSLPPGKRTNLR----------------KTGSERIAH----GMRVKFN--------- 34

Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
                   +  L  ++L G FD VQ ++    + S               G T LH A C
Sbjct: 35  -----PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE----------GITALHNAVC 79

Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            G+ +  + L+  G +  + + +GW PL  A
Sbjct: 80  AGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 11/116 (9%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCL-AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           L  AA   +    K L++    + A   +     +       +G+ +    L      + 
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166

Query: 73  SRNYCGQTALMQACRYGHWEVVQTLLLFRC----NVTRADYLSGRTALHFAAVNGH 124
             N     AL         E     L  +      +   +         +A +N  
Sbjct: 167 IMNKGVIYALWDYEPQNDDE-----LPMKEGDCMTIIHREDE-DEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 11/90 (12%), Positives = 17/90 (18%), Gaps = 11/90 (12%)

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G  +L               +     V                    L  ++  G     
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-----------PLALLLDSSLEGEFDLV 53

Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           Q ++         N  G   L  A   G  
Sbjct: 54  QRIIYEVDDPSLPNDEGITALHNAVCAGHT 83

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  148 bits (377), Expect = 9e-43
 Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 50/200 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
              L  AA  G ++ V +L+ NGADVN+ +  G T L  A   GH E+V+ LL    +V 
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
             D+ +G T L  AA+ GH+  + +++   AD                            
Sbjct: 75  AVDH-AGMTPLRLAALFGHLEIVEVLLKNGAD---------------------------- 105

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
                   VN     G T LH+AA+ G+ + V++LL   A+V+A              G 
Sbjct: 106 --------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF----------GK 147

Query: 223 TPLHFAACGGNLKCCQVLLS 242
           T    +   GN    ++L  
Sbjct: 148 TAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  118 bits (298), Expect = 2e-31
 Identities = 53/203 (26%), Positives = 81/203 (39%), Gaps = 51/203 (25%)

Query: 68  GADVN-SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126
           G+  +          L++A R G  + V+ L+    +V   D  SG T LH AA NGH+ 
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA-SGWTPLHLAAFNGHLE 61

Query: 127 CIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183
            + +++   AD                                    VN     G+T L 
Sbjct: 62  IVEVLLKNGAD------------------------------------VNAVDHAGMTPLR 85

Query: 184 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243
           +AAL G+ + V++LL   A+V+A              G TPLH AA  G+L+  +VLL  
Sbjct: 86  LAALFGHLEIVEVLLKNGADVNANDME----------GHTPLHLAAMFGHLEIVEVLLKN 135

Query: 244 GASRMSLNCNGWLPLDVARMWGR 266
           GA   + +  G    D++   G 
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGN 158

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.9 bits (201), Expect = 3e-18
 Identities = 43/159 (27%), Positives = 61/159 (38%), Gaps = 49/159 (30%)

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
               L  AA  G    +R+++   AD                                  
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGAD---------------------------------- 39

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228
             VN     G T LH+AA NG+ + V++LL   A+V+AV             G TPL  A
Sbjct: 40  --VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA----------GMTPLRLA 87

Query: 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           A  G+L+  +VLL  GA   + +  G  PL +A M+G  
Sbjct: 88  ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  150 bits (381), Expect = 2e-42
 Identities = 55/230 (23%), Positives = 86/230 (37%), Gaps = 45/230 (19%)

Query: 47  SPLHFAAAKGHNEIVA-LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
           SPL  AA +   + ++ LL   G +V+ R   G+TAL  A  Y + E    L+     + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 106 RADYLS----GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
                S    G+TALH A +N +V  +R ++A                     G+SV ++
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLA--------------------RGASVSAR 104

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
              S      +     G   L  AA  G  + V+LL++  A++ A              G
Sbjct: 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL----------G 154

Query: 222 STPLHFAACGGN----LKCCQVLLSRGA------SRMSLNCNGWLPLDVA 261
           +T LH      N     +   +LLS           +  N  G  P  +A
Sbjct: 155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  135 bits (343), Expect = 4e-37
 Identities = 45/222 (20%), Positives = 64/222 (28%), Gaps = 64/222 (28%)

Query: 48  PLHFAAAKGHNEIVALLLENGADV-----NSRNYCGQTALMQACRYGHWEVVQTLLLFRC 102
            LH AA   + E   +L+E   ++      S  Y GQTAL  A    +  +V+ LL    
Sbjct: 40  ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99

Query: 103 NV------------TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQ 147
           +V                   G   L FAA  G    +RL++   AD             
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD------------- 146

Query: 148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV----QLLLDLHAN 203
                                  +      G T LH+  L            LLL     
Sbjct: 147 -----------------------IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183

Query: 204 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
               +     +      G TP   A   GN+   Q L+ +  
Sbjct: 184 DHLKSLELVPNNQ----GLTPFKLAGVEGNIVMFQHLMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  116 bits (292), Expect = 5e-30
 Identities = 44/191 (23%), Positives = 74/191 (38%), Gaps = 39/191 (20%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---A 133
            ++ L+ A +    + +  LL F  C V +     G TALH AA+  ++    +++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA-MGETALHIAALYDNLEAAMVLMEAAP 61

Query: 134 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 193
           + V                                         G TALH+A +N   + 
Sbjct: 62  ELVFEPM-------------------------------TSELYEGQTALHIAVINQNVNL 90

Query: 194 VQLLLDLHANVSA---VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 250
           V+ LL   A+VSA    +  +    +LI  G  PL FAAC G+ +  ++L+  GA   + 
Sbjct: 91  VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ 150

Query: 251 NCNGWLPLDVA 261
           +  G   L + 
Sbjct: 151 DSLGNTVLHIL 161

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  153 bits (390), Expect = 2e-42
 Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 49/232 (21%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRC--- 102
           N+PL  A       +VA L++ GAD    N   ++AL QA     + ++  +L       
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 103 NVTRADYLSGRTALHFAAVNGH---VRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGS 156
           ++   D  +G TAL   A N     V   +L+V   A              ++ D     
Sbjct: 227 DIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAK-------------VDYDGAARK 272

Query: 157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSM 215
             +                  G TALH AA       V+ L+    +N            
Sbjct: 273 DSEKY---------------KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----- 312

Query: 216 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
                G TP+  AA  G ++    L+ +GAS  +++        +A+    H
Sbjct: 313 -----GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH 359

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  145 bits (368), Expect = 3e-39
 Identities = 54/226 (23%), Positives = 87/226 (38%), Gaps = 45/226 (19%)

Query: 48  PLHFAAAKGHNEIVALLL--------ENGADVNSRNYCGQTALMQACRYGHWEVVQTLLL 99
            LH+ A+    E    L+          GADVN+ +    T LM A       +V  L+ 
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 187

Query: 100 FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK 159
              + T  +  S R+ALH AA N     +  ++                       +S K
Sbjct: 188 AGADPTIYNK-SERSALHQAAANRDFGMMVYML-----------------------NSTK 223

Query: 160 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCV---QLLLDLHANVSAVTFHYGTSMD 216
            K D       + +    G+TAL + A N   D V   +LL++  A V         S  
Sbjct: 224 LKGD-------IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276

Query: 217 LIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVA 261
               G T LH+AA   N+   + L+  +G+++   + +G  P+ +A
Sbjct: 277 YK--GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  140 bits (356), Expect = 2e-37
 Identities = 32/217 (14%), Positives = 55/217 (25%), Gaps = 41/217 (18%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           P       G++ +      N              L      G + + + +     N+   
Sbjct: 64  PNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDP 122

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
            +   RT LH+ A N        ++              +     G         D    
Sbjct: 123 RH--NRTVLHWIASNSSAEKSEDLIVHEA----------KECIAAG--------AD---- 158

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
              VN       T L +A L      V  L+   A+ +                 + LH 
Sbjct: 159 ---VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS----------ERSALHQ 205

Query: 228 AACGGNLKCCQVLLS---RGASRMSLNCNGWLPLDVA 261
           AA   +      +L+          L+ NG   L + 
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  134 bits (340), Expect = 3e-35
 Identities = 40/218 (18%), Positives = 66/218 (30%), Gaps = 65/218 (29%)

Query: 46  NSPLHFAAAKGHNEIVALLLEN---GADVNSRNYCGQTALMQACRYGHWEVVQT--LLL- 99
            S LH AAA     ++  +L +     D+   +  G TALM        + V +  LL+ 
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE 259

Query: 100 --------FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV----ADFVPSVPFEVMNTQ 147
                            Y  GRTALH+AA   ++  ++ +V    ++             
Sbjct: 260 KGAKVDYDGAARKDSEKY-KGRTALHYAAQVSNMPIVKYLVGEKGSN------------- 305

Query: 148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 207
                                   +K  + G T + +AA  G  + V  L+   A+V AV
Sbjct: 306 -----------------------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342

Query: 208 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
                          T    A    +     +      
Sbjct: 343 DAT----------DHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  130 bits (330), Expect = 7e-34
 Identities = 36/239 (15%), Positives = 63/239 (26%), Gaps = 74/239 (30%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR------ 101
            LH  A  G   I   +     ++    +  +T L         E  + L++        
Sbjct: 97  KLHTEA-AGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIA 154

Query: 102 --CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGS 156
              +V   D     T L  A +    R +  ++   AD                      
Sbjct: 155 AGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKAGAD---------------------- 191

Query: 157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH---ANVSAVTFHYGT 213
                                  +ALH AA N  F  +  +L+      ++  +  +   
Sbjct: 192 --------------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN--- 234

Query: 214 SMDLIGAGSTPLHFAACGGN---LKCCQVLLSRGA--------SRMSLNCNGWLPLDVA 261
                  G T L   A       +   ++L+ +GA         + S    G   L  A
Sbjct: 235 -------GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  105 bits (263), Expect = 8e-25
 Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 52/174 (29%)

Query: 46  NSPLHFAAAKGHNEIVA---LLLENGADVN--------SRNYCGQTALMQACRYGHWEVV 94
            + L   A     + VA   LL+E GA V+        S  Y G+TAL  A +  +  +V
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 95  QTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEG 150
           + L+  +  N  + D   G+T +  AA  G +  +  ++   A                 
Sbjct: 296 KYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGAS---------------- 338

Query: 151 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204
                               V        TA  +A  N + + V +        
Sbjct: 339 --------------------VEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  102 bits (257), Expect = 4e-24
 Identities = 30/224 (13%), Positives = 47/224 (20%), Gaps = 63/224 (28%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
              L  A+  G+ +            N   +       Q    G+  +           T
Sbjct: 38  QHSLLEASYDGYIKRQ---------RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPT 88

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
             +       LH  A  G                   +                   +  
Sbjct: 89  EPEP-ESPIKLHTEA-AGSY----------------AITEPITR--ES--------VN-- 118

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA----- 220
                +        T LH  A N   +  + L+           H        GA     
Sbjct: 119 -----IIDP-RHNRTVLHWIASNSSAEKSEDLIV----------HEAKECIAAGADVNAM 162

Query: 221 ---GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
               +TPL  A      +    L+  GA     N +    L  A
Sbjct: 163 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 206

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 26/204 (12%), Positives = 54/204 (26%), Gaps = 63/204 (30%)

Query: 66  ENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV 125
           E     +      Q +L++A   G+ +  +  L          +            NG+ 
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNEL---------QH-YSLYPNPQGYGNGN- 73

Query: 126 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 185
                 + DF  +                            +     +        LH  
Sbjct: 74  ----DFLGDFNHT-------------------------NLQI---PTEPEPESPIKLHTE 101

Query: 186 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL---- 241
           A  G +   + +     N+                  T LH+ A   + +  + L+    
Sbjct: 102 A-AGSYAITEPITRESVNIIDPRH-----------NRTVLHWIASNSSAEKSEDLIVHEA 149

Query: 242 ----SRGASRMSLNCNGWLPLDVA 261
               + GA   +++C+   PL +A
Sbjct: 150 KECIAAGADVNAMDCDENTPLMLA 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  146 bits (372), Expect = 7e-42
 Identities = 39/202 (19%), Positives = 63/202 (31%), Gaps = 51/202 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
            +     +G+   V L L+N   D+N  +  G + L  ACR G   VV+ L++    +  
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
            +     T LH AA +GH   ++ ++   AD                             
Sbjct: 68  MNR-GDDTPLHLAASHGHRDIVQKLLQYKAD----------------------------- 97

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                  +N   + G   LH A   G     + L+   A VS    +          G  
Sbjct: 98  -------INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY----------GEM 140

Query: 224 PLHFAACGGNLKCCQVLLSRGA 245
           P+  A         +     G 
Sbjct: 141 PVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  136 bits (346), Expect = 4e-38
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 41/200 (20%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           + +  R+G+ V  ++ LD            G  SPLH+A  +G + +V +L+  GA +N 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHG-FSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV- 132
            N    T L  A  +GH ++VQ LL ++ ++   +   G   LH+A   G  +    +V 
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVA 126

Query: 133 --ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
             A                                     V+     G   +  A     
Sbjct: 127 NGAL------------------------------------VSICNKYGEMPVDKAKAPLR 150

Query: 191 FDCVQLLLDLHANVSAVTFH 210
               +    +  N++ + + 
Sbjct: 151 ELLRERAEKMGQNLNRIPYK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  119 bits (300), Expect = 1e-31
 Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 51/193 (26%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---A 133
               +   CR G+   V+  L     ++ + D   G + LH+A   G    + +++   A
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 134 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 193
                                                +N    G  T LH+AA +G+ D 
Sbjct: 64  R------------------------------------INVMNRGDDTPLHLAASHGHRDI 87

Query: 194 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 253
           VQ LL   A+++AV  H          G+ PLH+A   G  +  + L++ GA     N  
Sbjct: 88  VQKLLQYKADINAVNEH----------GNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137

Query: 254 GWLPLDVARMWGR 266
           G +P+D A+   R
Sbjct: 138 GEMPVDKAKAPLR 150

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 89.0 bits (222), Expect = 7e-21
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
           N PLH+A   G +++   L+ NGA V+  N  G+  + +A       + +       N+ 
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL- 164

Query: 106 RADYLSGRTALHFAAVNGHVR 126
                  R         G  R
Sbjct: 165 ------NRIPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.6 bits (208), Expect = 5e-19
 Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 42/156 (26%)

Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
               +      G+   +RL +                  D  +                +
Sbjct: 5   FMDDIFTQCREGNAVAVRLWL------------------DNTEND--------------L 32

Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
           N+  D G + LH A   G    V++L+   A ++ +               TPLH AA  
Sbjct: 33  NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG----------DDTPLHLAASH 82

Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           G+    Q LL   A   ++N +G +PL  A  WG+ 
Sbjct: 83  GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  146 bits (372), Expect = 7e-42
 Identities = 44/202 (21%), Positives = 64/202 (31%), Gaps = 55/202 (27%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
                   GH+          ADV S     +T    A R    + +   LL   +V   
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALS-QLLEDRDVDAV 72

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           D  +GRTAL F A  G  +C+RL+    AD                              
Sbjct: 73  DE-NGRTALLFVAGLGSDKCVRLLAEAGAD------------------------------ 101

Query: 165 SALSKFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                 ++ +   GG+TALHMAA     + V+ L++L A++                G T
Sbjct: 102 ------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER----------GLT 145

Query: 224 PLHFAACGGNLKCCQVLLSRGA 245
            L  A            +  G 
Sbjct: 146 ALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  138 bits (349), Expect = 1e-38
 Identities = 37/198 (18%), Positives = 61/198 (30%), Gaps = 53/198 (26%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
            +   +DG             D     ++Y T      P   AA K   + ++ LLE   
Sbjct: 18  YLIEWKDGHSPSWVPSSYIAADVV---SEYET------PWWTAARKADEQALSQLLE-DR 67

Query: 70  DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR 129
           DV++ +  G+TAL+     G  + V+ L     ++   D   G TALH AA       + 
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 130 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 186
            +V   AD                                    +    + G+TAL +A 
Sbjct: 128 ALVELGAD------------------------------------IEVEDERGLTALELAR 151

Query: 187 LNGYFDCVQLLLDLHANV 204
                      +     +
Sbjct: 152 EILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  117 bits (297), Expect = 3e-31
 Identities = 35/200 (17%), Positives = 56/200 (28%), Gaps = 47/200 (23%)

Query: 67  NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126
           N    +     G    +   + GH            +V         T    AA     +
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQ 58

Query: 127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 186
            +  +                +E             D       V+   + G TAL   A
Sbjct: 59  ALSQL----------------LED-----------RD-------VDAVDENGRTALLFVA 84

Query: 187 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246
             G   CV+LL +  A++                G T LH AA     +  + L+  GA 
Sbjct: 85  GLGSDKCVRLLAEAGADLDHRDMRG---------GLTALHMAAGYVRPEVVEALVELGAD 135

Query: 247 RMSLNCNGWLPLDVARMWGR 266
               +  G   L++AR   +
Sbjct: 136 IEVEDERGLTALELAREILK 155

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 15/96 (15%)

Query: 167 LSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
           ++K +     G G     +   +G+         + A+V +                TP 
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-------------EYETPW 48

Query: 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
             AA   + +    LL       +++ NG   L   
Sbjct: 49  WTAARKADEQALSQLLE-DRDVDAVDENGRTALLFV 83

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 5/51 (9%), Positives = 10/51 (19%), Gaps = 17/51 (33%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLL 98
            L  A            ++ G  +                    +V+  L 
Sbjct: 146 ALELAREILKTTPKGNPMQFGRRIG-----------------LEKVINVLE 179

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  145 bits (368), Expect = 4e-41
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 49/228 (21%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            + L  A  +   ++  +L +    V+  +  G T L  A      E+ + L+    ++ 
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
             +     +   +A   G                  E++   ++    D           
Sbjct: 67  LQNS-ISDSPYLYAGAQGRT----------------EILAYMLKHATPD----------- 98

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTP 224
                +NK    G  AL  AA  G+ D V+LLL+    ++                G T 
Sbjct: 99  -----LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF----------GYTA 143

Query: 225 LHFAACG-----GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           L  A              ++L+  GA +   + +G   +D A   G  
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  137 bits (347), Expect = 6e-38
 Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 49/203 (24%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCNV 104
           N+PL+ A      EI   L++ GAD+N +N    +  + A   G  E++  +L     ++
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
            + +   G  AL  AA  GH+                + +   +E  R D          
Sbjct: 100 NKHNR-YGGNALIPAAEKGHI----------------DNVKLLLEDGRED---------- 132

Query: 165 SALSKFVNKAADGGITALHMAAL-----NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIG 219
                 ++   D G TAL  A         Y D V+LL++  A+ S              
Sbjct: 133 ------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD----------N 176

Query: 220 AGSTPLHFAACGGNLKCCQVLLS 242
           +G T + +A   G  +  ++L  
Sbjct: 177 SGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  100 bits (251), Expect = 1e-24
 Identities = 30/193 (15%), Positives = 53/193 (27%), Gaps = 52/193 (26%)

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV- 132
           + Y     L  A +    +V + L      V   D   G T L+ A  N  +   + ++ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALID 60

Query: 133 --ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
             AD                                    +N       +    A   G 
Sbjct: 61  RGAD------------------------------------INLQNSISDSPYLYAGAQGR 84

Query: 191 FDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRM 248
            + +  +L     +++    +          G   L  AA  G++   ++LL  G     
Sbjct: 85  TEILAYMLKHATPDLNKHNRY----------GGNALIPAAEKGHIDNVKLLLEDGREDID 134

Query: 249 SLNCNGWLPLDVA 261
             N  G+  L  A
Sbjct: 135 FQNDFGYTALIEA 147

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  142 bits (362), Expect = 1e-40
 Identities = 41/199 (20%), Positives = 63/199 (31%), Gaps = 53/199 (26%)

Query: 48  PLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
            L  AAA+G  + V  LL       ++ N  G+TAL     +G   +   LL    +   
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV 63

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
            D  SG + +H AA  G +  ++++V   AD                             
Sbjct: 64  QDT-SGTSPVHDAARTGFLDTLKVLVEHGAD----------------------------- 93

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
                  VN     G   +H+A   G+   V  L    +++                G T
Sbjct: 94  -------VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDAR----------GLT 135

Query: 224 PLHFAACGGNLKCCQVLLS 242
           PL  A   G      +L  
Sbjct: 136 PLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  124 bits (314), Expect = 6e-34
 Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 51/196 (26%)

Query: 11  GERLVSAARDGDFVEAKMLL-----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL 65
           G+RL  AA  GD  E + LL       +   A  + FG   + L      G   I   LL
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPD---AL-NRFG--KTALQ-VMMFGSTAIALELL 55

Query: 66  ENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV 125
           + GA  N ++  G + +  A R G  + ++ L+    +V   D  +G   +H A   GH 
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHT 114

Query: 126 RCIRLVV--ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183
             +  +   +D                                    +++    G+T L 
Sbjct: 115 AVVSFLAAESD------------------------------------LHRRDARGLTPLE 138

Query: 184 MAALNGYFDCVQLLLD 199
           +A   G  D V +L  
Sbjct: 139 LALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (266), Expect = 4e-27
 Identities = 34/194 (17%), Positives = 59/194 (30%), Gaps = 53/194 (27%)

Query: 78  GQTALMQACRYGHWEVVQTLLL-FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---A 133
               L  A   G  + V+ LL     +    +   G+TAL      G       ++   A
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMM-FGSTAIALELLKQGA 59

Query: 134 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 193
                                                 N     G + +H AA  G+ D 
Sbjct: 60  S------------------------------------PNVQDTSGTSPVHDAARTGFLDT 83

Query: 194 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 253
           +++L++  A+V+             G G+ P+H A   G+      L +  +     +  
Sbjct: 84  LKVLVEHGADVNVPD----------GTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDAR 132

Query: 254 GWLPLDVARMWGRH 267
           G  PL++A   G  
Sbjct: 133 GLTPLELALQRGAQ 146

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  142 bits (362), Expect = 1e-40
 Identities = 49/202 (24%), Positives = 76/202 (37%), Gaps = 52/202 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            L  AAA+G  E +  LL+N  +VN++N  G+TAL    + G+ E+ + LLL   N    
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLK 66

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           D  +G   +H AA  G +  ++ ++   AD                              
Sbjct: 67  DR-TGFAVIHDAARAGFLDTLQTLLEFQAD------------------------------ 95

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGST 223
                 VN   + G   LH+AA  G+   V+ L+   A NV                G T
Sbjct: 96  ------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK----------GDT 139

Query: 224 PLHFAACGGNLKCCQVLLSRGA 245
               A   G  +   ++ + GA
Sbjct: 140 ACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  119 bits (302), Expect = 4e-32
 Identities = 50/190 (26%), Positives = 73/190 (38%), Gaps = 44/190 (23%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           L SAA  GD  +   LL    + N   A+ + FG   + L      G+ EI   LL  GA
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVN---AQ-NGFG--RTALQ-VMKLGNPEIARRLLLRGA 61

Query: 70  DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR 129
           + + ++  G   +  A R G  + +QTLL F+ +V   D   G   LH AA  GH+R + 
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVE 120

Query: 130 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 189
            +V                                +A +  V      G TA  +A L G
Sbjct: 121 FLV------------------------------KHTASN--VGHRNHKGDTACDLARLYG 148

Query: 190 YFDCVQLLLD 199
             + V L+  
Sbjct: 149 RNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  109 bits (275), Expect = 2e-28
 Identities = 45/193 (23%), Positives = 68/193 (35%), Gaps = 52/193 (26%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---AD 134
               L  A   G  E + +LL    NV   +   GRTAL      G+    R ++   A+
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNG-FGRTALQVMK-LGNPEIARRLLLRGAN 62

Query: 135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 194
                                                +     G   +H AA  G+ D +
Sbjct: 63  ------------------------------------PDLKDRTGFAVIHDAARAGFLDTL 86

Query: 195 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM-SLNCN 253
           Q LL+  A+V+               G+ PLH AA  G+L+  + L+   AS +   N  
Sbjct: 87  QTLLEFQADVNIEDNE----------GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136

Query: 254 GWLPLDVARMWGR 266
           G    D+AR++GR
Sbjct: 137 GDTACDLARLYGR 149

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 31/159 (19%), Positives = 42/159 (26%), Gaps = 50/159 (31%)

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
               L  AA  G +  +  ++    +                                  
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVN---------------------------------- 30

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228
             VN     G TAL +    G  +  + LL   AN                 G   +H A
Sbjct: 31  --VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRT----------GFAVIHDA 77

Query: 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           A  G L   Q LL   A     +  G LPL +A   G  
Sbjct: 78  ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.4 bits (166), Expect = 1e-13
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 175 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 234
           A+     L  AA  G  + +  LL  + NV+A              G T L      GN 
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF----------GRTALQVMKL-GNP 50

Query: 235 KCCQVLLSRGASRMSLNCNGWLPLDVA 261
           +  + LL RGA+    +  G+  +  A
Sbjct: 51  EIARRLLLRGANPDLKDRTGFAVIHDA 77

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  145 bits (368), Expect = 4e-40
 Identities = 47/224 (20%), Positives = 72/224 (32%), Gaps = 42/224 (18%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGAD---VNSRNYCGQTALMQACRYGHWEVVQTLLLFRC 102
           ++ LH A    H   +  LL   A    ++ +N  GQTAL  A   G    V+ L     
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 103 NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
            V  A+   G TALH A       C  +++                        S     
Sbjct: 70  GVLVAER-GGHTALHLACRVRAHTCACVLLQ--------------------PRPSHPRDA 108

Query: 163 DQSALSKFVNKAADGGITALHMAA-LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
             + L++  +   D       + +  N   +      D    + A  +           G
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD----------G 158

Query: 222 STPLHFAACGGNLKCCQVLLSRGASRMSLNC----NGWLPLDVA 261
            TPLH A    + +  ++L   GA    LN      G  PL +A
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGA---DLNKPEPTCGRTPLHLA 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  144 bits (365), Expect = 1e-39
 Identities = 45/230 (19%), Positives = 60/230 (26%), Gaps = 61/230 (26%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            LH AA  G    V  L   GA V      G TAL  ACR         LL  R +  R 
Sbjct: 48  ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

Query: 108 D------------YLSGRTALHFAAVNGHVRCIRLVV----ADFVPSVPFEVMNTQIEGD 151
                          +        +                                   
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ----------------- 150

Query: 152 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHY 211
                              +      G T LH+A ++   + V+LL D  A+++      
Sbjct: 151 -------------------LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 212 GTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
                    G TPLH A         ++LL  GA   +    G  PL  A
Sbjct: 192 ---------GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  143 bits (363), Expect = 2e-39
 Identities = 39/234 (16%), Positives = 65/234 (27%), Gaps = 65/234 (27%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQT--------------ALMQACRYGHW 91
           ++ LH A     +    +LL+                            A + +      
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

Query: 92  EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQI 148
           E       +R  +   +Y  G T LH A ++     +RL+    AD              
Sbjct: 139 EEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGAD-------------- 183

Query: 149 EGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 207
                                 +N      G T LH+A        ++LLL   A+ +A 
Sbjct: 184 ----------------------LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221

Query: 208 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
            +           G TPL  A    N    ++L + GA       +   P   +
Sbjct: 222 MYG----------GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  140 bits (355), Expect = 3e-38
 Identities = 33/208 (15%), Positives = 55/208 (26%), Gaps = 50/208 (24%)

Query: 31  DCNPCLAKYSTFGGLNSPLHFAAAK-GHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89
           D     ++  T    ++P    +     NE      +    + + NY G T L  A  + 
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169

Query: 90  HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNT 146
             E+V+ L     ++ + +   GRT LH A        + L++   AD            
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD------------ 217

Query: 147 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 206
                                         GG T L  A L       +LL    A    
Sbjct: 218 ------------------------PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

Query: 207 VTFHYGTSMDLIGAGSTPLHFAACGGNL 234
                           +P   +    + 
Sbjct: 254 DGGD----------KLSPCSSSGSDSDS 271

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  119 bits (300), Expect = 2e-30
 Identities = 31/156 (19%), Positives = 47/156 (30%), Gaps = 41/156 (26%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSR-NYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           PLH A      E+V LL + GAD+N     CG+T L  A       V++ LL    + T 
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
             Y  GRT L  A +  +    RL+    A                              
Sbjct: 221 RMY-GGRTPLGSALLRPNPILARLLRAHGAP----------------------------- 250

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 199
                    +     ++    +  +   D      +
Sbjct: 251 -------EPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  108 bits (271), Expect = 1e-26
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 10/112 (8%)

Query: 17  AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           A    D    ++L     D N       T G   +PLH A       ++ LLL+ GAD  
Sbjct: 165 AVIHKDAEMVRLLRDAGADLN---KPEPTCG--RTPLHLAVEAQAASVLELLLKAGADPT 219

Query: 73  SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           +R Y G+T L  A    +  + + L                +    +  +  
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG-DKLSPCSSSGSDSD 270

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =   99 bits (250), Expect = 9e-24
 Identities = 38/193 (19%), Positives = 52/193 (26%), Gaps = 45/193 (23%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRAD--YLSGRTALHFAAVNGHVRCIRLVV--- 132
           G TAL  A  + H   +  LL F       D     G+TALH AA+ G    +  +    
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 133 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 192
           A                                     V  A  GG TALH+A       
Sbjct: 69  AG------------------------------------VLVAERGGHTALHLACRVRAHT 92

Query: 193 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP----LHFAACGGNLKCCQVLLSRGASRM 248
           C  +LL    +          +        T        +      +             
Sbjct: 93  CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152

Query: 249 SLNCNGWLPLDVA 261
           + N +G  PL VA
Sbjct: 153 AENYDGHTPLHVA 165

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 96.1 bits (240), Expect = 2e-22
 Identities = 34/161 (21%), Positives = 48/161 (29%), Gaps = 42/161 (26%)

Query: 111 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170
            G TALH A ++ H   +  ++                                SA  ++
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLL------------------------------GFSAGHEY 37

Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           ++   D G TALH+AA+ G    V+ L    A V                G T LH A  
Sbjct: 38  LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG----------GHTALHLACR 87

Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPL--DVARMWGRHWL 269
                C  VLL    S      + +L    D          
Sbjct: 88  VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  140 bits (355), Expect = 5e-39
 Identities = 49/219 (22%), Positives = 81/219 (36%), Gaps = 17/219 (7%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
              + A +   +E+   +L + +     +   +TAL  AC  GH E+V+ LL     V  
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
            D  +G + LH AA  G    ++ ++   A                  +          +
Sbjct: 69  KDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 223
             A     +       TA+H AA  G    V +LL   A+ +               G+T
Sbjct: 128 GGA---NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE----------GNT 174

Query: 224 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 262
           PLH A     ++  + L+++GAS    N     PL VA+
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  102 bits (256), Expect = 4e-25
 Identities = 49/200 (24%), Positives = 70/200 (35%), Gaps = 46/200 (23%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            SPLH AA+ G +EIV  LL  GA VN+ N  G T L  A      E+   LL    N  
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
             D+    TA+H AA  G+++ + +++                       +S        
Sbjct: 134 AKDH-YDATAMHRAAAKGNLKMVHILLF--------------------YKAS-------- 164

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
                 N     G T LH+A      +  + L+   A++                  TPL
Sbjct: 165 -----TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE----------EKTPL 209

Query: 226 HFAACGGNLKCCQVLLSRGA 245
             A   G L      L+ G 
Sbjct: 210 QVAK--GGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 96.1 bits (239), Expect = 9e-23
 Identities = 44/199 (22%), Positives = 68/199 (34%), Gaps = 50/199 (25%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---AD 134
                  A      E+ + +L  +   TR D    RTALH+A   GH   +  ++     
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 194
                                               VN   D G + LH+AA  G  + V
Sbjct: 66  ------------------------------------VNDKDDAGWSPLHIAASAGXDEIV 89

Query: 195 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 254
           + LL   A+V+AV  +          G TPLH+AA     +   +LL  GA+  + +   
Sbjct: 90  KALLVKGAHVNAVNQN----------GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 255 WLPLDVARMWGRHWLEPLL 273
              +  A   G   +  +L
Sbjct: 140 ATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 49/166 (29%)

Query: 111 SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
           S     + A           ++   +                                  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSL--------------------------------- 32

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
                +      TALH A   G+ + V+ LL L   V+               G +PLH 
Sbjct: 33  ---ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA----------GWSPLHI 79

Query: 228 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           AA  G  +  + LL +GA   ++N NG  PL  A    RH +  +L
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232
           +     I   ++A      +  + +L   +  +                 T LH+A   G
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQD----------SRTALHWACSAG 51

Query: 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           + +  + LL  G      +  GW PL +A
Sbjct: 52  HTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           L  A  +    EAK L+     +   +      +PL  A   G   ++   L  G + +
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENKEE--KTPLQVAK--GGLGLILKRLAEGEEAS 230

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  139 bits (353), Expect = 6e-39
 Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 50/200 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
            +PL  A   G    +  L+EN   +  ++  G TAL+ A +     + + LL    NV 
Sbjct: 36  RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
             D+ SG+T L ++ + G+      ++   A+                            
Sbjct: 96  TKDF-SGKTPLMWSIIFGYSEMSYFLLEHGAN---------------------------- 126

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 222
                   VN     G T L +A+  G  + V+ LL+L A++SA              G 
Sbjct: 127 --------VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLT----------GL 168

Query: 223 TPLHFAACGGNLKCCQVLLS 242
           T    A   G  +  ++   
Sbjct: 169 TAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  128 bits (324), Expect = 9e-35
 Identities = 46/223 (20%), Positives = 71/223 (31%), Gaps = 56/223 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
                  K  N+ +  L       N R+   +T LM AC  G    +  L+     +   
Sbjct: 11  VEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK 64

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           D   G TAL +A  N  +     ++   ++                              
Sbjct: 65  DI-EGSTALIWAVKNNRLGIAEKLLSKGSN------------------------------ 93

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
                 VN     G T L  + + GY +    LL+  ANV+               G TP
Sbjct: 94  ------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE----------GETP 137

Query: 225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           L  A+  G  +  + LL  GA   + +  G      AR++GR 
Sbjct: 138 LIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  119 bits (301), Expect = 1e-31
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 54/204 (26%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
           +S+  +     L+ A   G       L+           K    G  ++ L +A      
Sbjct: 32  DSYNRTP----LMVACMLGMENAIDKLVENFDKLE---DK-DIEG--STALIWAVKNNRL 81

Query: 59  EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
            I   LL  G++VN++++ G+T LM +  +G+ E+   LL    NV   +   G T L  
Sbjct: 82  GIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-EGETPLIV 140

Query: 119 AAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 175
           A+  G    ++ ++   AD                                    ++   
Sbjct: 141 ASKYGRSEIVKKLLELGAD------------------------------------ISARD 164

Query: 176 DGGITALHMAALNGYFDCVQLLLD 199
             G+TA   A + G  + +++  +
Sbjct: 165 LTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 86.3 bits (215), Expect = 9e-20
 Identities = 38/199 (19%), Positives = 56/199 (28%), Gaps = 56/199 (28%)

Query: 72  NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
           +  +  G+            + +  L  +R +         RT L  A + G    I  +
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDS-------YNRTPLMVACMLGMENAIDKL 54

Query: 132 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 188
           V                                         +      G TAL  A  N
Sbjct: 55  VENFDK------------------------------------LEDKDIEGSTALIWAVKN 78

Query: 189 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 248
                 + LL   +NV+   F           G TPL ++   G  +    LL  GA+  
Sbjct: 79  NRLGIAEKLLSKGSNVNTKDFS----------GKTPLMWSIIFGYSEMSYFLLEHGANVN 128

Query: 249 SLNCNGWLPLDVARMWGRH 267
             N  G  PL VA  +GR 
Sbjct: 129 DRNLEGETPLIVASKYGRS 147

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  137 bits (348), Expect = 8e-38
 Identities = 38/221 (17%), Positives = 62/221 (28%), Gaps = 46/221 (20%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            L  AA  G  E+V   ++   D +  N  G TAL  A    ++ +V  L+    NV   
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
           D   G T LH AA          +V                      G+++ +       
Sbjct: 84  DS-HGWTPLHCAASCNDTVICMALV--------------------QHGAAIFATTLSD-- 120

Query: 168 SKFVNKAADGGITALHMAAL--NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 225
                     G TA         GY DC   L D+  ++  +                 L
Sbjct: 121 ----------GATAFEKCDPYREGYADCATYLADVEQSMGLMN----------SGAVYAL 160

Query: 226 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
              +     +          + +  +         A + G+
Sbjct: 161 WDYSAEFGDE-LSFREGESVTVLRRDGPEETDWWWAALHGQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  118 bits (297), Expect = 1e-30
 Identities = 35/206 (16%), Positives = 52/206 (25%), Gaps = 54/206 (26%)

Query: 61  VALLLENGADVNSRN---YCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALH 117
           +  +L                   L+ A   G  EVVQ  +    + ++ +   G TALH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-EGITALH 59

Query: 118 FAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA 174
            A    +   +  ++   A+                                    VN  
Sbjct: 60  NAICGANYSIVDFLITAGAN------------------------------------VNSP 83

Query: 175 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG--G 232
              G T LH AA          L+   A + A T            G+T          G
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD---------GATAFEKCDPYREG 134

Query: 233 NLKCCQVLLSRGASRMSLNCNGWLPL 258
              C   L     S   +N      L
Sbjct: 135 YADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  117 bits (295), Expect = 2e-30
 Identities = 38/223 (17%), Positives = 62/223 (27%), Gaps = 48/223 (21%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L+ AA  G+    +  +      ++ +  G   + LH A    +  IV  L+  GA+VNS
Sbjct: 25  LLDAALTGELEVVQQAVKEMNDPSQPNEEG--ITALHNAICGANYSIVDFLITAGANVNS 82

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV--NGHVRCIRLV 131
            +  G T L  A       +   L+     +       G TA         G+  C    
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY- 141

Query: 132 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
                                   + V+           +     G + AL   +   + 
Sbjct: 142 -----------------------LADVEQS---------MGLMNSGAVYALWDYS-AEFG 168

Query: 192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 234
           D +         V           D  G   T   +AA  G  
Sbjct: 169 DELSFREGESVTVLR--------RD--GPEETDWWWAALHGQE 201

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 27/163 (16%), Positives = 45/163 (27%), Gaps = 39/163 (23%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYC-GQTALMQACRY--GHWEVVQTLLLFRCNV 104
           PLH AA+     I   L+++GA + +     G TA  +   Y  G+ +    L     ++
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              +      AL   +                                G+  +V  +   
Sbjct: 150 GLMNS-GAVYALWDYSAEFGDELSFRE---------------------GESVTVLRRDGP 187

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCV-QLLLDLHANVSA 206
                          T    AAL+G    V +    L   V  
Sbjct: 188 -------------EETDWWWAALHGQEGYVPRNYFGLFPRVKP 217

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
             +A    +  L  AAL G  + VQ  +    + S               G T LH A C
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE----------GITALHNAIC 63

Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
           G N      L++ GA+  S + +GW PL  A    
Sbjct: 64  GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN 98

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 1/70 (1%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            L   +A+  +E ++        V  R+   +T    A  +G    V           + 
Sbjct: 159 ALWDYSAEFGDE-LSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKP 217

Query: 108 DYLSGRTALH 117
                +   H
Sbjct: 218 QRSKVKHHHH 227

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  134 bits (341), Expect = 2e-37
 Identities = 46/204 (22%), Positives = 59/204 (28%), Gaps = 52/204 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           +  L  AA  G  E V  L      +         T L  A  Y    VV+ LL    +V
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
              D   G   LH A   GH     L+V   A                            
Sbjct: 69  HAKDK-GGLVPLHNACSYGHYEVAELLVKHGAV--------------------------- 100

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
                    VN A     T LH AA  G ++  +LLL   A+ +               G
Sbjct: 101 ---------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD----------G 141

Query: 222 STPLHFAACGGNLKCCQVLLSRGA 245
           +TPL      G+     +L    A
Sbjct: 142 NTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  116 bits (294), Expect = 7e-31
 Identities = 53/208 (25%), Positives = 72/208 (34%), Gaps = 64/208 (30%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLN---------SPLHFAA 53
           NS         L+ AA+ GD    K L               +N         +PLHFAA
Sbjct: 5   NSEADRQ----LLEAAKAGDVETVKKLCTV----------QSVNCRDIEGRQSTPLHFAA 50

Query: 54  AKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGR 113
                 +V  LL++GADV++++  G   L  AC YGH+EV + L+     V  AD     
Sbjct: 51  GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKF 109

Query: 114 TALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 170
           T LH AA  G     +L++   AD                                    
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGAD------------------------------------ 133

Query: 171 VNKAADGGITALHMAALNGYFDCVQLLL 198
             K    G T L +   +G  D   LL 
Sbjct: 134 PTKKNRDGNTPLDLVK-DGDTDIQDLLR 160

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  115 bits (292), Expect = 1e-30
 Identities = 48/199 (24%), Positives = 71/199 (35%), Gaps = 54/199 (27%)

Query: 68  GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVR 126
           GA  NS        L++A + G  E V+ L   +  N    +     T LHFAA    V 
Sbjct: 1   GAMGNSE---ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVS 56

Query: 127 CIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183
            +  ++   AD                                    V+    GG+  LH
Sbjct: 57  VVEYLLQHGAD------------------------------------VHAKDKGGLVPLH 80

Query: 184 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243
            A   G+++  +LL+   A V+                 TPLH AA  G  + C++LL  
Sbjct: 81  NACSYGHYEVAELLVKHGAVVNVADLW----------KFTPLHEAAAKGKYEICKLLLQH 130

Query: 244 GASRMSLNCNGWLPLDVAR 262
           GA     N +G  PLD+ +
Sbjct: 131 GADPTKKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.5 bits (187), Expect = 3e-16
 Identities = 30/155 (19%), Positives = 42/155 (27%), Gaps = 42/155 (27%)

Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
               L  AA  G V                E +         +                 
Sbjct: 8   ADRQLLEAAKAGDV----------------ETVKKLCTVQSVN----------------C 35

Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
                   T LH AA       V+ LL   A+V A              G  PLH A   
Sbjct: 36  RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----------GLVPLHNACSY 85

Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
           G+ +  ++L+  GA     +   + PL  A   G+
Sbjct: 86  GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  133 bits (337), Expect = 4e-37
 Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 51/199 (25%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGA   +    G + L  A +YGH+   + LL    + 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
                   RT LH AA  GH   + +++   AD                           
Sbjct: 61  DARTK-VDRTPLHMAASEGHANIVEVLLKHGAD--------------------------- 92

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG 221
                    VN      +TALH A  + + + V+LL+   A+V   +             
Sbjct: 93  ---------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF----------C 133

Query: 222 STPLHFAACGGNLKCCQVL 240
            T    +   GN    ++L
Sbjct: 134 KTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  120 bits (304), Expect = 2e-32
 Identities = 47/187 (25%), Positives = 69/187 (36%), Gaps = 43/187 (22%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L+ AAR G   E ++L+            G   SPLH AA  GH     +LL  G   ++
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTT-DWLG--TSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV- 132
           R    +T L  A   GH  +V+ LL    +V   D L   TALH+A  + H   + L++ 
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML-KMTALHWATEHNHQEVVELLIK 121

Query: 133 --ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 190
             AD                                    V+  +    TA  ++  NG 
Sbjct: 122 YGAD------------------------------------VHTQSKFCKTAFDISIDNGN 145

Query: 191 FDCVQLL 197
            D  ++L
Sbjct: 146 EDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.1 bits (186), Expect = 3e-16
 Identities = 31/158 (19%), Positives = 45/158 (28%), Gaps = 50/158 (31%)

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
               L  AA  G    +R+++   A                                   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAP---------------------------------- 27

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228
                    G + LH+AA  G+F   ++LL    +  A T              TPLH A
Sbjct: 28  --FTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV----------DRTPLHMA 74

Query: 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
           A  G+    +VLL  GA   + +      L  A     
Sbjct: 75  ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH 112

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.3 bits (171), Expect = 3e-14
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 176 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 235
           D G   L  AA  G  D V++L+   A  +               G++PLH AA  G+  
Sbjct: 1   DLG-KKLLEAARAGQDDEVRILMANGAPFTTDWL-----------GTSPLHLAAQYGHFS 48

Query: 236 CCQVLLSRGASRMSLNCNGWLPLDVA 261
             +VLL  G SR +       PL +A
Sbjct: 49  TTEVLLRAGVSRDARTKVDRTPLHMA 74

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  131 bits (333), Expect = 1e-36
 Identities = 36/190 (18%), Positives = 54/190 (28%), Gaps = 55/190 (28%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            L  AAA+G  E V  LLE GA+ N+ N  G+  +      G   V + LLL       A
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCA 73

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           D  +    +H AA  G +  + ++    A                               
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGAR------------------------------ 103

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 224
                 ++     G   + +A   G+ D  + L                       GS  
Sbjct: 104 ------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR---------------GSNH 142

Query: 225 LHFAACGGNL 234
               A  G  
Sbjct: 143 ARIDAAEGPS 152

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  117 bits (296), Expect = 2e-31
 Identities = 33/205 (16%), Positives = 52/205 (25%), Gaps = 59/205 (28%)

Query: 65  LENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           +E  A  +         L  A   G  E V+ LL    N    +   GR  +      G 
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MGS 56

Query: 125 VRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT- 180
            R   L++   A+                                     N A    +T 
Sbjct: 57  ARVAELLLLHGAE------------------------------------PNCADPATLTR 80

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
            +H AA  G+ D + +L    A +                G  P+  A   G+    + L
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGARLDVRD----------AWGRLPVDLAEELGHRDVARYL 130

Query: 241 LSRGASRMSLNCNGWLPLDVARMWG 265
            +           G     +    G
Sbjct: 131 RAAAG-----GTRGSNHARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 99.5 bits (249), Expect = 7e-25
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 44  GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCN 103
            L  P+H AA +G  + + +L   GA ++ R+  G+  +  A   GH +V + L      
Sbjct: 77  TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136

Query: 104 VTRADYLSGRTALHFAAVNGH 124
                   G       A  G 
Sbjct: 137 TR------GSNHARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 99.1 bits (248), Expect = 9e-25
 Identities = 33/181 (18%), Positives = 50/181 (27%), Gaps = 45/181 (24%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L +AA  G   E + LL+        +++G    P+      G   +  LLL +GA+ N 
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYG--RRPIQVMM-MGSARVAELLLLHGAEPNC 72

Query: 74  RNYCGQT-ALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
            +    T  +  A R G  + +  L      +   D   GR  +  A   GH    R   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARY-- 129

Query: 133 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYF 191
                                                    A    G     + A  G  
Sbjct: 130 -------------------------------------LRAAAGGTRGSNHARIDAAEGPS 152

Query: 192 D 192
           D
Sbjct: 153 D 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.5 bits (153), Expect = 7e-12
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 9/82 (10%)

Query: 14  LVSAARDGDFVE-AKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           +  AAR+G F++   +L      L     +G    P+  A   GH ++   L        
Sbjct: 82  VHDAAREG-FLDTLVVLHRAGARLDVRDAWG--RLPVDLAEELGHRDVARYLRAAAGGTR 138

Query: 73  SRNYCGQTALMQACRYGHWEVV 94
                G          G  ++ 
Sbjct: 139 -----GSNHARIDAAEGPSDIP 155

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  137 bits (345), Expect = 2e-36
 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 31/204 (15%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQT----LLLFR 101
           N+PLH+  +  + E+V  L+++G++    +  G++ L++A +  +     T    L    
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191

Query: 102 CNVTRADYLSGRTALHFAAVN----GHVRCIRL---VVADFVPSVPFEVMNTQIEGDRGD 154
             +   D    RT LH   +     G     +    ++  ++       + +        
Sbjct: 192 PCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 155 GSSVKSKCDQSA---------LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVS 205
            +    +   S          ++  +N     G T L++AA  G    V  LLD  A+  
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310

Query: 206 AVTFHYGTSMDLIGAGSTPLHFAA 229
                          G  P+ F A
Sbjct: 311 IANKS----------GLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  108 bits (271), Expect = 2e-26
 Identities = 41/244 (16%), Positives = 70/244 (28%), Gaps = 45/244 (18%)

Query: 46  NSPLHFAAAKGHN-EIVALLLENGADVNS-RNYCGQTALMQACRYGHWEVVQTLLLFRCN 103
           N      +      E+         ++N   +  G T L       + E+V+ L+    N
Sbjct: 97  NQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 156

Query: 104 VTRADYLSGRTALHFAAVNGH---VRCIRLVVADFVPSVPFEVMNTQ------------- 147
               D   G + L  A  + +         ++    P +       +             
Sbjct: 157 RLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-----ILEDSMNRTILHHIII 210

Query: 148 IEGDRGDGSSVKSKCDQSALSKFVNKAA------DGGITALHMAALNGYFDCVQLLLDLH 201
             G  G  ++ K   D   +   V K             +          D +   LDL 
Sbjct: 211 TSGMTGCSAAAKYYLD-ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269

Query: 202 ANVSAVTFHYGTSMDLIGA----GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 257
             ++           ++ A    G T L+ AA  GN+     LL  GA     N +G  P
Sbjct: 270 WIIAN----------MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319

Query: 258 LDVA 261
           +D  
Sbjct: 320 VDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.3 bits (169), Expect = 4e-13
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
             +  +        E + L       +N+++  G T L  A R G+  +V  LL +  + 
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309

Query: 105 TRADYLSGRTALHFAA 120
             A+  SG   + F A
Sbjct: 310 FIANK-SGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.5 bits (128), Expect = 7e-08
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232
           +         H++  +   +      +   N++     +G         +TPLH+     
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG---------NTPLHWLTSIA 142

Query: 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           NL+  + L+  G++R+  +  G   L  A
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKA 171

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  133 bits (336), Expect = 1e-35
 Identities = 45/241 (18%), Positives = 71/241 (29%), Gaps = 62/241 (25%)

Query: 12  ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV 71
             L+  AR  D ++  +         K  T       LH A  + +  +V LL+ENGADV
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQT------ALHIAIERRNMTLVTLLVENGADV 127

Query: 72  NSRN--------------YCGQTALMQACRYGHWEVVQTLL---LFRCNVTRADYLSGRT 114
            +                Y G+  L  A       +V+ LL       +++  D   G T
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS-VGNT 186

Query: 115 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDG--SSVKSKCDQSALSKFVN 172
            LH                         V NT+      +              L +  N
Sbjct: 187 VLHALVEVADN----------------TVDNTKFVTSMYNEILILGAKLHPTLKLEEITN 230

Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232
           +    G+T L +AA +G    +  +L    +                      H AA   
Sbjct: 231 RK---GLTPLALAASSGKIGVLAYILQREIH-----------------EPECRHAAAHHH 270

Query: 233 N 233
           +
Sbjct: 271 H 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  120 bits (302), Expect = 5e-31
 Identities = 46/296 (15%), Positives = 72/296 (24%), Gaps = 80/296 (27%)

Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYST--------FGGLNSPLHFAAA---KGHNE 59
              +  A    +  E + LL       K  T         G   + L  A      G N+
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETG--KTCLLKAMLNLHNGQND 71

Query: 60  IVALLLENGAD-----------VNSRNYCGQTALMQACRYGHWEVVQTLL---------- 98
            +ALLL+                    Y GQTAL  A    +  +V  L+          
Sbjct: 72  TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131

Query: 99  ---LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDG 155
               F+    R  +  G   L  AA    +  ++ ++                       
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL------------------QNSW- 172

Query: 156 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL-----DLHANVSAVTFH 210
                  D       ++     G T LH                    +    + A    
Sbjct: 173 ----QPAD-------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221

Query: 211 YGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
                ++    G TPL  AA  G +     +L R         +       A    
Sbjct: 222 TLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (278), Expect = 1e-27
 Identities = 39/215 (18%), Positives = 65/215 (30%), Gaps = 39/215 (18%)

Query: 68  GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR-------CNVTRADYLSGRTALHFAA 120
            A         + ++  A    + + +++LL F         +    D  +G+T L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 121 VN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG 177
           +N   G    I L++                  D    +    +     ++     +   
Sbjct: 63  LNLHNGQNDTIALLL------------------DVARKTDSLKQF----VNASYTDSYYK 100

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVT----FHYGTSMDLIGAGSTPLHFAACGGN 233
           G TALH+A        V LL++  A+V A      F           G  PL  AAC   
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 234 LKCCQVLLSRGASRMSLNC---NGWLPLDVARMWG 265
           L   + LL        ++     G   L       
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.4 bits (183), Expect = 5e-15
 Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 29/165 (17%)

Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
            R ++  A    + + +  ++                        S K   D        
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQ-------------------RSKKRLTDSEF----- 48

Query: 172 NKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSM-DLIGAGSTPLHF 227
            K  + G T L  A LN   G  D + LLLD+     ++      S  D    G T LH 
Sbjct: 49  -KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

Query: 228 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL 272
           A    N+    +L+  GA   +     +      R        PL
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  127 bits (322), Expect = 3e-35
 Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 41/162 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            LH A+ KG    V  LL+NG+D N +++ G T L +AC +GH +VV+ LL  +  V   
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
            Y    + LH AA NGHV  ++L++   A                               
Sbjct: 73  GY-QNDSPLHDAAKNGHVDIVKLLLSYGAS------------------------------ 101

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 206
                  N     G+  +           + L    + + SA
Sbjct: 102 ------RNAVNIFGLRPVDYTDDESMKSLLLLPEK-NESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  111 bits (281), Expect = 2e-29
 Identities = 40/182 (21%), Positives = 62/182 (34%), Gaps = 51/182 (28%)

Query: 68  GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
           G D  + N+ G+T L  A   G    V+ LL    +    D+ +G T LH A  +GH++ 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPLHEACNHGHLKV 58

Query: 128 IRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM 184
           + L++   A                                     VN       + LH 
Sbjct: 59  VELLLQHKAL------------------------------------VNTTGYQNDSPLHD 82

Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
           AA NG+ D V+LLL   A+ +AV             G  P+ +           +     
Sbjct: 83  AAKNGHVDIVKLLLSYGASRNAVNIF----------GLRPVDYTDDESMKSLLLLPEKNE 132

Query: 245 AS 246
           +S
Sbjct: 133 SS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  106 bits (267), Expect = 2e-27
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 17  AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           A+  GD    + LL    D N    K     G  +PLH A   GH ++V LLL++ A VN
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPN---VK--DHAG-WTPLHEACNHGHLKVVELLLQHKALVN 70

Query: 73  SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
           +  Y   + L  A + GH ++V+ LL +  +    +   G   + +         + L
Sbjct: 71  TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDDESMKSLLLL 127

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 96.7 bits (242), Expect = 5e-24
 Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 49/153 (32%)

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
           G T LH A++ G +  +  ++   +D                                  
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSD---------------------------------- 35

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228
              N     G T LH A  +G+   V+LLL   A V+   +             +PLH A
Sbjct: 36  --PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDA 83

Query: 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
           A  G++   ++LLS GASR ++N  G  P+D  
Sbjct: 84  AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
                 G  T LH+A++ G    V+ LL   ++ +              AG TPLH A  
Sbjct: 4   PFTNHRG-ETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----------AGWTPLHEACN 52

Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
            G+LK  ++LL   A   +       PL  A   G  
Sbjct: 53  HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV 89

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 4/26 (15%), Positives = 11/26 (42%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNS 73
           P+ +   +    ++ L  +N +   S
Sbjct: 112 PVDYTDDESMKSLLLLPEKNESSSAS 137

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  130 bits (329), Expect = 7e-35
 Identities = 47/270 (17%), Positives = 71/270 (26%), Gaps = 62/270 (22%)

Query: 12  ERLVSAARDGDFVEAKMLLDCNPCLAKYST--------FGGLNSPLHFAAA---KGHNEI 60
           +RL S    G   E   LL+     +KY T         G   + L  A      G N  
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTG--KTCLMKAVLNLQDGVNAC 61

Query: 61  VALLLENG-----------ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADY 109
           +  LL+             A      Y G +AL  A      + V+ L+    +V     
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 110 LS------------GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 157
                         G   L  AA       +  ++                   +     
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE---------------NPHQPASLE 166

Query: 158 VKSKCDQSALSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMD 216
                  + L   V  A +    +AL +   +G       L                   
Sbjct: 167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN-------- 218

Query: 217 LIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246
               G TPL  AA  G ++  + +L R  S
Sbjct: 219 --HQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  121 bits (304), Expect = 2e-31
 Identities = 46/249 (18%), Positives = 77/249 (30%), Gaps = 50/249 (20%)

Query: 48  PLHFAAAKGHNEIVALLLE--------NGADVNSRNYCGQTALMQA---CRYGHWEVVQT 96
            L    ++G  E +  LLE              +    G+T LM+A    + G    +  
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 97  LLLFRCNV----------TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT 146
           LL    +              ++  G +ALH A     ++C++L+V +            
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN------------ 112

Query: 147 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD---LHAN 203
                   G+ V  +       K        G   L +AA    +D V  LL+     A+
Sbjct: 113 --------GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164

Query: 204 VSAVT------FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 257
           + A         H    +      ++ L      G L+    L          N  G  P
Sbjct: 165 LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP 224

Query: 258 LDVARMWGR 266
           L +A   G+
Sbjct: 225 LKLAAKEGK 233

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  116 bits (292), Expect = 9e-30
 Identities = 48/223 (21%), Positives = 76/223 (34%), Gaps = 40/223 (17%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +    G +A    L+   +D    +  +   C     ++  + G +  LH A  K   + 
Sbjct: 52  LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT---DEF--YQGHS-ALHIAIEKRSLQC 105

Query: 61  VALLLENGADVNSRN-------------YCGQTALMQACRYGHWEVVQTLL---LFRCNV 104
           V LL+ENGADV+ R              Y G+  L  A     W+VV  LL       ++
Sbjct: 106 VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D L G T LH   +            +   +         I    G        C  
Sbjct: 166 EATDSL-GNTVLHALVMIAD---------NSPENSAL-----VIHMYDGLLQMGARLCPT 210

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 207
             L +  N     G+T L +AA  G  +  + +L    + +A 
Sbjct: 211 VQLEEISNHQ---GLTPLKLAAKEGKIEIFRHILQREFSGAAA 250

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (256), Expect = 6e-25
 Identities = 41/202 (20%), Positives = 57/202 (28%), Gaps = 42/202 (20%)

Query: 78  GQTALMQACRYGHWEVVQTLLLF--------RCNVTRADYLSGRTALHFAAVN---GHVR 126
            +  L      G  E +  LL +          +       +G+T L  A +N   G   
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS-TGKTCLMKAVLNLQDGVNA 60

Query: 127 CIR-LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 185
           CI  L+  D     P  ++N Q                              G +ALH+A
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQ-----------------------CTDEFYQGHSALHIA 97

Query: 186 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA---GSTPLHFAACGGNLKCCQVLLS 242
                  CV+LL++  A+V                   G  PL  AAC         LL 
Sbjct: 98  IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157

Query: 243 RGASRMSLN---CNGWLPLDVA 261
                 SL      G   L   
Sbjct: 158 NPHQPASLEATDSLGNTVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 27/165 (16%), Positives = 44/165 (26%), Gaps = 30/165 (18%)

Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
            R  L      G    +  ++     +  +   +                          
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS-------------------------A 36

Query: 172 NKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSM-DLIGAGSTPLHF 227
                 G T L  A LN   G   C+  LL +  +             D    G + LH 
Sbjct: 37  YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI 96

Query: 228 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL 272
           A    +L+C ++L+  GA      C  +        +    L PL
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL-PL 140

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           LV    DG       L          +  G   +PL  AA +G  EI   +L+      +
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEISNHQG--LTPLKLAAKEGKIEIFRHILQREFSGAA 249

Query: 74  RN 75
            +
Sbjct: 250 AH 251

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  124 bits (315), Expect = 2e-34
 Identities = 33/159 (20%), Positives = 52/159 (32%), Gaps = 40/159 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            L  AAA+G  E V  LLE GAD N+ N  G+  +      G  +V + LLL       A
Sbjct: 15  GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA 73

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           D  +    +H AA  G +  + ++    A                               
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGAR------------------------------ 103

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 203
                 ++     G   + +A   G+ D  + L     +
Sbjct: 104 ------LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  119 bits (300), Expect = 4e-32
 Identities = 27/182 (14%), Positives = 47/182 (25%), Gaps = 52/182 (28%)

Query: 68  GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
              ++         L  A   G  E V+ LL    +    +   GR  +      G  + 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR-FGRRPIQVMM-MGSAQV 59

Query: 128 IRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALH 183
             L++   A+                                     N A    +T  +H
Sbjct: 60  AELLLLHGAE------------------------------------PNCADPATLTRPVH 83

Query: 184 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 243
            AA  G+ D + +L    A +                G  P+  A   G+    + L + 
Sbjct: 84  DAAREGFLDTLVVLHRAGARLDVCD----------AWGRLPVDLAEEQGHRDIARYLHAA 133

Query: 244 GA 245
             
Sbjct: 134 TG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  100 bits (252), Expect = 2e-25
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 5/118 (4%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L +AA  G     + LL+        + FG    P+      G  ++  LLL +GA+ N 
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFG--RRPIQVMM-MGSAQVAELLLLHGAEPNC 72

Query: 74  RNYCGQT-ALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
            +    T  +  A R G  + +  L      +   D   GR  +  A   GH    R 
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARY 129

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 33/158 (20%), Positives = 44/158 (27%), Gaps = 49/158 (31%)

Query: 111 SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
           S    L  AA  G V  +R ++   AD                                 
Sbjct: 11  SSDAGLATAAARGQVETVRQLLEAGAD--------------------------------- 37

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
               N     G   + +    G     +LLL   A  +       T          P+H 
Sbjct: 38  ---PNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLT---------RPVHD 84

Query: 228 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
           AA  G L    VL   GA     +  G LP+D+A   G
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG 122

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 86.0 bits (214), Expect = 3e-20
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 44  GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLL 98
            L  P+H AA +G  + + +L   GA ++  +  G+  +  A   GH ++ + L 
Sbjct: 77  TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           ++         L  AA  G  + V+ LL+  A+ +A+             G  P+     
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRF----------GRRPIQVMMM 54

Query: 231 GGNLKCCQVLLSRGASRMSLNCNGW-LPLDVARMWG 265
            G+ +  ++LL  GA     +      P+  A   G
Sbjct: 55  -GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG 89

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 14  LVSAARDGDFVE-AKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           +  AAR+G F++   +L      L     +G    P+  A  +GH +I   L     D
Sbjct: 82  VHDAAREG-FLDTLVVLHRAGARLDVCDAWG--RLPVDLAEEQGHRDIARYLHAATGD 136

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  123 bits (312), Expect = 6e-34
 Identities = 59/155 (38%), Positives = 77/155 (49%), Gaps = 40/155 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PLH AA  GH E+V LLLE GADVN+++  G+T L  A R GH EVV+ LL    +V   
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
           D  +GRT LH AA NGH+  ++L++   AD                              
Sbjct: 65  DK-NGRTPLHLAARNGHLEVVKLLLEAGAD------------------------------ 93

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 199
                 VN     G T LH+AA NG+ + V+LLL+
Sbjct: 94  ------VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  110 bits (279), Expect = 3e-29
 Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 50/171 (29%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---AD 134
           G+T L  A R GH EVV+ LL    +V   D  +GRT LH AA NGH+  ++L++   AD
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 194
                                               VN     G T LH+AA NG+ + V
Sbjct: 61  ------------------------------------VNAKDKNGRTPLHLAARNGHLEVV 84

Query: 195 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
           +LLL+  A+V+A   +          G TPLH AA  G+L+  ++LL  GA
Sbjct: 85  KLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 88.6 bits (221), Expect = 2e-21
 Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 49/158 (31%)

Query: 111 SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
           +GRT LH AA NGH+  ++L++   AD                                 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------------- 27

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
              VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH 
Sbjct: 28  ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHL 74

Query: 228 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
           AA  G+L+  ++LL  GA   + + NG  PL +A   G
Sbjct: 75  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 15/22 (68%), Positives = 16/22 (72%)

Query: 48  PLHFAAAKGHNEIVALLLENGA 69
           PLH AA  GH E+V LLLE GA
Sbjct: 104 PLHLAARNGHLEVVKLLLEAGA 125

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  122 bits (308), Expect = 8e-33
 Identities = 26/203 (12%), Positives = 58/203 (28%), Gaps = 40/203 (19%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFA----AAKGHNEIVALLLENGA 69
           + +AA  G + +   L +      +       ++ L+        +   +I   L+  GA
Sbjct: 10  VSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 70  DVNSRNYCGQTALMQACRYGHWEVVQTLLLFR------CNVTRADYLSGRTALHFAAVNG 123
           D+ SR   G T      + G  ++  T  L +       ++T       +  +     N 
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNY 125

Query: 124 HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183
                 +   + +P                     +S          +      G+TAL 
Sbjct: 126 F-----VDENEMIPLYKLIF--------------SQSGLQ-------LLIKDKWGLTALE 159

Query: 184 MAALNGYFDCVQLLLDLHANVSA 206
                     ++++ D     + 
Sbjct: 160 FVKRCQKPIALKMMEDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  115 bits (289), Expect = 5e-30
 Identities = 23/209 (11%), Positives = 43/209 (20%), Gaps = 48/209 (22%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNY---CGQTALMQACRYGHWEVVQTLLLFRCN 103
             +  AA  G  E    L E G +              L        +++   L+    +
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 104 VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
           +       G T        G                  E+    +E  +G         D
Sbjct: 68  IKSRTK-EGTTLFFPLFQGGGNDITGTT----------ELCKIFLE--KG--------AD 106

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDC------VQLLLDLH-ANVSAVTFHYGTSMD 216
                  +          +     N + D        +L+       +            
Sbjct: 107 -------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW------ 153

Query: 217 LIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
               G T L F          +++     
Sbjct: 154 ----GLTALEFVKRCQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 94.0 bits (234), Expect = 2e-22
 Identities = 18/144 (12%), Positives = 47/144 (32%), Gaps = 24/144 (16%)

Query: 2   GNSFGCSASGERLVSAARDGDFVEAKMLLD--CNPCLAKYSTFGGLNSPLHFAAAKGHNE 59
            ++         L +   +  +  +  L++   +   ++ +  G   +        G N+
Sbjct: 38  KSNILYDV----LRNNNDEARYKISMFLINKGADIK-SR-TKEG--TTLFFPLFQGGGND 89

Query: 60  IVA------LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR-------CNVTR 106
           I        + LE GAD+ +     +  + +       +  + + L++         +  
Sbjct: 90  ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

Query: 107 ADYLSGRTALHFAAVNGHVRCIRL 130
            D   G TAL F         +++
Sbjct: 150 KDK-WGLTALEFVKRCQKPIALKM 172

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 19/215 (8%), Positives = 50/215 (23%), Gaps = 56/215 (26%)

Query: 72  NSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 131
           N+ +      +  A   G +E    L          + +     L+    N +      +
Sbjct: 2   NAMS--EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKI 57

Query: 132 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
               +              ++G         D       +      G T        G  
Sbjct: 58  SMFLI--------------NKG--------AD-------IKSRTKEGTTLFFPLFQGGGN 88

Query: 192 D------CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ------- 238
           D        ++ L+  A+++A+                 +        +   +       
Sbjct: 89  DITGTTELCKIFLEKGADITALYKP----------YKIVVFKNIFNYFVDENEMIPLYKL 138

Query: 239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           +    G   +  +  G   L+  +   +     ++
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 20/165 (12%), Positives = 42/165 (25%), Gaps = 46/165 (27%)

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
           ++ +S    +  AA+ G       +                       G   K    +S 
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEK--------------------GYEDKESVLKSN 40

Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
           +              L        +     L++  A++ + T            G+T   
Sbjct: 41  I----------LYDVLRNNNDEARYKISMFLINKGADIKSRTKE----------GTTLFF 80

Query: 227 FAACGGN------LKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 265
               GG        + C++ L +GA   +L     + +       
Sbjct: 81  PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 3/30 (10%), Positives = 9/30 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRN 75
            + L F         + ++ +     N + 
Sbjct: 155 LTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  119 bits (301), Expect = 3e-32
 Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 40/156 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
              L  AA  G ++ V +L+ NGADVN+++  G T L  A  +GH E+V+ LL    +V 
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
             D   G T LH AA  GH+    +++   AD                            
Sbjct: 75  AVDA-IGFTPLHLAAFIGHLEIAEVLLKHGAD---------------------------- 105

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 198
                   VN     G TA  ++  NG  D  ++L 
Sbjct: 106 --------VNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  103 bits (259), Expect = 2e-26
 Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 11/115 (9%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           L+ AAR G   E ++L+    D N   AK   +G   +PL+ A A GH EIV +LL+NGA
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN---AK-DEYG--LTPLYLATAHGHLEIVEVLLKNGA 71

Query: 70  DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH 124
           DVN+ +  G T L  A   GH E+ + LL    +V   D   G+TA   +  NG+
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGN 125

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 95.1 bits (238), Expect = 1e-23
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 57/182 (31%)

Query: 64  LLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG 123
              +G+D+          L++A R G  + V+ L+    +V   D   G T L+ A  +G
Sbjct: 7   HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATAHG 58

Query: 124 HVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
           H+  + +++   AD                                    VN     G T
Sbjct: 59  HLEIVEVLLKNGAD------------------------------------VNAVDAIGFT 82

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 240
            LH+AA  G+ +  ++LL   A+V+A              G T    +   GN    ++L
Sbjct: 83  PLHLAAFIGHLEIAEVLLKHGADVNAQDKF----------GKTAFDISIGNGNEDLAEIL 132

Query: 241 LS 242
             
Sbjct: 133 QK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 78.2 bits (194), Expect = 2e-17
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 49/158 (31%)

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
               L  AA  G    +R+++   AD                                  
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGAD---------------------------------- 39

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228
             VN   + G+T L++A  +G+ + V++LL   A+V+AV             G TPLH A
Sbjct: 40  --VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI----------GFTPLHLA 87

Query: 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
           A  G+L+  +VLL  GA   + +  G    D++   G 
Sbjct: 88  AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.6 bits (169), Expect = 4e-14
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 11/93 (11%)

Query: 175 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 234
           +D G   L  AA  G  D V++L+   A+V+A   +          G TPL+ A   G+L
Sbjct: 12  SDLG-KKLLEAARAGQDDEVRILMANGADVNAKDEY----------GLTPLYLATAHGHL 60

Query: 235 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           +  +VLL  GA   +++  G+ PL +A   G  
Sbjct: 61  EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHL 93

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  115 bits (292), Expect = 3e-31
 Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 40/153 (26%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
           +    +A   G  + V   +  G DVN     G+  L  A   G  E+++ LLL   ++ 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 162
             D     T L  A   GHV C++L++   AD                            
Sbjct: 68  APDK-HHITPLLSAVYEGHVSCVKLLLSKGAD---------------------------- 98

Query: 163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQ 195
                          G+TA            +Q
Sbjct: 99  --------KTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  107 bits (271), Expect = 3e-28
 Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 15/126 (11%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
            S          + A ++GD  E K  +    D N         G    PLH+AA  G  
Sbjct: 4   GSMCDKE----FMWALKNGDLDEVKDYVAKGEDVN---RT-LEGG--RKPLHYAADCGQL 53

Query: 59  EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF 118
           EI+  LL  GAD+N+ +    T L+ A   GH   V+ LL    + T      G TA   
Sbjct: 54  EILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP-DGLTAFEA 112

Query: 119 AAVNGH 124
                 
Sbjct: 113 TDNQAI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 92.8 bits (232), Expect = 6e-23
 Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 49/153 (32%)

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
                 +A  NG +  ++  V    D                                  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGED---------------------------------- 32

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228
             VN+  +GG   LH AA  G  + ++ LL   A+++A   H            TPL  A
Sbjct: 33  --VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH----------HITPLLSA 80

Query: 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
              G++ C ++LLS+GA +     +G    +  
Sbjct: 81  VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
                  A  NG  D V+  +    +V+               G  PLH+AA  G L+  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG----------GRKPLHYAADCGQLEIL 56

Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGR 266
           + LL +GA   + + +   PL  A   G 
Sbjct: 57  EFLLLKGADINAPDKHHITPLLSAVYEGH 85

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  116 bits (292), Expect = 1e-29
 Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 41/226 (18%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVA 62
            S G + +   L+  A     +   +         +  T       LH A  +     V 
Sbjct: 57  LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQT------ALHIAIERRCKHYVE 110

Query: 63  LLLENGADVNSRN--------------YCGQTALMQACRYGHWEVVQTLL---LFRCNVT 105
           LL+E GADV+++               Y G+  L  A       +V  L      + ++ 
Sbjct: 111 LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR 170

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 165
           R D   G T LH                 FV  + ++++  +        + +    +  
Sbjct: 171 RQDS-RGNTVLHALVAIADNTR---ENTKFVTKM-YDLLLIK-------CAKLFPDTNLE 218

Query: 166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHY 211
           AL   +N     G++ L MAA  G     Q ++      +A   H+
Sbjct: 219 AL---LNND---GLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  113 bits (285), Expect = 9e-29
 Identities = 43/279 (15%), Positives = 71/279 (25%), Gaps = 79/279 (28%)

Query: 12  ERLVSAARDGDFVEAKMLL--------DCNPCLAKYSTFGGLNSPLHFAA---AKGHNEI 60
             L      G     + LL               +  + G   + L  A    + G N+ 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTG--KTCLPKALLNLSAGRNDT 64

Query: 61  VALLLENGAD-----------VNSRNYCGQTALMQACRYGHWEVVQTLL----------- 98
           + +LL+                    Y GQTAL  A        V+ L+           
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 99  --LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS 156
              F+       +  G   L  AA       +  +                   + G   
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT------------------ENG--- 163

Query: 157 SVKSKCDQSALSKFVNKAADGGITALHMAALNG---------YFDCVQLLLDLHANVSAV 207
               + D       + +    G T LH                     LLL   A +   
Sbjct: 164 --HKQAD-------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFP- 213

Query: 208 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246
             +    ++    G +PL  AA  G +   Q ++ R  +
Sbjct: 214 DTNLEALLNN--DGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  112 bits (283), Expect = 1e-28
 Identities = 46/260 (17%), Positives = 75/260 (28%), Gaps = 71/260 (27%)

Query: 48  PLHFAAAKG----HNEIVALLLENGADVNSRNYC----GQTALMQA---CRYGHWEVVQT 96
            L    ++G       +++ LL +   +    +     G+T L +A      G  + +  
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 97  LLLFRCNVT----------RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT 146
           LL                 R  Y  G+TALH A        + L+V              
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE------------- 114

Query: 147 QIEGDRGDGSSVKSKCDQSALS-KFVNKAADGGITALHMAALNGYFDCVQLLLD---LHA 202
                   G+ V ++        K        G   L +AA       V  L +     A
Sbjct: 115 -------KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167

Query: 203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVLLSRGAS------- 246
           ++                G+T LH      +          K   +LL + A        
Sbjct: 168 DLRRQDSR----------GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217

Query: 247 RMSLNCNGWLPLDVARMWGR 266
              LN +G  PL +A   G+
Sbjct: 218 EALLNNDGLSPLMMAAKTGK 237

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  104 bits (262), Expect = 2e-27
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PLH AA  GH E+V LLLE GADVN+++  G+T L  A R GH EVV+ LL    +V   
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 108 DYLSGRTALHFAAVNGHVRCIRL 130
           D  +GRT LH AA NGH+  ++L
Sbjct: 65  DK-NGRTPLHLAARNGHLEVVKL 86

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 81.6 bits (203), Expect = 2e-19
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLL 98
          PLH AA  GH E+V LLLE GADVN+++  G+T L  A R GH EVV+ LL
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.5 bits (200), Expect = 6e-19
 Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 49/138 (35%)

Query: 111 SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
           +GRT LH AA NGH+  ++L++   AD                                 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------------- 27

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
              VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH 
Sbjct: 28  ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHL 74

Query: 228 AACGGNLKCCQVLLSRGA 245
           AA  G+L+  ++LL  GA
Sbjct: 75  AARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 77.4 bits (192), Expect = 8e-18
 Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 40/125 (32%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---AD 134
           G+T L  A R GH EVV+ LL    +V   D  +GRT LH AA NGH+  ++L++   AD
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 194
                                               VN     G T LH+AA NG+ + V
Sbjct: 61  ------------------------------------VNAKDKNGRTPLHLAARNGHLEVV 84

Query: 195 QLLLD 199
           +LLL+
Sbjct: 85  KLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.8 bits (180), Expect = 4e-16
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA  G+L+  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVV 51

Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWG 265
           ++LL  GA   + + NG  PL +A   G
Sbjct: 52  KLLLEAGADVNAKDKNGRTPLHLAARNG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 15/22 (68%), Positives = 16/22 (72%)

Query: 48 PLHFAAAKGHNEIVALLLENGA 69
          PLH AA  GH E+V LLLE GA
Sbjct: 71 PLHLAARNGHLEVVKLLLEAGA 92

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  104 bits (263), Expect = 3e-27
 Identities = 36/83 (43%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PLH AA  GH E V  LL  GADVN+R+  G T L  A + GH E+V+ LL    +V   
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71

Query: 108 DYLSGRTALHFAAVNGHVRCIRL 130
               G T  H A  NGH   ++L
Sbjct: 72  SK-DGNTPEHLAKKNGHHEIVKL 93

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 96.3 bits (241), Expect = 3e-24
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 52/162 (32%)

Query: 68  GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC 127
           G    S++  G T L  A + GH E V+ LL    +V       G T LH AA NGH   
Sbjct: 1   GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEI 57

Query: 128 IRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM 184
           ++L++   AD                                    VN  +  G T  H+
Sbjct: 58  VKLLLAKGAD------------------------------------VNARSKDGNTPEHL 81

Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
           A  NG+ + V+LL    A+V+A ++            S   H
Sbjct: 82  AKKNGHHEIVKLLDAKGADVNARSWG----------SSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 91.7 bits (229), Expect = 2e-22
 Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PLH AA  GH EIV LLL  GADVN+R+  G T    A + GH E+V+ L     +V   
Sbjct: 45  PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

Query: 108 DYLSGRTALH 117
            +       H
Sbjct: 105 SW-GSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 85.5 bits (213), Expect = 2e-20
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 49/150 (32%)

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
           G T LH AA NGH   ++ ++   AD                                  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGAD---------------------------------- 34

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 228
             VN  +  G T LH+AA NG+ + V+LLL   A+V+A +            G+TP H A
Sbjct: 35  --VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD----------GNTPEHLA 82

Query: 229 ACGGNLKCCQVLLSRGASRMSLNCNGWLPL 258
              G+ +  ++L ++GA   + +       
Sbjct: 83  KKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 73.6 bits (182), Expect = 4e-16
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
              +  G T LH AA NG+ + V+ LL   A+V+A +            G+TPLH AA  
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD----------GNTPLHLAAKN 52

Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           G+ +  ++LL++GA   + + +G  P  +A+  G H
Sbjct: 53  GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHH 88

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 63.2 bits (155), Expect = 1e-12
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQ 84
           P H A   GH+EIV LL   GADVN+R++        
Sbjct: 78  PEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  101 bits (254), Expect = 4e-26
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVT 105
              L  AA  G ++ V +L+ NGADV +++  G T L  A R GH EVV+ LL    +V 
Sbjct: 25  GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84

Query: 106 RADYLSGRTALHFAAVNGHVRCIRLV 131
             D   G+TA   +  NG+     ++
Sbjct: 85  AQDK-FGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 96.9 bits (242), Expect = 2e-24
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 43/149 (28%)

Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS 111
            ++  H+   + L+  G+ + S        L++A R G  + V+ L+    +V   D  +
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDK-N 56

Query: 112 GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 168
           G T LH AA NGH+  ++L++   AD                                  
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGAD---------------------------------- 82

Query: 169 KFVNKAADGGITALHMAALNGYFDCVQLL 197
             V      G TA  ++  NG  D  ++L
Sbjct: 83  --VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 78.4 bits (194), Expect = 6e-18
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
           + +  +  +D G   L  AA  G  D V++L+   A+V+A   +          GSTPLH
Sbjct: 14  VPRGSHMGSDLG-KKLLEAARAGQDDEVRILMANGADVAAKDKN----------GSTPLH 62

Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
            AA  G+L+  ++LL  GA   + +  G    D++   G   L  +L
Sbjct: 63  LAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.3 bits (134), Expect = 8e-10
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 13/77 (16%)

Query: 185 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 244
            + + +      L+   +++ +                  L  AA  G     ++L++ G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS-------------DLGKKLLEAARAGQDDEVRILMANG 47

Query: 245 ASRMSLNCNGWLPLDVA 261
           A   + + NG  PL +A
Sbjct: 48  ADVAAKDKNGSTPLHLA 64

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  108 bits (270), Expect = 6e-26
 Identities = 32/206 (15%), Positives = 52/206 (25%), Gaps = 48/206 (23%)

Query: 46  NSPLHFAAAKGHN---EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRC 102
                 AA  G +   + + LLL +   V         A   A   GH  V+  L     
Sbjct: 93  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 152

Query: 103 NVTRAD-YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
               A        A   AA NGH+                 V              +   
Sbjct: 153 TEIMAMIQAENYHAFRLAAENGHL----------------HV--------------LNRL 182

Query: 162 CDQSALSKFVNKAADGGITALHMAAL-NGYFDCVQLLLDLHANVSA------------VT 208
           C+ +         A+    A   AA+  G+ + +  LLD    ++             V 
Sbjct: 183 CELAPTEATAMIQAENY-YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN 241

Query: 209 FHYGTSMDLIGAGSTPLHFAACGGNL 234
                 ++ +         +   G  
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVF 267

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  104 bits (261), Expect = 1e-24
 Identities = 38/264 (14%), Positives = 61/264 (23%), Gaps = 42/264 (15%)

Query: 14  LVSAARDG--DFVEAKMLLDC--NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
              AA +G    +    L +      +A              AA  GH  ++  L E   
Sbjct: 132 FRLAAENGHLHVL--NRLCELAPTEIMAMIQAEN--YHAFRLAAENGHLHVLNRLCELAP 187

Query: 70  DVNSRNY--CGQTALMQAC-RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126
              +         A   A    GH  V+  LL     +  A+              G   
Sbjct: 188 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI--------HEFEYGEKY 239

Query: 127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 186
               +                +   +    + K                  G   L    
Sbjct: 240 VNPFIA-------------RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286

Query: 187 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI-GAGSTPLHFAACGGNLKCCQVLLSRGA 245
                  +  +  L   +S            I G  +  L  A   GN   C +LLS  +
Sbjct: 287 RRNDEVLLDDIRFL---LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343

Query: 246 SRMSLNCNGWL------PLDVARM 263
                  N +        LD+  +
Sbjct: 344 VLALTKANNYYINETGGRLDLRAV 367

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.8 bits (194), Expect = 5e-16
 Identities = 24/211 (11%), Positives = 44/211 (20%), Gaps = 49/211 (23%)

Query: 53  AAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSG 112
               + E + + L    ++       Q   +    Y H+      L    +         
Sbjct: 42  MTLSYKEAIHIFLPGTKNME------QVRQLLCLYYAHYNRNAKQLWSDAHKKGIK---S 92

Query: 113 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN 172
                 AA+ G    +  +                          + S          V 
Sbjct: 93  EVICFVAAITGCSSALDTLC-----------------------LLLTSDEI-------VK 122

Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232
                   A  +AA NG+   +  L +L                           AA  G
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE--------NYHAFRLAAENG 174

Query: 233 NLKCCQVLLSRGASRMSLNCN--GWLPLDVA 261
           +L     L     +  +       +     A
Sbjct: 175 HLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 24/204 (11%), Positives = 48/204 (23%), Gaps = 44/204 (21%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
             +A   G       LLDC   L                   G   +   +  +   +  
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVML---------AYAEIHEFEYGEKYVNPFIARHVNRLKE 253

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
            +     A   +   G +++V           +++ L G   L           + L   
Sbjct: 254 MHD----AFKLSNPDGVFDLVT----------KSECLQGFYMLRNLIRRNDE--VLLDDI 297

Query: 134 DFVPSVPFEVMNTQIEGDRGDGSS-------------VKSKCDQSALSKFVNKAADGGIT 180
            F+ S+P            GD +                      ++             
Sbjct: 298 RFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA------N 351

Query: 181 ALHMAALNGYFDCVQLLLDLHANV 204
             ++    G  D   + L+ H + 
Sbjct: 352 NYYINETGGRLDLRAVALEHHHHH 375

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 69.2 bits (169), Expect = 4e-13
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 47  SPLHFAAAKGHN---EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCN 103
             LH A    +     +V  +++NG  ++++   G TAL  A  Y   + ++ LL  R  
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251

Query: 104 VTRADYLSGRTALHFAAVNGHVRCIRL 130
           V   +  +G TAL  A    H  C  L
Sbjct: 252 VGTVNE-AGETALDIARKKHHKECEEL 277

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 178 GITALHMAALNGY---FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 234
               LH+A           V  ++    ++ A              G+T LH+AA     
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD----------GNTALHYAALYNQP 239

Query: 235 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
            C ++LL   A   ++N  G   LD+AR       E LL
Sbjct: 240 DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 9e-09
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 15  VSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
           V  A          ++  N          G N+ LH+AA     + + LLL+  A V + 
Sbjct: 198 VKVANQASLPLVDFII-QNGGHLDAKAADG-NTALHYAALYNQPDCLKLLLKGRALVGTV 255

Query: 75  NYCGQTALMQACRYGHWEVVQTLLLFRCN 103
           N  G+TAL  A +  H E  + L   +  
Sbjct: 256 NEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 43/167 (25%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYC------GQTALMQACRYGHW---EVVQT 96
              L  A        V     NG D              +  L  A +  +     +V  
Sbjct: 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF 211

Query: 97  LLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS 156
           ++    ++       G TALH+AA+     C++L++                        
Sbjct: 212 IIQNGGHLDAKAA-DGNTALHYAALYNQPDCLKLLL------------------------ 246

Query: 157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 203
             K +     +++        G TAL +A    + +C +LL    A 
Sbjct: 247 --KGRALVGTVNE-------AGETALDIARKKHHKECEELLEQAQAG 284

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.5 bits (167), Expect = 5e-13
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 8   SASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKG---HNEI 60
           +A    L  A +  D            D    +   +      + LH A          I
Sbjct: 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 187

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
           V  L++N  +++ +   G TAL   C   + E ++ LL  + ++  A+  SG T L  A 
Sbjct: 188 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE-SGETPLDIAK 246

Query: 121 VNGHVRCIRL 130
              H  C  L
Sbjct: 247 RLKHEHCEEL 256

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 1/91 (1%)

Query: 13  RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
            L   + D   +     L  N       T  G ++ LH+     + E + LLL   A + 
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG-STALHYCCLTDNAECLKLLLRGKASIE 232

Query: 73  SRNYCGQTALMQACRYGHWEVVQTLLLFRCN 103
             N  G+T L  A R  H    + L      
Sbjct: 233 IANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 178 GITALHMAALNG---YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 234
             TALH+A  +        V  L+    N+   T            GST LH+     N 
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK----------GSTALHYCCLTDNA 218

Query: 235 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           +C ++LL   AS    N +G  PLD+A+       E LL
Sbjct: 219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 230
           ++K    G TALH   L    +C++LLL   A++               +G TPL  A  
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN----------ESGETPLDIAKR 247

Query: 231 GGNLKCCQVLLSRGASRMSLNCN 253
             +  C ++L    + R + + +
Sbjct: 248 LKHEHCEELLTQALSGRFNSHVH 270

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 7   CSASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHN---E 59
           C+   +RL +A  + D +          D    L            LH A    +     
Sbjct: 129 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 188

Query: 60  IVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 119
           +V  +++NG  ++++   G TAL  A  Y   + ++ LL  R  V   +  +G TAL  A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIA 247

Query: 120 AVNGHVRCIRLV 131
               H  C  L+
Sbjct: 248 RKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 178 GITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 234
               LH+A           V  ++    ++ A              G+T LH+AA     
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD----------GNTALHYAALYNQP 220

Query: 235 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
            C ++LL   A   ++N  G   LD+AR       E LL
Sbjct: 221 DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 1/117 (0%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
             ++            L     +   +      +PL  A A         LL+NGA+VN 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
            +  G+  L  A   GH  +    L    ++   D   GR  L  A    +   + L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTL 319

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.3 bits (135), Expect = 8e-09
 Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
             T L  A         + LL   ANV+               G  PLH A   G+    
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSA----------GRGPLHHATILGHTGLA 284

Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
            + L RGA   + +  G  PL +A       +  LL
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L+ A      +  + LL     + +  + G    PLH A   GH  +  L L+ GAD+ +
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAG--RGPLHHATILGHTGLACLFLKRGADLGA 296

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADY 109
           R+  G+  L  A    + ++V  L L +     A  
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.53
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.41
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.32
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.15
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.02
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.96
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	97.81
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	97.78
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	97.76
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	97.7
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	97.68
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	97.68
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	97.66
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	97.61
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.59
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	97.57
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	97.56
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	97.55
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	97.55
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.54
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	97.5
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	97.49
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	97.48
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	97.48
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	97.45
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.45
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.45
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	97.42
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	97.41
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	97.39
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.38
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.38
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	97.35
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	97.33
2ea5_A	68	Cell growth regulator with ring finger domain prot	97.3
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	97.29
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.28
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	97.23
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	97.22
1z6u_A	150	NP95-like ring finger protein isoform B; structura	97.18
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	97.17
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	97.17
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	97.16
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	97.11
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.1
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	97.09
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	97.05
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	96.96
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	96.96
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	96.92
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	96.91
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	96.9
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	96.89
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	96.84
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	96.81
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	96.74
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	96.71
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	96.71
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	96.71
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	96.67
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	96.48
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	96.44
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	96.39
2ect_A	78	Ring finger protein 126; metal binding protein, st	96.36
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	96.36
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	96.33
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	96.33
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	96.33
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	96.31
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	96.25
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.17
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	96.09
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.06
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	95.98
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	95.89
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	95.88
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.81
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	95.78
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	95.78
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	95.75
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.7
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	95.69
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	95.68
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	95.63
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	95.61
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	95.49
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	95.48
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	95.45
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	95.44
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	95.43
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	95.33
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	95.33
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	95.3
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	95.23
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	95.23
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	95.15
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	95.09
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	94.94
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	94.78
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	94.76
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	94.71
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	94.7
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	94.62
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	94.51
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	94.41
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	94.35
1z6u_A	150	NP95-like ring finger protein isoform B; structura	94.27
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	94.13
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	93.88
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	93.84
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	93.8
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	93.54
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	93.42
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	93.08
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	93.0
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	92.83
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	92.57
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	92.03
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	91.28
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	91.11
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	90.13
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	89.45
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	89.02
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	88.03
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	86.92
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	85.88
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	85.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	85.1
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	83.84

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.2e-40  Score=320.04  Aligned_cols=226  Identities=26%  Similarity=0.225  Sum_probs=179.5

Q ss_pred             CCCcHHHHHHHHcC-------------CHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 010335            8 SASGERLVSAARDG-------------DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR   74 (513)
Q Consensus         8 s~~~~~L~~Aa~~G-------------~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~   74 (513)
                      ..+.++||.|+..|             +.+++++|++.|+++.... +..|.||||+|+..|+.++|++|+++|++++.+
T Consensus         8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~   86 (253)
T 1yyh_A            8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQ   86 (253)
T ss_dssp             --------------------------------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence            45678999999987             9999999999999886542 233499999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCC
Q 010335           75 NYCGQTALMQACRYGHWEVVQTLLLFRC-NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRG  153 (513)
Q Consensus        75 d~~g~TpLh~A~~~g~~eiVk~LL~~ga-~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  153 (513)
                      |..|.||||+|+..|+.+++++|+++++ +++..+. .|.||||+|+..|+.+++++|++.+..                
T Consensus        87 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------  149 (253)
T 1yyh_A           87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD----------------  149 (253)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSHHHHHHHTTCC----------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHHHHHHHHcCCC----------------
Confidence            9999999999999999999999999988 7777764 899999999999999999999987654                


Q ss_pred             CCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335          154 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN  233 (513)
Q Consensus       154 ~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~  233 (513)
                                       ++..|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+
T Consensus       150 -----------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpL~~A~~~~~  202 (253)
T 1yyh_A          150 -----------------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGS  202 (253)
T ss_dssp             -----------------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTC
T ss_pred             -----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHCCC
Confidence                             6677888999999999999999999999999999999876          9999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          234 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       234 ~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      .+++++|+++|++++.+|..|+|||++|++.|+.+|+++|.....
T Consensus       203 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             HHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999976543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.1e-39  Score=309.50  Aligned_cols=222  Identities=28%  Similarity=0.320  Sum_probs=205.0

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      +.++|+.|++.|+++.+++|++.++..... .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhc-CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence            467899999999999999999988765333 2334599999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                                
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------------------  131 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN--------------------------------  131 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC--------------------------------
T ss_pred             HHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------------------
Confidence            99999999999999998885 899999999999999999999987653                                


Q ss_pred             hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335          170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  249 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~  249 (513)
                       ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.
T Consensus       132 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  200 (231)
T 3aji_A          132 -PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE----------GNTPLHLACDEERVEEAKFLVTQGASIYI  200 (231)
T ss_dssp             -TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             -CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCC----------CCCHHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence             5567788999999999999999999999999999999876          99999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          250 LNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       250 ~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      +|..|+|||++|+..++.+++++|.+.
T Consensus       201 ~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          201 ENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             CCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            999999999999999999999998754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.1e-39  Score=311.02  Aligned_cols=224  Identities=28%  Similarity=0.315  Sum_probs=201.8

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHh----cCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLD----CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALM   83 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~----~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh   83 (513)
                      ..+.++||.|++.|+++++++|++    .+.+++.....  |.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~   84 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL--RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH   84 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc--CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            456789999999999999999997    67777655444  499999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCC----CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhh
Q 010335           84 QACRYGHWEVVQTLLLFRC----NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK  159 (513)
Q Consensus        84 ~A~~~g~~eiVk~LL~~ga----~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (513)
                      +|+..|+.+++++|+++++    +++..+. .|.||||+|+..|+.+++++|++.+..                      
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------------  141 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQETVQLLLERGAD----------------------  141 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC----------------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccccccCc-CCCcHHHHHHHcCCHHHHHHHHHcCCC----------------------
Confidence            9999999999999999988    7777664 899999999999999999999987654                      


Q ss_pred             hhhchhHHHHhccccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHH
Q 010335          160 SKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  238 (513)
Q Consensus       160 ~~~~~~~~~~~i~~~d-~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  238 (513)
                                 ++..+ ..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.++++
T Consensus       142 -----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          142 -----------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS----------GSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             -----------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHHTCHHHHH
T ss_pred             -----------cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHH
Confidence                       44455 67999999999999999999999999999999876          999999999999999999


Q ss_pred             HHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335          239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  277 (513)
Q Consensus       239 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~  277 (513)
                      +|+++|++++.+|..|+||||+|+..|+.++++.|.+.+
T Consensus       201 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          201 TLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             HHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            999999999999999999999999999999999987754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-38  Score=309.23  Aligned_cols=231  Identities=26%  Similarity=0.266  Sum_probs=192.9

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      +.++|+.|++.|+++++++|++.|++++.... ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            46789999999999999999999998876533 33489999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.........                       ..
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-----------------------~~  139 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT-----------------------KE  139 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC-----------------------CH
T ss_pred             CHHHHHHHHHcCCCCCccCc-ccCCHHHHHHHhCCHHHHHHHHHhCCCccccccc-----------------------HH
Confidence            99999999999999998885 8999999999999999999999887653221110                       00


Q ss_pred             hcccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCccccccCCCCchhHHHhhCCC----HHHHHHHHHCC
Q 010335          170 FVNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----LKCCQVLLSRG  244 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~----~eivk~LL~~G  244 (513)
                      .....+..|.||||+|+..|+.+++++|++. |++++..+..          |.||||+|+..++    .+++++|+++|
T Consensus       140 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~----------g~t~l~~a~~~~~~~~~~~i~~~Ll~~g  209 (285)
T 1wdy_A          140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLLDHG  209 (285)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTT----------SCCHHHHHHHCSCTTTHHHHHHHHHHTT
T ss_pred             HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC----------CCCHHHHHHHccccchHHHHHHHHHHcC
Confidence            1233456777888888888888888888876 8888777765          7888888888887    78888888888


Q ss_pred             CCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335          245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  275 (513)
Q Consensus       245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~  275 (513)
                      ++++.+|..|+||||+|+..|+.+++++|.+
T Consensus       210 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            8888888888888888888888888777765

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.7e-39  Score=318.70  Aligned_cols=225  Identities=26%  Similarity=0.316  Sum_probs=202.3

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ..+.++||.|+..|+.+++++|++.|.+++..+..+  .||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~  134 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV  134 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC--CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            446689999999999999999999999887655544  899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL  167 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                      .|+.++|++|+++|++++..+  .|.||||+|+..|+.+++++|++.+..                              
T Consensus       135 ~~~~~~v~~Ll~~g~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------------  182 (285)
T 3d9h_A          135 SGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVNSLIAYGGN------------------------------  182 (285)
T ss_dssp             HTCHHHHHHHHHTTCCSSCSC--TTSCHHHHHHHHTCHHHHHHHHHTTCC------------------------------
T ss_pred             cCHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC------------------------------
Confidence            999999999999999988655  599999999999999999999987653                              


Q ss_pred             HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCC
Q 010335          168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR  247 (513)
Q Consensus       168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~  247 (513)
                         ++..|..|.||||+|+..|+.++|++|+++|++++. +..          |.||||+|+..|+.+++++|+++|+++
T Consensus       183 ---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad~  248 (285)
T 3d9h_A          183 ---IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKG----------QDSPLHAVVRTASEELACLLMDFGADT  248 (285)
T ss_dssp             ---TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBT----------TBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence               567788999999999999999999999999999985 544          999999999999999999999999999


Q ss_pred             CCcCCCCCcHHHHHHHcCccchhhhcCCCCCCCCC
Q 010335          248 MSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMP  282 (513)
Q Consensus       248 ~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~~~  282 (513)
                      +.+|.+|+||||+|+  ++.+++++|++.....++
T Consensus       249 ~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          249 QAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             TCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             CCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            999999999999999  456888888876544443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.4e-38  Score=305.10  Aligned_cols=217  Identities=30%  Similarity=0.417  Sum_probs=201.1

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ..+.++||.|++.|+.+++++|+++|.+++.....+  .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         9 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   86 (237)
T 3b7b_A            9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK   86 (237)
T ss_dssp             CCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCC--CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence            456789999999999999999999999887655544  899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335           88 YGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  166 (513)
Q Consensus        88 ~g~~eiVk~LL~~g-a~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      .|+.+++++|+++| .+++..+. .|.||||+|+..|+.+++++|++.+..                             
T Consensus        87 ~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------------------------  136 (237)
T 3b7b_A           87 KGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSD-----------------------------  136 (237)
T ss_dssp             TTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------------
T ss_pred             cCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-----------------------------
Confidence            99999999999998 77877775 899999999999999999999987653                             


Q ss_pred             HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335          167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  246 (513)
                          ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++
T Consensus       137 ----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad  202 (237)
T 3b7b_A          137 ----INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH----------GDSPLHIAARENRYDCVVLFLSRDSD  202 (237)
T ss_dssp             ----TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             ----CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence                5667788999999999999999999999999999999876          99999999999999999999999999


Q ss_pred             CCCcCCCCCcHHHHHHHcCccchh
Q 010335          247 RMSLNCNGWLPLDVARMWGRHWLE  270 (513)
Q Consensus       247 ~~~~d~~G~TpL~~A~~~g~~~iv  270 (513)
                      ++.+|.+|+||||+|+..++.+.+
T Consensus       203 ~~~~d~~g~t~l~~A~~~~~~~~~  226 (237)
T 3b7b_A          203 VTLKNKEGETPLQCASLNSQVWSA  226 (237)
T ss_dssp             TTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred             CCccCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999987543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=318.97  Aligned_cols=219  Identities=25%  Similarity=0.260  Sum_probs=173.1

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCcc------ccCCCCCCcHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCCChHHH
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAK------YSTFGGLNSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQTALM   83 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~------~~~~~~g~TpLh~Aa~~g~~-eivk~LL~~Gadvn~~d~~g~TpLh   83 (513)
                      .++|+.|++.|++++|++||+.+.....      ...+..+.||||+|+..++. .++++|++.|+++|.+|.+|.||||
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh   91 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLH   91 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            4789999999999999999998865421      12233458999999998876 5889999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhc
Q 010335           84 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD  163 (513)
Q Consensus        84 ~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (513)
                      +|+..|+.++|++|++.|++++..+. .|.||+|+|+..++.+++++|++.+..                          
T Consensus        92 ~A~~~g~~~~v~~Ll~~~a~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~--------------------------  144 (269)
T 4b93_B           92 VAALHGRADLIPLLLKHGANAGARNA-DQAVPLHLACQQGHFQVVKCLLDSNAK--------------------------  144 (269)
T ss_dssp             HHHHTTCTTHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC--------------------------
T ss_pred             HHHHcCcHHHHHHHHhcCCCcCccCC-CCCCccccccccChHHHHHHHHHCCCC--------------------------
Confidence            99999999999999999999998886 899999999999999999999987654                          


Q ss_pred             hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335          164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  243 (513)
                             ++.+|..|+||||+|+..|+.++|++|+++|+++|..+..          |.||||+|+..|+.++|++|+++
T Consensus       145 -------~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~----------g~t~Lh~A~~~g~~~~v~~Ll~~  207 (269)
T 4b93_B          145 -------PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK----------GNTALHEAVIEKHVFVVELLLLH  207 (269)
T ss_dssp             -------SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTT----------SCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             -------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccC----------CCcHHHHHHHcCCHHHHHHHHHC
Confidence                   6778889999999999999999999999999999999976          99999999999999999999999


Q ss_pred             CCCCCCcCCCCCcHHHHHHHcCc-cchhhhc
Q 010335          244 GASRMSLNCNGWLPLDVARMWGR-HWLEPLL  273 (513)
Q Consensus       244 Gad~~~~d~~G~TpL~~A~~~g~-~~iv~lL  273 (513)
                      |+|++.+|.+|+||||+|+++++ .++.++|
T Consensus       208 Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l  238 (269)
T 4b93_B          208 GASVQVLNKRQRTAVDCAEQNSKIMELLQVV  238 (269)
T ss_dssp             TCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-
T ss_pred             CCCCCCcCCCCCCHHHHHHhCCcHHHHHHHH
Confidence            99999999999999999988776 2344433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.6e-38  Score=311.94  Aligned_cols=214  Identities=25%  Similarity=0.207  Sum_probs=148.9

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCc-cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLA-KYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQAC   86 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~-~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~   86 (513)
                      ..+.++||.|++.|+.++|++|++.+.+.. ....+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~   86 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC   86 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            456789999999999999999999988732 1123334599999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCC-----------------------------------------------CcccCCCCCcHHHHH
Q 010335           87 RYGHWEVVQTLLLFRCNV-----------------------------------------------TRADYLSGRTALHFA  119 (513)
Q Consensus        87 ~~g~~eiVk~LL~~ga~~-----------------------------------------------~~~~~~~G~TpLh~A  119 (513)
                      ..|+.+++++|+++|++.                                               +..+ ..|.||||+|
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A  165 (282)
T 1oy3_D           87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVA  165 (282)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC-TTSCCHHHHH
T ss_pred             HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcC-CCCcCHHHHH
Confidence            999999999999988763                                               2233 2566666666


Q ss_pred             HHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccC-CCCcHHHHHHHcCCHHHHHHHH
Q 010335          120 AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYFDCVQLLL  198 (513)
Q Consensus       120 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~G~TpLh~Aa~~g~~eiv~~Ll  198 (513)
                      +..|+.+++++|++.+..                                 ++..+. .|+||||+|+..|+.++|++|+
T Consensus       166 ~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  212 (282)
T 1oy3_D          166 VIHKDAEMVRLLRDAGAD---------------------------------LNKPEPTCGRTPLHLAVEAQAASVLELLL  212 (282)
T ss_dssp             HHTTCHHHHHHHHHHTCC---------------------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            666666666666655432                                 333332 3666666666666666666666


Q ss_pred             HcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335          199 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  265 (513)
Q Consensus       199 ~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g  265 (513)
                      ++|++++.++..          |.||||+|+..|+.+++++|+++|++++.+|.+|+|||++|....
T Consensus       213 ~~gad~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          213 KAGADPTARMYG----------GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HTTCCTTCCCTT----------SCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             HcCCCCcccccC----------CCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            666666666654          666666666666666666666666666666666666666665543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-37  Score=305.02  Aligned_cols=226  Identities=27%  Similarity=0.279  Sum_probs=207.4

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ..+.++||.|++.|+.+++++|+++|.+++.....+  .||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        37 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  114 (285)
T 1wdy_A           37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV  114 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHH
Confidence            345689999999999999999999999887655444  899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccc---------CCCCCcHHHHHHHcCCHHHHHHHHHc-cCCCCccccchhhhcccCCCCch
Q 010335           88 YGHWEVVQTLLLFRCNVTRAD---------YLSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSS  157 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~---------~~~G~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~  157 (513)
                      .|+.+++++|+++|++++...         +..|.||||+|+..|+.+++++|++. +..                    
T Consensus       115 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--------------------  174 (285)
T 1wdy_A          115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD--------------------  174 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC--------------------
T ss_pred             hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC--------------------
Confidence            999999999999999998762         24799999999999999999999976 332                    


Q ss_pred             hhhhhchhHHHHhcccccCCCCcHHHHHHHcCC----HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335          158 VKSKCDQSALSKFVNKAADGGITALHMAALNGY----FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN  233 (513)
Q Consensus       158 ~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~----~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~  233 (513)
                                   ++..+..|.||||+|+..++    .+++++|+++|++++..+..          |.||||+|+..|+
T Consensus       175 -------------~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~  231 (285)
T 1wdy_A          175 -------------VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKH  231 (285)
T ss_dssp             -------------TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT----------SCCHHHHHHHTTC
T ss_pred             -------------CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHHcCC
Confidence                         56778889999999999999    99999999999999999876          9999999999999


Q ss_pred             HHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          234 LKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       234 ~eivk~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      .+++++|++ .|++++.+|..|+||||+|+..|+.+++++|.+.+.
T Consensus       232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999 899999999999999999999999999998876543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-37  Score=315.23  Aligned_cols=269  Identities=28%  Similarity=0.268  Sum_probs=212.7

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335           10 SGERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~-~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      +.++|+.|++.|+++.+++|+.. +.+++..+.  .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  101 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDG--RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY  101 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSST--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence            35789999999999999999976 555544433  459999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccc---hhhhcccCCCCchh-------
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM---NTQIEGDRGDGSSV-------  158 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~---~~~~~~~~~~~~~~-------  158 (513)
                      |+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.........   ..............       
T Consensus       102 g~~~iv~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~  180 (351)
T 3utm_A          102 GHYEVTELLLKHGACVNAMDL-WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH  180 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhccc
Confidence            999999999999999998885 8999999999999999999999987654322111   00000000000000       


Q ss_pred             -----hhhhchhHHHHh------cccccCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccccccCCccccccCCCCch
Q 010335          159 -----KSKCDQSALSKF------VNKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP  224 (513)
Q Consensus       159 -----~~~~~~~~~~~~------i~~~d~~G~TpLh~Aa~~---g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~Tp  224 (513)
                           ........+...      ....+..|.||||+|+..   +..+++++|+++|++++..+..          |.||
T Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~  250 (351)
T 3utm_A          181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD----------FMTP  250 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTT----------CCCH
T ss_pred             HHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCC----------CCCH
Confidence                 000000011111      123456799999999999   5589999999999999999876          9999


Q ss_pred             hHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CCCCCCCCCCCccccchh
Q 010335          225 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVMPRFHPSNYLSLPLL  295 (513)
Q Consensus       225 Lh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~~~~~~~~~~~~~~~l~  295 (513)
                      ||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.+ +....    +..+.+|+.
T Consensus       251 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~----~~~g~tal~  318 (351)
T 3utm_A          251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII----SLQGFTAAQ  318 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc----CCCCCChhh
Confidence            99999999999999999999999999999999999999999999998887754 33443    444555544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.1e-38  Score=323.03  Aligned_cols=222  Identities=19%  Similarity=0.176  Sum_probs=203.2

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      +.++||.|++.|++++|++||+.|.+++..+..+  .||||+|+..|+.++|++|+++|++++.  ..|.||||+|+..|
T Consensus        20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g   95 (364)
T 3ljn_A           20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFG--CTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMAN   95 (364)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC--CcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcC
Confidence            4689999999999999999999999887655544  8999999999999999999999996654  57999999999999


Q ss_pred             CHHHHHHHHhc----CCCCCc-----------------ccCCCCCcHHHHHHHcC--CHHHHHHHHHccCCCCccccchh
Q 010335           90 HWEVVQTLLLF----RCNVTR-----------------ADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVPFEVMNT  146 (513)
Q Consensus        90 ~~eiVk~LL~~----ga~~~~-----------------~~~~~G~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~  146 (513)
                      +.++|++|+++    |++++.                 .+. .|.||||+|+..|  +.+++++|++.+..         
T Consensus        96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~---------  165 (364)
T 3ljn_A           96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGAS---------  165 (364)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHTCC---------
T ss_pred             CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCCC---------
Confidence            99999999999    887766                 554 8999999999999  99999999987654         


Q ss_pred             hhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----cccccccCCccccccCCC
Q 010335          147 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN-----VSAVTFHYGTSMDLIGAG  221 (513)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad-----vn~~~~~~~~~~~~~~~G  221 (513)
                                              ++..|..|.||||+|+..|+.++|++|+++|++     ++..+..          |
T Consensus       166 ------------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~----------g  211 (364)
T 3ljn_A          166 ------------------------PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ----------G  211 (364)
T ss_dssp             ------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT----------C
T ss_pred             ------------------------CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC----------C
Confidence                                    667788999999999999999999999999999     8888866          9


Q ss_pred             CchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC
Q 010335          222 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  279 (513)
Q Consensus       222 ~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~  279 (513)
                      .||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus       212 ~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          212 NSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence            9999999999999999999999999999999999999999999999999999886543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-37  Score=324.55  Aligned_cols=276  Identities=27%  Similarity=0.282  Sum_probs=224.7

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ..+.++||.|++.|+.+++++|++++.+.......  |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus       111 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  188 (437)
T 1n11_A          111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH  188 (437)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC--CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            44678999999999999999999999887655444  4899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCcc---ccchhhhcccCCCCchhhhhhch
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF---EVMNTQIEGDRGDGSSVKSKCDQ  164 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  164 (513)
                      .|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+......   .......+...+....+..... 
T Consensus       189 ~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-  266 (437)
T 1n11_A          189 HNNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-  266 (437)
T ss_dssp             TTCHHHHHHHGGGTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-
T ss_pred             cCCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-
Confidence            9999999999999999988775 8999999999999999999999887643321   1112222222222221111111 


Q ss_pred             hHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335          165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       165 ~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  244 (513)
                        ....++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.++|++|+++|
T Consensus       267 --~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~g~~~~v~~Ll~~g  334 (437)
T 1n11_A          267 --KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM----------GYTPLHVASHYGNIKLVKFLLQHQ  334 (437)
T ss_dssp             --TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS----------CCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             --cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCC----------CCCHHHHHHHcCcHHHHHHHHhcC
Confidence              11224667888999999999999999999999999999998876          999999999999999999999999


Q ss_pred             CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC-CCCCCCCCCccccchhHHHHHHHHhCCC
Q 010335          245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA-VMPRFHPSNYLSLPLLSVLNVARECGLL  307 (513)
Q Consensus       245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~-~~~~~~~~~~~~~~l~~~l~~a~e~g~~  307 (513)
                      ++++.+|..|+||||+|+..|+.+++++|++.+.. +..    +..+.+|    +++|.+.|+.
T Consensus       335 ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~----~~~g~t~----l~~A~~~g~~  390 (437)
T 1n11_A          335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV----SSDGTTP----LAIAKRLGYI  390 (437)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC----CSSSCCH----HHHHHHTTCH
T ss_pred             CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCC----CCCCCCH----HHHHHHcCcH
Confidence            99999999999999999999999999888775433 322    5556666    5566666653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5e-38  Score=298.37  Aligned_cols=217  Identities=26%  Similarity=0.233  Sum_probs=196.5

Q ss_pred             CCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc
Q 010335           21 GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF  100 (513)
Q Consensus        21 G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~  100 (513)
                      |+.+++++|++.|++++.... ..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTD-RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccC-CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            788999999999998876532 3349999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCC
Q 010335          101 RC-NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI  179 (513)
Q Consensus       101 ga-~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~  179 (513)
                      ++ +++..+. .|.||||+|+..|+.+++++|++.+..                                 ++..+..|.
T Consensus        81 ~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~  126 (223)
T 2f8y_A           81 RATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD---------------------------------VNAVDDLGK  126 (223)
T ss_dssp             TTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCBCTTSC
T ss_pred             CCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHcCCC---------------------------------CcCcCCCCC
Confidence            88 6666664 899999999999999999999987653                                 566788899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Q 010335          180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD  259 (513)
Q Consensus       180 TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~  259 (513)
                      ||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|.|||+
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  196 (223)
T 2f8y_A          127 SALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD  196 (223)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHH
Confidence            9999999999999999999999999999876          999999999999999999999999999999999999999


Q ss_pred             HHHHcCccchhhhcCCCCCCCCC
Q 010335          260 VARMWGRHWLEPLLAPSSDAVMP  282 (513)
Q Consensus       260 ~A~~~g~~~iv~lL~~~~~~~~~  282 (513)
                      +|+..++.+++++|.+.+....+
T Consensus       197 ~A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          197 IAQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCSSCC
T ss_pred             HHHHhcchHHHHHHHHcCCCccc
Confidence            99999999999999887765433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-37  Score=324.62  Aligned_cols=254  Identities=28%  Similarity=0.334  Sum_probs=202.8

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ..+.++||.|++.|++++|++|+++|.+++.....+  .||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+.
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCC--CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            345689999999999999999999998887654444  899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCcc---ccchhhhcccCCCCchhhhhhch
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF---EVMNTQIEGDRGDGSSVKSKCDQ  164 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  164 (513)
                      .|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+......   .......+...+....+..... 
T Consensus        90 ~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-  167 (437)
T 1n11_A           90 IGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-  167 (437)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             CCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh-
Confidence            9999999999999999998885 8999999999999999999999887643221   1112222222222111111110 


Q ss_pred             hHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335          165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       165 ~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  244 (513)
                        ....++..+..|.||||+|+..|+.++|++|+++|++++..+..          |.||||+|+..|+.+++++|+++|
T Consensus       168 --~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g  235 (437)
T 1n11_A          168 --RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN----------GYTPLHIAAKQNQVEVARSLLQYG  235 (437)
T ss_dssp             --TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             --CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcC
Confidence              11234666778888999999888888999888888888877755          888888888888888888888888


Q ss_pred             CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335          245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  277 (513)
Q Consensus       245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~  277 (513)
                      ++++..+..|.||||+|+..|+.+++++|.+..
T Consensus       236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  268 (437)
T 1n11_A          236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ  268 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC
Confidence            888888888888888888888888887776543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=307.40  Aligned_cols=240  Identities=24%  Similarity=0.202  Sum_probs=185.4

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCC---------ccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCL---------AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCG   78 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~---------~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g   78 (513)
                      +.+.++||.|+..|+.+.+..++..++..         .....+..|.||||+|+..|+.++|++|++.|++++.+|..|
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g   92 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH   92 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            45668899999999998888877664331         122334456999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchh
Q 010335           79 QTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSV  158 (513)
Q Consensus        79 ~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (513)
                      .||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                     
T Consensus        93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------  150 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGAS---------------------  150 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC---------------------
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCHHHHHHHHHHCCCC---------------------
Confidence            9999999999999999999999999998885 899999999999999999999987653                     


Q ss_pred             hhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHH
Q 010335          159 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  238 (513)
Q Consensus       159 ~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  238 (513)
                                  ++. +..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.++|+
T Consensus       151 ------------~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~  207 (285)
T 3d9h_A          151 ------------VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH----------LGTPLYLACENQQRACVK  207 (285)
T ss_dssp             ------------SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTT----------TBCHHHHHHHTTCHHHHH
T ss_pred             ------------CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCcHHHHH
Confidence                        121 234899999999999999999999999999999876          999999999999999999


Q ss_pred             HHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC-CCCCCCCCCCccccchhHH
Q 010335          239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD-AVMPRFHPSNYLSLPLLSV  297 (513)
Q Consensus       239 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~-~~~~~~~~~~~~~~~l~~~  297 (513)
                      +|+++|++++. |..|+||||+|+..++.+++++|++.+. .+..    +..+.+|+..+
T Consensus       208 ~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~----d~~g~t~l~~A  262 (285)
T 3d9h_A          208 KLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAK----NAEGKRPVELV  262 (285)
T ss_dssp             HHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCGGGGS
T ss_pred             HHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHh
Confidence            99999999995 8999999999999999999988876543 3333    55666776543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-37  Score=296.78  Aligned_cols=217  Identities=24%  Similarity=0.269  Sum_probs=194.9

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCCC-CCCCCChHHHHHHH
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENG--ADVNS-RNYCGQTALMQACR   87 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~G--advn~-~d~~g~TpLh~A~~   87 (513)
                      .++||.|++.|+.+++++|++.+++..... +..|.||||+|+..|+.+++++|+++|  ++++. .|..|.||||+|+.
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            468999999999999999999998775532 333499999999999999999999999  66666 78999999999999


Q ss_pred             cCCHHHHHHHHhcC--CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh
Q 010335           88 YGHWEVVQTLLLFR--CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS  165 (513)
Q Consensus        88 ~g~~eiVk~LL~~g--a~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (513)
                      .|+.+++++|+++|  ++++..+. .|.||||+|+..|+.+++++|++.+..                            
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------------------  132 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGAS----------------------------  132 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC----------------------------
T ss_pred             cCCHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHcCCC----------------------------
Confidence            99999999999998  88887775 899999999999999999999987654                            


Q ss_pred             HHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH-HC
Q 010335          166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL-SR  243 (513)
Q Consensus       166 ~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL-~~  243 (513)
                           ++..+..|.||||+|+..|+.+++++|+++| ++++..+..          |.||||+|+..|+.+++++|+ ++
T Consensus       133 -----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~~  197 (228)
T 2dzn_A          133 -----VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ----------GWTPLFHALAEGHGDAAVLLVEKY  197 (228)
T ss_dssp             -----SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHhc
Confidence                 5677888999999999999999999999999 999999876          999999999999999999999 89


Q ss_pred             CCCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335          244 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  275 (513)
Q Consensus       244 Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~  275 (513)
                      |++++.+|.+|+|||++|...   +++++|.+
T Consensus       198 ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          198 GAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             CCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             CCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            999999999999999999654   45555543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1e-37  Score=321.09  Aligned_cols=232  Identities=22%  Similarity=0.221  Sum_probs=201.7

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHH--------hcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q 010335            9 ASGERLVSAARDGDFVEAKMLL--------DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQT   80 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL--------~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~T   80 (513)
                      .+.++||.|+..|+.+++++|+        +.|.+++..+..+  .||||+|+..|+.++|++|+++|++++.+|..|.|
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g--~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  201 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE--NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  201 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC--CCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence            4668999999999998888776        7788877655444  89999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcC---CCCCcccCCCCCcHHHHHHHcC---CHHHHHHHHHccCCCCccccchhhhcccCCC
Q 010335           81 ALMQACRYGHWEVVQTLLLFR---CNVTRADYLSGRTALHFAAVNG---HVRCIRLVVADFVPSVPFEVMNTQIEGDRGD  154 (513)
Q Consensus        81 pLh~A~~~g~~eiVk~LL~~g---a~~~~~~~~~G~TpLh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~  154 (513)
                      |||+|+..|+.++|++|++++   ++++..+. .|.||||+|+..+   +.+++++|++.+........           
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~-----------  269 (373)
T 2fo1_E          202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA-----------  269 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG-----------
T ss_pred             HHHHHHHCCCHHHHHHHHhcCccccChhhcCC-CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc-----------
Confidence            999999999999999999987   78887775 8999999999988   89999999987764322110           


Q ss_pred             CchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335          155 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN  233 (513)
Q Consensus       155 ~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~  233 (513)
                                    ...+..+..|.||||+|+..|+.++|++|+++| ++++..+..          |.||||+|+..|+
T Consensus       270 --------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~----------g~TpL~~A~~~g~  325 (373)
T 2fo1_E          270 --------------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----------GKTPIMLAAQEGR  325 (373)
T ss_dssp             --------------GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT----------CCCHHHHHHHHTC
T ss_pred             --------------cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC----------CCCHHHHHHHcCC
Confidence                          013456778999999999999999999999886 999999977          9999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          234 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       234 ~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      .++|++|+++|++++.+|..|+||||+|+..|+.+++++|.+...
T Consensus       326 ~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          326 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999987653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-38  Score=310.73  Aligned_cols=248  Identities=24%  Similarity=0.266  Sum_probs=201.5

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      +.++|+.|+..|++++|++|++.|++++.....+  .||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDG--LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTC--CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            4689999999999999999999999887655444  89999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      +.++|++|+++|++++..+. .|.||||+|+..++.+++++|+..................    .......  ......
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~--l~~~~~  190 (299)
T 1s70_B          118 YLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM----LRDARQW--LNSGHI  190 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH----HHHHHHH--HHHTCC
T ss_pred             CHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH----HHHHHHH--HhccCc
Confidence            99999999999999998885 8999999999999999999988653321110000000000    0000000  000000


Q ss_pred             hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335          170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  249 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~  249 (513)
                      .....+..|.||||+|+..|+.++|++|+++|++++..+..          |.||||+|+..|+.++|++|+++|++++.
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~gad~~~  260 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCDMEA  260 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence            12235567999999999999999999999999999999876          99999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          250 LNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       250 ~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      +|..|+||||+|.+.....+.+++...
T Consensus       261 ~d~~g~t~l~~A~~~~~~~l~~l~~~~  287 (299)
T 1s70_B          261 VNKVGQTAFDVADEDILGYLEELQKKQ  287 (299)
T ss_dssp             CCTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999776555555555443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.5e-37  Score=308.67  Aligned_cols=224  Identities=28%  Similarity=0.317  Sum_probs=192.5

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ..+.++||.|+..|+.+++++|+++|.+++..+..+  .||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        56 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~  133 (351)
T 3utm_A           56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG--LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS  133 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC--CcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            345789999999999999999999999987665544  899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccC-----------------------------------------------------CCCCc
Q 010335           88 YGHWEVVQTLLLFRCNVTRADY-----------------------------------------------------LSGRT  114 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~-----------------------------------------------------~~G~T  114 (513)
                      .|+.+++++|+++|++++..+.                                                     ..|.|
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t  213 (351)
T 3utm_A          134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET  213 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCC
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCC
Confidence            9999999999999999876553                                                     23455


Q ss_pred             HHHHHHHc---CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCH
Q 010335          115 ALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  191 (513)
Q Consensus       115 pLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~  191 (513)
                      |||+|+..   +..+++++|++.+..                                 ++..+..|.||||+|+.+|+.
T Consensus       214 ~L~~A~~~~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~g~~  260 (351)
T 3utm_A          214 ALHCAVASLHPKRKQVAELLLRKGAN---------------------------------VNEKNKDFMTPLHVAAERAHN  260 (351)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHhCccHHHHHHHHHHcCCC---------------------------------cCCcCCCCCCHHHHHHHcCCH
Confidence            66666655   335556666554432                                 677888999999999999999


Q ss_pred             HHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhh
Q 010335          192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  271 (513)
Q Consensus       192 eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~  271 (513)
                      ++|++|+++|++++..+..          |.||||+|+..|+.++|++|+++|++++.+|..|+||+++|    +.++++
T Consensus       261 ~~v~~Ll~~ga~~n~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~  326 (351)
T 3utm_A          261 DVMEVLHKHGAKMNALDSL----------GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQ  326 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHH
Confidence            9999999999999999977          99999999999999999999999999999999999999998    567788


Q ss_pred             hcCCCCCCC
Q 010335          272 LLAPSSDAV  280 (513)
Q Consensus       272 lL~~~~~~~  280 (513)
                      +|.+.....
T Consensus       327 ~l~~~~~~~  335 (351)
T 3utm_A          327 ILSESTPMR  335 (351)
T ss_dssp             HHHHC----
T ss_pred             HHHhccccc
Confidence            887765543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.4e-37  Score=292.71  Aligned_cols=224  Identities=25%  Similarity=0.310  Sum_probs=203.4

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRY   88 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~   88 (513)
                      +.++|+.|++.|+++++++|++.|.+++.....  |.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   86 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKE--NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ   86 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred             cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCC--CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence            456799999999999999999999888765544  4899999999999999999999999988665 4599999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      |+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                               
T Consensus        87 ~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~-------------------------------  134 (240)
T 3eu9_A           87 GHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQD-------------------------------  134 (240)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------
T ss_pred             CCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcCCC-------------------------------
Confidence            999999999999999998875 899999999999999999999987553                               


Q ss_pred             HhcccccCCCCcHHHHHHHcCC-HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCC
Q 010335          169 KFVNKAADGGITALHMAALNGY-FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR  247 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~-~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~  247 (513)
                        ++..+..|.||||+|+..++ .+++++|++.|++++..+..         .|.||||+|+..|+.+++++|+++|+++
T Consensus       135 --~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  203 (240)
T 3eu9_A          135 --VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY---------HKNTALHWAVLAGNTTVISLLLEAGANV  203 (240)
T ss_dssp             --TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT---------TCCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             --ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc---------CCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence              56678889999999997776 89999999999999998862         2899999999999999999999999999


Q ss_pred             CCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          248 MSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       248 ~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      +.+|..|+|||++|+..|+.+++++|.+...
T Consensus       204 ~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          204 DAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            9999999999999999999999999987654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-36  Score=298.16  Aligned_cols=241  Identities=23%  Similarity=0.221  Sum_probs=185.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335           43 GGLNSPLHFAAAKGHNEIVALLLENGAD---VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA  119 (513)
Q Consensus        43 ~~g~TpLh~Aa~~g~~eivk~LL~~Gad---vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A  119 (513)
                      ..|.||||+|+..|+.++|++|+++|++   ++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A   85 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER-GGHTALHLA   85 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TSCCHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHH
Confidence            4459999999999999999999999998   889999999999999999999999999999999998885 899999999


Q ss_pred             HHcCCHHHHHHHHHccCCCCccccchhhhcccC--------------CCCchhhhhhchhHHHHhcccccCCCCcHHHHH
Q 010335          120 AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDR--------------GDGSSVKSKCDQSALSKFVNKAADGGITALHMA  185 (513)
Q Consensus       120 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~A  185 (513)
                      +..|+.+++++|++.+.................              ..................++..+..|.||||+|
T Consensus        86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  165 (282)
T 1oy3_D           86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (282)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             HHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHH
Confidence            999999999999987654321111000000000              000000000000111234678889999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335          186 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  265 (513)
Q Consensus       186 a~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g  265 (513)
                      +..|+.++|++|+++|++++..+..         .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|
T Consensus       166 ~~~g~~~~v~~Ll~~g~~~~~~~~~---------~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~  236 (282)
T 1oy3_D          166 VIHKDAEMVRLLRDAGADLNKPEPT---------CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP  236 (282)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCC---------CCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence            9999999999999999999988743         2999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhcCCCCCCCCCCCCCCCccccchhH
Q 010335          266 RHWLEPLLAPSSDAVMPRFHPSNYLSLPLLS  296 (513)
Q Consensus       266 ~~~iv~lL~~~~~~~~~~~~~~~~~~~~l~~  296 (513)
                      +.+++++|.+.+....   ..+..+.+|+..
T Consensus       237 ~~~~v~~Ll~~ga~~~---~~~~~g~tpl~~  264 (282)
T 1oy3_D          237 NPILARLLRAHGAPEP---EDGGDKLSPCSS  264 (282)
T ss_dssp             CHHHHHHHHHTTCCCC---CCC---------
T ss_pred             CcHHHHHHHHcCCCcC---cCCCcccccccc
Confidence            9999988876554322   225666777554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.1e-35  Score=300.70  Aligned_cols=240  Identities=26%  Similarity=0.260  Sum_probs=170.5

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      .++|+.||+.||+++|++||++|++++..... .|.||||+|+..|+.++|++||++|++++.++..+.++++.++..++
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~-~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  104 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS  104 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence            46899999999999999999999998765433 34899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF  170 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      ..++..++..+++++..+. .|.||||+|+..|+.+++++|++.+..........                       ..
T Consensus       105 ~~~~~~~~~~~~~~~~~d~-~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~-----------------------~~  160 (337)
T 4g8k_A          105 VKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK-----------------------ED  160 (337)
T ss_dssp             HHHHHHHHTTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-------------------------
T ss_pred             chhhHHhhhccchhhhhcc-CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccc-----------------------cc
Confidence            9999999999999998886 99999999999999999999998876533211110                       01


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCcccc---------------------------ccCCCC
Q 010335          171 VNKAADGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMD---------------------------LIGAGS  222 (513)
Q Consensus       171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~~~~~~---------------------------~~~~G~  222 (513)
                      ....+..|.||||+|+.+|+.++|++|++ .|++++..+....++..                           ....|.
T Consensus       161 ~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~  240 (337)
T 4g8k_A          161 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK  240 (337)
T ss_dssp             ---CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGC
T ss_pred             cccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCC
Confidence            23344456666666666666666666663 36666655544000000                           001155


Q ss_pred             chhHHHhhCCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335          223 TPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  275 (513)
Q Consensus       223 TpLh~Aa~~g~~eivk~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~  275 (513)
                      ||||+|+..|+.++|++|++. |++++.+|.+|+||||+|+..|+.+++++|++
T Consensus       241 t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~  294 (337)
T 4g8k_A          241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK  294 (337)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT
T ss_pred             CHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            555555555555555555543 55555555555555555555555555554444

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.1e-35  Score=282.97  Aligned_cols=208  Identities=28%  Similarity=0.347  Sum_probs=187.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335           41 TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA  120 (513)
Q Consensus        41 ~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~  120 (513)
                      .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~   85 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAA   85 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT-TSCCHHHHHH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHH
Confidence            444559999999999999999999999999999999999999999999999999999999999998885 8999999999


Q ss_pred             HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335          121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL  200 (513)
Q Consensus       121 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~  200 (513)
                      ..|+.+++++|++.+..                                .++..+..|.||||+|+..|+.+++++|+++
T Consensus        86 ~~~~~~~~~~Ll~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  133 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQM--------------------------------DVNCQDDGGWTPMIWATEYKHVDLVKLLLSK  133 (237)
T ss_dssp             HTTCHHHHHHHHTTTCC--------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHhCCCC--------------------------------CcccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999976521                                1566778899999999999999999999999


Q ss_pred             CCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CC
Q 010335          201 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DA  279 (513)
Q Consensus       201 Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~  279 (513)
                      |++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|.+.+ +.
T Consensus       134 g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          134 GSDINIRDNE----------ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             TCCTTCCCTT----------SCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             CCCCCccCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence            9999998876          999999999999999999999999999999999999999999999999998877654 33


Q ss_pred             CCCCCCCCCccccchh
Q 010335          280 VMPRFHPSNYLSLPLL  295 (513)
Q Consensus       280 ~~~~~~~~~~~~~~l~  295 (513)
                      ...    +..+.+|+.
T Consensus       204 ~~~----d~~g~t~l~  215 (237)
T 3b7b_A          204 TLK----NKEGETPLQ  215 (237)
T ss_dssp             TCC----CTTSCCHHH
T ss_pred             Ccc----CCCCCCHHH
Confidence            333    556667654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-36  Score=312.14  Aligned_cols=255  Identities=21%  Similarity=0.169  Sum_probs=206.6

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHH--------HCCCCCCCCCCCCC
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL--------ENGADVNSRNYCGQ   79 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL--------~~Gadvn~~d~~g~   79 (513)
                      +.+.++||.|+..| .+++++|+..+  ++... ...|.||||+|+..|+.++|++|+        +.|+++|.+|..|.
T Consensus        92 ~~g~t~L~~Aa~~~-~~~~~~L~~~~--~n~~d-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~  167 (373)
T 2fo1_E           92 PESPIKLHTEAAGS-YAITEPITRES--VNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN  167 (373)
T ss_dssp             --CCCHHHHHHHSS-SCCCSCCSTTT--TTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC
T ss_pred             CCCccHHHHHhcCC-chHHHHhcccc--ccccC-CcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence            44578899999955 47888887643  33222 234599999999999998888776        89999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhh
Q 010335           80 TALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK  159 (513)
Q Consensus        80 TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (513)
                      ||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.                       
T Consensus       168 TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~-----------------------  223 (373)
T 2fo1_E          168 TPLMLAVLARRRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTK-----------------------  223 (373)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHH-----------------------
T ss_pred             CHHHHHHHcChHHHHHHHHHCCCCCcccCC-CCCCHHHHHHHCCCHHHHHHHHhcCc-----------------------
Confidence            999999999999999999999999998886 99999999999999999999986431                       


Q ss_pred             hhhchhHHHHhcccccCCCCcHHHHHHHcC---CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHH
Q 010335          160 SKCDQSALSKFVNKAADGGITALHMAALNG---YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC  236 (513)
Q Consensus       160 ~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g---~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ei  236 (513)
                             ....++..+..|.||||+|+..+   +.+++++|+++|++++..+.....  .....|.||||+|+..|+.++
T Consensus       224 -------~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~--~~d~~g~t~Lh~A~~~g~~~~  294 (373)
T 2fo1_E          224 -------LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD--SEKYKGRTALHYAAQVSNMPI  294 (373)
T ss_dssp             -------HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS--SSSCCCCCTHHHHHSSCCHHH
T ss_pred             -------cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC--cccccCCCHHHHHHHhCCHHH
Confidence                   11236778899999999999998   899999999999999863211000  001239999999999999999


Q ss_pred             HHHHHHCC-CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC-CCCCCCCCCccccchhHHHHHHHHhCCC
Q 010335          237 CQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA-VMPRFHPSNYLSLPLLSVLNVARECGLL  307 (513)
Q Consensus       237 vk~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~-~~~~~~~~~~~~~~l~~~l~~a~e~g~~  307 (513)
                      |++|+++| ++++.+|.+|+||||+|+..|+.+++++|++.+.. +..    +..+.+|    +++|...|..
T Consensus       295 v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~----d~~g~t~----l~~A~~~g~~  359 (373)
T 2fo1_E          295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV----DATDHTA----RQLAQANNHH  359 (373)
T ss_dssp             HHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC----CSSSCCH----HHHHHHTTCH
T ss_pred             HHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCC----CCCCCCH----HHHHHHcCCH
Confidence            99999875 99999999999999999999999999988775433 332    4555665    5666666654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-35  Score=288.97  Aligned_cols=216  Identities=25%  Similarity=0.287  Sum_probs=164.2

Q ss_pred             CCCCcHHHHHHHcC-------------CHHHHHHHHHCCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccc
Q 010335           43 GGLNSPLHFAAAKG-------------HNEIVALLLENGADVNS-RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRAD  108 (513)
Q Consensus        43 ~~g~TpLh~Aa~~g-------------~~eivk~LL~~Gadvn~-~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~  108 (513)
                      ..|.||||+|+..|             +.+++++|++.|++++. .|..|.||||+|+..|+.++|++|+++|++++..+
T Consensus         8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   87 (253)
T 1yyh_A            8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD   87 (253)
T ss_dssp             --------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            34599999999987             89999999999999865 58999999999999999999999999999999888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHc
Q 010335          109 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN  188 (513)
Q Consensus       109 ~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~  188 (513)
                      . .|.||||+|+..|+.+++++|++.+...                                ++..+..|.||||+|+..
T Consensus        88 ~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~  134 (253)
T 1yyh_A           88 N-MGRTPLHAAVSADAQGVFQILIRNRATD--------------------------------LDARMHDGTTPLILAARL  134 (253)
T ss_dssp             T-TSCCHHHHHHHHTCHHHHHHHHHSTTSC--------------------------------TTCCCTTCCCHHHHHHHH
T ss_pred             C-CCCCHHHHHHHcCCHHHHHHHHHcCCCC--------------------------------ccccCCCCCcHHHHHHHc
Confidence            5 8999999999999999999999865421                                566788899999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccc
Q 010335          189 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW  268 (513)
Q Consensus       189 g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~  268 (513)
                      |+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus       135 ~~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~  204 (253)
T 1yyh_A          135 AVEGMLEDLINSHADVNAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE  204 (253)
T ss_dssp             TCSSHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             ChHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHH
Confidence            9999999999999999999876          999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCC-CCCCCCCCCCccccchhHHHHHHHHhCCCCC
Q 010335          269 LEPLLAPSSD-AVMPRFHPSNYLSLPLLSVLNVARECGLLSS  309 (513)
Q Consensus       269 iv~lL~~~~~-~~~~~~~~~~~~~~~l~~~l~~a~e~g~~~~  309 (513)
                      ++++|++.+. .+..    +..+.+|    +++|.+.|..++
T Consensus       205 ~v~~Ll~~ga~~~~~----d~~g~tp----l~~A~~~g~~~i  238 (253)
T 1yyh_A          205 TAKVLLDHFANRDIT----DHMDRLP----RDIAQERMHHDI  238 (253)
T ss_dssp             HHHHHHHTTCCTTCC----CTTCCCH----HHHHHHTTCHHH
T ss_pred             HHHHHHHcCCCcccc----ccCCCCH----HHHHHHcCCHHH
Confidence            9988877643 3332    5556666    667777776543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.2e-35  Score=279.88  Aligned_cols=213  Identities=27%  Similarity=0.286  Sum_probs=188.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHH
Q 010335           42 FGGLNSPLHFAAAKGHNEIVALLLE----NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALH  117 (513)
Q Consensus        42 ~~~g~TpLh~Aa~~g~~eivk~LL~----~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh  117 (513)
                      +..|.||||+|+..|+.++|++|++    .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~   84 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAH   84 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHH
Confidence            3445999999999999999999997    8999999999999999999999999999999999999998885 8999999


Q ss_pred             HHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHH
Q 010335          118 FAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL  197 (513)
Q Consensus       118 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~L  197 (513)
                      +|+..|+.+++++|++.+....                             ..++..+..|.||||+|+..|+.+++++|
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~~~-----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  135 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAPGT-----------------------------LDLEARNYDGLTALHVAVNTECQETVQLL  135 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTS-----------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCcc-----------------------------ccccccCcCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999998765210                             01566778899999999999999999999


Q ss_pred             HHcCCCccccc-ccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          198 LDLHANVSAVT-FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       198 l~~Gadvn~~~-~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      +++|++++..+ ..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus       136 l~~g~~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  205 (241)
T 1k1a_A          136 LERGADIDAVDIKS----------GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS  205 (241)
T ss_dssp             HHTTCCTTCCCTTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHcCCCcccccccC----------CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999888 44          99999999999999999999999999999999999999999999999999888765


Q ss_pred             CC-CCCCCCCCCCccccchhHHH
Q 010335          277 SD-AVMPRFHPSNYLSLPLLSVL  298 (513)
Q Consensus       277 ~~-~~~~~~~~~~~~~~~l~~~l  298 (513)
                      +. .+..    +..+.+|+..+.
T Consensus       206 ga~~~~~----~~~g~tpl~~A~  224 (241)
T 1k1a_A          206 GADSSLK----NCHNDTPLMVAR  224 (241)
T ss_dssp             TCCTTCC----CTTSCCTTTTCS
T ss_pred             CCCCCCc----CCCCCCHHHHHH
Confidence            43 3322    556677765444

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.6e-36  Score=300.55  Aligned_cols=209  Identities=20%  Similarity=0.123  Sum_probs=140.1

Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q 010335           18 ARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL   97 (513)
Q Consensus        18 a~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~L   97 (513)
                      ++..+.+.++.||..+ +++..  +..|.||||+|+..|+.++|++|+++|++++..|  |.||||+|+..|+.++|++|
T Consensus         7 i~~~~~~~v~~lL~~~-~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK-DTFKA--DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GGGCCHHHHHHHHHST-TTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHH
T ss_pred             HHhcCHHHHHHHHHhC-CCCcc--CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHH
Confidence            4455555555555443 23222  2333677777777777777777777777776663  67777777777777777777


Q ss_pred             HhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCC
Q 010335           98 LLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG  177 (513)
Q Consensus        98 L~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  177 (513)
                      +++|++++..+. .|.||||+|+..|+.+++++|++.+..                                 ++..+..
T Consensus        82 l~~ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~  127 (285)
T 3kea_A           82 LFSGLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWR---------------------------------LMFYGKT  127 (285)
T ss_dssp             HHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGG---------------------------------GGGCSSS
T ss_pred             HHCCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcCCC---------------------------------CCccCCC
Confidence            777777776664 677777777777777777777765432                                 4555666


Q ss_pred             C-CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCc
Q 010335          178 G-ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL  256 (513)
Q Consensus       178 G-~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~T  256 (513)
                      | .||||+|+..|+.+++++|+++|+++...+ .          |.||||+|+..|+.++|++|+++|++++.+|..|+|
T Consensus       128 g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~----------g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t  196 (285)
T 3kea_A          128 GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-I----------LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI  196 (285)
T ss_dssp             GGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS-T----------HHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCcccccc-C----------CccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCC
Confidence            6 577777777777777777777776653321 1          667777777777777777777777777777777777


Q ss_pred             H-HHHHHHcCccchhhhcCCC
Q 010335          257 P-LDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       257 p-L~~A~~~g~~~iv~lL~~~  276 (513)
                      | ||+|+..|+.+++++|++.
T Consensus       197 ~~L~~A~~~~~~~~v~~Ll~~  217 (285)
T 3kea_A          197 PDIKLAIDNKDIEMLQALFKY  217 (285)
T ss_dssp             TTHHHHHHHTCHHHHHHHTTS
T ss_pred             hHHHHHHHcCCHHHHHHHHHc
Confidence            6 7777777777777666554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=3.2e-35  Score=280.95  Aligned_cols=204  Identities=26%  Similarity=0.277  Sum_probs=176.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCC-----CcccCCCCCcHHHH
Q 010335           45 LNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV-----TRADYLSGRTALHF  118 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~-----~~~~~~~G~TpLh~  118 (513)
                      |+||||+|+..|+.++|++|++. |++++.+|..|.||||+|+..|+.++|++|+++|+++     +..+ ..|.||||+
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~~g~t~L~~   81 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL-YEGQTALHI   81 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT-TTTCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC-CCCcCHHHH
Confidence            48999999999999999999997 9999999999999999999999999999999999886     3333 379999999


Q ss_pred             HHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHH
Q 010335          119 AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL  198 (513)
Q Consensus       119 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll  198 (513)
                      |+..|+.+++++|++.+...........                    +....+..+..|.||||+|+..|+.++|++|+
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  141 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSV--------------------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI  141 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGG--------------------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcc--------------------eeecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999988765432211100                    01114556778999999999999999999999


Q ss_pred             HcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHH----HHHHHCCCCC------CCcCCCCCcHHHHHHHcCccc
Q 010335          199 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC----QVLLSRGASR------MSLNCNGWLPLDVARMWGRHW  268 (513)
Q Consensus       199 ~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv----k~LL~~Gad~------~~~d~~G~TpL~~A~~~g~~~  268 (513)
                      ++|++++..|..          |.||||+|+..|+.+++    ++|+++|+++      +.+|..|+||||+|+..|+.+
T Consensus       142 ~~ga~~~~~d~~----------g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~  211 (232)
T 2rfa_A          142 EHGADIRAQDSL----------GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV  211 (232)
T ss_dssp             HTTCCTTCCCTT----------SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred             HCCCCCCCCCCC----------CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHH
Confidence            999999999977          99999999999999988    9999999998      588999999999999999999


Q ss_pred             hhhhcCCCCCC
Q 010335          269 LEPLLAPSSDA  279 (513)
Q Consensus       269 iv~lL~~~~~~  279 (513)
                      ++++|++++..
T Consensus       212 ~v~~Ll~~g~~  222 (232)
T 2rfa_A          212 MFQHLMQKRKH  222 (232)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhcCcc
Confidence            99999876543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.9e-35  Score=291.52  Aligned_cols=214  Identities=19%  Similarity=0.164  Sum_probs=194.4

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ..+.++||.|++.|+.+++++|++.|++++..  +  |.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~  104 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL--E--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD  104 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--T--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--C--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Confidence            45678999999999999999999999887655  2  4999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCC-CcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSG-RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  166 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G-~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      .|+.++|++|+++|++++..+. .| .||||+|+..|+.+++++|++.+...                            
T Consensus       105 ~g~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~----------------------------  155 (285)
T 3kea_A          105 SGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEIPST----------------------------  155 (285)
T ss_dssp             TTCHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHHTTCHHHHHHHHTTSCTT----------------------------
T ss_pred             cCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCcc----------------------------
Confidence            9999999999999999998886 77 89999999999999999999876421                            


Q ss_pred             HHHhcccccC-CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCch-hHHHhhCCCHHHHHHHHHCC
Q 010335          167 LSKFVNKAAD-GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       167 ~~~~i~~~d~-~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~Tp-Lh~Aa~~g~~eivk~LL~~G  244 (513)
                             .+. .|.||||+|+..|+.++|++|+++|++++..+..          |.|| ||+|+..|+.+++++|+++|
T Consensus       156 -------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~----------g~t~~L~~A~~~~~~~~v~~Ll~~g  218 (285)
T 3kea_A          156 -------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL----------LFIPDIKLAIDNKDIEMLQALFKYD  218 (285)
T ss_dssp             -------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCC----------BCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred             -------ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCC----------CCChHHHHHHHcCCHHHHHHHHHcC
Confidence                   122 7999999999999999999999999999999976          9997 99999999999999999999


Q ss_pred             CCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          245 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       245 ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      ++++.+|.       .|+..|+.+++++|++.+.
T Consensus       219 ad~~~~~~-------~a~~~~~~~iv~~Ll~~g~  245 (285)
T 3kea_A          219 INIYSANL-------ENVLLDDAEIAKMIIEKHV  245 (285)
T ss_dssp             BCSTTTTG-------GGGTTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCh-------hhhhcCCHHHHHHHHHcCC
Confidence            99999883       5677899999999887553

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.1e-34  Score=274.11  Aligned_cols=208  Identities=25%  Similarity=0.253  Sum_probs=182.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhcC--CCCCcccCCCCCcHHHHHHH
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQTALMQACRYGHWEVVQTLLLFR--CNVTRADYLSGRTALHFAAV  121 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~-~d~~g~TpLh~A~~~g~~eiVk~LL~~g--a~~~~~~~~~G~TpLh~A~~  121 (513)
                      |+||||+|+..|+.++|++|++.|.++.. .|..|.||||+|+..|+.+++++|+++|  .+++...+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            48999999999999999999999987654 8999999999999999999999999999  55555233489999999999


Q ss_pred             cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335          122 NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH  201 (513)
Q Consensus       122 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G  201 (513)
                      .|+.+++++|++.+...                               .++..+..|.||||+|+..|+.+++++|+++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~-------------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  130 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKP-------------------------------DLNKITNQGVTCLHLAVGKKWFEVSQFLIENG  130 (228)
T ss_dssp             HCCHHHHHHHHSSSSCC-------------------------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhCCCCc-------------------------------ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC
Confidence            99999999999875211                               15667888999999999999999999999999


Q ss_pred             CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHcCccchhhhcC-C-CCC
Q 010335          202 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLA-P-SSD  278 (513)
Q Consensus       202 advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~-~-~~~  278 (513)
                      ++++..+..          |.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|. + +.+
T Consensus       131 ~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~  200 (228)
T 2dzn_A          131 ASVRIKDKF----------NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE  200 (228)
T ss_dssp             CCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred             CCccccCCC----------CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            999999876          999999999999999999999999 999999999999999999999999999887 4 444


Q ss_pred             CCCCCCCCCCccccchhHH
Q 010335          279 AVMPRFHPSNYLSLPLLSV  297 (513)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~  297 (513)
                      .+..    +..+.+|+..+
T Consensus       201 ~~~~----~~~g~t~l~~A  215 (228)
T 2dzn_A          201 YDLV----DNKGAKAEDVA  215 (228)
T ss_dssp             SCCB----CTTSCBGGGGC
T ss_pred             CCcc----CCCCCcHHHHH
Confidence            4443    55666776543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.4e-33  Score=285.40  Aligned_cols=250  Identities=25%  Similarity=0.227  Sum_probs=203.9

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      +.+|||.|++.|+.++|++||++|++++.....+  .+++++++..++..++..+++.+++++..|..|.||||+|+..|
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~  136 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  136 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCC--CchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcC
Confidence            5689999999999999999999999987665544  89999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccC---------CCCCcHHHHHHHcCCHHHHHHHHHc-cCCCCccc---cchhhh---cccCC
Q 010335           90 HWEVVQTLLLFRCNVTRADY---------LSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFE---VMNTQI---EGDRG  153 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~---------~~G~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~---~~~~~~---~~~~~  153 (513)
                      +.+++++|+++|++++....         ..|.||||+|+..|+.+++++|++. +.......   ......   .....
T Consensus       137 ~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~  216 (337)
T 4g8k_A          137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS  216 (337)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT
T ss_pred             cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc
Confidence            99999999999999875432         3689999999999999999999964 44322111   111110   00000


Q ss_pred             CCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCccccccCCCCchhHHHhhCC
Q 010335          154 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  232 (513)
Q Consensus       154 ~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g  232 (513)
                      ....+...  .......++.++..|+||||+|+..|+.++|++|++. |++++..+..          |.||||+|+..|
T Consensus       217 ~~~~i~~l--Ll~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~----------G~TpL~~A~~~g  284 (337)
T 4g8k_A          217 DVEAITHL--LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD----------GKTALLLAVELK  284 (337)
T ss_dssp             THHHHHHH--HHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT----------SCBHHHHHHHTT
T ss_pred             cHHHHHHH--HHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC----------CCCHHHHHHHcC
Confidence            00000000  0111234678899999999999999999999999985 8999999977          999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          233 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       233 ~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      +.++|++||++||+++.+     +|||+|+..|+.+++++|+++++
T Consensus       285 ~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA  325 (337)
T 4g8k_A          285 LKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGA  325 (337)
T ss_dssp             CHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcC
Confidence            999999999999998754     59999999999999998877553

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.5e-34  Score=267.31  Aligned_cols=188  Identities=22%  Similarity=0.219  Sum_probs=150.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Ga-dvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      .||||+|+..|+.+++++|++.+. +++..|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~   84 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-ISDSPYLYAGAQGR   84 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCC
Confidence            688888888888888888887765 7888888888888888888888888888888888877765 78888888888888


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CC
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-AN  203 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G-ad  203 (513)
                      .+++++|++.+..                                .++..+..|.||||+|+..|+.+++++|+++| ++
T Consensus        85 ~~~~~~Ll~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  132 (201)
T 3hra_A           85 TEILAYMLKHATP--------------------------------DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED  132 (201)
T ss_dssp             HHHHHHHHHHSCC--------------------------------CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHhccCc--------------------------------ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            8888888844321                                15566677888888888888888888888888 78


Q ss_pred             cccccccCCccccccCCCCchhHHHhhCCC-----HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          204 VSAVTFHYGTSMDLIGAGSTPLHFAACGGN-----LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       204 vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~-----~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      ++..+..          |.||||+|+..++     .+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus       133 ~~~~~~~----------g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          133 IDFQNDF----------GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             TTCCCTT----------SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             cCCCCCC----------CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            8877765          8888888888877     8888888888888888888888888888888888888877654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1e-35  Score=285.54  Aligned_cols=200  Identities=24%  Similarity=0.308  Sum_probs=160.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHH
Q 010335           44 GLNSPLHFAAAKGHNEIVALLLENGA----DVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA  119 (513)
Q Consensus        44 ~g~TpLh~Aa~~g~~eivk~LL~~Ga----dvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A  119 (513)
                      .|.||||+|+..|+.+++++|++.+.    +++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|
T Consensus         7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A   85 (236)
T 1ikn_D            7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-RGNTPLHLA   85 (236)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT-TCCCHHHHH
T ss_pred             CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHH
Confidence            45888888888888888888887654    6888888888888888888888888888888888887775 788888888


Q ss_pred             HHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 010335          120 AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD  199 (513)
Q Consensus       120 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~  199 (513)
                      +..|+.+++++|++.+.....                           ...++..+..|.||||+|+..|+.++|++|++
T Consensus        86 ~~~~~~~~v~~Ll~~~~~~~~---------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  138 (236)
T 1ikn_D           86 CEQGCLASVGVLTQSCTTPHL---------------------------HSILKATNYNGHTCLHLASIHGYLGIVELLVS  138 (236)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSS---------------------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcccchhH---------------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            888888888888876543110                           11245667778888888888888888888888


Q ss_pred             cCCCcccccc-cCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          200 LHANVSAVTF-HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       200 ~Gadvn~~~~-~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      +|++++..+. .          |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|.+.+.
T Consensus       139 ~g~~~~~~~~~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          139 LGADVNAQEPCN----------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             HTCCTTCCCTTT----------CCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             cCCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            8888888775 4          8888888888888888888888888888888888888888888888888888877666


Q ss_pred             CCC
Q 010335          279 AVM  281 (513)
Q Consensus       279 ~~~  281 (513)
                      ...
T Consensus       209 ~~~  211 (236)
T 1ikn_D          209 ENL  211 (236)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.2e-35  Score=284.99  Aligned_cols=210  Identities=25%  Similarity=0.259  Sum_probs=182.6

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCC----CccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPC----LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQ   84 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~----~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~   84 (513)
                      .+.++||.|+..|+.+++++|++.+..    ++...  ..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+
T Consensus         7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   84 (236)
T 1ikn_D            7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN--NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL   84 (236)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCC--TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred             CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            456789999999999999999998763    44333  345999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCC------CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchh
Q 010335           85 ACRYGHWEVVQTLLLFRCNV------TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSV  158 (513)
Q Consensus        85 A~~~g~~eiVk~LL~~ga~~------~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (513)
                      |+..|+.+++++|+++|+++      +..+ ..|.||||+|+..|+.+++++|++.+..                     
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------  142 (236)
T 1ikn_D           85 ACEQGCLASVGVLTQSCTTPHLHSILKATN-YNGHTCLHLASIHGYLGIVELLVSLGAD---------------------  142 (236)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCC-TTCCCHHHHHHHTTCHHHHHHHHHHTCC---------------------
T ss_pred             HHHcCCHHHHHHHHhcccchhHHHHhhccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------
Confidence            99999999999999999763      3333 4799999999999999999999987654                     


Q ss_pred             hhhhchhHHHHhcccccC-CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHH
Q 010335          159 KSKCDQSALSKFVNKAAD-GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC  237 (513)
Q Consensus       159 ~~~~~~~~~~~~i~~~d~-~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv  237 (513)
                                  ++..+. .|.||||+|+..|+.++|++|+++|++++..+..          |.||||+|+..|+.+++
T Consensus       143 ------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpl~~A~~~~~~~~~  200 (236)
T 1ikn_D          143 ------------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ----------GYSPYQLTWGRPSTRIQ  200 (236)
T ss_dssp             ------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT----------CCCGGGGCTTSSCHHHH
T ss_pred             ------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCC----------CCCHHHHHHccCchHHH
Confidence                        566676 8999999999999999999999999999999976          99999999999999999


Q ss_pred             HHHHHCCCCCC--CcCCCCCcHHHHHHHc
Q 010335          238 QVLLSRGASRM--SLNCNGWLPLDVARMW  264 (513)
Q Consensus       238 k~LL~~Gad~~--~~d~~G~TpL~~A~~~  264 (513)
                      ++|+++|++..  ..+..|.||++.+...
T Consensus       201 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          201 QQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            99999999876  7788898887766543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.8e-33  Score=266.87  Aligned_cols=195  Identities=24%  Similarity=0.280  Sum_probs=180.9

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQAC   86 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Ga-dvn~~d~~g~TpLh~A~   86 (513)
                      ..+.++||.|++.|+.+++++|+++|.+++.....+  .||||+|+..|+.+++++|++++. +++..+..|.||||+|+
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMG--RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence            456789999999999999999999999887655444  899999999999999999999987 89999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335           87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  166 (513)
Q Consensus        87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      ..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                             
T Consensus       101 ~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------------------  150 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGAN-----------------------------  150 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCC-----------------------------
T ss_pred             HhCcHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------------------------
Confidence            99999999999999999998885 899999999999999999999987654                             


Q ss_pred             HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335          167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  246 (513)
                          ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..++.+++++|+++|+.
T Consensus       151 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          151 ----KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM----------DRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             ----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             ----CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccc----------CCCHHHHHHHhcchHHHHHHHHcCCC
Confidence                5677889999999999999999999999999999999876          99999999999999999999999997


Q ss_pred             CC
Q 010335          247 RM  248 (513)
Q Consensus       247 ~~  248 (513)
                      ..
T Consensus       217 ~~  218 (223)
T 2f8y_A          217 RS  218 (223)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.5e-34  Score=295.55  Aligned_cols=222  Identities=23%  Similarity=0.199  Sum_probs=184.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335           41 TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA  120 (513)
Q Consensus        41 ~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~  120 (513)
                      .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++.   .+|.||||+|+
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A~   92 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLAV   92 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHHH
Confidence            344458999999999999999999999999999999999999999999999999999999996664   36999999999


Q ss_pred             HcCCHHHHHHHHHc----cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcC--CHHHH
Q 010335          121 VNGHVRCIRLVVAD----FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG--YFDCV  194 (513)
Q Consensus       121 ~~g~~~iv~~Ll~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g--~~eiv  194 (513)
                      ..|+.+++++|++.    +........     .   ....        ......++..+..|.||||+|+..|  +.++|
T Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----~---~~~~--------~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v  156 (364)
T 3ljn_A           93 MANKTDLVVALVEGAKERGQMPESLLN-----E---CDER--------EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI  156 (364)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCHHHHHT-----C---CCCC--------CEEEETTEEEEESCCCHHHHHHHSCGGGHHHH
T ss_pred             HcCCHHHHHHHHHhccccCCCHHHHHh-----h---cchH--------hhhhhccccCCCCCCCHHHHHHHcCCchHHHH
Confidence            99999999999986    322110000     0   0000        0001124557889999999999999  99999


Q ss_pred             HHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC-----CCCcCCCCCcHHHHHHHcCccch
Q 010335          195 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS-----RMSLNCNGWLPLDVARMWGRHWL  269 (513)
Q Consensus       195 ~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad-----~~~~d~~G~TpL~~A~~~g~~~i  269 (513)
                      ++|+++|++++..+..          |.||||+|+..|+.++|++|+++|++     ++.+|..|+||||+|+..|+.++
T Consensus       157 ~~Ll~~ga~~~~~d~~----------g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  226 (364)
T 3ljn_A          157 KILVQLGASPTAKDKA----------DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV  226 (364)
T ss_dssp             HHHHHHTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHH
T ss_pred             HHHHHcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHH
Confidence            9999999999999876          99999999999999999999999999     99999999999999999999999


Q ss_pred             hhhcCCCC-CCCCCCCCCCCccccchh
Q 010335          270 EPLLAPSS-DAVMPRFHPSNYLSLPLL  295 (513)
Q Consensus       270 v~lL~~~~-~~~~~~~~~~~~~~~~l~  295 (513)
                      +++|++.+ +++..    +..+.+|++
T Consensus       227 v~~Ll~~gad~~~~----d~~g~tpL~  249 (364)
T 3ljn_A          227 AMRFVEMGIDVNME----DNEHTVPLY  249 (364)
T ss_dssp             HHHHHTTTCCTTCC----CTTSCCHHH
T ss_pred             HHHHHHcCCCCCCC----CCCCCCHHH
Confidence            98887754 33332    556667644

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3e-34  Score=284.65  Aligned_cols=243  Identities=23%  Similarity=0.245  Sum_probs=199.0

Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccc-------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335           15 VSAARDGDFVEAKMLLDCNPCLAKYS-------TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus        15 ~~Aa~~G~~e~vk~LL~~~~~~~~~~-------~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      +.+++.|..+.++.++.....+....       ....+.||||+|+..|++++|++|+++|+++|..|..|.||||+|+.
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI   82 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            35788889999999998765543211       11234799999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL  167 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                      .|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                              
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~------------------------------  131 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAH------------------------------  131 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC------------------------------
T ss_pred             cCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCC------------------------------
Confidence            9999999999999999998886 899999999999999999999987654                              


Q ss_pred             HHhcccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccC----------------CccccccCCCCchhHHHhh
Q 010335          168 SKFVNKAADGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHY----------------GTSMDLIGAGSTPLHFAAC  230 (513)
Q Consensus       168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~----------------~~~~~~~~~G~TpLh~Aa~  230 (513)
                         ++..+..|.||||+|+..++.+++++|+. .|.+++..+...                .........|.||||+|+.
T Consensus       132 ---~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~  208 (299)
T 1s70_B          132 ---VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA  208 (299)
T ss_dssp             ---TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ---CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHH
Confidence               56677889999999999999999998775 466654321100                0000011249999999999


Q ss_pred             CCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CCCCCCCCCCCccccchh
Q 010335          231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVMPRFHPSNYLSLPLL  295 (513)
Q Consensus       231 ~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~~~~~~~~~~~~~~~l~  295 (513)
                      .|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.+ +.+..    +..+.+|+.
T Consensus       209 ~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~----d~~g~t~l~  270 (299)
T 1s70_B          209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV----NKVGQTAFD  270 (299)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCTTT
T ss_pred             CCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc----CCCCCCHHH
Confidence            99999999999999999999999999999999999999998887754 33433    445555543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.4e-33  Score=261.60  Aligned_cols=191  Identities=26%  Similarity=0.269  Sum_probs=173.5

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCC-CCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~-~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      .+.++|+.|+..|+.+.+++|++.+. +++.....  |.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE--GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            45688999999999999999999887 65554443  4899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHH-hcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335           88 YGHWEVVQTLL-LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  166 (513)
Q Consensus        88 ~g~~eiVk~LL-~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      .|+.+++++|+ ..+++++..+. .|.||||+|+..|+.+++++|++.+..                             
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------------------  131 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNR-YGGNALIPAAEKGHIDNVKLLLEDGRE-----------------------------  131 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCT-TSCCSHHHHHHTTCHHHHHHHHHHCCC-----------------------------
T ss_pred             cCCHHHHHHHHhccCcccccccC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------------------------
Confidence            99999999999 55668887775 899999999999999999999987622                             


Q ss_pred             HHHhcccccCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335          167 LSKFVNKAADGGITALHMAALNGY-----FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  241 (513)
Q Consensus       167 ~~~~i~~~d~~G~TpLh~Aa~~g~-----~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL  241 (513)
                         .++..+..|.||||+|+..++     .+++++|+++|++++..+..          |.||||+|+..|+.+++++|+
T Consensus       132 ---~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll  198 (201)
T 3hra_A          132 ---DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS----------GRTAMDYANQKGYTEISKILA  198 (201)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHH
T ss_pred             ---CcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCC----------CCCHHHHHHHcCCHhHHHHHH
Confidence               167788899999999999998     99999999999999999976          999999999999999999999


Q ss_pred             HCC
Q 010335          242 SRG  244 (513)
Q Consensus       242 ~~G  244 (513)
                      ++|
T Consensus       199 ~~G  201 (201)
T 3hra_A          199 QYN  201 (201)
T ss_dssp             TCC
T ss_pred             hcC
Confidence            987

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.8e-34  Score=270.17  Aligned_cols=194  Identities=28%  Similarity=0.274  Sum_probs=180.1

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ..+.++||.|+..|+.+++++|++.|.+++.....+  .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        38 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  115 (231)
T 3aji_A           38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG--WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS  115 (231)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCC--CCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            456789999999999999999999998887655444  899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL  167 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                      .|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                              
T Consensus       116 ~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------  164 (231)
T 3aji_A          116 KNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYKAS------------------------------  164 (231)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC------------------------------
T ss_pred             cCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcCCC------------------------------
Confidence            9999999999999999998885 899999999999999999999987653                              


Q ss_pred             HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCC
Q 010335          168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR  247 (513)
Q Consensus       168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~  247 (513)
                         ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..++.+++++|+++|+++
T Consensus       165 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          165 ---TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE----------EKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             ---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             ---ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHhhHHHHHHHHHccccccC
Confidence               5677889999999999999999999999999999999876          999999999999999999999998763

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.2e-33  Score=258.10  Aligned_cols=159  Identities=38%  Similarity=0.477  Sum_probs=128.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHH
Q 010335           47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR  126 (513)
Q Consensus        47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~  126 (513)
                      ++|+.||..|+.++|++||++|+|+|.+|..|.||||+|+..++.+++++|+++|++++..+. .|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~-~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc-CCCCHHHHHHHcCCHH
Confidence            568888888888888888888888888888888888888888888888888888888887775 7888888888888888


Q ss_pred             HHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 010335          127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA  206 (513)
Q Consensus       127 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~  206 (513)
                      ++++|++.+.+                                 ++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus        85 ~v~~Ll~~gad---------------------------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~  131 (169)
T 4gpm_A           85 VVKLLISKGAD---------------------------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT  131 (169)
T ss_dssp             HHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHCcCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            88888876653                                 566777888888888888888889999999999888


Q ss_pred             ccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335          207 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  249 (513)
Q Consensus       207 ~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~  249 (513)
                      .+..          |.||||+|+..|+.+++++|+++||+++.
T Consensus       132 ~d~~----------G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          132 SDSD----------GRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CCTT----------SCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             cCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            8866          88999999999999999999999988764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.4e-34  Score=281.07  Aligned_cols=204  Identities=23%  Similarity=0.229  Sum_probs=173.7

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHHCCCCCCC----CCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCccc-----
Q 010335           45 LNSPLHFAAAKGHNE----IVALLLENGADVNS----RNYCGQTALMQACRY---GHWEVVQTLLLFRCNVTRAD-----  108 (513)
Q Consensus        45 g~TpLh~Aa~~g~~e----ivk~LL~~Gadvn~----~d~~g~TpLh~A~~~---g~~eiVk~LL~~ga~~~~~~-----  108 (513)
                      |+||||+|+..|+.+    ++++|++.|++++.    +|..|.||||+|+..   |+.++|++|+++|++++..+     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            489999999999997    66788889999998    899999999999999   99999999999998876332     


Q ss_pred             -----CCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHH
Q 010335          109 -----YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH  183 (513)
Q Consensus       109 -----~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh  183 (513)
                           +..|.||||+|+..|+.+++++|++.+...........                    +....+..+..|.||||
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~--------------------~~~~~~~~~~~g~tpL~  141 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF--------------------FQKHQGTCFYFGELPLS  141 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG--------------------GSCCSSSCCCSCSSHHH
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc--------------------ccccccccccCCCCHHH
Confidence                 13799999999999999999999998765322111100                    00012233445999999


Q ss_pred             HHHHcCCHHHHHHHHH---cCCCcccccccCCccccccCCCCchhHHHhh--CCCHH-------HHHHHHHCCCCC----
Q 010335          184 MAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAAC--GGNLK-------CCQVLLSRGASR----  247 (513)
Q Consensus       184 ~Aa~~g~~eiv~~Ll~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~--~g~~e-------ivk~LL~~Gad~----  247 (513)
                      +|+..|+.++|++|++   +|++++..+..          |.||||+|+.  .++.+       ++++|+++|+++    
T Consensus       142 ~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~  211 (256)
T 2etb_A          142 LAACTKQWDVVTYLLENPHQPASLEATDSL----------GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV  211 (256)
T ss_dssp             HHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHcCCHHHHHHHHhccccCCCcCccCCC----------CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc
Confidence            9999999999999999   99999999977          9999999999  88988       999999999999    


Q ss_pred             ---CCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          248 ---MSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       248 ---~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                         +.+|..|+||||+|+..|+.+++++|++++.
T Consensus       212 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          212 QLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence               8999999999999999999999999987653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=277.31  Aligned_cols=204  Identities=24%  Similarity=0.252  Sum_probs=157.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC--------CCCCCCCCChHHHHHHHcCCH-HHHHHHHhcCCCCCcccCCCCCcHH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGAD--------VNSRNYCGQTALMQACRYGHW-EVVQTLLLFRCNVTRADYLSGRTAL  116 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gad--------vn~~d~~g~TpLh~A~~~g~~-eiVk~LL~~ga~~~~~~~~~G~TpL  116 (513)
                      .+||+.||..|++++|++||+.|++        ++..|..|.||||+|+..++. .++++|++.|++++..+. +|+|||
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~-~G~TpL   90 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ-DGSSPL   90 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT-TSCCHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC-CCCCHH
Confidence            6999999999999999999999875        466778899999999998875 489999999999999886 999999


Q ss_pred             HHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHH
Q 010335          117 HFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL  196 (513)
Q Consensus       117 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~  196 (513)
                      |+|+..|+.+++++|++.+..                                 ++..+..|.||||+|+..++.+++++
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a~---------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~  137 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGAN---------------------------------AGARNADQAVPLHLACQQGHFQVVKC  137 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHhcCCC---------------------------------cCccCCCCCCccccccccChHHHHHH
Confidence            999999999999999987654                                 56677889999999999999999999


Q ss_pred             HHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          197 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       197 Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      |++.|++++..+..          |.||||+|+..|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|++.
T Consensus       138 Ll~~g~~~n~~d~~----------g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  207 (269)
T 4b93_B          138 LLDSNAKPNKKDLS----------GNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH  207 (269)
T ss_dssp             HHHTTCCSCCCCTT----------CCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHCCCCCCCCCCC----------CCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999876          99999999999999999999999999999999999999999999999999888765


Q ss_pred             C-CCCCCCCCCCCccccchhHH
Q 010335          277 S-DAVMPRFHPSNYLSLPLLSV  297 (513)
Q Consensus       277 ~-~~~~~~~~~~~~~~~~l~~~  297 (513)
                      + +++..    +..+.||+..+
T Consensus       208 Gad~~~~----d~~G~TpL~~A  225 (269)
T 4b93_B          208 GASVQVL----NKRQRTAVDCA  225 (269)
T ss_dssp             TCCSCCC----CTTSCCSGGGS
T ss_pred             CCCCCCc----CCCCCCHHHHH
Confidence            4 44433    56677776644

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=7.2e-34  Score=278.87  Aligned_cols=209  Identities=22%  Similarity=0.212  Sum_probs=169.6

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhc----CCCCccc--cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCC-------
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDC----NPCLAKY--STFGGLNSPLHFAAAK---GHNEIVALLLENGADV-------   71 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~----~~~~~~~--~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadv-------   71 (513)
                      ..+.++||.|++.|++++|+.|++.    +.++...  ..+..|.||||+|+..   |+.++|++|++.|+++       
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i   90 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV   90 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence            4567899999999999999999974    4444321  2344569999999987   9999999999998653       


Q ss_pred             CC----CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccC-------------CCCCcHHHHHHHcCCHHHHHHHHH-
Q 010335           72 NS----RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADY-------------LSGRTALHFAAVNGHVRCIRLVVA-  133 (513)
Q Consensus        72 n~----~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~-------------~~G~TpLh~A~~~g~~~iv~~Ll~-  133 (513)
                      +.    .|..|.||||+|+..|+.++|++|+++|++++..+.             ..|.||||+|+..|+.+++++|++ 
T Consensus        91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (273)
T 2pnn_A           91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN  170 (273)
T ss_dssp             TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred             hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            22    567899999999999999999999999999998874             269999999999999999999998 


Q ss_pred             --ccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCC---------HHHHHHHHHcCC
Q 010335          134 --DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY---------FDCVQLLLDLHA  202 (513)
Q Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~---------~eiv~~Ll~~Ga  202 (513)
                        .+..                                 ++.+|..|+||||+|+..|+         .+++++|+++|+
T Consensus       171 ~~~gad---------------------------------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga  217 (273)
T 2pnn_A          171 SWQPAD---------------------------------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA  217 (273)
T ss_dssp             SSCCCC---------------------------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCC---------------------------------ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence              5543                                 67788999999999999998         899999999999


Q ss_pred             Cccc-------ccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCC-CCCCcCCCCCcHHH
Q 010335          203 NVSA-------VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA-SRMSLNCNGWLPLD  259 (513)
Q Consensus       203 dvn~-------~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga-d~~~~d~~G~TpL~  259 (513)
                      +++.       .+..          |.||||+|+..|+.++|++|+++|| |+......+++|-+
T Consensus       218 ~~n~~~~~~~~~d~~----------g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          218 KLHPTLKLEEITNRK----------GLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHCTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             hcccccccccccCCC----------CCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9974       5654          9999999999999999999999999 88887777776643

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.5e-32  Score=250.81  Aligned_cols=161  Identities=36%  Similarity=0.518  Sum_probs=145.7

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      +++|+.|++.|++++|++||++|++++..+..+  +||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g--~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            578999999999999999999999988765544  999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF  170 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      .++|++|+++|++++..+. +|+||||+|+..|+.+++++|++.+.+                                 
T Consensus        83 ~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~gad---------------------------------  128 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGAD---------------------------------  128 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------
T ss_pred             HHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------
Confidence            9999999999999999886 999999999999999999999987754                                 


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 010335          171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV  207 (513)
Q Consensus       171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~  207 (513)
                      ++.+|..|+||||+|+.+|+.+++++|+++||+++..
T Consensus       129 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A          129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence            6778889999999999999999999999999998753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2e-33  Score=272.86  Aligned_cols=196  Identities=21%  Similarity=0.191  Sum_probs=172.0

Q ss_pred             CcHHHHHHHHcCCHH----HHHHHHhcCCCCccc--cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCC------
Q 010335           10 SGERLVSAARDGDFV----EAKMLLDCNPCLAKY--STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSR------   74 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e----~vk~LL~~~~~~~~~--~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadvn~~------   74 (513)
                      +.++||.|++.|+.+    ++++|++.|.+++..  ..+..|.||||+|+..   |+.++|++|++.|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            468999999999997    667777789888750  1233449999999999   9999999999999887643      


Q ss_pred             -----CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCC------------CCCcHHHHHHHcCCHHHHHHHHH---c
Q 010335           75 -----NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYL------------SGRTALHFAAVNGHVRCIRLVVA---D  134 (513)
Q Consensus        75 -----d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~------------~G~TpLh~A~~~g~~~iv~~Ll~---~  134 (513)
                           |..|.||||+|+..|+.++|++|+++|++++..+..            .|.||||+|+..|+.+++++|++   .
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 478999999999999999999999999999988752            29999999999999999999998   5


Q ss_pred             cCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCc-
Q 010335          135 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL--NGYFD-------CVQLLLDLHANV-  204 (513)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~--~g~~e-------iv~~Ll~~Gadv-  204 (513)
                      +..                                 ++.+|..|+||||+|+.  .++.+       ++++|+++|+++ 
T Consensus       162 ga~---------------------------------~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~  208 (256)
T 2etb_A          162 PAS---------------------------------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC  208 (256)
T ss_dssp             CCC---------------------------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCC---------------------------------cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcc
Confidence            543                                 67788999999999999  88888       999999999999 


Q ss_pred             ------ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335          205 ------SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  248 (513)
Q Consensus       205 ------n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~  248 (513)
                            +..+..          |.||||+|+..|+.+++++|+++|++..
T Consensus       209 ~~~~~~~~~d~~----------g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          209 PTVQLEEISNHQ----------GLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             TTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCC----------CCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence                  777766          9999999999999999999999987643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.2e-32  Score=259.20  Aligned_cols=211  Identities=20%  Similarity=0.137  Sum_probs=186.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      +.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++|++|+++|++++......|.||||+|+..|+
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~   88 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH   88 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred             cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence            48999999999999999999999999999999999999999999999999999999999988776679999999999999


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      .+++++|++.+..                                 ++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus        89 ~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  135 (240)
T 3eu9_A           89 LSMVVQLMKYGAD---------------------------------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV  135 (240)
T ss_dssp             HHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCC---------------------------------CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc
Confidence            9999999987653                                 5566788999999999999999999999999999


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCC-HHHHHHHHHCCCCCCCcCC-CCCcHHHHHHHcCccchhhhcCCCCC-CCC
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGN-LKCCQVLLSRGASRMSLNC-NGWLPLDVARMWGRHWLEPLLAPSSD-AVM  281 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~-~eivk~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lL~~~~~-~~~  281 (513)
                      +..+..          |.||||+|+..++ .+++++|++.|++++..+. .|+||||+|+..|+.+++++|.+.+. .+.
T Consensus       136 ~~~~~~----------g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  205 (240)
T 3eu9_A          136 DMMDQN----------GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA  205 (240)
T ss_dssp             TCCCTT----------SCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             cccCCC----------CCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            998876          9999999996665 8999999999999999987 99999999999999999988877643 222


Q ss_pred             CCCCCCCccccchhHHHHHHHHhCC
Q 010335          282 PRFHPSNYLSLPLLSVLNVARECGL  306 (513)
Q Consensus       282 ~~~~~~~~~~~~l~~~l~~a~e~g~  306 (513)
                      .    +..+.+|    +++|.+.|.
T Consensus       206 ~----~~~g~t~----l~~A~~~~~  222 (240)
T 3eu9_A          206 Q----NIKGESA----LDLAKQRKN  222 (240)
T ss_dssp             B----CTTSCBH----HHHHHHTTC
T ss_pred             c----CCCCCCH----HHHHHHcCc
Confidence            2    4455566    445555443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=3.2e-33  Score=274.23  Aligned_cols=208  Identities=20%  Similarity=0.132  Sum_probs=173.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----CCCCCC----CCCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCC------
Q 010335           43 GGLNSPLHFAAAKGHNEIVALLLE----NGADVN----SRNYCGQTALMQACRY---GHWEVVQTLLLFRCNVT------  105 (513)
Q Consensus        43 ~~g~TpLh~Aa~~g~~eivk~LL~----~Gadvn----~~d~~g~TpLh~A~~~---g~~eiVk~LL~~ga~~~------  105 (513)
                      ..|.||||+|+..|+.++|++|++    .+++++    ..|..|.||||+|+.+   |+.++|++|+++|+++.      
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i   90 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV   90 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence            345899999999999999988886    677776    4588999999999987   99999999999987532      


Q ss_pred             -c----ccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCc
Q 010335          106 -R----ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT  180 (513)
Q Consensus       106 -~----~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~T  180 (513)
                       .    .+ ..|.||||+|+..|+.+++++|++.+.............                   ....+..+..|.|
T Consensus        91 ~~~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-------------------~~~~~~~~~~g~t  150 (273)
T 2pnn_A           91 NASYTDSY-YKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK-------------------KTKGRPGFYFGEL  150 (273)
T ss_dssp             TCCCCSTT-TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS-------------------SCSSSCCCCSCBS
T ss_pred             hccccccc-CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc-------------------cccccccccCCCC
Confidence             1    22 379999999999999999999999876533221111000                   0013344558999


Q ss_pred             HHHHHHHcCCHHHHHHHHH---cCCCcccccccCCccccccCCCCchhHHHhhCCC---------HHHHHHHHHCCCCCC
Q 010335          181 ALHMAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVLLSRGASRM  248 (513)
Q Consensus       181 pLh~Aa~~g~~eiv~~Ll~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivk~LL~~Gad~~  248 (513)
                      |||+|+..|+.++|++|++   +|++++..+..          |.||||+|+..|+         .+++++|+++|++++
T Consensus       151 pL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~----------g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSV----------GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCceeeCCC----------CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999   99999999977          9999999999988         899999999999997


Q ss_pred             -------CcCCCCCcHHHHHHHcCccchhhhcCCCCCCC
Q 010335          249 -------SLNCNGWLPLDVARMWGRHWLEPLLAPSSDAV  280 (513)
Q Consensus       249 -------~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~  280 (513)
                             .+|..|+||||+|+..|+.+++++|++.+..+
T Consensus       221 ~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE  259 (273)
T ss_dssp             TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-
T ss_pred             cccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCC
Confidence                   48999999999999999999999998876643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=3.7e-33  Score=281.91  Aligned_cols=219  Identities=17%  Similarity=0.176  Sum_probs=167.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcc-ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC-
Q 010335           13 RLVSAARDGDFVEAKMLLDCNPCLAK-YSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH-   90 (513)
Q Consensus        13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~-~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~-   90 (513)
                      .++.|+..+..++++.|++.|.+++. ....+  .||||+|+..|+.++|++||++|++++.+|..|.||||+|+..|+ 
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g--~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG--NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCCSTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccccCCCC--CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccc
Confidence            45778888889999999999999887 44444  999999999999999999999999999999999999999999999 


Q ss_pred             --HHHHHHHHhcC-CCCCcccCCCCCcHHHHHHH----cCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhc
Q 010335           91 --WEVVQTLLLFR-CNVTRADYLSGRTALHFAAV----NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD  163 (513)
Q Consensus        91 --~eiVk~LL~~g-a~~~~~~~~~G~TpLh~A~~----~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (513)
                        .++++.|++++ ++++..+. .|+||||+|+.    .|+.+++++|++.+........        ..   .+.  ..
T Consensus       178 ~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~--------~~---~i~--~~  243 (327)
T 1sw6_A          178 YDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ--------NR---PIQ--SG  243 (327)
T ss_dssp             HHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG--------GC---CEE--EC
T ss_pred             ccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc--------ch---HHH--hh
Confidence              78888888886 67887775 99999999999    8999999999975421000000        00   000  00


Q ss_pred             hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335          164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  243 (513)
                      .......++..+..|.||||+|+.      +++|+++  +++..+..          |+||||+|+..|+.++|++|+++
T Consensus       244 ~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~----------G~TpLh~A~~~g~~~~v~~Ll~~  305 (327)
T 1sw6_A          244 TNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSN----------GDTCLNIAARLGNISIVDALLDY  305 (327)
T ss_dssp             ----------------CHHHHHCS------HHHHHHH--TTTCCCTT----------SCCHHHHHHHHCCHHHHHHHHHT
T ss_pred             hhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHc
Confidence            011133477788999999999985      8999998  57777766          99999999999999999999999


Q ss_pred             CCCCCCcCCCCCcHHHHHHHcC
Q 010335          244 GASRMSLNCNGWLPLDVARMWG  265 (513)
Q Consensus       244 Gad~~~~d~~G~TpL~~A~~~g  265 (513)
                      |++++.+|.+|+||||+|++.|
T Consensus       306 Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          306 GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCcccCCCCCCHHHHHHhcC
Confidence            9999999999999999998654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=7.2e-33  Score=269.42  Aligned_cols=196  Identities=21%  Similarity=0.188  Sum_probs=169.9

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHh----cCCCCccccC--CCCCCcHHHHHH---HcCCHHHHHHHHHCCCC----------
Q 010335           10 SGERLVSAARDGDFVEAKMLLD----CNPCLAKYST--FGGLNSPLHFAA---AKGHNEIVALLLENGAD----------   70 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~----~~~~~~~~~~--~~~g~TpLh~Aa---~~g~~eivk~LL~~Gad----------   70 (513)
                      +.++||.|++.|+.+.++.|++    .+.+++....  +..|.||||+|+   ..|+.++|++|++.|++          
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            4688999999999996555555    8888765442  244699999999   67999999999998754          


Q ss_pred             -CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccC-------------CCCCcHHHHHHHcCCHHHHHHHHH---
Q 010335           71 -VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADY-------------LSGRTALHFAAVNGHVRCIRLVVA---  133 (513)
Q Consensus        71 -vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~-------------~~G~TpLh~A~~~g~~~iv~~Ll~---  133 (513)
                       ++..|..|.||||+|+..|+.++|++|+++|++++..+.             ..|.||||+|+..|+.+++++|++   
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  164 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH  164 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence             455666899999999999999999999999999998873             379999999999999999999998   


Q ss_pred             ccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCc
Q 010335          134 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY---------FDCVQLLLDLHANV  204 (513)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~---------~eiv~~Ll~~Gadv  204 (513)
                      .+..                                 ++.+|..|+||||+|+..++         .+++++|+++|+++
T Consensus       165 ~ga~---------------------------------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          165 KQAD---------------------------------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             CCCC---------------------------------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC---------------------------------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            5543                                 67788999999999999888         79999999999999


Q ss_pred             -------ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCC
Q 010335          205 -------SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  248 (513)
Q Consensus       205 -------n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~  248 (513)
                             +..+..          |.||||+|+..|+.++|++|+++|++..
T Consensus       212 ~~~~~~~~~~d~~----------g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          212 FPDTNLEALLNND----------GLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             CTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccccchhhcccCC----------CCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence                   556755          9999999999999999999999987653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.8e-32  Score=266.61  Aligned_cols=204  Identities=21%  Similarity=0.151  Sum_probs=168.5

Q ss_pred             CcHHHHHHHcCCHHH----HHHHHHCCCCCCCCC----CCCChHHHHHH---HcCCHHHHHHHHhcCCCC----------
Q 010335           46 NSPLHFAAAKGHNEI----VALLLENGADVNSRN----YCGQTALMQAC---RYGHWEVVQTLLLFRCNV----------  104 (513)
Q Consensus        46 ~TpLh~Aa~~g~~ei----vk~LL~~Gadvn~~d----~~g~TpLh~A~---~~g~~eiVk~LL~~ga~~----------  104 (513)
                      +|+||.|+..|+.+.    +++|++.|++++..+    ..|.||||+|+   ..|+.++|++|++.|+++          
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~   85 (260)
T 3jxi_A            6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP   85 (260)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence            899999999999995    555555999999776    67999999999   679999999999988543          


Q ss_pred             -CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHH
Q 010335          105 -TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH  183 (513)
Q Consensus       105 -~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh  183 (513)
                       ...+ ..|+||||+|+..|+.+++++|++.+.............                   .......+..|.||||
T Consensus        86 ~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-------------------~~~~~~~~~~g~tpL~  145 (260)
T 3jxi_A           86 FRDVY-YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ-------------------PKDEGGYFYFGELPLS  145 (260)
T ss_dssp             BCCSS-EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCS-------------------SSCCCCSCCSCSSHHH
T ss_pred             ccccc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccC-------------------cccccccccCCCCHHH
Confidence             2233 279999999999999999999999876533221100000                   0011223367999999


Q ss_pred             HHHHcCCHHHHHHHHH---cCCCcccccccCCccccccCCCCchhHHHhhCCC---------HHHHHHHHHCCCCC----
Q 010335          184 MAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVLLSRGASR----  247 (513)
Q Consensus       184 ~Aa~~g~~eiv~~Ll~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivk~LL~~Gad~----  247 (513)
                      +|+..|+.++|++|++   +|++++..+..          |.||||+|+..++         .+++++|+++|+++    
T Consensus       146 ~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~  215 (260)
T 3jxi_A          146 LAACTNQPHIVHYLTENGHKQADLRRQDSR----------GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT  215 (260)
T ss_dssp             HHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHcCCHHHHHHHHhccccCCCCcccCCC----------CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc
Confidence            9999999999999999   99999999977          9999999998877         79999999999999    


Q ss_pred             ---CCcCCCCCcHHHHHHHcCccchhhhcCCCCCC
Q 010335          248 ---MSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  279 (513)
Q Consensus       248 ---~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~  279 (513)
                         +.+|.+|+||||+|+..|+.+++++|++++..
T Consensus       216 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence               67999999999999999999999998876543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=4.1e-32  Score=267.68  Aligned_cols=189  Identities=24%  Similarity=0.224  Sum_probs=174.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCC-CCCcccCCCCCcHHHHHH--
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGAD--VNSRNYCGQTALMQACRYGHWEVVQTLLLFRC-NVTRADYLSGRTALHFAA--  120 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gad--vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga-~~~~~~~~~G~TpLh~A~--  120 (513)
                      .+++|.|+..|+++.++.|++.+.+  +|.+|..|.||||+|+..|+.++|++|++.|+ +++..+. .|.||||+|+  
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR-AGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC-CCCCHHHHHHHH
Confidence            5788999999999999999988766  89999999999999999999999999999998 8887775 9999999999  


Q ss_pred             ---HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHH
Q 010335          121 ---VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL  197 (513)
Q Consensus       121 ---~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~L  197 (513)
                         ..++.+++++|++.+..                                 .+..+..|+||||+|+.+|+.++|++|
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~tpLh~A~~~g~~~~v~~L  202 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNI---------------------------------NAKASQAGQTALMLAVSHGRVDVVKAL  202 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCT---------------------------------TCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCC---------------------------------ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence               66899999999977643                                 455677899999999999999999999


Q ss_pred             HHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          198 LDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       198 l~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      +++|++++..|..          |.||||+|+..|+.++|++|++ +|++++.+|.+|+||||+|+..|+.+++++|.+.
T Consensus       203 l~~gad~n~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          203 LACEADVNVQDDD----------GSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhCCCCCCCCCCC----------CCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999977          9999999999999999999999 8999999999999999999999999999999876


Q ss_pred             CC
Q 010335          277 SD  278 (513)
Q Consensus       277 ~~  278 (513)
                      ..
T Consensus       273 ~~  274 (276)
T 4hbd_A          273 MN  274 (276)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3.1e-31  Score=241.54  Aligned_cols=168  Identities=26%  Similarity=0.261  Sum_probs=142.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGAD-VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gad-vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      .||||+|+..|+++++++|++.|.+ ++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK-ERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc-cCCCHHHHHHHCCC
Confidence            6889999999999999999988877 788888899999999999999999999999998888775 88999999999999


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      .+++++|++.+..                                 ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus        82 ~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  128 (172)
T 3v30_A           82 TDIVGLLLERDVD---------------------------------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADL  128 (172)
T ss_dssp             HHHHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            9999999876543                                 5667788999999999999999999999999999


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcH
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP  257 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~Tp  257 (513)
                      +..+..          |.||||+|+..|+.+++++|+++|+++..++..|.||
T Consensus       129 ~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          129 TTEADS----------GYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             TCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             cccCCC----------CCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            988876          9999999999999999999999999998888888876

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=4.6e-31  Score=266.55  Aligned_cols=222  Identities=14%  Similarity=0.056  Sum_probs=171.1

Q ss_pred             CCHHHHHHHHhcCCCCccccC------------CCCC---CcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCChHHHH
Q 010335           21 GDFVEAKMLLDCNPCLAKYST------------FGGL---NSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQTALMQ   84 (513)
Q Consensus        21 G~~e~vk~LL~~~~~~~~~~~------------~~~g---~TpLh~Aa~~g~~eivk~LL~~Gadvn~-~d~~g~TpLh~   84 (513)
                      |++++|++||++|.+......            .+.+   .+.+|+|+..+..+++++|++.|+++|. +|..|.||||+
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~  137 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW  137 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHH
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHH
Confidence            999999999999865432100            0011   2345888888899999999999999999 89999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC---HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhh
Q 010335           85 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH---VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK  161 (513)
Q Consensus        85 A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (513)
                      |+..|+.++|++|+++|++++..+. .|+||||+|+..|+   .++++.|++.+.                         
T Consensus       138 Aa~~g~~~~v~~Ll~~Gad~n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~-------------------------  191 (327)
T 1sw6_A          138 LTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLY-------------------------  191 (327)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHG-------------------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhcccccHHHHHHHHHhhh-------------------------
Confidence            9999999999999999999998885 99999999999998   677777775321                         


Q ss_pred             hchhHHHHhcccccCCCCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCcccccccCCccccc
Q 010335          162 CDQSALSKFVNKAADGGITALHMAAL----NGYFDCVQLLLDL--------------------HANVSAVTFHYGTSMDL  217 (513)
Q Consensus       162 ~~~~~~~~~i~~~d~~G~TpLh~Aa~----~g~~eiv~~Ll~~--------------------Gadvn~~~~~~~~~~~~  217 (513)
                             ..++..|..|+||||+|+.    .|+.+++++|++.                    |++++..+..       
T Consensus       192 -------~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~-------  257 (327)
T 1sw6_A          192 -------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE-------  257 (327)
T ss_dssp             -------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------------
T ss_pred             -------ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc-------
Confidence                   1267889999999999999    8999999999987                    8888888866       


Q ss_pred             cCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CCCCCCCCCCCccccchhH
Q 010335          218 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVMPRFHPSNYLSLPLLS  296 (513)
Q Consensus       218 ~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~~~~~~~~~~~~~~~l~~  296 (513)
                         |.||||+|+.      +++|+++  +++.+|.+|+||||+|+..|+.+++++|++.+ +++..    +..+.+|+..
T Consensus       258 ---g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~----d~~G~TpL~~  322 (327)
T 1sw6_A          258 ---RKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA----NKSGLRPVDF  322 (327)
T ss_dssp             -----CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC----CTTSCCGGGG
T ss_pred             ---CCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHH
Confidence               9999999996      9999998  68899999999999999999999998887654 33333    6677788665


Q ss_pred             H
Q 010335          297 V  297 (513)
Q Consensus       297 ~  297 (513)
                      +
T Consensus       323 A  323 (327)
T 1sw6_A          323 G  323 (327)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2.5e-30  Score=234.39  Aligned_cols=160  Identities=25%  Similarity=0.218  Sum_probs=138.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC
Q 010335           44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG  123 (513)
Q Consensus        44 ~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g  123 (513)
                      .|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcC
Confidence            458999999999999999999999999999999999999999999999999999999999888775 7888999998888


Q ss_pred             CHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 010335          124 HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN  203 (513)
Q Consensus       124 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad  203 (513)
                      +.+++++|++.+..                                 ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus        81 ~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  127 (167)
T 3v31_A           81 YTDIVKMLLDCGVD---------------------------------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD  127 (167)
T ss_dssp             CHHHHHHHHHHTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHCCCC---------------------------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88888888876543                                 566677888888888888888888888888888


Q ss_pred             cccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCC
Q 010335          204 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR  247 (513)
Q Consensus       204 vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~  247 (513)
                      ++..+..          |.||||+|+..|+.+++++|+++++++
T Consensus       128 ~~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          128 PTIETDS----------GYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             TTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            8888766          888888888888888888888876654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.9e-30  Score=232.40  Aligned_cols=156  Identities=29%  Similarity=0.355  Sum_probs=124.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV  125 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~  125 (513)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++..+. .|.||||+|+..|+.
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAGFL   83 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCH
Confidence            578888888888888888888888888888888888888887 888888888888888877764 788888888888888


Q ss_pred             HHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC-c
Q 010335          126 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN-V  204 (513)
Q Consensus       126 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad-v  204 (513)
                      +++++|++.+..                                 ++..|..|.||||+|+..|+.+++++|+++|++ +
T Consensus        84 ~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  130 (162)
T 1ihb_A           84 DTLQTLLEFQAD---------------------------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV  130 (162)
T ss_dssp             HHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT
T ss_pred             HHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC
Confidence            888888876543                                 556677788888888888888888888888887 4


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  246 (513)
                      +..+..          |.||||+|+..|+.+++++|+++|||
T Consensus       131 ~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          131 GHRNHK----------GDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             TCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCcCCC----------CCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            666655          88888888888888888888888875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=6.8e-33  Score=265.82  Aligned_cols=200  Identities=21%  Similarity=0.142  Sum_probs=169.7

Q ss_pred             HHHHHhcCCCCcccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 010335           26 AKMLLDCNPCLAKYS-TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV  104 (513)
Q Consensus        26 vk~LL~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~  104 (513)
                      |+.||+++.+..... ....+.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.++|++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            577888887776443 3334589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhccccc-CCCCcHHH
Q 010335          105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALH  183 (513)
Q Consensus       105 ~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~G~TpLh  183 (513)
                      +..+. .|.||||+|+..|+.+++++|++.+..                                 ++..+ ..|+||||
T Consensus        81 n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~~g~tpL~  126 (229)
T 2vge_A           81 NSPDS-HGWTPLHCAASCNDTVICMALVQHGAA---------------------------------IFATTLSDGATAFE  126 (229)
T ss_dssp             TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCC---------------------------------TTCCCSSTTCCTGG
T ss_pred             CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cccccCCCCCCHHH
Confidence            99886 899999999999999999999987654                                 45554 58999999


Q ss_pred             HH--HHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC--CCCcCCCCCcHHH
Q 010335          184 MA--ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS--RMSLNCNGWLPLD  259 (513)
Q Consensus       184 ~A--a~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad--~~~~d~~G~TpL~  259 (513)
                      +|  +..|+.+++++|+++|++++..+..          |.|||+.++..+..   ++|+++|++  ++.+|.+|+||||
T Consensus       127 ~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~----------~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~  193 (229)
T 2vge_A          127 KCDPYREGYADCATYLADVEQSMGLMNSG----------AVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWW  193 (229)
T ss_dssp             GCCTTSTTHHHHHHHHHHHHHHTTTSGGG----------EEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEE
T ss_pred             HHHHHhcChHHHHHHHHHcCCCcccccCC----------chHHHHHHhhcccc---ccCccccccccccccCCCcccHHH
Confidence            99  9999999999999999999999866          88999976655433   688899998  7788999999999


Q ss_pred             HHHHcCccchhhh
Q 010335          260 VARMWGRHWLEPL  272 (513)
Q Consensus       260 ~A~~~g~~~iv~l  272 (513)
                      +|+..|+.++++-
T Consensus       194 ~A~~~g~~~~v~~  206 (229)
T 2vge_A          194 WAALHGQEGYVPR  206 (229)
T ss_dssp             EEEETTEEEEEEG
T ss_pred             HHHHcCCcceeeh
Confidence            9999999998763

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=7.2e-31  Score=258.72  Aligned_cols=189  Identities=24%  Similarity=0.264  Sum_probs=170.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHH----
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQTALMQAC----   86 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Ga-dvn~~d~~g~TpLh~A~----   86 (513)
                      ++++.|+..|+++.++.+++.+.+......+..|.||||+|+..|+.++|++|++.|+ +++..|..|.||||+|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            3578899999999999999876553333344456999999999999999999999998 99999999999999999    


Q ss_pred             -HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh
Q 010335           87 -RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS  165 (513)
Q Consensus        87 -~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (513)
                       ..++.+++++|++.|..++..+. .|+||||+|+..|+.+++++|++.+.+                            
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~gad----------------------------  208 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQ-AGQTALMLAVSHGRVDVVKALLACEAD----------------------------  208 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCC----------------------------
T ss_pred             hhhhhHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCC----------------------------
Confidence             66899999999999988887775 899999999999999999999987654                            


Q ss_pred             HHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335          166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       166 ~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  244 (513)
                           ++..|..|+||||+|+..|+.++|++|++ .|++++..+..          |.||||+|+..|+.+++++|++++
T Consensus       209 -----~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~----------g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          209 -----VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD----------GSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             -----TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             -----CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCC----------CCCHHHHHHHcCCHHHHHHHHhcc
Confidence                 67788999999999999999999999999 89999999977          999999999999999999999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.2e-29  Score=230.68  Aligned_cols=156  Identities=33%  Similarity=0.443  Sum_probs=142.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      +.++|++|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~   92 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALFGH   92 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCC
Confidence            37899999999999999999999999999999999999999999999999999999999988875 89999999999999


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      .+++++|++.+..                                 ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus        93 ~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           93 LEIVEVLLKNGAD---------------------------------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV  139 (169)
T ss_dssp             HHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999987653                                 5667788999999999999999999999999999


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  244 (513)
                      +..+..          |.||||+|+..|+.+++++|+++|
T Consensus       140 ~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          140 NAQDKF----------GKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCCCTT----------SCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCcCCC----------CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            998876          999999999999999999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=6.6e-30  Score=237.20  Aligned_cols=158  Identities=25%  Similarity=0.288  Sum_probs=149.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc
Q 010335           43 GGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN  122 (513)
Q Consensus        43 ~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~  122 (513)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..
T Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~  111 (192)
T 2rfm_A           33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMWSIIF  111 (192)
T ss_dssp             TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHc
Confidence            3459999999999999999999999999999999999999999999999999999999999998886 899999999999


Q ss_pred             CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 010335          123 GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA  202 (513)
Q Consensus       123 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga  202 (513)
                      |+.+++++|++.+..                                 ++..+..|.||||+|+..|+.+++++|+++|+
T Consensus       112 ~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  158 (192)
T 2rfm_A          112 GYSEMSYFLLEHGAN---------------------------------VNDRNLEGETPLIVASKYGRSEIVKKLLELGA  158 (192)
T ss_dssp             TCHHHHHHHHHTTCC---------------------------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999987654                                 66778899999999999999999999999999


Q ss_pred             CcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335          203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       203 dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  244 (513)
                      +++..+..          |.||||+|+..|+.+++++|+++|
T Consensus       159 ~~~~~~~~----------g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          159 DISARDLT----------GLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CTTCBCTT----------SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCcCCC----------CCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999876          999999999999999999999865

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=6.3e-30  Score=237.31  Aligned_cols=162  Identities=27%  Similarity=0.311  Sum_probs=152.3

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcc
Q 010335           71 VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG  150 (513)
Q Consensus        71 vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~  150 (513)
                      +|.+|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..             
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------   93 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI-EGSTALIWAVKNNRLGIAEKLLSKGSN-------------   93 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC-------------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc-cCccHHHHHHHcCCHHHHHHHHHCCCC-------------
Confidence            467899999999999999999999999999999998875 899999999999999999999987653             


Q ss_pred             cCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhh
Q 010335          151 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC  230 (513)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~  230 (513)
                                          ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+.
T Consensus        94 --------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~  143 (192)
T 2rfm_A           94 --------------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE----------GETPLIVASK  143 (192)
T ss_dssp             --------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT----------CCCHHHHHHH
T ss_pred             --------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHH
Confidence                                5667888999999999999999999999999999999876          9999999999


Q ss_pred             CCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       231 ~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      .|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|.+.
T Consensus       144 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=4.4e-29  Score=224.61  Aligned_cols=158  Identities=32%  Similarity=0.440  Sum_probs=144.9

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      ..++|+.|++.|+++++++|++++++++.....+  .||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g--~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTS--CCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccC--ccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            5689999999999999999999998887655444  999999999 9999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+...                               
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------------------------  129 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASN-------------------------------  129 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCC-------------------------------
T ss_pred             CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHccCCC-------------------------------
Confidence            99999999999999998886 9999999999999999999999876542                               


Q ss_pred             hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 010335          170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHAN  203 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad  203 (513)
                       ++..+..|.||||+|+..|+.+++++|+++|||
T Consensus       130 -~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          130 -VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             -CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence             466788899999999999999999999999986

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.9e-29  Score=229.45  Aligned_cols=165  Identities=22%  Similarity=0.241  Sum_probs=142.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           46 NSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      .++||.|+..|+.++|++|++. +.+++..|..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAASHGH   84 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCC
Confidence            6888888888888888888887 667888888888888888888888888888888888887775 78888888888888


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      .+++++|++.+..                                 ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus        85 ~~~v~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  131 (179)
T 3f6q_A           85 RDIVQKLLQYKAD---------------------------------INAVNEHGNVPLHYACFWGQDQVAEDLVANGALV  131 (179)
T ss_dssp             HHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            8888888876543                                 5667788999999999999999999999999999


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCC
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG  254 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G  254 (513)
                      +..+..          |.||||+|+..++.+++++|+++|++++..+..+
T Consensus       132 ~~~~~~----------g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          132 SICNKY----------GEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             SBCCTT----------SCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             chhccC----------CCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            998876          9999999999999999999999999998776554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.6e-29  Score=228.76  Aligned_cols=165  Identities=25%  Similarity=0.279  Sum_probs=147.8

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      .++||.|++.|+++++++|++.++..... .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNK-PDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            45799999999999999999999874332 22344999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF  170 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      .+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                                 
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~---------------------------------  127 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARGAD---------------------------------  127 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------
T ss_pred             HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------
Confidence            9999999999999998885 899999999999999999999987654                                 


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc
Q 010335          171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH  210 (513)
Q Consensus       171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~  210 (513)
                      ++..+..|.||||+|+..|+.+++++|+++|+++...+..
T Consensus       128 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~  167 (172)
T 3v30_A          128 LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV  167 (172)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC---
T ss_pred             ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCC
Confidence            6677889999999999999999999999999998887765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2.5e-28  Score=221.99  Aligned_cols=158  Identities=36%  Similarity=0.491  Sum_probs=144.9

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      +.+.++|+.|++.|+++++++|+++|.+++..+..  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDAS--GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            34567999999999999999999999988765544  4899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL  167 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                      .|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                              
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------  138 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNGAD------------------------------  138 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------------
T ss_pred             cCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------------
Confidence            9999999999999999998885 899999999999999999999987654                              


Q ss_pred             HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335          168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLH  201 (513)
Q Consensus       168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G  201 (513)
                         ++..|..|.||||+|+.+|+.+++++|++.|
T Consensus       139 ---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          139 ---VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             ---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             ---CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence               5677888999999999999999999999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=8.2e-29  Score=224.36  Aligned_cols=158  Identities=24%  Similarity=0.378  Sum_probs=147.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCc
Q 010335           77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS  156 (513)
Q Consensus        77 ~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  156 (513)
                      .|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.+++++|++.+..                   
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------   61 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGAD-------------------   61 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC-CCCCHHHHHHHCCCHHHHHHHHHcCCC-------------------
Confidence            588999999999999999999999999998886 899999999999999999999987654                   


Q ss_pred             hhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHH
Q 010335          157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC  236 (513)
Q Consensus       157 ~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ei  236 (513)
                                    ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.++
T Consensus        62 --------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~  117 (167)
T 3v31_A           62 --------------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKC  117 (167)
T ss_dssp             --------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT----------SCCHHHHHHHTTCHHH
T ss_pred             --------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCC----------CCCHHHHHHHcCCHHH
Confidence                          5567788999999999999999999999999999999876          9999999999999999


Q ss_pred             HHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          237 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       237 vk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|.+...
T Consensus       118 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          118 VKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999876543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.6e-28  Score=218.00  Aligned_cols=149  Identities=28%  Similarity=0.378  Sum_probs=86.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHH
Q 010335           47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR  126 (513)
Q Consensus        47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~  126 (513)
                      |+||+|+..|+.++|++|+++|++++ .|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcChHH
Confidence            45555555555555555555555443 344555555555555555555555555555554443 4555555555555555


Q ss_pred             HHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 010335          127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA  206 (513)
Q Consensus       127 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~  206 (513)
                      ++++|++.+..                                 ++..|..|.||||+|+.+|+.+++++|+++|++++.
T Consensus        82 ~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  128 (153)
T 1awc_B           82 IVEVLLKHGAD---------------------------------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             HHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            55555544322                                 344455566666666666667777777777777766


Q ss_pred             ccccCCccccccCCCCchhHHHhhCCCHHHHHHH
Q 010335          207 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  240 (513)
Q Consensus       207 ~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L  240 (513)
                      .+..          |.||||+|+..|+.+++++|
T Consensus       129 ~~~~----------g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          129 QSKF----------CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCTT----------SCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCC----------CCCHHHHHHHcCCHHHHHHh
Confidence            6655          67777777777777777665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=5e-30  Score=247.05  Aligned_cols=186  Identities=20%  Similarity=0.185  Sum_probs=131.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      |.||||.|+..|+.++++.|+++|++++.. ..|.||||+|+..|+.++|++|++.|++++..+. .|.||||+|+..|+
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~g~   82 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGH   82 (239)
T ss_dssp             ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-TSCCHHHHHHHHTC
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCC
Confidence            489999999999999999999999988854 6788999999999999999999999999888875 89999999999999


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      .+++++|++.+..                                 ++..|..|+||||+|+..|+.++|++|+++|+++
T Consensus        83 ~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  129 (239)
T 1ycs_B           83 TEIVKFLVQFGVN---------------------------------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV  129 (239)
T ss_dssp             HHHHHHHHHHTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            9999999976653                                 6777888999999999999999999999999999


Q ss_pred             ccccccCCccccccCCCC-chhHHH--hhCCCHHHHHHHHHCCCCCCCc---------CCCCCcHHHHHHHcCccchhhh
Q 010335          205 SAVTFHYGTSMDLIGAGS-TPLHFA--ACGGNLKCCQVLLSRGASRMSL---------NCNGWLPLDVARMWGRHWLEPL  272 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~-TpLh~A--a~~g~~eivk~LL~~Gad~~~~---------d~~G~TpL~~A~~~g~~~iv~l  272 (513)
                      +..+..          |. ||||+|  +..|+.+++++|+++|++++..         +..+.+++++|...|.  ++++
T Consensus       130 ~~~~~~----------~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~v  197 (239)
T 1ycs_B          130 FAMTYS----------DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTI  197 (239)
T ss_dssp             TCCCSS----------SCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEE
T ss_pred             ceecCC----------CCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEE
Confidence            998866          55 999999  8889999999999999988876         5667888888877775  4455


Q ss_pred             cCCCC
Q 010335          273 LAPSS  277 (513)
Q Consensus       273 L~~~~  277 (513)
                      |....
T Consensus       198 l~~~~  202 (239)
T 1ycs_B          198 IHRED  202 (239)
T ss_dssp             CCCCT
T ss_pred             EEecC
Confidence            54433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.5e-28  Score=222.22  Aligned_cols=155  Identities=29%  Similarity=0.296  Sum_probs=107.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           46 NSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      .||||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~   87 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGH   87 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHcCc
Confidence            566666666666666666665 3445555556666666666666666666666666666665554 56666666666666


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      .+++++|++.+..                                 ++..|..|+||||+|+..|+.+++++|+++|+++
T Consensus        88 ~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  134 (165)
T 3twr_A           88 YEVAELLVKHGAV---------------------------------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP  134 (165)
T ss_dssp             HHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhCCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            6666666655432                                 4455667788888888888888888888899998


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCC
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA  245 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga  245 (513)
                      +..+..          |.||||+|+. ++.+++++|+++||
T Consensus       135 ~~~~~~----------g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          135 TKKNRD----------GNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TCCCTT----------SCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             cccCCC----------CCChhHhHhc-CChHHHHHHhhccc
Confidence            888866          8899999776 88899999998876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.4e-28  Score=218.32  Aligned_cols=152  Identities=26%  Similarity=0.285  Sum_probs=141.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCch
Q 010335           78 GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS  157 (513)
Q Consensus        78 g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  157 (513)
                      ..|+||.|+..|+.++|++|++.|++++. + ..|.||||+|+..|+.+++++|++.+..                    
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------   59 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTT-D-WLGTSPLHLAAQYGHFSTTEVLLRAGVS--------------------   59 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-C-TTCCCHHHHHHHHTCHHHHHHHHTTTCC--------------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-C-CCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------
Confidence            46899999999999999999999998763 3 4899999999999999999999976543                    


Q ss_pred             hhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHH
Q 010335          158 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC  237 (513)
Q Consensus       158 ~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv  237 (513)
                                   ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++
T Consensus        60 -------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v  116 (153)
T 1awc_B           60 -------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML----------KMTALHWATEHNHQEVV  116 (153)
T ss_dssp             -------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHTTCHHHH
T ss_pred             -------------CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHcCCHHHH
Confidence                         5667788999999999999999999999999999999876          99999999999999999


Q ss_pred             HHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcC
Q 010335          238 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  274 (513)
Q Consensus       238 k~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~  274 (513)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|.
T Consensus       117 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B          117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             HHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence            9999999999999999999999999999999999873

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=6.7e-28  Score=215.62  Aligned_cols=151  Identities=26%  Similarity=0.297  Sum_probs=82.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           46 NSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      .||||+|+..|+.+++++|++. +.+++..|..|.||||+ +..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCc
Confidence            3455555555555555555554 23555555555555555 555555555555555555554443 45555555555555


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      .+++++|++.+..                                 ++..|..|+||||+|+..|+.+++++|+++ +++
T Consensus        81 ~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~  126 (156)
T 1bd8_A           81 LDTLKVLVEHGAD---------------------------------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL  126 (156)
T ss_dssp             HHHHHHHHHTTCC---------------------------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT
T ss_pred             HHHHHHHHHcCCC---------------------------------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC
Confidence            5555555544322                                 334444555556666555666666666655 555


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  242 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~  242 (513)
                      +..+..          |.||||+|+..|+.+++++|++
T Consensus       127 ~~~~~~----------g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          127 HRRDAR----------GLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TCCCTT----------SCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CCcCCC----------CCCHHHHHHHcCcHHHHHHHHh
Confidence            555544          5666666666666666666654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=5.1e-28  Score=221.96  Aligned_cols=167  Identities=23%  Similarity=0.311  Sum_probs=149.2

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCC-CccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPC-LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQAC   86 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~-~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~   86 (513)
                      ....++|+.|++.|+++++++|++.++. ++...  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD--DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC--CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            3456779999999999999999998544 44333  34489999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335           87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  166 (513)
Q Consensus        87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      ..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                             
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----------------------------  130 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGAL-----------------------------  130 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------------
T ss_pred             HcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-----------------------------
Confidence            99999999999999999999885 999999999999999999999987654                             


Q ss_pred             HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc
Q 010335          167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH  210 (513)
Q Consensus       167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~  210 (513)
                          ++..+..|.||||+|+..++.+++++|+++|++++..+..
T Consensus       131 ----~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          131 ----VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             ----SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred             ----cchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCcc
Confidence                6778889999999999999999999999999999987754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=4.1e-28  Score=219.28  Aligned_cols=162  Identities=32%  Similarity=0.408  Sum_probs=141.5

Q ss_pred             CCCCCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335            5 FGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQ   84 (513)
Q Consensus         5 ~g~s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~   84 (513)
                      ++.+.+.++|+.|++.|+++++++|++.+... ....+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence            44555688999999999999999999865422 22334445899999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhch
Q 010335           85 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ  164 (513)
Q Consensus        85 A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (513)
                      |+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                           
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~---------------------------  133 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGAD---------------------------  133 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------
Confidence            9999999999999999999998886 899999999999999999999987654                           


Q ss_pred             hHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 010335          165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA  202 (513)
Q Consensus       165 ~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga  202 (513)
                            ++.+|..|.||||+|+. |+.+++++|+++|+
T Consensus       134 ------~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          134 ------PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             ------TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             ------CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence                  67788899999999776 99999999999886

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=6.7e-30  Score=246.15  Aligned_cols=213  Identities=20%  Similarity=0.191  Sum_probs=148.5

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .+.++|+.|++.|+.+.++.||++|.+++..   ..+.||||+|+..|+.++|++|++.|+++|.+|..|.||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC---chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4678999999999999999999999988743   3348999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      |+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.+..                               
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~-------------------------------  128 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAA-------------------------------  128 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------
T ss_pred             CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------------
Confidence            999999999999999999886 999999999999999999999988764                               


Q ss_pred             HhcccccCCCC-cHHHHH--HHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCC
Q 010335          169 KFVNKAADGGI-TALHMA--ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA  245 (513)
Q Consensus       169 ~~i~~~d~~G~-TpLh~A--a~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga  245 (513)
                        ++..+..|. ||||+|  +..|+.+++++|+++|++++..+......+ ....+.+++++|...|.  ++++|.+.+.
T Consensus       129 --~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al-~d~~~~~~~eLa~~~G~--~i~vl~~~~~  203 (239)
T 1ycs_B          129 --VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL-WDYEPQNDDELPMKEGD--CMTIIHREDE  203 (239)
T ss_dssp             --TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEES-SCBCCSSTTBCCBCSSC--EEEECCCCTT
T ss_pred             --cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEE-eccCCCCCCcccccCCC--EEEEEEecCC
Confidence              566666666 999999  888999999999999999987754311111 11348899999998886  5555555544


Q ss_pred             CC------CCcCCCCCcHHHHH
Q 010335          246 SR------MSLNCNGWLPLDVA  261 (513)
Q Consensus       246 d~------~~~d~~G~TpL~~A  261 (513)
                      +.      ...+..|++|.++.
T Consensus       204 ~~~~Ww~~~~~~~~G~~P~~yv  225 (239)
T 1ycs_B          204 DEIEWWWARLNDKEGYVPRNLL  225 (239)
T ss_dssp             SCSSEEEEEETTEEEEEEGGGE
T ss_pred             CCCCEEEEEECCcEEEeehHHe
Confidence            41      23455566666553

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=3.2e-27  Score=211.20  Aligned_cols=153  Identities=25%  Similarity=0.368  Sum_probs=138.0

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcC-CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCN-PCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~-~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      ++++|+.|++.|+++++++|++.. .+++..  +..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL--NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC--CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc--CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            368999999999999999999982 244433  3345999999 999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      |+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++. ..                               
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~-~~-------------------------------  125 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE-SD-------------------------------  125 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT-SC-------------------------------
T ss_pred             CcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc-cC-------------------------------
Confidence            999999999999999998886 899999999999999999999965 22                               


Q ss_pred             HhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335          169 KFVNKAADGGITALHMAALNGYFDCVQLLLDL  200 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~  200 (513)
                        ++..|..|.||||+|+..|+.+++++|+++
T Consensus       126 --~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          126 --LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             --TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             --CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence              667788999999999999999999999974

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.4e-30  Score=248.02  Aligned_cols=185  Identities=18%  Similarity=0.095  Sum_probs=160.5

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .+.++||.|++.|+.+++++|++.|++++..+..  |.||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+..
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~--g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~   97 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE--GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC   97 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            4457899999999999999999999988765444  49999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHH--HHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFA--AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  166 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      |+.++|++|+++|++++..++..|.||||+|  +..|+.+++++|++.+..                             
T Consensus        98 g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-----------------------------  148 (229)
T 2vge_A           98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-----------------------------  148 (229)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-----------------------------
T ss_pred             CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-----------------------------
Confidence            9999999999999999998766899999999  999999999999976532                             


Q ss_pred             HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC--cccccccCCccccccCCCCchhHHHhhCCCHHHHHHHH
Q 010335          167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN--VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  241 (513)
Q Consensus       167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad--vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL  241 (513)
                          ++..+..|.|+|+.++..+.   +++|++.|++  ++..|..          |.||||+|+..|+.++|+.++
T Consensus       149 ----~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~----------G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          149 ----MGLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGP----------EETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             ----TTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCT----------TCSSEEEEEETTEEEEEEGGG
T ss_pred             ----cccccCCchHHHHHHhhccc---cccCccccccccccccCCC----------cccHHHHHHHcCCcceeehhh
Confidence                55566777888886555443   3678889998  5566655          999999999999999987643

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1e-29  Score=261.06  Aligned_cols=213  Identities=16%  Similarity=0.041  Sum_probs=164.4

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccc-cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCChHHHHHH
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKY-STFGGLNSPLHFAAAKGHNEIVALLLENGADV---NSRNYCGQTALMQAC   86 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~-~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadv---n~~d~~g~TpLh~A~   86 (513)
                      .++||.|++.|+.++|++|++.|...... ..+..+.||||+|+..|+.++|++|+++|+|+   +..+.+ .||||+|+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            48999999999999999999998732111 11223379999999999999999999999863   333333 99999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCc--ccCCCCCcHHHHHH-HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhc
Q 010335           87 RYGHWEVVQTLLLFRCNVTR--ADYLSGRTALHFAA-VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD  163 (513)
Q Consensus        87 ~~g~~eiVk~LL~~ga~~~~--~~~~~G~TpLh~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (513)
                      ..|+.++|++|+++|++++.  .+. .|.||||+|+ .+|+.+++++|++.+.                           
T Consensus       172 ~~G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------------------------  223 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCPV---------------------------  223 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSHH---------------------------
T ss_pred             HCCCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCCC---------------------------
Confidence            99999999999999999876  554 7999999999 9999999999985421                           


Q ss_pred             hhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC----------
Q 010335          164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----------  233 (513)
Q Consensus       164 ~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~----------  233 (513)
                                   .|.||||+|+.+|+.+++++|+++|++++..+              +++++|+..|+          
T Consensus       224 -------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~--------------~~l~~A~~~g~~~vv~~~~~~  276 (376)
T 2aja_A          224 -------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH--------------DAFKLSNPDGVFDLVTKSECL  276 (376)
T ss_dssp             -------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH--------------TTTTTTSSSSCCCCSSHHHHH
T ss_pred             -------------ccchHHHHHHHCCCHHHHHHHHhcCccccccc--------------HHHHHHHHCCChhhhcHHhhh
Confidence                         16799999999999999999999999887655              24444444444          


Q ss_pred             -----------------HHHHHHHHHCCC-----CCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC
Q 010335          234 -----------------LKCCQVLLSRGA-----SRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  279 (513)
Q Consensus       234 -----------------~eivk~LL~~Ga-----d~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~  279 (513)
                                       .+.+++|++.++     +.....+.+.||||+|+..|+.+++++|++.+.+
T Consensus       277 ~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v  344 (376)
T 2aja_A          277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV  344 (376)
T ss_dssp             HHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHH
T ss_pred             hhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHH
Confidence                             345555554211     1112233567999999999999999999986543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=3.7e-26  Score=200.05  Aligned_cols=133  Identities=19%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhh
Q 010335           69 ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  148 (513)
Q Consensus        69 advn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~  148 (513)
                      ++++.+|..|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|+. |+.+++++|++.+..           
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~-----------   69 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR-FGRRPIQVMMM-GSAQVAELLLLHGAE-----------   69 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCTTTTTSTT-SCHHHHHHHHHHTCC-----------
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHc-CCHHHHHHHHHCCCC-----------
Confidence            34444444444444444444444444444444444444432 44444444444 444444444443322           


Q ss_pred             cccCCCCchhhhhhchhHHHHhcccccCC-CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHH
Q 010335          149 EGDRGDGSSVKSKCDQSALSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  227 (513)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  227 (513)
                                            ++..+.. |+||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        70 ----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~----------g~tpl~~  117 (136)
T 1d9s_A           70 ----------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW----------GRLPVDL  117 (136)
T ss_dssp             ----------------------SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSS----------SSCHHHH
T ss_pred             ----------------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHH
Confidence                                  3333444 555555556666666666666666666665544          6666666


Q ss_pred             HhhCCCHHHHHHHHHCCCC
Q 010335          228 AACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       228 Aa~~g~~eivk~LL~~Gad  246 (513)
                      |+..++.+++++|+++|||
T Consensus       118 A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          118 AEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            6666666666666666654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=3.2e-26  Score=205.34  Aligned_cols=139  Identities=26%  Similarity=0.271  Sum_probs=82.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      |.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+ .|+.++|++|+++|++++..+                
T Consensus        12 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d----------------   74 (156)
T 1bi7_B           12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD----------------   74 (156)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC----------------
T ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcC----------------
Confidence            366666666666666666666666666666666666666663 666666666666666555444                


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCC
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAALNGYFDCVQLLLDLHAN  203 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~T-pLh~Aa~~g~~eiv~~Ll~~Gad  203 (513)
                                                                         ..|.| |||+|+..|+.++|++|+++|++
T Consensus        75 ---------------------------------------------------~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~  103 (156)
T 1bi7_B           75 ---------------------------------------------------PATLTRPVHDAAREGFLDTLVVLHRAGAR  103 (156)
T ss_dssp             ---------------------------------------------------TTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             ---------------------------------------------------CCCCcHHHHHHHHCCCHHHHHHHHHcCCC
Confidence                                                               34555 66666666667777777777777


Q ss_pred             cccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335          204 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  261 (513)
Q Consensus       204 vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A  261 (513)
                      ++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|.||.+.+
T Consensus       104 ~~~~d~~----------g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          104 LDVRDAW----------GRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             SSCCCTT----------CCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CcccCCC----------CCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            7777655          77777777777777777777777777777777777776543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=3.2e-28  Score=249.92  Aligned_cols=192  Identities=15%  Similarity=-0.014  Sum_probs=152.8

Q ss_pred             HHHHHHH-cCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCChHHHHHHHc
Q 010335           13 RLVSAAR-DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV---NSRNYCGQTALMQACRY   88 (513)
Q Consensus        13 ~L~~Aa~-~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadv---n~~d~~g~TpLh~A~~~   88 (513)
                      .++.|.. .++.+.+++|+++|.+.         +||||+|+..|+.++|++|+++|+..   +..|..|.||||+|+.+
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~~---------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIKS---------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCCH---------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCc---------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            4555655 57888889998887543         69999999999999999999999832   24455688999999999


Q ss_pred             CCHHHHHHHHhcCCCC---CcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh
Q 010335           89 GHWEVVQTLLLFRCNV---TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS  165 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~---~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (513)
                      |+.++|++|+++|+++   +.... + .||||+|+..|+.+++++|++.+..                            
T Consensus       139 G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G~~eiv~~Ll~~ga~----------------------------  188 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENGHLHVLNRLCELAPT----------------------------  188 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTTCHHHHHHHHHSCGG----------------------------
T ss_pred             CCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCCCHHHHHHHHHcCCc----------------------------
Confidence            9999999999999863   22222 2 8999999999999999999987642                            


Q ss_pred             HHHHhccc--ccCCCCcHHHHHH-HcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH
Q 010335          166 ALSKFVNK--AADGGITALHMAA-LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  242 (513)
Q Consensus       166 ~~~~~i~~--~d~~G~TpLh~Aa-~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~  242 (513)
                           ++.  .|..|.||||+|+ .+|+.++|++|++.|++                 |.||||+|+..|+.+++++|++
T Consensus       189 -----~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-----------------~~taL~~Aa~~g~~evv~lL~~  246 (376)
T 2aja_A          189 -----EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-----------------LAYAEIHEFEYGEKYVNPFIAR  246 (376)
T ss_dssp             -----GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-----------------HHHHHHCTTTTTTTTHHHHHHH
T ss_pred             -----cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-----------------cchHHHHHHHCCCHHHHHHHHh
Confidence                 222  4556889999999 99999999999997742                 7799999999999999999999


Q ss_pred             CCCCCCCcCCCCCcHHHHHHHcCccch
Q 010335          243 RGASRMSLNCNGWLPLDVARMWGRHWL  269 (513)
Q Consensus       243 ~Gad~~~~d~~G~TpL~~A~~~g~~~i  269 (513)
                      +|++++.++    ++++.|+..|+.++
T Consensus       247 ~ga~~~~~~----~~l~~A~~~g~~~v  269 (376)
T 2aja_A          247 HVNRLKEMH----DAFKLSNPDGVFDL  269 (376)
T ss_dssp             HHHHHHHHH----TTTTTTSSSSCCCC
T ss_pred             cCccccccc----HHHHHHHHCCChhh
Confidence            999876654    25556666666553

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=2.6e-25  Score=194.64  Aligned_cols=133  Identities=25%  Similarity=0.258  Sum_probs=119.8

Q ss_pred             CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCC-C
Q 010335           34 PCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLS-G  112 (513)
Q Consensus        34 ~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~-G  112 (513)
                      ++++....  .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++..+. . |
T Consensus         3 ~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~-~~g   78 (136)
T 1d9s_A            3 PGIHMLGG--SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP-ATL   78 (136)
T ss_dssp             CCCSCCCC--CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT-TTT
T ss_pred             CCccCCCC--CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC-CCC
Confidence            34444333  34899999999999999999999999999999999999999999 999999999999999999886 6 9


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHH
Q 010335          113 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  192 (513)
Q Consensus       113 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~e  192 (513)
                      .||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..++.+
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpl~~A~~~~~~~  125 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGAR---------------------------------LDVCDAWGRLPVDLAEEQGHRD  125 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCC---------------------------------CCCCSSSSSCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999987654                                 6677889999999999999999


Q ss_pred             HHHHHHHcCCC
Q 010335          193 CVQLLLDLHAN  203 (513)
Q Consensus       193 iv~~Ll~~Gad  203 (513)
                      ++++|+++|+|
T Consensus       126 ~~~~Ll~~Gad  136 (136)
T 1d9s_A          126 IARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.1e-25  Score=201.74  Aligned_cols=125  Identities=24%  Similarity=0.315  Sum_probs=107.0

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh-HHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQT-ALMQAC   86 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~T-pLh~A~   86 (513)
                      ..+.++||.|++.|+++++++|+++|.+++.....+  .||||+|+ .|+.+++++|+++|++++.+|..|.| |||+|+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG--RRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSS--CCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            345789999999999999999999999887665544  89999985 99999999999999999999999999 999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccC
Q 010335           87 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV  136 (513)
Q Consensus        87 ~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~  136 (513)
                      ..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.
T Consensus        87 ~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga  135 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAG  135 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC-
T ss_pred             HCCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCC
Confidence            99999999999999999887764 67777777776666666666665443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=2.7e-26  Score=212.72  Aligned_cols=106  Identities=17%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~----eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      ++|+.|++.|+++.++.+++.+++...   +..|.||||+|+..|+.    +++++||++|+|+|.+|..|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~---~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDKE---SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCHH---HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccc---ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            346666666666666666665543211   01235666666666653    35666666666666666666666666666


Q ss_pred             cCC------HHHHHHHHhcCCCCCcccCCCCC-cHHHHHHH
Q 010335           88 YGH------WEVVQTLLLFRCNVTRADYLSGR-TALHFAAV  121 (513)
Q Consensus        88 ~g~------~eiVk~LL~~ga~~~~~~~~~G~-TpLh~A~~  121 (513)
                      .|+      .++|++|+++|++++..+. .|. ||||+|+.
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~  124 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFN  124 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGG
T ss_pred             cCCcchhhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHH
Confidence            554      3455555555555555553 454 55555543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=1.3e-25  Score=207.99  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=41.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCCH----HHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335           47 SPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRYGHW----EVVQTLLLFRCNVTRADYLSGRTALHFAAV  121 (513)
Q Consensus        47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~g~~----eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~  121 (513)
                      ++|+.|+..|+++.++.|++.+.  +.++ ..|+||||+|+.+|+.    ++|++|+++|++++..+. .|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~-~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK-EGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT-TCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHH
Confidence            44555555555555555544432  2333 3455555555555442    245555555555554442 45555555554


Q ss_pred             cCC------HHHHHHHHHccCC
Q 010335          122 NGH------VRCIRLVVADFVP  137 (513)
Q Consensus       122 ~g~------~~iv~~Ll~~~~~  137 (513)
                      .++      .+++++|++.|++
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gad  106 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGAD  106 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCC
T ss_pred             cCCcchhhHHHHHHHHHHCCCC
Confidence            443      3445555544443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=5.7e-24  Score=182.07  Aligned_cols=125  Identities=46%  Similarity=0.657  Sum_probs=99.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCh
Confidence            47888888888888888888888888888888888888888888888888888888888777765 78888888888888


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN  203 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad  203 (513)
                      .+++++|++.+..                                 ++..+..|.||||+|+..|+.+++++|+++|+|
T Consensus        81 ~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGAD---------------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCC---------------------------------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            8888888866543                                 455667788888888888888888888888875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=4.1e-24  Score=186.95  Aligned_cols=122  Identities=34%  Similarity=0.436  Sum_probs=81.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV  125 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~  125 (513)
                      .||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~   93 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIGHL   93 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcCCH
Confidence            5667777777777777777766666666666667777777777777777777766666666654 666777777777777


Q ss_pred             HHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335          126 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH  201 (513)
Q Consensus       126 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G  201 (513)
                      +++++|++.+..                                 ++..|..|.||||+|+..|+.+++++|+++|
T Consensus        94 ~~v~~Ll~~g~~---------------------------------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           94 EIAEVLLKHGAD---------------------------------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHcCCC---------------------------------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            777766655432                                 4455566667777777777777777766654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.1e-23  Score=180.22  Aligned_cols=126  Identities=44%  Similarity=0.619  Sum_probs=117.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCc
Q 010335           77 CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS  156 (513)
Q Consensus        77 ~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  156 (513)
                      +|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                   
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------   60 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAD-------------------   60 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCcHHHHHHHHHcCCC-------------------
Confidence            489999999999999999999999999998875 899999999999999999999987643                   


Q ss_pred             hhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHH
Q 010335          157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC  236 (513)
Q Consensus       157 ~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ei  236 (513)
                                    ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.++
T Consensus        61 --------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~  116 (126)
T 1n0r_A           61 --------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEV  116 (126)
T ss_dssp             --------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHH
T ss_pred             --------------CcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCcHHH
Confidence                          5667788999999999999999999999999999998876          9999999999999999


Q ss_pred             HHHHHHCCCC
Q 010335          237 CQVLLSRGAS  246 (513)
Q Consensus       237 vk~LL~~Gad  246 (513)
                      +++|+++|||
T Consensus       117 ~~~Ll~~Gad  126 (126)
T 1n0r_A          117 VKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=2.2e-23  Score=182.27  Aligned_cols=124  Identities=33%  Similarity=0.432  Sum_probs=115.0

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .+.++||.|++.|+++++++|+++|++++..+..  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEY--GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            3567999999999999999999999988765544  48999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADF  135 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~  135 (513)
                      |+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999998885 8999999999999999999998753

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=7e-24  Score=185.50  Aligned_cols=134  Identities=29%  Similarity=0.301  Sum_probs=85.7

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhh
Q 010335           68 GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  147 (513)
Q Consensus        68 Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  147 (513)
                      |+|+ .+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..          
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------   68 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPLHEACNHGHLKVVELLLQHKAL----------   68 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCc----------
Confidence            3444 4555555666666655565666655555555555543 555666666666666666666554332          


Q ss_pred             hcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHH
Q 010335          148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  227 (513)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  227 (513)
                                             ++..|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        69 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpl~~  115 (137)
T 3c5r_A           69 -----------------------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF----------GLRPVDY  115 (137)
T ss_dssp             -----------------------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCGGGG
T ss_pred             -----------------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHH
Confidence                                   3445556778888888888888888888888888888866          8899999


Q ss_pred             HhhCCCHHHHHHHHHCCCC
Q 010335          228 AACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       228 Aa~~g~~eivk~LL~~Gad  246 (513)
                      |+..+..+++++|.+.+..
T Consensus       116 A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A          116 TDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CCCHHHHHHHSCC------
T ss_pred             HhhccHHHHHhhccccccC
Confidence            9888888888887766543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=8.8e-24  Score=184.88  Aligned_cols=133  Identities=29%  Similarity=0.368  Sum_probs=116.1

Q ss_pred             CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCc
Q 010335          101 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT  180 (513)
Q Consensus       101 ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~T  180 (513)
                      |+++ ..+ ..|.||||+|+..|+.+++++|++.+..                                 ++..|..|.|
T Consensus         1 G~d~-~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t   45 (137)
T 3c5r_A            1 GIDP-FTN-HRGETLLHIASIKGDIPSVEYLLQNGSD---------------------------------PNVKDHAGWT   45 (137)
T ss_dssp             ---C-CCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------SCCCCTTSCC
T ss_pred             CCCC-CcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCcCCCCCCC
Confidence            4566 334 4899999999999999999999987653                                 5677888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Q 010335          181 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV  260 (513)
Q Consensus       181 pLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~  260 (513)
                      |||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+|||++
T Consensus        46 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  115 (137)
T 3c5r_A           46 PLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY  115 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCGG----------GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCcccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            999999999999999999999999999977          9999999999999999999999999999999999999999


Q ss_pred             HHHcCccchhhhcCCCCC
Q 010335          261 ARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       261 A~~~g~~~iv~lL~~~~~  278 (513)
                      |+..+..+++++|.+...
T Consensus       116 A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A          116 TDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CCCHHHHHHHSCC-----
T ss_pred             HhhccHHHHHhhcccccc
Confidence            999999999998877553

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=3.8e-23  Score=206.13  Aligned_cols=139  Identities=22%  Similarity=0.233  Sum_probs=122.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCcccCCCCCcHH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGADVNS------RNYCGQTALMQACRY---GHWEVVQTLLLFRCNVTRADYLSGRTAL  116 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~------~d~~g~TpLh~A~~~---g~~eiVk~LL~~ga~~~~~~~~~G~TpL  116 (513)
                      .++|+.|+..|+++.|++|++.|++++.      .|..|.||||+|+..   |+.++|++|+++|++++..+. .|.|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~-~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT-TCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC-CCCCHH
Confidence            4679999999999999999999999998      689999999999997   899999999999999999885 999999


Q ss_pred             HHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHH
Q 010335          117 HFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL  196 (513)
Q Consensus       117 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~  196 (513)
                      |+|+..|+.+++++|++.+++                                 ++..|..|.||||+|+..|+.+++++
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad---------------------------------~~~~d~~G~TpL~~A~~~~~~~iv~~  277 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRAL---------------------------------VGTVNEAGETALDIARKKHHKECEEL  277 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC---------------------------------CSCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999987764                                 67788899999999999999999999


Q ss_pred             HHHcCCCcccccccCCccccccCCCCchhHHHhhCCCH
Q 010335          197 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL  234 (513)
Q Consensus       197 Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~  234 (513)
                      |+++|++      .          |.||||+|+..|+.
T Consensus       278 Ll~~ga~------~----------g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          278 LEQAQAG------T----------FAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHH------T----------TSSCCC--------
T ss_pred             HHHhcCC------C----------CCChhHHHHhcCCc
Confidence            9999876      1          88999999998864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1.2e-23  Score=203.11  Aligned_cols=141  Identities=26%  Similarity=0.248  Sum_probs=126.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      |.||||+|+..|+.++|++|++ |+++|.+|..|.||||+|+..|+.++|++|+++|++++..++..|.||||+|+..|+
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~  123 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR  123 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            4899999999999999999999 999999999999999999999999999999999999998886689999999999999


Q ss_pred             HHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 010335          125 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  204 (513)
Q Consensus       125 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadv  204 (513)
                      .+++++|++.+..                                 ++..|..|.||||+|+..++.             
T Consensus       124 ~~~v~~Ll~~ga~---------------------------------~~~~d~~g~t~l~~A~~~~~~-------------  157 (244)
T 3ui2_A          124 PEVVEALVELGAD---------------------------------IEVEDERGLTALELAREILKT-------------  157 (244)
T ss_dssp             HHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHHHTT-------------
T ss_pred             HHHHHHHHHCCCC---------------------------------CCCCCCCCCcHHHHHHHHHhc-------------
Confidence            9999999987654                                 677888999999999863221             


Q ss_pred             ccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335          205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       205 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  246 (513)
                          .          .+.||||+|+..|+.+++++|++++.+
T Consensus       158 ----~----------~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          158 ----T----------PKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             ----C----------CCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             ----c----------CCCCHHHHHHHcChHHHHHHHHHhccc
Confidence                1          288999999999999999999987654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=2.6e-23  Score=191.46  Aligned_cols=166  Identities=23%  Similarity=0.229  Sum_probs=131.8

Q ss_pred             HHHcCCHHHHHHHHhcCCCCccc---------cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335           17 AARDGDFVEAKMLLDCNPCLAKY---------STFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus        17 Aa~~G~~e~vk~LL~~~~~~~~~---------~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      |++.|..+.+++|++.+......         ..+..|.||||+|+..|+.+++++|++ |+++|.+|..|.||||+|+.
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~   85 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAG   85 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHH
Confidence            44555666666666443221110         011234899999999999999999999 99999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL  167 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                      .|+.++|++|+++|++++..++..|+||||+|+..|+.+++++|++.+..                              
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------------------------  135 (183)
T 3deo_A           86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD------------------------------  135 (183)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC------------------------------
T ss_pred             cCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC------------------------------
Confidence            99999999999999999888855899999999999999999999977654                              


Q ss_pred             HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335          168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  243 (513)
                         ++.+|..|.||||+|+..++.                 .          .+.+||++|+..|+.+++++|.++
T Consensus       136 ---~~~~d~~g~tpl~~A~~~~~~-----------------~----------~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          136 ---IEVEDERGLTALELAREILKT-----------------T----------PKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ---TTCCCTTSCCHHHHHHHHHHT-----------------C----------CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---CcCCCCCCCCHHHHHHHhccC-----------------c----------ccccHHHHHHHcCHHHHHHHHHHh
Confidence               667788899999999874322                 1          267899999999999999998765

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=3e-23  Score=196.84  Aligned_cols=137  Identities=26%  Similarity=0.281  Sum_probs=93.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc-cCCCCccccchhhhcccCC
Q 010335           75 NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRG  153 (513)
Q Consensus        75 d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~  153 (513)
                      +..|.||||+|+..|+.++|++|++.|++++..+. .|.||||+|+..|+.+++++|++. +..                
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----------------  132 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHKDIVEMLFTQPNIE----------------  132 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHTTSTTCC----------------
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHcCCCCC----------------
Confidence            44567777777777777777777777777776664 677777777777777777777754 322                


Q ss_pred             CCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCC
Q 010335          154 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN  233 (513)
Q Consensus       154 ~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~  233 (513)
                                       ++..|..|+||||+|+..|+.++|++|+++|++++..+..          |.||||+|+..++
T Consensus       133 -----------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~  185 (222)
T 3ehr_A          133 -----------------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE----------KKLAFDMATNAAC  185 (222)
T ss_dssp             -----------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT----------SCCHHHHCCSHHH
T ss_pred             -----------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC----------CCCHHHHhcchhH
Confidence                             5666777888888888888888888888888888888866          8888888888888


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCC
Q 010335          234 LKCCQVLLSRGASRMSLNCNGW  255 (513)
Q Consensus       234 ~eivk~LL~~Gad~~~~d~~G~  255 (513)
                      .++++.|+++|++.+.+|.+|+
T Consensus       186 ~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          186 ASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHC-----------------
T ss_pred             HHHHHHHhccchhhhccchhhh
Confidence            8888888888888877766654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.8e-22  Score=201.24  Aligned_cols=142  Identities=21%  Similarity=0.207  Sum_probs=120.5

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHH
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQTAL   82 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~----~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadvn~~d~~g~TpL   82 (513)
                      ..++|+.|++.|+++.+++|++.|++++..    ..+..|.||||+|+..   |+.+++++|+++|+++|.+|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            457899999999999999999999988752    1233459999999997   899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhh
Q 010335           83 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC  162 (513)
Q Consensus        83 h~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (513)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.                          
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~ga--------------------------  283 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQA--------------------------  283 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHH--------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcC--------------------------
Confidence            999999999999999999999998886 89999999999999999999986432                          


Q ss_pred             chhHHHHhcccccCCCCcHHHHHHHcCCH
Q 010335          163 DQSALSKFVNKAADGGITALHMAALNGYF  191 (513)
Q Consensus       163 ~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~  191 (513)
                                   +.|.||||+|+..|+.
T Consensus       284 -------------~~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          284 -------------GTFAFPLHVDYSWVIS  299 (301)
T ss_dssp             -------------HTTSSCCC--------
T ss_pred             -------------CCCCChhHHHHhcCCc
Confidence                         1478999999998864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=2.8e-22  Score=184.55  Aligned_cols=137  Identities=26%  Similarity=0.259  Sum_probs=122.7

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRY   88 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~   88 (513)
                      +.++||.|++.|+.+++++|++ +.+++..+..  |.||||+|+..|+.+++++|+++|+++|.+| ..|.||||+|+..
T Consensus        44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           44 YETPWWTAARKADEQALSQLLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            4589999999999999999999 8777665444  4999999999999999999999999999998 8999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      |+.+++++|+++|++++..+. .|.||||+|+..++.                                           
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~-------------------------------------------  156 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDE-RGLTALELAREILKT-------------------------------------------  156 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHHHT-------------------------------------------
T ss_pred             CcHHHHHHHHHcCCCCcCCCC-CCCCHHHHHHHhccC-------------------------------------------
Confidence            999999999999999998885 999999999863321                                           


Q ss_pred             HhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335          169 KFVNKAADGGITALHMAALNGYFDCVQLLLDL  200 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~  200 (513)
                             ..+.++|++|+..|+.+++++|.++
T Consensus       157 -------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 -------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             -------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             -------cccccHHHHHHHcCHHHHHHHHHHh
Confidence                   2356999999999999999999865

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=1.4e-22  Score=192.25  Aligned_cols=132  Identities=26%  Similarity=0.283  Sum_probs=110.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCcHHHHHHHcC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNG  123 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~-ga~~~~~~~~~G~TpLh~A~~~g  123 (513)
                      |.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.++|++|+++ |++++..+. .|.||||+|+..|
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~-~g~tpL~~A~~~~  151 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKG  151 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-TSCCHHHHHHHHT
T ss_pred             cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-CCCCHHHHHHHcC
Confidence            47999999999999999999999999999999999999999999999999999999 999998886 9999999999999


Q ss_pred             CHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 010335          124 HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN  203 (513)
Q Consensus       124 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gad  203 (513)
                      +.+++++|++.+..                                 ++..+..|.||||+|+..++.++++.|++.|++
T Consensus       152 ~~~~v~~Ll~~ga~---------------------------------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          152 YADIVQLLLAKGAR---------------------------------TDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             CHHHHHHHHHHTCC---------------------------------SCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             CHHHHHHHHHcCCC---------------------------------CccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            99999999987654                                 677888999999999999999999999999998


Q ss_pred             ccccccc
Q 010335          204 VSAVTFH  210 (513)
Q Consensus       204 vn~~~~~  210 (513)
                      .+..+..
T Consensus       199 ~~~~~~~  205 (222)
T 3ehr_A          199 RTLSNAE  205 (222)
T ss_dssp             -------
T ss_pred             hhccchh
Confidence            8776654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=3.2e-22  Score=193.13  Aligned_cols=142  Identities=25%  Similarity=0.243  Sum_probs=126.3

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQTALMQACRY   88 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~g~TpLh~A~~~   88 (513)
                      +.++||.|++.|+.+++++|++ +.+++..+..  |.||||+|+..|+.++|++|+++|+++|.+| ..|.||||+|+..
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVDAVDEN--GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTT--SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            4589999999999999999999 8877765544  4999999999999999999999999999998 8899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      |+.++|++|+++|++++..+. .|.||||+|+..++                                            
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~~~--------------------------------------------  156 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDE-RGLTALELAREILK--------------------------------------------  156 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHHT--------------------------------------------
T ss_pred             CCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHHHh--------------------------------------------
Confidence            999999999999999998886 99999999985211                                            


Q ss_pred             HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 010335          169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVS  205 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn  205 (513)
                            ...+.||||+|+..|+.+++++|++.+.+..
T Consensus       157 ------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~~  187 (244)
T 3ui2_A          157 ------TTPKGNPMQFGRRIGLEKVINVLEGQVFEYA  187 (244)
T ss_dssp             ------TCCCSSHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             ------ccCCCCHHHHHHHcChHHHHHHHHHhccccc
Confidence                  1347899999999999999999999766543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=4e-22  Score=171.03  Aligned_cols=117  Identities=27%  Similarity=0.280  Sum_probs=104.4

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         8 s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      +.+.++||.|++.|+++++++|++.+++++.....  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTT--SSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            45678999999999999999999999988765444  4899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHH
Q 010335           88 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC  127 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~i  127 (513)
                      .|+.++|++|+++|++++..+. .|.||||+|...+..++
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGP-DGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHhCCHHHHHH
Confidence            9999999999999999998885 99999999954444333

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=3.8e-22  Score=171.16  Aligned_cols=112  Identities=28%  Similarity=0.375  Sum_probs=102.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCC
Q 010335          111 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  190 (513)
Q Consensus       111 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~  190 (513)
                      .|.||||+|+..|+.+++++|++.+..                                 ++..+..|+||||+|+..|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~~~~   52 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGED---------------------------------VNRTLEGGRKPLHYAADCGQ   52 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTSCCTTSSCHHHHHHHTTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cCccCCCCCcHHHHHHHcCC
Confidence            678999999999999999999976543                                 56778889999999999999


Q ss_pred             HHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Q 010335          191 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  265 (513)
Q Consensus       191 ~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g  265 (513)
                      .+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|...+
T Consensus        53 ~~~v~~Ll~~g~~~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           53 LEILEFLLLKGADINAPDKH----------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             HHHHHHHHHcCCCCCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHH
Confidence            99999999999999999976          999999999999999999999999999999999999999994433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=5e-21  Score=188.58  Aligned_cols=196  Identities=21%  Similarity=0.162  Sum_probs=141.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNY-CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG  123 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~-~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g  123 (513)
                      +.+.|+++...|+..+.+++...-........ .+....    ....+-..+++................++|+.|+..|
T Consensus        66 ~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           66 GTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             CGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            46788888888887776665433211111000 111111    1122222334333222111111113457899999999


Q ss_pred             CHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHc---CCHHHHHHHHHc
Q 010335          124 HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN---GYFDCVQLLLDL  200 (513)
Q Consensus       124 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~---g~~eiv~~Ll~~  200 (513)
                      +.+.++.+++.+......                           ..++..+..|.||||+|+..   |+.+++++|+++
T Consensus       142 d~~~~~~ll~~g~~~~~~---------------------------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~  194 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEK---------------------------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN  194 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSB---------------------------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH
T ss_pred             ccHHHHHHHHhhcchhhh---------------------------ccccccccCCCCcchHHHHhcccchHHHHHHHHHC
Confidence            999999999876542111                           01455678899999999999   899999999999


Q ss_pred             CCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCCC
Q 010335          201 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAV  280 (513)
Q Consensus       201 Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~~  280 (513)
                      |++++..|..          |.||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..|+.+++++|.+.+...
T Consensus       195 ga~in~~d~~----------g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          195 SGNLDKQTGK----------GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CSCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999977          999999999999999999999999999999999999999999999999999998876544


Q ss_pred             C
Q 010335          281 M  281 (513)
Q Consensus       281 ~  281 (513)
                      .
T Consensus       265 ~  265 (278)
T 1dcq_A          265 F  265 (278)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=6.6e-21  Score=194.82  Aligned_cols=124  Identities=22%  Similarity=0.202  Sum_probs=114.7

Q ss_pred             cHHHHHHHHc-CCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           11 GERLVSAARD-GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        11 ~~~L~~Aa~~-G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      +++||.|+.. |++++++.||+.|++++.......|.||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+..|
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g  279 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG  279 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4689999999 999999999999999987664455699999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADF  135 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~  135 (513)
                      +.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+..+
T Consensus       280 ~~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          280 HTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999998886 9999999999999999999998654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=1.5e-20  Score=185.10  Aligned_cols=127  Identities=22%  Similarity=0.252  Sum_probs=116.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQTALMQ   84 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~----~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadvn~~d~~g~TpLh~   84 (513)
                      .+|+.|++.||++.++.+++.|.++...    ..+..|.||||+|+..   |+.+++++|+++|+++|.+|..|.||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            5799999999999999999999986533    2234469999999999   89999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCC
Q 010335           85 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV  139 (513)
Q Consensus        85 A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~  139 (513)
                      |+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+....
T Consensus       212 A~~~g~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999986 99999999999999999999998877543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=8.4e-21  Score=194.06  Aligned_cols=161  Identities=24%  Similarity=0.159  Sum_probs=107.3

Q ss_pred             CcHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHc
Q 010335           46 NSPLHFAAAK-GHNEIVALLLENGADVNSRN--YCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN  122 (513)
Q Consensus        46 ~TpLh~Aa~~-g~~eivk~LL~~Gadvn~~d--~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~  122 (513)
                      .|+||+|+.. |++++|++||++|+++|..+  ..|.||||+|+..|+.++|++|+++|++++..+. .|+||||+|+..
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~-~G~TpLh~A~~~  278 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-AGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHc
Confidence            4789999998 99999999999999999888  7899999999999999999999999999988775 889999999999


Q ss_pred             CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 010335          123 GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA  202 (513)
Q Consensus       123 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga  202 (513)
                      |+.+++++|++.++.                                 ++..|..|.||||+|+..|+.+++++|++.+.
T Consensus       279 g~~~~v~~LL~~Gad---------------------------------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          279 GHTGLACLFLKRGAD---------------------------------LGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             TCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHCcCC---------------------------------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999999877654                                 66778888999999999999999999987764


Q ss_pred             CcccccccCCccccccCCCCchhHHHhhCCCH--HHHHHHHHCCCCC
Q 010335          203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL--KCCQVLLSRGASR  247 (513)
Q Consensus       203 dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~--eivk~LL~~Gad~  247 (513)
                      ........       ...+.|+|+++......  +-.+.|..++.++
T Consensus       326 ~~~~~~~~-------~~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~~  365 (368)
T 3jue_A          326 REAEAAQG-------QAGDETYLDIFRDFSLMASDDPEKLSRRSHDL  365 (368)
T ss_dssp             -----------------------------------------------
T ss_pred             Cccccccc-------CCCCCCHHHHHHHHHhhcCCCHHHHHhcCCCc
Confidence            32211110       01267787776654432  2334444444443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=3.6e-20  Score=150.71  Aligned_cols=91  Identities=47%  Similarity=0.684  Sum_probs=81.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCC
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH  124 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~  124 (513)
                      |+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCC
Confidence            48999999999999999999999999999999999999999999999999999999999988875 89999999999999


Q ss_pred             HHHHHHHHHccC
Q 010335          125 VRCIRLVVADFV  136 (513)
Q Consensus       125 ~~iv~~Ll~~~~  136 (513)
                      .+++++|++.++
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999987764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=5.1e-20  Score=149.82  Aligned_cols=91  Identities=40%  Similarity=0.533  Sum_probs=85.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCc
Q 010335          177 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL  256 (513)
Q Consensus       177 ~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~T  256 (513)
                      +|+||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|.+|+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t   70 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT   70 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            4889999999999999999999999999999976          999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCccchhhhcCCCC
Q 010335          257 PLDVARMWGRHWLEPLLAPSS  277 (513)
Q Consensus       257 pL~~A~~~g~~~iv~lL~~~~  277 (513)
                      |||+|+..|+.+++++|.+.+
T Consensus        71 ~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           71 PLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999887654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=2.2e-19  Score=151.83  Aligned_cols=106  Identities=33%  Similarity=0.397  Sum_probs=87.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcC
Q 010335          110 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG  189 (513)
Q Consensus       110 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g  189 (513)
                      .+|+||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~~   53 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD---------------------------------VNARSKDGNTPLHLAAKNG   53 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTTTTCC---------------------------------SSCCCSSSCCTTHHHHTTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcC
Confidence            3688888888888888888888765433                                 5667778889999999999


Q ss_pred             CHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHH
Q 010335          190 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL  258 (513)
Q Consensus       190 ~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL  258 (513)
                      +.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.++..|.+|-
T Consensus        54 ~~~~~~~Ll~~g~~~~~~d~~----------g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           54 HAEIVKLLLAKGADVNARSKD----------GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CHHHHHHHTTTTCCTTCCCTT----------CCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             cHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            999999999999998888866          88999999999999999999999999998888888874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=6.1e-19  Score=149.04  Aligned_cols=109  Identities=36%  Similarity=0.444  Sum_probs=75.4

Q ss_pred             CCCCCCCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q 010335            4 SFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALM   83 (513)
Q Consensus         4 ~~g~s~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh   83 (513)
                      .+.-..+.++||.|++.|+++++++|++.+++++..+..  |.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~--g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSS--SCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC--CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            344455566777777777777777777777766554433  367777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCcccCCCCCcH
Q 010335           84 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTA  115 (513)
Q Consensus        84 ~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~Tp  115 (513)
                      +|+..|+.+++++|+++|++++..+. .|.+|
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~-~~~~~  111 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSW-GSSHH  111 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSC-CCC--
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCc-ccccc
Confidence            77777777777777777777776664 55554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=4.8e-18  Score=142.78  Aligned_cols=94  Identities=31%  Similarity=0.308  Sum_probs=85.8

Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCc
Q 010335          171 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL  250 (513)
Q Consensus       171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~  250 (513)
                      ....+.+|.|+||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~----------g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~   86 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAGADVXAQ   86 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            5667788999999999999999999999999999999866          999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCccchhhhcC
Q 010335          251 NCNGWLPLDVARMWGRHWLEPLLA  274 (513)
Q Consensus       251 d~~G~TpL~~A~~~g~~~iv~lL~  274 (513)
                      |..|+||||+|+..|+.+++++|.
T Consensus        87 d~~g~tpl~~A~~~~~~~~~~~L~  110 (110)
T 2zgd_A           87 DKFGKTAFDISIDNGNEDLAEILQ  110 (110)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHhC
Confidence            999999999999999999998873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=2e-17  Score=138.96  Aligned_cols=89  Identities=35%  Similarity=0.436  Sum_probs=82.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335           42 FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV  121 (513)
Q Consensus        42 ~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~  121 (513)
                      +..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+.
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~   99 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK-FGKTAFDISID   99 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-CCCcHHHHHHH
Confidence            33458999999999999999999999999999999999999999999999999999999999998885 89999999999


Q ss_pred             cCCHHHHHHH
Q 010335          122 NGHVRCIRLV  131 (513)
Q Consensus       122 ~g~~~iv~~L  131 (513)
                      .|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            9999999887

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.53  E-value=4.9e-08  Score=72.93  Aligned_cols=55  Identities=27%  Similarity=0.543  Sum_probs=45.6

Q ss_pred             CccccccchhhhcccceEEee--CCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          313 SSDDADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       313 s~~~~~~C~iC~~~~~~v~~~--~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      +..+...|.||+++..+.++.  ||||. +|..|+..+....            ..||+||..|..++++
T Consensus         4 ~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CPiCR~~i~~~i~i   61 (64)
T 2vje_A            4 PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN------------KPCPVCRQPIQMIVLT   61 (64)
T ss_dssp             -CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT------------CCCTTTCCCCCEEEEE
T ss_pred             CCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC------------CcCCCcCcchhceEee
Confidence            455678999999999999887  99999 8999999886432            2599999999988764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.41  E-value=1.5e-07  Score=70.01  Aligned_cols=53  Identities=25%  Similarity=0.515  Sum_probs=43.8

Q ss_pred             cccccchhhhcccceEEee--CCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          315 DDADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~--~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      .....|.||++...+.++.  ||||. +|..|+..+-...            ..||+||..|..++++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CPiCR~~i~~~i~i   60 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG------------ASCPICKKEIQLVIKV   60 (63)
T ss_dssp             GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT------------CBCTTTCCBCCEEEEE
T ss_pred             CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC------------CcCCCcCchhhceEEE
Confidence            4567899999998877666  99999 8999999886442            2599999999988765

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=3.5e-07  Score=69.13  Aligned_cols=52  Identities=31%  Similarity=0.749  Sum_probs=44.3

Q ss_pred             ccccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      ..+...|.||++...++++.||||. +|..|+..+                ..||+||..|..++++-.
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------------~~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----------------QQCPMCRQFVQESFALSG   64 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----------------SSCTTTCCCCCCEECCCS
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----------------CCCCCCCcchhceEEeec
Confidence            3456889999999999999999999 999999743                149999999999887643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.15  E-value=2.3e-07  Score=79.82  Aligned_cols=97  Identities=21%  Similarity=0.520  Sum_probs=60.5

Q ss_pred             ccccchhhhcccceE-------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC------
Q 010335          316 DADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS------  382 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v-------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~------  382 (513)
                      +...|.||++.....       +..+|||.+|..|...+.....            .||+||..+..-...+-.      
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~------------~CP~Cr~~~~~~~l~~l~i~~~~~   73 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN------------TCPTCRKKINHKRYHPIYIGSGTV   73 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS------------BCTTTCCBCTTTCEEECBCSSSSC
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC------------CCCCCCCcCccccccccccCCCCC
Confidence            457899999876554       8889999999999988864422            477777665422111110      


Q ss_pred             --Cc--ccccc-----------ccccccCccccCCCCCCCCCCCCCchhhccccccc
Q 010335          383 --PV--KDIKQ-----------PLSLGLCTPCMLHTRDAECESPACAPEIRKNRVAL  424 (513)
Q Consensus       383 --~~--~~~~~-----------~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                        ++  .++..           .=.-.||..|....-+....||+||.++.++.+.+
T Consensus        74 ~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~  130 (133)
T 4ap4_A           74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP  130 (133)
T ss_dssp             BCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEE
T ss_pred             CCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhccee
Confidence              00  00000           00124666675544445679999999998876543

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.02  E-value=2.6e-06  Score=66.31  Aligned_cols=49  Identities=31%  Similarity=0.644  Sum_probs=42.0

Q ss_pred             ccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335          316 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  380 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~  380 (513)
                      +...|.||++...++++.||||. +|..|+..+-                .||+||..|..++++-
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----------------~CP~Cr~~i~~~~~i~   66 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----------------SCPVCRSRVEHVQHVY   66 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----------------BCTTTCCBCCEEEECB
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----------------cCCCCCchhhCeEEEE
Confidence            34689999999999999999999 9999995441                4999999999987653

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=97.96  E-value=4.4e-06  Score=64.18  Aligned_cols=48  Identities=27%  Similarity=0.669  Sum_probs=41.1

Q ss_pred             ccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          316 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      +...|.||++...+.+..||||. +|..|...+                ..||+||..|...+++
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i   71 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI   71 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----------------SBCTTTCCBCSEEEEC
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----------------ccCCCcCcCccCcEEE
Confidence            45689999999999999999999 999998554                1499999999887654

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.81  E-value=5.7e-06  Score=63.69  Aligned_cols=47  Identities=28%  Similarity=0.664  Sum_probs=39.4

Q ss_pred             cccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          317 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       317 ~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      ...|.||++...+.+..||||. +|..|...+                ..||+||..|...+++
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i   72 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI   72 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----------------SBCTTTCCBCCCCCBC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----------------CCCccCCceecCcEEE
Confidence            4679999999999999999999 999998432                2599999999876543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=97.78  E-value=4.2e-05  Score=59.18  Aligned_cols=57  Identities=25%  Similarity=0.500  Sum_probs=42.2

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      ..+...|.||++.....+..+|||.+|..|...+......     ...+...||+||..+..
T Consensus         9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~-----~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVT-----SMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSS-----SCCCCCCCSSSCCCCCS
T ss_pred             cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhccc-----CCCCCCcCCCCCCcCCH
Confidence            3456789999998888777899999999999766433211     11235579999998764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=1.8e-05  Score=60.02  Aligned_cols=50  Identities=28%  Similarity=0.582  Sum_probs=40.8

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      ..+...|.||++.....+..+|||.+|..|...+....            ..||+||..|..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG------------KRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS------------SBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC------------CcCcCcCchhCH
Confidence            34567899999999988888999999999998765432            259999998763

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=97.70  E-value=1.9e-05  Score=59.25  Aligned_cols=53  Identities=30%  Similarity=0.625  Sum_probs=42.5

Q ss_pred             ccccchhhhcccce-EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335          316 DADTCAVCLERACT-VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  380 (513)
Q Consensus       316 ~~~~C~iC~~~~~~-v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~  380 (513)
                      ....|.||++.... +...+|||.+|..|...+....            ..||+||..+..+....
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------------PTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------------CSTTTTCCCCCCEECCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc------------CcCcCCChhhHhhhhcc
Confidence            45789999998876 5888999999999998876442            25999999988765543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.68  E-value=4.6e-05  Score=59.66  Aligned_cols=55  Identities=27%  Similarity=0.587  Sum_probs=42.3

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      .+...|.||++.....+..+|||.+|..|...+......      ..+...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~------~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRN------TDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBC------TTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccC------CCCCCCCCCCCCcCCH
Confidence            456789999998888778899999999999887655210      1134579999988764

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=97.68  E-value=2.6e-05  Score=55.74  Aligned_cols=47  Identities=28%  Similarity=0.543  Sum_probs=38.3

Q ss_pred             ccccchhhhcccce----EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          316 DADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       316 ~~~~C~iC~~~~~~----v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ....|.||++...+    +...+|||.+|..|...+....            ..||+||..|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG------------YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT------------CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC------------CcCCCCCCcCC
Confidence            45789999987644    7888999999999998886553            25999998764

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.66  E-value=3.8e-05  Score=58.42  Aligned_cols=51  Identities=25%  Similarity=0.724  Sum_probs=40.8

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .+...|.||++.....+..+|||.+|..|...+....         .....||+||..+.
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS---------CGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSS---------CSCCCCSSSCCCCC
T ss_pred             ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcC---------CCCCCCCCCCCcCC
Confidence            4567899999998888888999999999998886421         12346999998864

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=97.61  E-value=3.6e-05  Score=66.67  Aligned_cols=48  Identities=29%  Similarity=0.634  Sum_probs=39.5

Q ss_pred             cccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335          317 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  376 (513)
Q Consensus       317 ~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~  376 (513)
                      ...|.||++...+.+..+|||.+|..|...+....            ..||+||..|...
T Consensus        53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK------------IECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC------------SBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCCceECCCCCCccHHHHHHHHHcC------------CcCCCCCCcCCCC
Confidence            34699999999999999999999999998775332            2499999988654

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=97.59  E-value=4.4e-05  Score=54.58  Aligned_cols=48  Identities=33%  Similarity=0.660  Sum_probs=36.6

Q ss_pred             cccccchhhhcccce---EEeeC-CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          315 DDADTCAVCLERACT---VAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~---v~~~~-Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ++...|.||++....   +...+ |||.+|..|...+....            ..||+||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~------------~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH------------STCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC------------CSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC------------CcCcCCCCEeE
Confidence            456789999987665   56666 99999999997775331            25999998763

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.57  E-value=7.1e-05  Score=58.60  Aligned_cols=62  Identities=24%  Similarity=0.529  Sum_probs=44.3

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  382 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  382 (513)
                      .+...|.||++.....+..+|||.+|..|...+......      ..+...||+||..+..-...+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~------~~~~~~CP~Cr~~~~~~~~~~n~   78 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML------DKGESSCPVCRISYQPENIRPNR   78 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH------TTSCCCCTTTCCSSCSSSCCCSC
T ss_pred             cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc------CCCCCcCCCCCCccCHHhcCccH
Confidence            456789999999888777899999999999887644100      01234699999987753333333

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.56  E-value=4e-05  Score=58.52  Aligned_cols=55  Identities=27%  Similarity=0.659  Sum_probs=43.1

Q ss_pred             cccccchhhhcccc---eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335          315 DDADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       315 ~~~~~C~iC~~~~~---~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      .....|.||++...   .+...+|||.+|..|...+.....            .||+||..|..+..+++
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~------------~CP~Cr~~~~~~~~~~~   70 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK------------VCPLCNMPVLQLAQLSG   70 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS------------BCTTTCCBCSSCCSCCC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC------------cCCCcCcccccccccCC
Confidence            45678999998753   345569999999999988865531            49999999988777665

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.55  E-value=7e-05  Score=56.89  Aligned_cols=51  Identities=18%  Similarity=0.383  Sum_probs=40.3

Q ss_pred             ccccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335          314 SDDADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  376 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~  376 (513)
                      ..+...|.||++...+.+.. +|||.+|..|...+....            ..||+||..+..-
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~   63 (72)
T 2djb_A           12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS------------NRCPKCNIVVHQT   63 (72)
T ss_dssp             CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC------------SSCTTTCCCCCSS
T ss_pred             cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC------------CcCCCcCcccCcc
Confidence            34567899999988766655 999999999998886542            2599999887654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.55  E-value=3.7e-05  Score=57.71  Aligned_cols=49  Identities=22%  Similarity=0.650  Sum_probs=39.1

Q ss_pred             ccccccchhhhcccceE-------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          314 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v-------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ..+...|.||++.....       +..+|||.+|..|...+....            ..||+||..|.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~   67 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKIN   67 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC------------SSCTTTCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC------------CCCCCCCCccC
Confidence            45678899999876553       778999999999998886542            25999998865

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.54  E-value=9.6e-05  Score=55.52  Aligned_cols=51  Identities=29%  Similarity=0.557  Sum_probs=39.6

Q ss_pred             ccccccchhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335          314 SDDADTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  376 (513)
Q Consensus       314 ~~~~~~C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~  376 (513)
                      ......|.||++..   ..+...+|||.+|..|...+.....            .||+||..|...
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~------------~CP~Cr~~~~~~   64 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK------------KCPICRVDIEAQ   64 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS------------BCTTTCSBSCSC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC------------CCcCcCccccCc
Confidence            34567899998754   4567789999999999988865521            499999887653

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=97.50  E-value=5.6e-05  Score=58.34  Aligned_cols=60  Identities=13%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCcc
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVK  385 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~~  385 (513)
                      .+...|.||++...+.+..+|||.+|..|...+...           +...||+||..+..-...|...++
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-----------~~~~CP~C~~~~~~~~l~~n~~l~   65 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-----------GHKTCPKSQETLLHAGLTPNYVLK   65 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-----------TCCBCTTTCCBCSSCCCEECTTTH
T ss_pred             cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-----------CcCCCCCCcCCCChhhCccCHHHH
Confidence            346789999999888888899999999999888743           123699999988755555554443

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.49  E-value=8.5e-05  Score=57.83  Aligned_cols=48  Identities=23%  Similarity=0.481  Sum_probs=40.2

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .....|.||++.....+..+|||.+|..|...+....            ..||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT------------PRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC------------SBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC------------CcCCCcCcccc
Confidence            3456899999998888889999999999998886542            25999999886

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=97.48  E-value=4e-05  Score=57.92  Aligned_cols=50  Identities=22%  Similarity=0.636  Sum_probs=39.5

Q ss_pred             CccccccchhhhcccceE-------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          313 SSDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       313 s~~~~~~C~iC~~~~~~v-------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ...+...|.||++.....       ...+|||.+|..|...+....            ..||+||..+.
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~   62 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKIN   62 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC------------CCCCCCCCccC
Confidence            345678899999876553       788999999999998886542            25999998875

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=3.9e-05  Score=57.91  Aligned_cols=50  Identities=22%  Similarity=0.672  Sum_probs=40.2

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  377 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~  377 (513)
                      .+...|.||++.... +..+|||.+|..|...+...            ...||+||..|....
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~------------~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR------------HRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC------------CSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC------------cCcCCCcCCcccCCC
Confidence            456889999999888 78899999999999776432            235999998877543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=6e-05  Score=56.19  Aligned_cols=49  Identities=31%  Similarity=0.682  Sum_probs=39.5

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .+...|.||++.....+..+|||.+|..|...+...           ....||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-----------SSPKCTACQESIV   61 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-----------SSCCCTTTCCCCC
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-----------CcCCCCCCCcCCC
Confidence            456789999998887777899999999999888642           1235999998865

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.45  E-value=7.4e-05  Score=59.65  Aligned_cols=49  Identities=18%  Similarity=0.440  Sum_probs=38.5

Q ss_pred             ccccccchhhhcccce---EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          314 SDDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~---v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ......|.||++....   +...+|||.+|..|...+....            ..||+||..+.
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~------------~~CP~Cr~~~~   88 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS------------GTCPVCRCMFP   88 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT------------CBCTTTCCBSS
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC------------CcCcCcCccCC
Confidence            3456789999987655   7778999999999998886442            25999998764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.45  E-value=7.6e-05  Score=57.72  Aligned_cols=51  Identities=22%  Similarity=0.494  Sum_probs=37.4

Q ss_pred             ccccccchhhhccc--ceEEeeC--CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          314 SDDADTCAVCLERA--CTVAAEG--CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       314 ~~~~~~C~iC~~~~--~~v~~~~--Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      ..+...|.||++..  .+..+.+  |||.+|..|...+...           +...||+||..+..
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-----------~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----------ENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-----------SCSBCTTTCCBCSS
T ss_pred             cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-----------CCCCCCCCCCccCC
Confidence            34567899999965  2345555  9999999999887532           12369999988765

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.42  E-value=0.00013  Score=57.55  Aligned_cols=52  Identities=21%  Similarity=0.553  Sum_probs=41.0

Q ss_pred             ccccccchhhhcccce----EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          314 SDDADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~----v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ..+...|.||++....    ....+|||.+|..|...+.....         ....||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI---------NGVRCPFCSKITR   67 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS---------SCBCCTTTCCCBC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC---------CCcCCCCCCCccc
Confidence            3456789999998877    77789999999999998875531         2346999998754

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.41  E-value=6.8e-05  Score=55.70  Aligned_cols=48  Identities=23%  Similarity=0.514  Sum_probs=35.2

Q ss_pred             cccchhhhc-ccceE----EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          317 ADTCAVCLE-RACTV----AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       317 ~~~C~iC~~-~~~~v----~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      ...|.||++ .....    +..+|||.+|..|...+....           ...||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----------AGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-----------SSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-----------CCcCCCCCCcccc
Confidence            467999999 33222    567999999999998885431           2369999988753

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=97.39  E-value=0.00015  Score=57.91  Aligned_cols=51  Identities=20%  Similarity=0.443  Sum_probs=40.4

Q ss_pred             ccccccchhhhcccceEEeeC-CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          314 SDDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~-Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ..+...|.||++...+.+..+ |||.+|..|...+....          +...||+||..+.
T Consensus        10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES----------DEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC----------TTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc----------CCCcCcCCCCcCC
Confidence            345678999999888888889 99999999998776432          1236999998864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.38  E-value=0.00021  Score=55.07  Aligned_cols=55  Identities=22%  Similarity=0.452  Sum_probs=40.8

Q ss_pred             ccccccchhhhccc---ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335          314 SDDADTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  380 (513)
Q Consensus       314 ~~~~~~C~iC~~~~---~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~  380 (513)
                      ......|.||++..   ..+...+|||.+|..|...+....            ..||+||..+..-...+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH------------DSCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT------------CSCTTTCCCCCCSCSCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC------------CcCcCcCCccCCcccCC
Confidence            34568999998764   345667999999999998886432            25999999887654443

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.38  E-value=7.4e-05  Score=57.22  Aligned_cols=49  Identities=24%  Similarity=0.552  Sum_probs=38.0

Q ss_pred             cccccchhhhcccc---eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          315 DDADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       315 ~~~~~C~iC~~~~~---~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      .....|.||++...   .+...+|||.+|..|...+....            ..||+||..+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~------------~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN------------RTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC------------SSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC------------CcCcCcCCcCCC
Confidence            45678999997543   45778999999999998886553            159999988653

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=97.35  E-value=0.00013  Score=55.73  Aligned_cols=50  Identities=20%  Similarity=0.464  Sum_probs=40.2

Q ss_pred             cccccchhhhcccceEEeeC-CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          315 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~-Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .+...|.||++...+.+..+ |||.+|..|...+....          +...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~~CP~Cr~~~~   63 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES----------DEHTCPTCHQNDV   63 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS----------SSSCCSSSCCSSC
T ss_pred             CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc----------CCCcCCCCCCcCC
Confidence            45678999999988888889 99999999998887542          1235999998643

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=97.33  E-value=7.3e-05  Score=55.10  Aligned_cols=48  Identities=23%  Similarity=0.644  Sum_probs=37.5

Q ss_pred             ccccchhhhcccce-------EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          316 DADTCAVCLERACT-------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       316 ~~~~C~iC~~~~~~-------v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      +...|.||++....       +...+|||.+|..|...+....            ..||+||..+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC------------SBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC------------CCCCCCCccCCc
Confidence            34679999987654       3778999999999998886542            159999988763

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.30  E-value=0.00011  Score=55.22  Aligned_cols=52  Identities=25%  Similarity=0.482  Sum_probs=42.8

Q ss_pred             CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccccCC
Q 010335          363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSD  428 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (513)
                      ...|+||.......+.+|+ |          +.+|..|+.    ....||+||.+|......+.++|
T Consensus        15 ~~~C~IC~~~~~~~v~~pCgH----------~~~C~~C~~----~~~~CP~CR~~i~~~~~i~~~~s   67 (68)
T 2ea5_A           15 SKDCVVCQNGTVNWVLLPCRH----------TCLCDGCVK----YFQQCPMCRQFVQESFALSGPSS   67 (68)
T ss_dssp             SSCCSSSSSSCCCCEETTTTB----------CCSCTTHHH----HCSSCTTTCCCCCCEECCCSSCC
T ss_pred             CCCCCCcCcCCCCEEEECCCC----------hhhhHHHHh----cCCCCCCCCcchhceEEeecCCC
Confidence            4579999999999999999 6          139999966    35899999999999876666543

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=97.29  E-value=0.00013  Score=61.75  Aligned_cols=49  Identities=22%  Similarity=0.546  Sum_probs=40.0

Q ss_pred             ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      +...|.||++...+.+..+|||.+|..|........           ...||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ-----------VFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC-----------cCCCCCCCccCCC
Confidence            346799999999888888999999999998776531           2259999998865

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.28  E-value=0.00013  Score=72.90  Aligned_cols=49  Identities=33%  Similarity=0.710  Sum_probs=42.4

Q ss_pred             ccccchhhhcccceEEeeCCCcc-cchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335          316 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  380 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~-~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~  380 (513)
                      +...|.||++...+.+..||||. +|..|+..+                ..||+||..|...+++.
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----------------~~CP~CR~~i~~~~~i~  343 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----------------RKCPICRGIIKGTVRTF  343 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----------------SBCTTTCCBCCEEEECC
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----------------CcCCCCCCCccCeEEee
Confidence            34789999999999999999999 999999655                14999999999988764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=97.23  E-value=0.00019  Score=72.23  Aligned_cols=52  Identities=27%  Similarity=0.618  Sum_probs=43.1

Q ss_pred             ccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecC
Q 010335          318 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  380 (513)
Q Consensus       318 ~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~  380 (513)
                      ..|.||++.....+..+|||.+|..|...+....           ...||+||..|.....+.
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~-----------~~~CP~CR~~i~~~~~i~  384 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE-----------GQGCPFCRCEIKGTEPIV  384 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT-----------CSBCTTTCCBCCEEEECS
T ss_pred             CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC-----------CCCCCCCCCccCCceeEe
Confidence            6899999999999999999999999998876521           225999999988765543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.22  E-value=0.00013  Score=60.42  Aligned_cols=52  Identities=31%  Similarity=0.687  Sum_probs=41.0

Q ss_pred             ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335          316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  376 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~  376 (513)
                      ....|.||++.....+..+|||.+|..|...+.....         +...||+||..+..-
T Consensus        20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK---------GPSQCPLCKNDITKR   71 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS---------SSCCCTTTSCCCCTT
T ss_pred             CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC---------CCCCCcCCCCcCCHh
Confidence            3467999999888877789999999999988875431         224699999887643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=97.18  E-value=0.0002  Score=62.88  Aligned_cols=50  Identities=24%  Similarity=0.577  Sum_probs=41.0

Q ss_pred             ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335          316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  376 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~  376 (513)
                      +...|.||++...+.+..+|||.+|..|...+....           ...||+||..+..-
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ-----------VFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC-----------CCcCCCCCccCCCC
Confidence            346899999999888889999999999998887542           22599999987754

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=97.17  E-value=0.00012  Score=61.05  Aligned_cols=50  Identities=28%  Similarity=0.640  Sum_probs=39.9

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      .+...|.||++.....+..+|||.+|..|...+...           +...||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-----------ASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-----------TTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-----------CcCCCCCCCcccCc
Confidence            446789999999888888899999999999666432           12369999999875

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=97.17  E-value=0.00018  Score=58.51  Aligned_cols=50  Identities=20%  Similarity=0.526  Sum_probs=40.9

Q ss_pred             cccccchhhhcccceEEe-eCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          315 DDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~-~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      .+...|.||++.....+. .+|||.+|..|...+.....           ..||+||..+..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~   70 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-----------AQCPHCRAPLQL   70 (100)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-----------SBCTTTCCBCCG
T ss_pred             CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-----------CCCCCCCCcCCH
Confidence            356789999999888877 99999999999988875531           259999998754

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.16  E-value=9.1e-05  Score=53.31  Aligned_cols=45  Identities=24%  Similarity=0.499  Sum_probs=36.1

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .+...|.||++...+....+|||.+|..|...               ....||+||..+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---------------~~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---------------SGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---------------SSSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---------------CCCCCCcCCcEee
Confidence            34567999999988888899999999999743               1235999998864

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=97.11  E-value=0.00028  Score=57.12  Aligned_cols=48  Identities=25%  Similarity=0.562  Sum_probs=38.9

Q ss_pred             ccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          316 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      +...|.||++...+.+.. +|||.+|..|...+....            ..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK------------TQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC------------CBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC------------CCCCCCCCcCCh
Confidence            456899999988877666 999999999998886432            259999998765

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=97.10  E-value=0.0002  Score=54.68  Aligned_cols=47  Identities=21%  Similarity=0.429  Sum_probs=39.8

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRKNRVALVS  426 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (513)
                      .|++|.......+.+|+ |           . +|..|....    ..||+||.+|.+..-.++|
T Consensus        26 ~C~iC~~~~~~~~~~pCgH-----------~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~S   74 (74)
T 4ic3_A           26 LCKICMDRNIAIVFVPCGH-----------LVTCKQCAEAV----DKCPMCYTVITFKQKILMS   74 (74)
T ss_dssp             BCTTTSSSBCCEEEETTCC-----------BCCCHHHHTTC----SBCTTTCCBCSEEEECBC-
T ss_pred             CCCCCCCCCCCEEEcCCCC-----------hhHHHHhhhcC----ccCCCcCcCccCcEEEeeC
Confidence            59999999999999999 7           6 999996654    8999999999987655543

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.09  E-value=0.00019  Score=54.30  Aligned_cols=51  Identities=20%  Similarity=0.337  Sum_probs=42.3

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccc
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVA  423 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~  423 (513)
                      ....||||...+..-+.+|+ |           .||..|....-.....||+||.+|....+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   65 (71)
T 2d8t_A           14 TVPECAICLQTCVHPVSLPCKH-----------VFCYLCVKGASWLGKRCALCRQEIPEDFLD   65 (71)
T ss_dssp             SCCBCSSSSSBCSSEEEETTTE-----------EEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred             CCCCCccCCcccCCCEEccCCC-----------HHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence            34569999999999888888 8           899999877666668999999999876543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=97.07  E-value=0.0003  Score=62.73  Aligned_cols=49  Identities=27%  Similarity=0.698  Sum_probs=39.8

Q ss_pred             ccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          316 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      ....|.||++...+.+.. +|||.+|..|...+....           ...||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-----------NKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC-----------cCCCCCCCCcCCC
Confidence            456899999988887666 999999999998887541           2359999998854

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=97.05  E-value=0.00037  Score=57.39  Aligned_cols=49  Identities=20%  Similarity=0.507  Sum_probs=40.2

Q ss_pred             cccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          315 DDADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      .+...|.||++...+.+.. +|||.+|..|........            ..||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~   62 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS------------KYCPICDVQVHK   62 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC------------SBCTTTCCBSCS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC------------CcCcCCCccccc
Confidence            3567899999988888776 999999999998886442            259999988765

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.96  E-value=0.00052  Score=50.38  Aligned_cols=47  Identities=28%  Similarity=0.752  Sum_probs=37.1

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  369 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C  369 (513)
                      ..+...|.||++.....+..+|||.+|..|...+.....         ....||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC---------GFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS---------SCCCCSCC
T ss_pred             CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC---------CCCcCcCC
Confidence            345678999999988888889999999999998875311         12369998

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.96  E-value=0.00018  Score=55.12  Aligned_cols=47  Identities=21%  Similarity=0.424  Sum_probs=39.6

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRKNRVALVS  426 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (513)
                      .||||.......+.+|+ |           . +|..|..    ....||+||.+|..+...++|
T Consensus        27 ~C~IC~~~~~~~~~~pCgH-----------~~~C~~C~~----~~~~CP~Cr~~i~~~~~i~~S   75 (75)
T 2ecg_A           27 LCKICMDRNIAIVFVPCGH-----------LVTCKQCAE----AVDKCPMCYTVITFKQKIFMS   75 (75)
T ss_dssp             SCSSSCSSCCCBCCSSSCC-----------CCBCHHHHH----HCSBCTTTCCBCCCCCBCCCC
T ss_pred             CCCcCCCCCCCEEEecCCC-----------HHHHHHHhh----CCCCCccCCceecCcEEEecC
Confidence            59999999999999999 7           6 9999963    357999999999987666553

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.92  E-value=0.00055  Score=53.24  Aligned_cols=47  Identities=34%  Similarity=0.723  Sum_probs=33.9

Q ss_pred             ccccchhhhcccce--------------E-EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          316 DADTCAVCLERACT--------------V-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       316 ~~~~C~iC~~~~~~--------------v-~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      +.+.|.||++....              + ...+|||.++..|.........            .||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN------------RCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC------------BCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC------------CCCCcCCCcc
Confidence            45667777765532              3 4446999999999988865431            5999998864

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=96.91  E-value=0.00059  Score=56.67  Aligned_cols=54  Identities=24%  Similarity=0.581  Sum_probs=38.4

Q ss_pred             ccccchhhhcccc------------------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335          316 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  376 (513)
Q Consensus       316 ~~~~C~iC~~~~~------------------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~  376 (513)
                      ..+.|.||++...                  .+...+|||.+|..|...+......       .....||+||..+...
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~-------~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-------DGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-------SSCCBCTTTCCBSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC-------CCCCcCCCCCCccCCC
Confidence            3468999998763                  3347899999999999988743110       1233699999877644

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=96.90  E-value=0.00055  Score=57.34  Aligned_cols=58  Identities=17%  Similarity=0.446  Sum_probs=44.4

Q ss_pred             CccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335          313 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       313 s~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      ...+...|.||++.....+..+|||.+|..|...+.....           ..||+||..+..-...|.
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~~~~~~   71 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLENQLFPD   71 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC-----------CCCCCCCCCcCHHhcccC
Confidence            3445678999999888888889999999999988765421           159999998876443444

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=96.89  E-value=0.00041  Score=53.73  Aligned_cols=47  Identities=17%  Similarity=0.418  Sum_probs=40.0

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRKNRVALVS  426 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (513)
                      .|++|.......+.+|+ |           . +|..|+...    ..||+||.+|......+++
T Consensus        20 ~C~IC~~~~~~~v~~pCgH-----------~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~p   68 (79)
T 2yho_A           20 LCMVCCEEEINSTFCPCGH-----------TVCCESCAAQL----QSCPVCRSRVEHVQHVYLP   68 (79)
T ss_dssp             BCTTTSSSBCCEEEETTCB-----------CCBCHHHHTTC----SBCTTTCCBCCEEEECBCT
T ss_pred             EeEEeCcccCcEEEECCCC-----------HHHHHHHHHhc----CcCCCCCchhhCeEEEEeC
Confidence            59999999999999999 6           5 999996644    5999999999998666655

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.84  E-value=0.0012  Score=47.33  Aligned_cols=47  Identities=28%  Similarity=0.663  Sum_probs=36.4

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCC
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  369 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~C  369 (513)
                      ..+...|.||++.....+..+|||.+|..|...+.....         ....||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE---------RDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC---------CSCCCSCC
T ss_pred             cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC---------CCCCCCCC
Confidence            345678999999988888889999999999988853211         23369998

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.81  E-value=0.00037  Score=52.36  Aligned_cols=52  Identities=19%  Similarity=0.417  Sum_probs=42.3

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccc
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALV  425 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (513)
                      ....||||...+.. +.+|+ |           .||..|.....+....||+||.++......++
T Consensus        14 ~~~~C~IC~~~~~~-~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   66 (70)
T 2ecn_A           14 DEEECCICMDGRAD-LILPCAH-----------SFCQKCIDKWSDRHRNCPICRLQMTGANESSG   66 (70)
T ss_dssp             CCCCCSSSCCSCCS-EEETTTE-----------EECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred             CCCCCeeCCcCccC-cccCCCC-----------cccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence            45579999999988 77777 8           89999988776678899999999987654443

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=96.74  E-value=0.00012  Score=54.14  Aligned_cols=51  Identities=24%  Similarity=0.452  Sum_probs=39.2

Q ss_pred             CCCCCccccceeeec--CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccc
Q 010335          365 PCPLCRHGIVSFTKL--PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALV  425 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~--~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (513)
                      .|++|.......+.+  |+ |          +.+|..|+....+....||+||.+|...+.++.
T Consensus         9 ~C~IC~~~~~~~~~~~~pCgH----------~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            9 PCSLCEKRPRDGNIIHGRTGH----------LVTCFHCARRLKKAGASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             BCTTTSSSBSCEEEEETTEEE----------EEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred             CCcccCCcCCCeEEEecCCCC----------HhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence            599999887665555  88 6          138999987766556799999999988765553

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=96.71  E-value=0.00015  Score=53.71  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=41.0

Q ss_pred             CCCCCCccccceeeec--CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccc
Q 010335          364 IPCPLCRHGIVSFTKL--PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALV  425 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~~~~--~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (513)
                      ..|++|.......+.+  |+ |          +.+|..|+....+....||+||.+|...+.+++
T Consensus         9 ~~C~IC~~~~~~~~~~~~pCgH----------~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   63 (64)
T 2vje_A            9 EPCVICQGRPKNGCIVHGKTGH----------LMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF   63 (64)
T ss_dssp             SCCTTTSSSCSCEEEEETTEEE----------EEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred             CCCCcCCCCCCCEEEECCCCCC----------hhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence            3699999988888776  88 7          138999987766666789999999987665554

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=96.71  E-value=0.0008  Score=56.09  Aligned_cols=50  Identities=22%  Similarity=0.499  Sum_probs=40.6

Q ss_pred             ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335          316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  376 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~  376 (513)
                      +...|.||++...+.+..+|||.+|..|...+....           ...||+||..+..-
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM-----------GSYCPSCRYPCFPT   71 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-----------CSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-----------cCcCCCCCCCCCHh
Confidence            356899999998888889999999999998886542           12599999987653

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=96.71  E-value=0.00015  Score=54.72  Aligned_cols=53  Identities=23%  Similarity=0.653  Sum_probs=40.5

Q ss_pred             CCCCCCCCCCcccccee-------eecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccc
Q 010335          360 PPGSIPCPLCRHGIVSF-------TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVA  423 (513)
Q Consensus       360 ~~~~~~Cp~Cr~~i~~~-------~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~  423 (513)
                      +.....||||...+..-       +.+++ |           .||..|....-+....||+||.++....+.
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   67 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGH-----------VFCSQCLRDSLKNANTCPTCRKKINHKRYH   67 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSC-----------EEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCC-----------hHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence            34556799999988764       56666 8           899999866544567999999999876543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.67  E-value=0.00039  Score=52.64  Aligned_cols=53  Identities=15%  Similarity=0.397  Sum_probs=41.7

Q ss_pred             CCCCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335          363 SIPCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVS  426 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (513)
                      ...||||...+..-+.+ ++ |           .||..|....-+....||+||.++..+......
T Consensus        15 ~~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   69 (72)
T 2djb_A           15 YILCSICKGYLIDATTITECLH-----------TFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP   69 (72)
T ss_dssp             GGSCTTTSSCCSSCEECSSSCC-----------EECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred             CCCCCCCChHHHCcCEECCCCC-----------HHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence            45699999999877776 66 8           899999766554568999999999887654443

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.48  E-value=0.0009  Score=55.93  Aligned_cols=46  Identities=22%  Similarity=0.488  Sum_probs=37.8

Q ss_pred             ccccchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          316 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      +...|.||++.....+.. +|||.+|..|...+..              ..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------------~~CP~Cr~~~~~   67 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------------TGCPVCYTPAWI   67 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------------TBCSSSCCBCSC
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--------------CCCcCCCCcCcc
Confidence            457899999998888887 9999999999977643              259999998743

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.44  E-value=0.00038  Score=51.99  Aligned_cols=51  Identities=22%  Similarity=0.654  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCCcccccee-------eecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          359 GPPGSIPCPLCRHGIVSF-------TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       359 ~~~~~~~Cp~Cr~~i~~~-------~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .......||||...+..-       +.+++ |           .||..|....-+....||+||.+|..+
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~r   69 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGH-----------VFCSQCLRDSLKNANTCPTCRKKINHK   69 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSC-----------EEEHHHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCC-----------hhcHHHHHHHHHcCCCCCCCCCccCcC
Confidence            334566799999988764       56666 8           899999766544567999999998753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=96.39  E-value=0.0014  Score=46.54  Aligned_cols=43  Identities=19%  Similarity=0.451  Sum_probs=35.6

Q ss_pred             CCCCCCccccce---eeecC-C-CCccccccccccccCccccCCCCCCCCCCCCCchhh
Q 010335          364 IPCPLCRHGIVS---FTKLP-G-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEI  417 (513)
Q Consensus       364 ~~Cp~Cr~~i~~---~~~~~-~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~  417 (513)
                      ..||||...+..   .+.+| + +           .||..|.....+....||+||.++
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~~C~H-----------~f~~~Ci~~w~~~~~~CP~Cr~~~   53 (55)
T 1iym_A            6 VECAVCLAELEDGEEARFLPRCGH-----------GFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCTTTCCCCCTTSCCEECSSSCC-----------EECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CcCccCCccccCCCceEECCCCCC-----------cccHHHHHHHHHcCCcCcCCCCEe
Confidence            369999999877   67776 4 7           899999887777788999999876

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.36  E-value=0.002  Score=49.34  Aligned_cols=52  Identities=19%  Similarity=0.505  Sum_probs=39.1

Q ss_pred             CCCCCCCCccccc---eeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccccc
Q 010335          362 GSIPCPLCRHGIV---SFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVAL  424 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~---~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      ....||||...+.   .++.+|+ |           .||..|....-+....||+||.++....+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLPCNH-----------LFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECTTSC-----------EEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred             CCCCCeeCCccccCCCCEEEeCCCC-----------eecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence            3457999988764   4455677 8           8999998766555679999999998765443

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.36  E-value=0.0011  Score=50.01  Aligned_cols=49  Identities=20%  Similarity=0.550  Sum_probs=39.8

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC---CCCCCCCCchhhcccc
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD---AECESPACAPEIRKNR  421 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~---~~~~~~~~~~~~~~~~  421 (513)
                      ....||||...+..-+.+|+ |           .||..|....-+   ....||+||.++....
T Consensus        19 ~~~~C~IC~~~~~~~~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           19 EEVICPICLDILQKPVTIDCGH-----------NFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCBCTTTCSBCSSEEECTTCC-----------EEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             cCCEeccCCcccCCeEEcCCCC-----------hhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            45579999999999888888 8           899999866554   4568999999987653

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.33  E-value=0.0031  Score=45.10  Aligned_cols=43  Identities=21%  Similarity=0.471  Sum_probs=35.8

Q ss_pred             CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335          363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK  419 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~  419 (513)
                      ...||||......-+.+|+ |           .||..|...   ....||+||.++.-
T Consensus         6 ~~~C~IC~~~~~~p~~l~CgH-----------~fC~~Ci~~---~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            6 FLRCQQCQAEAKCPKLLPCLH-----------TLCSGCLEA---SGMQCPICQAPWPL   49 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSC-----------CSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred             CCCceEeCCccCCeEEcCCCC-----------cccHHHHcc---CCCCCCcCCcEeec
Confidence            3469999999998888888 8           899999665   45789999998764

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=96.33  E-value=0.0021  Score=49.27  Aligned_cols=48  Identities=19%  Similarity=0.511  Sum_probs=39.1

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-------CCCCCCCchhhccc
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-------ECESPACAPEIRKN  420 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-------~~~~~~~~~~~~~~  420 (513)
                      ....||||...+..-+.+|+ |           .||..|....-+.       ...||+||.++...
T Consensus        11 ~~~~C~IC~~~~~~p~~l~CgH-----------~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           11 EEVTCPICLELLTEPLSLDCGH-----------SLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCEETTTTEECSSCCCCSSSC-----------CCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             cCCCCcCCCcccCCeeECCCCC-----------HHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            44569999999888777888 8           8999998865443       67899999998764

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=96.33  E-value=0.00091  Score=57.92  Aligned_cols=49  Identities=20%  Similarity=0.430  Sum_probs=39.6

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      ..+...|.||++....-+..+|||.+|..|...+....           ...||+||..|
T Consensus        28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-----------~~~CP~Cr~~~   76 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG-----------PQNCAACVHEG   76 (141)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS-----------CEECHHHHHTT
T ss_pred             CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC-----------CCCCCCCCCcc
Confidence            34567899999988887888999999999998886432           22599999876

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=96.31  E-value=0.0025  Score=52.18  Aligned_cols=46  Identities=30%  Similarity=0.510  Sum_probs=34.3

Q ss_pred             ccccchhhhcccc------------------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          316 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       316 ~~~~C~iC~~~~~------------------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      ..+.|.||++...                  .+...+|||.++..|........            ..||+||..+
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------------~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------------QVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC------------SBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC------------CcCcCCCCcc
Confidence            4566777775432                  46778999999999998886542            2499999874

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=96.25  E-value=0.00071  Score=48.04  Aligned_cols=44  Identities=23%  Similarity=0.424  Sum_probs=35.0

Q ss_pred             CCCCCCccccce----eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhc
Q 010335          364 IPCPLCRHGIVS----FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIR  418 (513)
Q Consensus       364 ~~Cp~Cr~~i~~----~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~  418 (513)
                      ..||||...+..    .+.+|+ +           .||..|....-+....||+||.+|.
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            6 SGCPICLEDIHTSRVVAHVLPCGH-----------LLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CSCTTTCCCCCTTTSCEEECTTSC-----------EEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CcCcccChhhcCCCcCeEecCCCC-----------cccHHHHHHHHHcCCcCCCCCCcCC
Confidence            469999998855    777777 8           8999997665544589999998874

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=96.17  E-value=0.00095  Score=57.57  Aligned_cols=45  Identities=20%  Similarity=0.533  Sum_probs=39.3

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .||||...+..-+.+|+ |           .||..|....-+....||+||.++...
T Consensus        55 ~C~iC~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           55 QCIICSEYFIEAVTLNCAH-----------SFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             BCTTTCSBCSSEEEETTSC-----------EEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             CCcccCcccCCceECCCCC-----------CccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            49999999999888988 8           999999877666778999999998754

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.09  E-value=0.0011  Score=49.15  Aligned_cols=50  Identities=20%  Similarity=0.399  Sum_probs=39.7

Q ss_pred             CCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCC-CCCCCCCCCchhhcccc
Q 010335          361 PGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTR-DAECESPACAPEIRKNR  421 (513)
Q Consensus       361 ~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~-~~~~~~~~~~~~~~~~~  421 (513)
                      .....||||...+..-+.+++ |           .||..|....- +....||+||.++....
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGH-----------RFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSC-----------CCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             CcCCCCCCCChHhcCeeECCCCC-----------HHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            345569999999888777887 8           89999987654 34668999999987654

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.06  E-value=0.0054  Score=48.71  Aligned_cols=52  Identities=19%  Similarity=0.394  Sum_probs=37.1

Q ss_pred             cchhhhcccc-eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335          319 TCAVCLERAC-TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       319 ~C~iC~~~~~-~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      .|.+|.-... .....||.|.+|.+|+.......           ...||.|+.+|.++...+-
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~-----------~k~Cp~C~~~V~rVe~~~~   55 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG-----------DKMCPGCSDPVQRIEQCTR   55 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT-----------CCBCTTTCCBCSEEEEEEG
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc-----------CCCCcCcCCeeeeeEEecc
Confidence            3555543333 33788999999999998875442           2359999999999877543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=95.98  E-value=0.0013  Score=48.93  Aligned_cols=45  Identities=20%  Similarity=0.485  Sum_probs=36.2

Q ss_pred             CCCCCccccce-eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVS-FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~-~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .||||...+.. .+.+|+ |           .||..|.....+....||+||.++...
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            7 RCPICLEDPSNYSMALPCLH-----------AFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTE-----------EESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCeeCCccccCCcEecCCCC-----------eeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence            69999999877 477777 7           899999765544467999999998754

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=95.89  E-value=0.0034  Score=49.20  Aligned_cols=56  Identities=9%  Similarity=-0.131  Sum_probs=44.3

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  382 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  382 (513)
                      ...-.|.||++-..+-+..+|||.+|..|........            ..||+||..+..-..+|..
T Consensus        12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~------------~~cP~~~~~l~~~~l~pn~   67 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS------------PTDPFNRQMLTESMLEPVP   67 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCCGGGCEECH
T ss_pred             chheECcccCchhcCCeECCCCCEECHHHHHHHHhcC------------CCCCCCcCCCChHhcchHH
Confidence            3567899999999999999999999999998886531            1599999887655445553

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=95.88  E-value=0.0029  Score=53.67  Aligned_cols=49  Identities=22%  Similarity=0.646  Sum_probs=38.4

Q ss_pred             cccccchhhhcccceE-------EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          315 DDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v-------~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      .+...|.||++.....       ...+|||.+|..|........            ..||+||..+..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC------------SBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC------------CCCCCCCCcCCh
Confidence            4567899999866543       778999999999998876542            259999988753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.81  E-value=0.0054  Score=59.10  Aligned_cols=59  Identities=8%  Similarity=-0.077  Sum_probs=46.1

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCc
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  384 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~  384 (513)
                      ...-.|.||++-..+-+..+|||.+|..|........           ...||+||..+..-..+|...+
T Consensus       206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~-----------~~~cP~~~~~~~~~~l~~n~~l  264 (281)
T 2c2l_A          206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-----------GHFNPVTRSPLTQEQLIPNLAM  264 (281)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-----------CSSCTTTCCCCCGGGCEECHHH
T ss_pred             CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC-----------CCCCcCCCCCCchhcCcccHHH
Confidence            3567899999999999999999999999998876542           1139999998876555666433

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.78  E-value=0.0019  Score=49.97  Aligned_cols=46  Identities=17%  Similarity=0.299  Sum_probs=38.4

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhc
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIR  418 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~  418 (513)
                      ....||||...+..-+.+|+ |           .||..|....-+....||+||.++.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQNPVVTKCRH-----------YFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCSEEECTTSC-----------EEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcCeeEccCCC-----------HhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34569999999988888888 8           8999998666555778999999986

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.78  E-value=0.0035  Score=48.63  Aligned_cols=48  Identities=19%  Similarity=0.547  Sum_probs=38.6

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC------CCCCCCCCchhhccc
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD------AECESPACAPEIRKN  420 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~------~~~~~~~~~~~~~~~  420 (513)
                      ....||||...+..-+.+|+ |           .||..|....-.      ....||+||.++...
T Consensus        18 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           18 EEVTCPICLELLTQPLSLDCGH-----------SFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCTTTCSCCSSCBCCSSSC-----------CBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             CCCCCCCCCcccCCceeCCCCC-----------HHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            45679999999988888888 8           899999765422      267999999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.75  E-value=0.0018  Score=50.77  Aligned_cols=51  Identities=18%  Similarity=0.460  Sum_probs=39.5

Q ss_pred             CCCCCCCCccccce----eeecCC-CCccccccccccccCccccCCCCCC---CCCCCCCchhhcccccc
Q 010335          362 GSIPCPLCRHGIVS----FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA---ECESPACAPEIRKNRVA  423 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~----~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~---~~~~~~~~~~~~~~~~~  423 (513)
                      ....||||...+..    .+.+|+ |           .||..|....-+.   ...||+||.++....+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~   72 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLHCGH-----------TICRQCLEKLLASSINGVRCPFCSKITRITSLT   72 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECSSSC-----------EEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTT
T ss_pred             CCCCCccCCccccccCCCeEECCCCC-----------hhhHHHHHHHHHcCCCCcCCCCCCCcccchhHH
Confidence            34569999999887    777777 8           8999997655332   47999999998876443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.70  E-value=0.0049  Score=54.98  Aligned_cols=57  Identities=18%  Similarity=0.451  Sum_probs=43.7

Q ss_pred             ccccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCC
Q 010335          314 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  381 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~  381 (513)
                      ..+...|.||++...+.+..+|||.+|..|...+.....           ..||+||..+..-...|.
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~~~~~~   71 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLENQLFPD   71 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC
T ss_pred             CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC-----------CCCCCCccCcchhhhhhh
Confidence            446678999999888888889999999999988865421           159999988876433333

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=95.69  E-value=0.0008  Score=49.32  Aligned_cols=49  Identities=20%  Similarity=0.597  Sum_probs=37.5

Q ss_pred             CCCCCCcccccee-------eecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccccc
Q 010335          364 IPCPLCRHGIVSF-------TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVA  423 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~-------~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~  423 (513)
                      ..||||...+..-       +.+++ |           .||..|....-+....||+||.++....+.
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   60 (64)
T 2xeu_A            4 VSCPICMDGYSEIVQNGRLIVSTECGH-----------VFCSQCLRDSLKNANTCPTCRKKINHKRYH   60 (64)
T ss_dssp             CBCTTTCCBHHHHHHTTCCEEEETTSC-----------EEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred             CCCCccChhhhCccccCCCEEeCCCCC-----------chhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence            3599999988763       55555 8           899999766544567999999999876543

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=95.68  E-value=0.003  Score=51.17  Aligned_cols=56  Identities=9%  Similarity=-0.122  Sum_probs=43.7

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  382 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  382 (513)
                      ...-.|.||++-..+-+..+|||.+|..|........            ..||+||..+..-..+|..
T Consensus        27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~------------~~cP~~~~~l~~~~L~pn~   82 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS------------PTDPFNRQTLTESMLEPVP   82 (100)
T ss_dssp             STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSC------------SBCSSSCCBCCTTSSEECH
T ss_pred             cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcC------------CCCCCCCCCCChhhceECH
Confidence            3567899999999999999999999999998876431            2599999887654444443

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=95.63  E-value=0.0047  Score=61.54  Aligned_cols=47  Identities=23%  Similarity=0.472  Sum_probs=39.2

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccc-cCccccCCCCCCCCCCCCCchhhccccccccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLG-LCTPCMLHTRDAECESPACAPEIRKNRVALVS  426 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (513)
                      .||||.......+.+|| |           . +|..|....    ..||+||.+|.+..-.++|
T Consensus       297 ~C~IC~~~~~~~v~lpCgH-----------~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~s  345 (345)
T 3t6p_A          297 TCKVCMDKEVSVVFIPCGH-----------LVVCQECAPSL----RKCPICRGIIKGTVRTFLS  345 (345)
T ss_dssp             BCTTTSSSBCCEEEETTCC-----------EEECTTTGGGC----SBCTTTCCBCCEEEECC--
T ss_pred             CCCccCCcCCceEEcCCCC-----------hhHhHHHHhcC----CcCCCCCCCccCeEEeecC
Confidence            59999999999999999 7           6 999997644    7999999999987655543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=95.61  E-value=0.0031  Score=47.88  Aligned_cols=48  Identities=19%  Similarity=0.503  Sum_probs=37.6

Q ss_pred             CCCCCCCCCccccceeeecC-C-CCccccccccccccCccccCCCCCC--CCCCCCCchhhcc
Q 010335          361 PGSIPCPLCRHGIVSFTKLP-G-SPVKDIKQPLSLGLCTPCMLHTRDA--ECESPACAPEIRK  419 (513)
Q Consensus       361 ~~~~~Cp~Cr~~i~~~~~~~-~-~~~~~~~~~~~~~~c~~c~~~~~~~--~~~~~~~~~~~~~  419 (513)
                      +....||||...+..-+.+| + |           .||..|....-+.  ...||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVVIPCCGN-----------SYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEECSSSCC-----------EECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCCcCCChHHhCCeEcCCCCC-----------HHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            34567999999999988898 5 8           9999997655432  3689999997544

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.49  E-value=0.0023  Score=48.52  Aligned_cols=52  Identities=12%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             CCCCCCCCccccce---eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccccccc
Q 010335          362 GSIPCPLCRHGIVS---FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVAL  424 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~---~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~  424 (513)
                      ....||||...+..   ++.+|+ |           .||..|....-+....||+||.+|.......
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H-----------~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   69 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPCKH-----------AFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS   69 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETTTE-----------EEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred             CCCCCcCCCcccCCCCcEEEcCCCC-----------EecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence            34569999988753   444477 7           8999997665444569999999997754433

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.48  E-value=0.0033  Score=48.76  Aligned_cols=48  Identities=15%  Similarity=0.432  Sum_probs=38.1

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC------CCCCCCCCchhhccc
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD------AECESPACAPEIRKN  420 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~------~~~~~~~~~~~~~~~  420 (513)
                      ....||||...+..-+.+|+ |           .||..|....-+      ....||+||.++...
T Consensus        18 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           18 EEVTCPICLELLKEPVSADCNH-----------SFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             TTTSCTTTCSCCSSCEECTTSC-----------CBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             cCCCCcCCChhhCcceeCCCCC-----------HHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            34579999999888778888 8           899999765322      267999999998765

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=95.45  E-value=0.0037  Score=50.37  Aligned_cols=55  Identities=9%  Similarity=-0.031  Sum_probs=43.6

Q ss_pred             ccccchhhhcccceEEeeCCC-cccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCC
Q 010335          316 DADTCAVCLERACTVAAEGCR-HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  382 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cg-h~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  382 (513)
                      +.-.|.||++-..+-+..+|| |.+|..|........            ..||+||..+..-..+|..
T Consensus        21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~------------~~cP~~~~~l~~~~L~pn~   76 (98)
T 1wgm_A           21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD------------QTDPFNRSPLTMDQIRPNT   76 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS------------CBCTTTCSBCCTTTSEECH
T ss_pred             HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC------------CCCCCCCCCCChhhceEcH
Confidence            467899999999999999999 999999998875431            1599999887654445553

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=95.44  E-value=0.0028  Score=47.28  Aligned_cols=48  Identities=17%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             CCCCCCCCccccc---eeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          362 GSIPCPLCRHGIV---SFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~---~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      ....||||...+.   ..+.+|+ |           .||..|.....+....||+||.+|...
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~C~H-----------~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLPCMH-----------LFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECTTSC-----------EEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCeeCCccccCCCcEEEeCCCC-----------HHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            3456999988773   5677777 8           899999765544456799999988653

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=95.43  E-value=0.0055  Score=47.09  Aligned_cols=49  Identities=22%  Similarity=0.528  Sum_probs=36.2

Q ss_pred             CCCCCCCccccc--eeeec---CCCCccccccccccccCccccCCCCC-CCCCCCCCchhhccccc
Q 010335          363 SIPCPLCRHGIV--SFTKL---PGSPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKNRV  422 (513)
Q Consensus       363 ~~~Cp~Cr~~i~--~~~~~---~~~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~  422 (513)
                      ...||||...+.  ....+   .||           .||..|.....+ ....||.||.++..+.+
T Consensus        11 ~~~CpICle~~~~~d~~~~p~~CGH-----------~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A           11 PVECPLCMEPLEIDDINFFPCTCGY-----------QICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCBCTTTCCBCCTTTTTCCSSTTSC-----------CCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             CCcCCccCccCccccccccccCCCC-----------CcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            446999999773  23444   348           899999766543 46799999999988654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=95.33  E-value=0.0032  Score=48.19  Aligned_cols=50  Identities=12%  Similarity=0.121  Sum_probs=40.0

Q ss_pred             CCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhccc
Q 010335          360 PPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKN  420 (513)
Q Consensus       360 ~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~  420 (513)
                      .+....||||...+..-+.+|+ |           .||..|....-+. ...||+||.++...
T Consensus         5 ~~~~~~C~IC~~~~~~Pv~~~CgH-----------~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDPVIVSTGQ-----------TYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTE-----------EEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CcccCCCCCccccccCCEEcCCCC-----------eecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            3456679999999888887887 8           8999998665544 67899999998754

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=95.33  E-value=0.0031  Score=52.49  Aligned_cols=46  Identities=30%  Similarity=0.510  Sum_probs=1.0

Q ss_pred             ccccchhhhcccc------------------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          316 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       316 ~~~~C~iC~~~~~------------------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      ..+.|.||++...                  .++..+|+|.++..|........            ..||+||...
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~------------~~CP~Cr~~~  110 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------------QVCPLDNREW  110 (117)
T ss_dssp             CC--------------------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC------------CcCCCCCCee
Confidence            4578999987643                  23446999999999997775442            2599999874

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=95.30  E-value=0.0067  Score=50.29  Aligned_cols=45  Identities=27%  Similarity=0.592  Sum_probs=38.3

Q ss_pred             CCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhcc
Q 010335          364 IPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRK  419 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~  419 (513)
                      ..||||...+..-+.+|+ |           .||..|.....+. ...||+||.++..
T Consensus        16 ~~C~iC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           16 CQCGICMEILVEPVTLPCNH-----------TLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HBCTTTCSBCSSCEECTTSC-----------EECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCccCCcccCceeEcCCCC-----------HHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            459999999998888888 8           8999998877654 6799999999864

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.23  E-value=0.012  Score=45.40  Aligned_cols=57  Identities=21%  Similarity=0.437  Sum_probs=40.1

Q ss_pred             Cccccccchhhhccc--ceEEeeCCC-----cccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          313 SSDDADTCAVCLERA--CTVAAEGCR-----HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       313 s~~~~~~C~iC~~~~--~~v~~~~Cg-----h~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      .....+.|.||++..  ......||+     |.+...|.........          ...||+||..+..-.++
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~----------~~~CplCr~~~~~~~~~   74 (80)
T 2d8s_A           11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD----------TRCCELCKYEFIMETKL   74 (80)
T ss_dssp             CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC----------CSBCSSSCCBCCCCCCS
T ss_pred             CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC----------CCCCCCCCCeeecCccc
Confidence            345678999999653  223457996     9999999999876532          12599999887644443

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.23  E-value=0.0042  Score=45.74  Aligned_cols=48  Identities=21%  Similarity=0.420  Sum_probs=34.6

Q ss_pred             CCCCCCcc-cccee----eecCC-CCccccccccccccCccccCCC-CCCCCCCCCCchhhccccc
Q 010335          364 IPCPLCRH-GIVSF----TKLPG-SPVKDIKQPLSLGLCTPCMLHT-RDAECESPACAPEIRKNRV  422 (513)
Q Consensus       364 ~~Cp~Cr~-~i~~~----~~~~~-~~~~~~~~~~~~~~c~~c~~~~-~~~~~~~~~~~~~~~~~~~  422 (513)
                      ..||||.. ....-    +.+++ |           .||..|.... .+....||+||.++.++.+
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   58 (65)
T 1g25_A            4 QGCPRCKTTKYRNPSLKLMVNVCGH-----------TLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCC-----------CEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CcCCcCCCCccCCCccCeecCCCCC-----------HhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence            35999998 44332    34555 8           8999998665 3345689999999987654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.15  E-value=0.012  Score=48.82  Aligned_cols=43  Identities=16%  Similarity=0.337  Sum_probs=36.1

Q ss_pred             CCCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335          364 IPCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK  419 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~  419 (513)
                      ..||||...+..-+.+ |+ |           .||..|....-+  ..||+||.++..
T Consensus        23 ~~C~IC~~~~~~pv~~~~CgH-----------~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           23 LRCSRCTNILREPVCLGGCEH-----------IFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSC-----------CBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             CCCCCCChHhhCccEeCCCCC-----------HHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            4699999999988888 66 8           999999766654  789999999854

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=95.09  E-value=0.002  Score=51.23  Aligned_cols=46  Identities=24%  Similarity=0.455  Sum_probs=36.8

Q ss_pred             CCCCCCCccccce---eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335          363 SIPCPLCRHGIVS---FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK  419 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~---~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~  419 (513)
                      ...||||...+..   .+.+|+ |           .||..|....-+....||+||.++..
T Consensus        40 ~~~C~IC~~~~~~~~~~~~l~C~H-----------~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           40 EMCCPICCSEYVKGDVATELPCHH-----------YFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             CSEETTTTEECCTTCEEEEETTTE-----------EEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCcccChhhcCCCcEEecCCCC-----------hHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            3459999988776   777888 7           89999987665566799999988754

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=94.94  E-value=0.0037  Score=52.65  Aligned_cols=45  Identities=16%  Similarity=0.408  Sum_probs=37.0

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCCCC-CCCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~  420 (513)
                      .||||...+..-+.+|+ |           .||..|....-+ ....||+||.++..+
T Consensus        54 ~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  100 (124)
T 3fl2_A           54 QCICCQELVFRPITTVCQH-----------NVCKDCLDRSFRAQVFSCPACRYDLGRS  100 (124)
T ss_dssp             BCTTTSSBCSSEEECTTSC-----------EEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCCcCChHHcCcEEeeCCC-----------cccHHHHHHHHhHCcCCCCCCCccCCCC
Confidence            49999999998888888 8           899999765543 345999999999763

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=94.78  E-value=0.005  Score=49.56  Aligned_cols=46  Identities=13%  Similarity=0.386  Sum_probs=37.2

Q ss_pred             CCCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          364 IPCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      ..||||...+..-+.+ |+ |           .||..|....-+....||+||.++...
T Consensus        23 ~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   70 (99)
T 2y43_A           23 LRCGICFEYFNIAMIIPQCSH-----------NYCSLCIRKFLSYKTQCPTCCVTVTEP   70 (99)
T ss_dssp             TBCTTTCSBCSSEEECTTTCC-----------EEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             CCcccCChhhCCcCEECCCCC-----------HhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence            3599999998887777 56 8           899999866555567999999988763

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.76  E-value=0.0056  Score=50.37  Aligned_cols=45  Identities=27%  Similarity=0.551  Sum_probs=35.7

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCCCC---CCCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD---AECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~---~~~~~~~~~~~~~~~  420 (513)
                      .||||...+..-+.+|+ |           .||..|....-+   ....||+||.++..+
T Consensus        23 ~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           23 ECPICLELIKEPVSTKCDH-----------IFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             SCSSSCCCCSSCCBCTTSC-----------CCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCcccChhhcCeEECCCCC-----------HHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            59999999988777888 8           899999754432   235899999988764

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=94.71  E-value=0.0049  Score=50.51  Aligned_cols=46  Identities=20%  Similarity=0.537  Sum_probs=38.3

Q ss_pred             CCCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          364 IPCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      ..||||...+..-+.+ |+ |           .||..|....-+....||+||.++...
T Consensus        16 ~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           16 LMCVLCGGYFIDATTIIECLH-----------SFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             TBCTTTSSBCSSEEEETTTCC-----------EEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCCccCChHHhCcCEeCCCCC-----------hhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            3599999999888887 77 8           999999876655568999999998764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=94.70  E-value=0.0051  Score=61.80  Aligned_cols=52  Identities=21%  Similarity=0.422  Sum_probs=42.9

Q ss_pred             CCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC-CCCCCCCCchhhccccccccc
Q 010335          364 IPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKNRVALVS  426 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~~~~~  426 (513)
                      ..||||.......+.+|| |           .+|..|.....+ ....||+||.++....+..+.
T Consensus       333 ~~C~ICle~~~~pv~lpCGH-----------~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~  386 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGH-----------LMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD  386 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCC-----------EECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred             CCCCccCcCCCCeEEeCCCC-----------hhhHHHHHHHHhcCCCCCCCCCCccCCceeEecC
Confidence            369999999999999999 8           899999865544 467999999999988766554

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=94.62  E-value=0.0038  Score=50.46  Aligned_cols=46  Identities=13%  Similarity=0.327  Sum_probs=37.3

Q ss_pred             CCCCCccccceeee-cCC-CCccccccccccccCccccCCCCCCC-CCCCCCchhhcccc
Q 010335          365 PCPLCRHGIVSFTK-LPG-SPVKDIKQPLSLGLCTPCMLHTRDAE-CESPACAPEIRKNR  421 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~-~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~-~~~~~~~~~~~~~~  421 (513)
                      .||||...+..-+. +++ |           .||..|....-+.. ..||.||.++....
T Consensus        24 ~C~IC~~~~~~p~~~~~CgH-----------~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (100)
T 3lrq_A           24 RCFICMEKLRDARLCPHCSK-----------LCCFSCIRRWLTEQRAQCPHCRAPLQLRE   72 (100)
T ss_dssp             BCTTTCSBCSSEEECTTTCC-----------EEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCccCCccccCccccCCCCC-----------hhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence            59999999998888 777 8           89999976554433 69999999987653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.51  E-value=0.012  Score=47.00  Aligned_cols=62  Identities=16%  Similarity=0.274  Sum_probs=44.2

Q ss_pred             cccccchhhhcccceEEeeC-CCcccchhhHhHhhccCCCCCCCCCCCCCCCCCC--Cccc-cceeeecCCC
Q 010335          315 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHG-IVSFTKLPGS  382 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~-Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~--Cr~~-i~~~~~~~~~  382 (513)
                      ...-.|.||++-..+-+..+ |||.+|..|...+......      ..+...||+  |+.. +..-...|..
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~------~~~~~~CP~tgc~~~~l~~~~L~pn~   70 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQK------RKKKAYCPQIGCSHTDIRKSDLIQDE   70 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHT------TTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccC------cCCCCCCCcCcCcccccCHhhCcCCH
Confidence            45578999999999888886 9999999999888654210      002336999  9876 5544455554

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=94.41  E-value=0.0096  Score=53.36  Aligned_cols=59  Identities=10%  Similarity=-0.042  Sum_probs=46.2

Q ss_pred             cccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCc
Q 010335          315 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  384 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~  384 (513)
                      ...-.|.||++-..+-+..+|||.+|..|........          +. .||+|+..+..-..+|...+
T Consensus       104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~----------~~-tcP~t~~~l~~~~L~pN~~L  162 (179)
T 2f42_A          104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GH-FDPVTRSPLTQDQLIPNLAM  162 (179)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CS-BCTTTCCBCCGGGCEECHHH
T ss_pred             cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC----------CC-CCCCCcCCCChhhCcchHHH
Confidence            4567899999999999889999999999998886542          11 49999988776556666433

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.35  E-value=0.0081  Score=46.46  Aligned_cols=27  Identities=15%  Similarity=0.250  Sum_probs=22.1

Q ss_pred             ccCccccCCCCCCCCCCCCCchhhccc
Q 010335          394 GLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       394 ~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .|+..|...--+....||+||.++...
T Consensus        51 ~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           51 SFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             EEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             ccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            899999876666667999999987654

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=94.27  E-value=0.0058  Score=53.37  Aligned_cols=45  Identities=20%  Similarity=0.476  Sum_probs=37.2

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~  420 (513)
                      .||||...+..-+.+|+ +           .||..|....-+. ...||+||.++...
T Consensus        80 ~C~IC~~~~~~pv~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           80 MCVCCQELVYQPVTTECFH-----------NVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             BCTTTSSBCSSEEECTTSC-----------EEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             EeecCChhhcCCEEcCCCC-----------chhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            49999999998888998 8           8999997655443 34899999998865

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.13  E-value=0.0033  Score=47.78  Aligned_cols=46  Identities=20%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             CCCCCCCccccce---eeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcc
Q 010335          363 SIPCPLCRHGIVS---FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRK  419 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~---~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~  419 (513)
                      ...||||...+..   ++.+|+ |           .||..|....-+....||+||.++..
T Consensus        23 ~~~C~IC~~~~~~~~~~~~l~C~H-----------~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           23 QTLCVVCMCDFESRQLLRVLPCNH-----------EFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             CCEETTTTEECCBTCEEEEETTTE-----------EEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCeECCcccCCCCeEEEECCCC-----------HhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            3469999977654   467777 7           89999976654456789999988753

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.88  E-value=0.029  Score=39.79  Aligned_cols=41  Identities=15%  Similarity=0.457  Sum_probs=32.7

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCC---CCCCCCCCCC
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHT---RDAECESPAC  413 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~---~~~~~~~~~~  413 (513)
                      ....||||...+..-+.+|+ |           .||..|....   .+....||+|
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEPVIIECGH-----------NFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSCCCCSSCC-----------CCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCccEeCCCCC-----------ccCHHHHHHHHHhcCCCCCCCCC
Confidence            45579999999988888888 8           8999998665   3356789887

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=93.84  E-value=0.0073  Score=47.79  Aligned_cols=47  Identities=19%  Similarity=0.506  Sum_probs=36.9

Q ss_pred             CCCCCCCCCCccccceeeecC-C-CCccccccccccccCccccCCCCC--CCCCCCCCchhh
Q 010335          360 PPGSIPCPLCRHGIVSFTKLP-G-SPVKDIKQPLSLGLCTPCMLHTRD--AECESPACAPEI  417 (513)
Q Consensus       360 ~~~~~~Cp~Cr~~i~~~~~~~-~-~~~~~~~~~~~~~~c~~c~~~~~~--~~~~~~~~~~~~  417 (513)
                      .+....||||...+..-+.+| + |           .||..|....-.  ....||+||.++
T Consensus        10 ~~~~~~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDAVVIPCCGN-----------SYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCTTTEETTTTEECSSCEECTTTCC-----------EECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CCcCCCCCCCChhhcCceECCCCCC-----------HHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            345567999999999888888 4 8           899999765432  236999999986

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=93.80  E-value=0.011  Score=48.88  Aligned_cols=47  Identities=15%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             CCCCCCcccccee------------------eecCC-CCccccccccccccCccccCCCC-----CCCCCCCCCchhhcc
Q 010335          364 IPCPLCRHGIVSF------------------TKLPG-SPVKDIKQPLSLGLCTPCMLHTR-----DAECESPACAPEIRK  419 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~------------------~~~~~-~~~~~~~~~~~~~~c~~c~~~~~-----~~~~~~~~~~~~~~~  419 (513)
                      ..||||+..+..-                  +.+|+ |           .||..|....-     +....||+||.++..
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H-----------~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSH-----------AFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCC-----------EECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCC-----------cccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            3699999887432                  24555 7           89999975443     456799999999987


Q ss_pred             cc
Q 010335          420 NR  421 (513)
Q Consensus       420 ~~  421 (513)
                      ..
T Consensus        95 ~~   96 (114)
T 1v87_A           95 KT   96 (114)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=93.54  E-value=0.009  Score=52.95  Aligned_cols=44  Identities=18%  Similarity=0.542  Sum_probs=35.7

Q ss_pred             CCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhcc
Q 010335          365 PCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRK  419 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~  419 (513)
                      .||||...+..-+.+ |+ |           .||..|....-+. ...||+||.++..
T Consensus        56 ~C~IC~~~~~~p~~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           56 MCPICLDMLKNTMTTKECLH-----------RFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             BCTTTSSBCSSEEEETTTCC-----------EEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCcccChHhhCcCEeCCCCC-----------hhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            599999999988776 66 8           9999997655443 6789999999854

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=93.42  E-value=0.0099  Score=49.29  Aligned_cols=47  Identities=17%  Similarity=0.414  Sum_probs=38.0

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhccccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKNRV  422 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~~~  422 (513)
                      .||||...+..-+.+|+ +           .||..|....-+. ...||+||.++....+
T Consensus        25 ~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   73 (116)
T 1rmd_A           25 SCQICEHILADPVETSCKH-----------LFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (116)
T ss_dssp             BCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCcHhcCcEEcCCCC-----------cccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence            59999999998888888 8           8999997654432 5689999999887543

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=93.08  E-value=0.014  Score=46.38  Aligned_cols=53  Identities=21%  Similarity=0.439  Sum_probs=34.6

Q ss_pred             ccccchhhhcccceE---EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCC--Cccc
Q 010335          316 DADTCAVCLERACTV---AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHG  372 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v---~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~--Cr~~  372 (513)
                      ....|.||++.....   ...+|||.+|..|..........    .+....+.||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~----~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK----EGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH----HCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh----cCCcccccCccccCCCC
Confidence            356799999865432   33489999999998777543210    01112357999  9976

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=93.00  E-value=0.0095  Score=49.64  Aligned_cols=48  Identities=17%  Similarity=0.490  Sum_probs=38.0

Q ss_pred             CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCC-CCCCCCchhhcccc
Q 010335          363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAE-CESPACAPEIRKNR  421 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~-~~~~~~~~~~~~~~  421 (513)
                      ...||||...+..-+.+|+ +           .||..|....-+.. ..||+||.++....
T Consensus        18 ~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   67 (118)
T 3hct_A           18 KYECPICLMALREAVQTPCGH-----------RFCKACIIKSIRDAGHKCPVDNEILLENQ   67 (118)
T ss_dssp             GGBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCcCChhhcCeEECCcCC-----------hhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence            4469999999988888888 8           89999976544332 39999999998754

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=92.83  E-value=0.079  Score=50.04  Aligned_cols=59  Identities=12%  Similarity=0.127  Sum_probs=44.0

Q ss_pred             ccccccchhhhcccceEEe-eCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCC--CccccceeeecCCC
Q 010335          314 SDDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHGIVSFTKLPGS  382 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~-~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~--Cr~~i~~~~~~~~~  382 (513)
                      ....-.|.||++...+-+. ..|||.+|..|...+....          +...||+  ||..+..--..|..
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~----------~~~~CPvtGCr~~l~~~dL~pN~  239 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY----------TTRDCPQAACSQVVSMRDFVRDP  239 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC----------SCEECSGGGCSCEECGGGEEECH
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC----------CCCCCCcccccCcCchhhCCcCH
Confidence            4456789999999888876 4999999999998886431          2236999  99977654445543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=92.57  E-value=0.019  Score=45.58  Aligned_cols=57  Identities=18%  Similarity=0.459  Sum_probs=46.7

Q ss_pred             CCCCCcccccee-eecCC-CCccccccccccccCccccCCCC-CCCCCCCCCchhhcccccccccCCcccc
Q 010335          365 PCPLCRHGIVSF-TKLPG-SPVKDIKQPLSLGLCTPCMLHTR-DAECESPACAPEIRKNRVALVSSDMLCP  432 (513)
Q Consensus       365 ~Cp~Cr~~i~~~-~~~~~-~~~~~~~~~~~~~~c~~c~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (513)
                      .|+.|.-+|... +-+|+ +           .||..|+.... +.++.||.|+.+|.+=-..++++-..|+
T Consensus         3 fC~~C~~Pi~iygRmIPCkH-----------vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~~if~C~   62 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKH-----------VFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCS   62 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCC-----------EEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGGGCCCCC
T ss_pred             ecCccCCCeEEEeeeccccc-----------cHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccCCEEECC
Confidence            499999998876 77899 8           99999987765 4689999999999997666777666666

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.03  E-value=0.032  Score=40.48  Aligned_cols=41  Identities=17%  Similarity=0.542  Sum_probs=32.5

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC---CCCCCCCC
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD---AECESPAC  413 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~---~~~~~~~~  413 (513)
                      ....||||+..+..-+.+|+ |           .||..|.....+   ....||+|
T Consensus        19 ~~~~C~IC~~~~~~p~~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQKPVTIDCGH-----------NFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCSSCEECTTSS-----------EECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhCCeEEeCCCC-----------cchHHHHHHHHHcCCCCCcCcCC
Confidence            45579999999998888888 8           899999765533   45589987

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=91.28  E-value=0.038  Score=45.86  Aligned_cols=25  Identities=12%  Similarity=0.085  Sum_probs=0.0

Q ss_pred             ccCccccCCCCCCCCCCCCCchhhc
Q 010335          394 GLCTPCMLHTRDAECESPACAPEIR  418 (513)
Q Consensus       394 ~~c~~c~~~~~~~~~~~~~~~~~~~  418 (513)
                      .|+..|...--+....||+||.++.
T Consensus        87 ~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           87 AFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             -------------------------
T ss_pred             eEcHHHHHHHHHcCCcCCCCCCeee
Confidence            8999998777667789999999864

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=91.11  E-value=0.038  Score=45.03  Aligned_cols=25  Identities=12%  Similarity=0.085  Sum_probs=20.3

Q ss_pred             ccCccccCCCCCCCCCCCCCchhhc
Q 010335          394 GLCTPCMLHTRDAECESPACAPEIR  418 (513)
Q Consensus       394 ~~c~~c~~~~~~~~~~~~~~~~~~~  418 (513)
                      .|+..|...--.....||+||.++.
T Consensus        76 ~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           76 AFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             EEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             EECHHHHHHHHHcCCcCcCCCCcce
Confidence            8999998766556789999999864

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.13  E-value=0.23  Score=37.47  Aligned_cols=51  Identities=20%  Similarity=0.447  Sum_probs=36.9

Q ss_pred             ccccccchhhhcccc-eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          314 SDDADTCAVCLERAC-TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~-~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .+..+.|.||.+... ......|+|.+-..|....-.+..          ...||+||....
T Consensus        12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~----------~~~CP~Cr~~w~   63 (74)
T 2ct0_A           12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA----------EPRCPHCNDYWP   63 (74)
T ss_dssp             SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS----------SCCCTTTCSCCC
T ss_pred             cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC----------CCCCCCCcCcCC
Confidence            456789999997654 234558999999999988865431          135999997754

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=89.45  E-value=0.097  Score=42.08  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          359 GPPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       359 ~~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      ..|..-.||||..-...=+.+|+ +           .||..|....-+....||+||.++...
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~~~cGh-----------tf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVRLPSGT-----------IMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEEETTTE-----------EEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             cCcHhhCCcCccCcccCCeECCCCC-----------EEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            34556679999998888888887 7           899999876655567999999987653

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=89.02  E-value=0.033  Score=47.96  Aligned_cols=44  Identities=18%  Similarity=0.340  Sum_probs=35.5

Q ss_pred             CCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhh
Q 010335          363 SIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEI  417 (513)
Q Consensus       363 ~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~  417 (513)
                      ...||||...+..-+.+++ +           .||..|....-+. ...||.||.++
T Consensus        31 ~~~C~IC~~~~~~pv~~~CgH-----------~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           31 KYLCSACRNVLRRPFQAQCGH-----------RYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GGBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CcCCCCCChhhcCcEECCCCC-----------ccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            3469999998888777887 8           9999998776443 35899999986

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=88.03  E-value=0.09  Score=40.85  Aligned_cols=50  Identities=14%  Similarity=0.167  Sum_probs=39.3

Q ss_pred             CCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          360 PPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       360 ~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .|..-.||||..-...=+.+|+ +           .||..|....-+....||+||.++...
T Consensus        11 ~p~~~~CpI~~~~m~dPV~~~cGh-----------tf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDPVRLPSGT-----------VMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CchheECcccCchhcCCeECCCCC-----------EECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            4556679999999888888887 7           899999765544467899999887654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=86.92  E-value=0.23  Score=39.72  Aligned_cols=51  Identities=8%  Similarity=0.047  Sum_probs=39.4

Q ss_pred             CCCCCCCCCCCccccceeeecCC--CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          359 GPPGSIPCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       359 ~~~~~~~Cp~Cr~~i~~~~~~~~--~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      ..|..-.||||..-...=+.+|+  +           .||..|....-+....||+||.++...
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~cG~h-----------tf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLPSSRV-----------TVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCC-----------EEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cCcHhcCCcCccccccCCeECCCCCe-----------EECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            34556679999988888777774  7           899999866655567899999888754

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=85.88  E-value=0.087  Score=46.67  Aligned_cols=49  Identities=16%  Similarity=0.478  Sum_probs=38.0

Q ss_pred             CCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhcccc
Q 010335          362 GSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKNR  421 (513)
Q Consensus       362 ~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~~  421 (513)
                      ....||||...+..-+.+++ +           .||..|....-+. ...||+||.++..+.
T Consensus        17 ~~~~C~IC~~~~~~pv~~~CgH-----------~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   67 (170)
T 3hcs_A           17 SKYECPICLMALREAVQTPCGH-----------RFCKACIIKSIRDAGHKCPVDNEILLENQ   67 (170)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCChhhcCcEECCCCC-----------HHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence            34569999999888777887 8           8999997655332 349999999988753

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=85.49  E-value=0.41  Score=34.43  Aligned_cols=49  Identities=16%  Similarity=0.392  Sum_probs=34.1

Q ss_pred             cccccchhhhcccceEEeeCCCc-----ccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          315 DDADTCAVCLERACTVAAEGCRH-----ELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~v~~~~Cgh-----~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      ++...|.||++........||..     .+-..|.......+.          ...||+|+..+
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~----------~~~C~~C~~~~   57 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR----------NTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT----------CSBCTTTCCBC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC----------CCccCCCCCee
Confidence            45678999997655445678653     467788888875421          23599999765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=85.10  E-value=0.2  Score=47.86  Aligned_cols=50  Identities=6%  Similarity=-0.056  Sum_probs=37.6

Q ss_pred             CCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhccc
Q 010335          360 PPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKN  420 (513)
Q Consensus       360 ~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~  420 (513)
                      .|..-.||||......=+.+|+ +           .||..|....-+. ...||+||.++...
T Consensus       205 ~~~~~~c~i~~~~~~dPv~~~~gh-----------~f~~~~i~~~~~~~~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCITPSGI-----------TYDRKDIEEHLQRVGHFNPVTRSPLTQE  256 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCC-----------EEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CCcccCCcCcCCHhcCCeECCCCC-----------EECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence            3455579999999888888888 8           8999997644332 23499999988654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.84  E-value=0.39  Score=36.78  Aligned_cols=59  Identities=14%  Similarity=0.088  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCccccc--eeeecCCCCccccccccccccCccccCCCCCC--CCCCCCCchhhccc
Q 010335          357 MVGPPGSIPCPLCRHGIV--SFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDA--ECESPACAPEIRKN  420 (513)
Q Consensus       357 ~~~~~~~~~Cp~Cr~~i~--~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~--~~~~~~~~~~~~~~  420 (513)
                      +..+.....|+||.....  .-+.+|+.--     ...-.|...|...--+.  ...||+||.++.-.
T Consensus         9 s~~~~~~~~C~IC~~~~~~~~~l~~pC~C~-----Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A            9 SITPSSQDICRICHCEGDDESPLITPCHCT-----GSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CCCCTTSCCCSSSCCCCCSSSCEECSSSCC-----SSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCCCCeEcCccccCCCeeEeccccC-----CcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            344445567999997652  2234565100     00015666675443332  25899999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	513
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-38
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-26
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-25
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-22
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-17
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-14
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-12
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.002
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-06

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (357), Expect = 5e-38
 Identities = 66/226 (29%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
           PLH A+  GH  IV  LL+ GA  N  N   +T L  A R GH EV + LL  +  V   
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
                +T LH AA  GH   ++L++ +                       V++       
Sbjct: 63  AK-DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
                     G T LH+AA  G     +LLL+  A+ +A   +          G TPLH 
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN----------GLTPLHV 171

Query: 228 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           A    NL   ++LL RG S  S   NG+ PL +A    +  +   L
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 2e-29
 Identities = 67/292 (22%), Positives = 104/292 (35%), Gaps = 63/292 (21%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  AA+ G    A++LL+ +         G   +PLH A    + +IV LLL  G   +S
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNG--LTPLHVAVHHNNLDIVKLLLPRGGSPHS 193

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
             + G T L  A +    EV ++LL +  +        G T LH AA  GH   + L+++
Sbjct: 194 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVALLLS 252

Query: 134 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 193
                                                 N     G+T LH+ A  G+   
Sbjct: 253 KQ---------------------------------ANGNLGNKSGLTPLHLVAQEGHVPV 279

Query: 194 VQLLLDLHANVSAVTFHYGTSMDLIGA-----------------------GSTPLHFAAC 230
             +L+     V A T    T + +                          G +PLH AA 
Sbjct: 280 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 339

Query: 231 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH----WLEPLLAPSSD 278
            G+     +LL  GAS   ++ +G  PL +A+  G       L+ +   +S 
Sbjct: 340 QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF 391

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 5e-28
 Identities = 65/258 (25%), Positives = 98/258 (37%), Gaps = 17/258 (6%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A+  G     K LL         +      +PLH AA  GH E+   LL+N A VN+
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 74  RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 133
           +    QT L  A R GH  +V+ LL    N   A           A        + L+  
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 134 DFVPSVPFEVMNTQIEG--DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
           +   +   +   T +      G     +   ++ A     N A   G+T LH+A  +   
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA---HPNAAGKNGLTPLHVAVHHNNL 178

Query: 192 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 251
           D V+LLL    +  +  ++          G TPLH AA    ++  + LL  G S  + +
Sbjct: 179 DIVKLLLPRGGSPHSPAWN----------GYTPLHIAAKQNQVEVARSLLQYGGSANAES 228

Query: 252 CNGWLPLDVARMWGRHWL 269
             G  PL +A   G   +
Sbjct: 229 VQGVTPLHLAAQEGHAEM 246

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 4e-19
 Identities = 51/210 (24%), Positives = 74/210 (35%), Gaps = 57/210 (27%)

Query: 80  TALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 139
           T L  A   GH  +V+ LL    +   ++     T LH AA  GH    + +        
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYL-------- 52

Query: 140 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 199
                             +++K         VN  A    T LH AA  G+ + V+LLL+
Sbjct: 53  ------------------LQNKAK-------VNAKAKDDQTPLHCAARIGHTNMVKLLLE 87

Query: 200 LHANVSAVTFHYGTSMD-----------------------LIGAGSTPLHFAACGGNLKC 236
            +AN +  T    T +                        +   G TPLH AA  G ++ 
Sbjct: 88  NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 147

Query: 237 CQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
            ++LL R A   +   NG  PL VA     
Sbjct: 148 AELLLERDAHPNAAGKNGLTPLHVAVHHNN 177

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 4e-17
 Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 40/208 (19%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
             +  G +     L  AA++G      +LL         +  G   +PLH  A +GH  +
Sbjct: 226 AESVQGVTP----LHLAAQEGHAEMVALLLSKQANGNLGNKSG--LTPLHLVAQEGHVPV 279

Query: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
             +L+++G  V++    G T L  A  YG+ ++V+ LL  + +V       G + LH AA
Sbjct: 280 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAA 338

Query: 121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 180
             GH   + L++                          K+           N+ +  G T
Sbjct: 339 QQGHTDIVTLLL--------------------------KNGAS-------PNEVSSDGTT 365

Query: 181 ALHMAALNGYFDCVQLLLDLHANVSAVT 208
            L +A   GY     +L  +    S V 
Sbjct: 366 PLAIAKRLGYISVTDVLKVVTDETSFVL 393

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 1e-16
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 179 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 238
           +T LH+A+  G+   V+ LL   A+ +                 TPLH AA  G+ +  +
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVK----------VETPLHMAARAGHTEVAK 50

Query: 239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
            LL   A   +   +   PL  A   G   +  LL
Sbjct: 51  YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 1e-26
 Identities = 48/261 (18%), Positives = 81/261 (31%), Gaps = 39/261 (14%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSR-NYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           N  L  A      ++V  LLE GA+VN +    G T L  A +    ++V+ LL    + 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI---------EGDRGDG 155
                      L  A           +      +       T           +  +   
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 156 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTS 214
               +   +    +   +   GG TAL  AA  G+ + +++LLD   A+V+A       +
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 215 M-----------------DLIGAGS----------TPLHFAACGGNLKCCQVLLSR-GAS 246
           +                  L+  G+          TPL  A    +L   Q LL +    
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245

Query: 247 RMSLNCNGWLPLDVARMWGRH 267
               + +G   L +A      
Sbjct: 246 INDTDSDGKTALLLAVELKLK 266

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (243), Expect = 2e-23
 Identities = 65/281 (23%), Positives = 94/281 (33%), Gaps = 59/281 (20%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL-------- 65
           L+ A ++ D    + LL+    +      GG  +PLH A      +IV LLL        
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGG-WTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 66  -------------------------ENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF 100
                                      GADVN  ++ G TA M+A  YG  + ++ L   
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 101 RCNVTRADY---------LSGRTALHFAAVNGHVRCIRLVVADF---VPSVPFEVMNTQI 148
             NV                G TAL  AA  GHV  +++++ +    V +      N  I
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187

Query: 149 EGDRGDGSSVKSKCDQSALSK--FVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVS 205
                   S         L     VN   + G T L +A    +   VQ LL+     ++
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247

Query: 206 AVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 246
                          G T L  A      K  ++L  RGAS
Sbjct: 248 DTDSD----------GKTALLLAVELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 2e-21
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 1/192 (0%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP 137
               L++A +    ++VQ LL    NV   +   G T LH A        + L++     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 138 SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 197
            V  +              SVK      +    VN+    G TA   AA+ G    ++ L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 198 LDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWL 256
               ANV+           L   G+T L  AA  G+++  ++LL   GA   + +  G  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 257 PLDVARMWGRHW 268
            L  A +     
Sbjct: 185 ALIHALLSSDDS 196

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 2e-18
 Identities = 43/211 (20%), Positives = 70/211 (33%), Gaps = 38/211 (18%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
            G +    A+    V A +      A + L       +     G  + L  AA KGH E+
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 61  VALLL-ENGADVNSRNYCGQTALMQAC----RYGHWEVVQTLLLFRCNVTRADYLSGRTA 115
           + +LL E GADVN+ +  G+ AL+ A           +   LL    +V       G+T 
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTP 222

Query: 116 LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 175
           L  A    H+  ++ ++                          +   +       +N   
Sbjct: 223 LILAVEKKHLGLVQRLLE-------------------------QEHIE-------INDTD 250

Query: 176 DGGITALHMAALNGYFDCVQLLLDLHANVSA 206
             G TAL +A         +LL    A+   
Sbjct: 251 SDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 9e-13
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 46  NSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
            +PL  A  K H  +V  LLE    ++N  +  G+TAL+ A      ++ + L     + 
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

Query: 105 TRADYL 110
              D +
Sbjct: 280 DCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 174 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 233
           AA      L  A  N   D VQ LL+  ANV+      G          TPLH A     
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW---------TPLHNAVQMSR 51

Query: 234 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 268
               ++LL  GA  +    NG  P  +A + G   
Sbjct: 52  EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK 86

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 42/159 (26%)

Query: 110 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 169
           +     L  A  N  V  ++ ++                      G++V  + +      
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLE--------------------GGANVNFQEE------ 36

Query: 170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 229
                 +GG T LH A      D V+LLL   A+      +  T              AA
Sbjct: 37  ------EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF----------LLAA 80

Query: 230 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 268
             G++K  ++ LS+GA     +  G+     A ++G+  
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (263), Expect = 4e-26
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 38/223 (17%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR----YGHWEVVQTLLLFR 101
           N+PLH+  +  + E+V  L+++G++    +  G++ L++A +    Y        L    
Sbjct: 108 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
             +   D    RT LH   +   +         ++  +   ++  Q              
Sbjct: 168 PCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ-------------- 212

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH---ANVSAVTFHYGTSMDLI 218
                 ++ +    +   +  +          ++ L         ++A   +        
Sbjct: 213 ------NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN-------- 258

Query: 219 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
             G T L+ AA  GN+     LL  GA     N +G  P+D  
Sbjct: 259 --GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.9 bits (167), Expect = 2e-13
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 5/116 (4%)

Query: 8   SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
           ++      +AA+    +    ++       +  T     S  +    +  + I+  L   
Sbjct: 187 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK-ESKPNDKNGERKDSILENLDLK 245

Query: 68  ---GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120
                 +N+++  G T L  A R G+  +V  LL +  +   A+  SG   + F A
Sbjct: 246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK-SGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 16/160 (10%), Positives = 38/160 (23%), Gaps = 56/160 (35%)

Query: 46  NSPLHFAAAKGHNE-------------IVALLLENGADVNSRNYCGQTALMQACRYGHWE 92
            + LH                      +  ++ +    + S     ++            
Sbjct: 178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 237

Query: 93  VVQTLL---LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNT 146
           +++ L    +    +   D  +G T L+ AA  G++  +  ++   AD            
Sbjct: 238 ILENLDLKWIIANMLNAQDS-NGDTCLNIAARLGNISIVDALLDYGAD------------ 284

Query: 147 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 186
                                      A   G+  +   A
Sbjct: 285 ------------------------PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 156 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 215
                    +  S   ++         H++  +   +      +   N++     +G   
Sbjct: 51  IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG--- 107

Query: 216 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 268
                 +TPLH+     NL+  + L+  G++R+  +  G   L  A     ++
Sbjct: 108 ------NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 154

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  104 bits (260), Expect = 1e-25
 Identities = 60/257 (23%), Positives = 94/257 (36%), Gaps = 36/257 (14%)

Query: 44  GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCN 103
              +    A + G  E V  LLE GAD+N  N  G TAL QAC   + ++V+ L+    N
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 104 VTRADYLSGRTALHFAAVNGHVRCIRLVVADF-----------------------VPSVP 140
           + + D          A+         L+                           +    
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 141 FEVMNTQIEGDRGDGSSVKSKCDQSALSK---FVNKAADGGITALHMAALNGYFDCVQLL 197
                  IE  R +   +  +  +  L+       + A  G TALH+AA  GY + ++LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 198 LDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 257
           +    +V+   +           G TPLH AA  G  + C++L+       ++N  G   
Sbjct: 219 IQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268

Query: 258 LDVARMWGRHWLEPLLA 274
            DVA      +LE L  
Sbjct: 269 FDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 173 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 232
           K           A  +G  + V  LL+  A+++               G T LH A    
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVD----------GLTALHQACIDD 84

Query: 233 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           N+   + L+  GA+    +  GW+PL  A   G   +   L
Sbjct: 85  NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 20/69 (28%)

Query: 221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAV 280
                  A   G+ +    LL RGA     N +G   L  A +     +   L  +   +
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 281 MPRFHPSNY 289
               +    
Sbjct: 100 NQPDNEGWI 108

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  101 bits (252), Expect = 3e-24
 Identities = 37/244 (15%), Positives = 53/244 (21%), Gaps = 26/244 (10%)

Query: 46  NSPLHFAAAKGHN---EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRC 102
                 AA  G +   + + LLL +   V         A   A   GH  V+  L     
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 103 NVTRAD-YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
               A        A   AA NGH+  +  +           +        R         
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA----AVG 206

Query: 162 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD------------LHANVSAVTF 209
                +  F+         A       G       +                +N   V  
Sbjct: 207 RGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFD 266

Query: 210 HYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN-----GWLPLDVARM 263
               S  L G      L        L   + LLS    +               L +A  
Sbjct: 267 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 326

Query: 264 WGRH 267
            G  
Sbjct: 327 LGNQ 330

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 96.1 bits (238), Expect = 2e-22
 Identities = 35/247 (14%), Positives = 60/247 (24%), Gaps = 34/247 (13%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +  +    A       AA +G       L +  P                 AA  GH  +
Sbjct: 121 VIQAENYQA----FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 176

Query: 61  VALLLENGADVNS---RNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALH 117
           +  L E      +   +          A   GH  V+  LL     +          A  
Sbjct: 177 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML--------AYAEI 228

Query: 118 FAAVNGHVRCIR--LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 175
                G            + +  +      +  +G                ++K      
Sbjct: 229 HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG------------VFDLVTKSECLQG 276

Query: 176 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 235
              +  L         D ++ LL +    +           + G  +  L  A   GN  
Sbjct: 277 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA-----TIPGDANELLRLALRLGNQG 331

Query: 236 CCQVLLS 242
            C +LLS
Sbjct: 332 ACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 77.2 bits (189), Expect = 5e-16
 Identities = 28/190 (14%), Positives = 47/190 (24%), Gaps = 18/190 (9%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSP-LHFAAAKGHNEIVALLLENGADVN 72
              AA +G       L +  P  A               A  +GH+ ++  LL+    + 
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224

Query: 73  SRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
                   A +    YG   V   +                 A   +  +G      LV 
Sbjct: 225 -------YAEIHEFEYGEKYVNPFIA-----RHVNRLKEMHDAFKLSNPDGV---FDLVT 269

Query: 133 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG--GITALHMAALNGY 190
                   + + N     D      ++       +      A         L +A   G 
Sbjct: 270 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 329

Query: 191 FDCVQLLLDL 200
                LLL +
Sbjct: 330 QGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 76.5 bits (187), Expect = 7e-16
 Identities = 28/229 (12%), Positives = 45/229 (19%), Gaps = 64/229 (27%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA 107
            +     K   ++  LL    A  N       +   +                       
Sbjct: 49  HIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSE----------------- 91

Query: 108 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 167
                      AA+ G    +  +                          + S       
Sbjct: 92  ------VICFVAAITGCSSALDTLC-----------------------LLLTSDEI---- 118

Query: 168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 227
              V         A  +AA NG+   +  L +L                           
Sbjct: 119 ---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE--------NYHAFRL 167

Query: 228 AACGGNLKCCQVLLSRGA---SRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           AA  G+L     L        + M    N +     A   G H +   L
Sbjct: 168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.0 bits (152), Expect = 2e-11
 Identities = 21/159 (13%), Positives = 34/159 (21%), Gaps = 17/159 (10%)

Query: 170 FVNKAADGGITALHMAALNGYFD---CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 226
             +K          +AA+ G       + LLL     V  +                   
Sbjct: 82  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE----------NYQAFR 131

Query: 227 FAACGGNLKCCQVLLSRGASRMSLNCN--GWLPL-DVARMWGRHWLEPLL-APSSDAVMP 282
            AA  G+L     L     + +        +      A     H L  L     ++A   
Sbjct: 132 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 191

Query: 283 RFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCA 321
               + Y                 L         A+   
Sbjct: 192 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 230

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 14  LVSAARDGDFVEAKMLLDC---NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           L+    +    + + LL            +  G  N  L  A   G+    ALLL     
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-S 341

Query: 71  VNS 73
           V +
Sbjct: 342 VLA 344

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (212), Expect = 1e-19
 Identities = 45/250 (18%), Positives = 73/250 (29%), Gaps = 60/250 (24%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGAD---VNSRNYCGQTALM------------------- 83
           ++ LH A    H   +  LL   A    ++ +N  GQTAL                    
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 84  --------------QACRYGHWEVVQTLLLFRCN---------VTRADYLSGRTALHFAA 120
                          ACR         LL  R +         +T++   +  T+   AA
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 121 VNGHVRCIRLVVADFV-----PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 175
           V+                           +T +        +   +  + A +       
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 176 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 235
             G T LH+A        ++LLL   A+ +A  +           G TPL  A    N  
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG----------GRTPLGSALLRPNPI 239

Query: 236 CCQVLLSRGA 245
             ++L + GA
Sbjct: 240 LARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 5e-11
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G TALH+A ++ +   +  LL   A    +             G T LH AA  G     
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-------GQTALHLAAILGEASTV 61

Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 273
           + L + GA  +     G   L +A     H    +L
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 9e-08
 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 40/146 (27%)

Query: 112 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 171
           G TALH A ++ H   +  ++                                SA  +++
Sbjct: 9   GDTALHLAVIHQHEPFLDFLL------------------------------GFSAGHEYL 38

Query: 172 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
           +   D G TALH+AA+ G    V+ L    A V        T++          H A   
Sbjct: 39  DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL----------HLACRV 88

Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLP 257
               C  VLL    S      + +L 
Sbjct: 89  RAHTCACVLLQPRPSHPRDASDTYLT 114

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 7e-05
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 18  ARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
                    ++LL            G   +PL  A  + +  +  LL  +GA   
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGG--RTPLGSALLRPNPILARLLRAHGAPEP 252

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 81.4 bits (199), Expect = 3e-18
 Identities = 49/210 (23%), Positives = 75/210 (35%), Gaps = 11/210 (5%)

Query: 59  EIVALLLENGADVNSR-NYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALH 117
           ++++ LL  GA++N+  +  G+T+L  A R+   +  + LL    +    D         
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 118 FAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG 177
             A +       L+              T         +      D       +N A + 
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 237
           G TALH AA     + V +LL  HAN  A                TPL  AA  G+ +  
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD----------ETPLFLAAREGSYEAS 172

Query: 238 QVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
           + LL   A+R   +    LP DVA     H
Sbjct: 173 KALLDNFANREITDHMDRLPRDVASERLHH 202

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTL 97
            +PL  AA +G  E    LL+N A+    ++  +     A    H ++V+ L
Sbjct: 157 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 34/134 (25%)

Query: 64  LLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG 123
           L+   AD+N+ +  G+TAL  A    + E V  LL+   N    D     T L  AA  G
Sbjct: 109 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDD-KDETPLFLAAREG 167

Query: 124 HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 183
                + ++                           +  +                    
Sbjct: 168 SYEASKALL--------------------------DNFAN-------REITDHMDRLPRD 194

Query: 184 MAALNGYFDCVQLL 197
           +A+   + D V+LL
Sbjct: 195 VASERLHHDIVRLL 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 1e-17
 Identities = 53/252 (21%), Positives = 80/252 (31%), Gaps = 58/252 (23%)

Query: 46  NSPLHFAAAKGHNEIVA-LLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           N  +   A  G  E +   +L + +     +   +TAL  AC  GH E+V+ LL     V
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              D          A+         L+                                 
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGA----------------------------- 94

Query: 165 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA---- 220
                 VN     G T LH AA     +   +LL+  AN  A   +  T+M    A    
Sbjct: 95  -----QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 149

Query: 221 -------------------GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 261
                              G+TPLH A     ++  ++L+S+GAS    N     PL VA
Sbjct: 150 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 209

Query: 262 RMWGRHWLEPLL 273
           +      L+ ++
Sbjct: 210 KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 5e-15
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 37/172 (21%)

Query: 28  MLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR 87
            LL     +   +  G   +PLH+AA+K  +EI  +LLE GA+ +++++   TA+ +A  
Sbjct: 88  ALLGKGAQVNAVNQNG--CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 145

Query: 88  YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 147
            G+ +++  LL ++ +    D   G T LH A     V   +L+                
Sbjct: 146 KGNLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLL---------------- 188

Query: 148 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 199
                     V            +        T L +A   G    ++ +++
Sbjct: 189 ----------VSQGAS-------IYIENKEEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 5e-10
 Identities = 42/203 (20%), Positives = 68/203 (33%), Gaps = 45/203 (22%)

Query: 82  LMQACRYGHWEVVQTLLL-FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP 140
           +      G  E ++  +L  +   TR D    RTALH+A   GH   +  ++   VP   
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 141 FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 200
            +                                       LH+AA  G  + V+ LL  
Sbjct: 66  KDDAGWSP---------------------------------LHIAASAGRDEIVKALLGK 92

Query: 201 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 260
            A V+AV  +          G TPLH+AA     +   +LL  GA+  + +      +  
Sbjct: 93  GAQVNAVNQN----------GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHR 142

Query: 261 ARMWGRHWLEPLLAPSSDAVMPR 283
           A   G   +  +L     +   +
Sbjct: 143 AAAKGNLKMIHILLYYKASTNIQ 165

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.2 bits (196), Expect = 2e-17
 Identities = 42/243 (17%), Positives = 76/243 (31%), Gaps = 30/243 (12%)

Query: 46  NSPLHFAAAKGHNEIVALLLEN--------GADVNSRNYCGQTALMQACRYGHWEVVQTL 97
            + LH+ A+    E    L+ +        GADVN+ +    T LM A       +V  L
Sbjct: 34  RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 93

Query: 98  LLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM------------- 144
           +    + T  +          AA       + ++ +  +     E+              
Sbjct: 94  MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 153

Query: 145 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204
             + +         K        +   +     G TALH AA       V+ L+    + 
Sbjct: 154 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 213

Query: 205 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMW 264
                  G          TP+  AA  G ++    L+ +GAS  +++        +A+  
Sbjct: 214 KDKQDEDGK---------TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 264

Query: 265 GRH 267
             H
Sbjct: 265 NHH 267

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.9 bits (172), Expect = 2e-14
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRC 102
            +P+  AA +G  E+V  L++ GA V + +    TA   A    H  +V   +  RC
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD--IFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 46  NSPLHFAAAKGHNEIVALL-LENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
            + LH+AA   +  IV  L  E G++ + ++  G+T +M A + G  EVV  L+    +V
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRL 130
              D  +  TA   A  N H   + +
Sbjct: 248 EAVDA-TDHTARQLAQANNHHNIVDI 272

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 5e-09
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 33/132 (25%)

Query: 67  NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR 126
             A  +S  Y G+TAL  A +  +  +V+ L+  + +        G+T +  AA  G + 
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 186
            +  ++                          +           V        TA  +A 
Sbjct: 236 VVMYLI--------------------------QQGAS-------VEAVDATDHTARQLAQ 262

Query: 187 LNGYFDCVQLLL 198
            N + + V +  
Sbjct: 263 ANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 20/172 (11%)

Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
             LH  A  G +   + +     N+                  T LH+ A   + +  + 
Sbjct: 4   IKLHTEA-AGSYAITEPITRESVNIIDPRH-----------NRTVLHWIASNSSAEKSED 51

Query: 240 LL--------SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLS 291
           L+        + GA   +++C+   PL +A +  R  L   L  +               
Sbjct: 52  LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL 111

Query: 292 LPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRC 343
               +  +      +L+ST    D  +     +     VA    R ++    
Sbjct: 112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 163

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 4/113 (3%)

Query: 178 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKC 236
             T LH  A N   +  + L+   A         G  ++ +    +TPL  A      + 
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECI---AAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 237 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNY 289
              L+  GA     N +    L  A       +   +  S+            
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 142

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (190), Expect = 5e-17
 Identities = 41/216 (18%), Positives = 65/216 (30%), Gaps = 20/216 (9%)

Query: 46  NSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
           +S LH A          E++  +  + A +N +N   QT L  A      E+ + LL   
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK 161
           C+    D+                    L  +   P +   +  T   G      +    
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 162 CDQSALSKFVNKA------ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 215
                       A         G TALH+A      D V LLL   A+V+ VT+      
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ----- 177

Query: 216 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 251
                G +P        + +  Q L       + + 
Sbjct: 178 -----GYSPYQLTWGRPSTRIQQQLGQLTLENLQML 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           A+  G     ++L+     +       G  + LH A    + ++V+LLL+ GADVN   Y
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNG-RTALHLAVDLQNPDLVSLLLKCGADVNRVTY 176

Query: 77  CGQTALMQACRYGHWEVVQTLL 98
            G +            + Q L 
Sbjct: 177 QGYSPYQLTWGRPSTRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 31  DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYC-GQTALMQACRYG 89
             +      +T    ++ LH A+  G+  IV LL+  GADVN++  C G+TAL  A    
Sbjct: 97  TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 156

Query: 90  HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 132
           + ++V  LL    +V R  Y  G +           R  + + 
Sbjct: 157 NPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRIQQQLG 198

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (190), Expect = 6e-17
 Identities = 51/230 (22%), Positives = 78/230 (33%), Gaps = 20/230 (8%)

Query: 46  NSPLHFAAAKGHNEIVALLL----ENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR 101
           ++PLH A  +G+   V  L+    + G +++  N   QT L  A       VV+ L+   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMN-----TQIEGDRGDGS 156
            +    D      A H A  +    C+R ++    P             T +        
Sbjct: 64  ASPMALDRHGQTAA-HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 157 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMD 216
               +      +         G + L  A  N     VQLLL           H      
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ----------HGANVNA 172

Query: 217 LIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 266
            + +GS+ LH A+  G L   + L+  GA     NC+   PL VAR    
Sbjct: 173 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 5e-13
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 13  RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
            L+ A  +      ++LL     +      G  +S LH A+ +G   +V  L+ +GAD +
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQMYSG--SSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 73  SRNYCGQTALMQACRYGHWEVVQ 95
            +N    T LM A      ++++
Sbjct: 205 LKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 7e-10
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 30  LDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG 89
           L                SPL  A       +V LLL++GA+VN++ Y G +AL  A   G
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 188

Query: 90  HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR 129
              +V+TL+    + +  +     T L  A     +  +R
Sbjct: 189 LLPLVRTLVRSGADSSLKNC-HNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 176 DGGITALHMAALNGYFDCVQLLLDLH----ANVSAVTFHYGTSMDLIGAGSTPLHFAACG 231
           + G T LH+A + G    V  L++L       +                  TPLH A   
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL----------RQTPLHLAVIT 50

Query: 232 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 267
                 ++L++ GAS M+L+ +G     +A      
Sbjct: 51  TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 86

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 221 GSTPLHFAACGGNLKCCQVLLS----RGASRMSLNCNGWLPLDVARMWGRHW 268
           G TPLH A   GNL     L++     G      N     PL +A +     
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 54

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.6 bits (184), Expect = 4e-16
 Identities = 45/222 (20%), Positives = 66/222 (29%), Gaps = 15/222 (6%)

Query: 46  NSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           N PLH A  +     V  LL    + +  ++  G+  L  +  +   E+   LL    NV
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 164
              DY        F           +      P  P     T         +  K   + 
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 165 SAL----SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA 220
           S         V          LH AA  G    ++LL  L  +        G        
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW------- 173

Query: 221 GSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVA 261
             TPL  A   G+     +L+ + GA    ++  G    DVA
Sbjct: 174 --TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 37/235 (15%), Positives = 67/235 (28%), Gaps = 20/235 (8%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           A  + +F + + LL   P L       G   PLH++ +   +EI + LL    +VN  +Y
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNLDDY 65

Query: 77  CGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR-----CIRLV 131
              +             ++ +        + D                 +        L+
Sbjct: 66  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 125

Query: 132 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
                  +  +     +      GS    +         VN     G T L  A   G+ 
Sbjct: 126 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 185

Query: 192 DCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 245
           D   LL++ + A    V             G+     A    N +  +  L+   
Sbjct: 186 DAAVLLVEKYGAEYDLVDNK----------GAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 23  FVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD-VNSRNYCGQTA 81
           + E    L  N    +         PLH AA+ G  +++ LL   G   VN ++  G T 
Sbjct: 117 WFEVSQFLIENGASVRIKDKFN-QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 175

Query: 82  LMQACRYGHWEVVQTLLL-FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD 134
           L  A   GH +    L+  +       D   G  A   A      +     V D
Sbjct: 176 LFHALAEGHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALNEQVKKFFLNNVVD 228

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 2e-14
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 3/154 (1%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           + L  AAA+G  E +  LL+N  +VN++N  G+TAL            +   L R     
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRL--LLRGANPD 60

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
               +G   +H AA  G +  ++ ++         +               ++       
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 120

Query: 167 LSKFVNKAAD-GGITALHMAALNGYFDCVQLLLD 199
            +       +  G TA  +A L G  + V L+  
Sbjct: 121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 14/89 (15%), Positives = 28/89 (31%)

Query: 180 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 239
             L  AA  G  + +  LL  + NV+A      T++ ++  G+  +              
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 240 LLSRGASRMSLNCNGWLPLDVARMWGRHW 268
             +  A        G+L      +  +  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQAD 91

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 46  NSPLHFAAAKGHNEIVALLLENG 68
           ++    A   G NE+V+L+  NG
Sbjct: 134 DTACDLARLYGRNEVVSLMQANG 156

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.0 bits (151), Expect = 2e-12
 Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 4/154 (2%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNV 104
           L   L  AA  G ++ V +L+ NGA   +         + A           L       
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 105 TRADYLSGRTALHFAAVNGHVRCIRLVV-ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 163
            R         +  +  + ++  + L   AD       ++       +      V+    
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 164 QSALSKFVNKAADGGITALHMAALNGYFDCVQLL 197
             A    V+  +    TA  ++  NG  D  ++L
Sbjct: 122 YGA---DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 31/150 (20%)

Query: 11  GERLVSAARDGDFVEAKMLLD------------------------------CNPCLAKYS 40
           G++L+ AAR G   E ++L+                                   +++ +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 41  TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF 100
                 +PLH AA++GH  IV +LL++GADVN+++    TAL  A  + H EVV+ L+ +
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 101 RCNVTRADYLSGRTALHFAAVNGHVRCIRL 130
             +V        +TA   +  NG+     +
Sbjct: 123 GADVHTQSK-FCKTAFDISIDNGNEDLAEI 151

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 4e-12
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 4/153 (2%)

Query: 48  PLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
            L  AAA+G  + V  LL       ++ N  G+TAL           ++ L        +
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
               +                + +     V               +   ++V S     +
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124

Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLD 199
               +++    G+T L +A   G  D V +L  
Sbjct: 125 ---DLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 13  RLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAA---KGHNEIVALLL 65
            L  A +  D            D    +   +      + LH A     +    IV  L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 66  ENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV 125
           +N  +++ +   G TAL   C   + E ++ LL  + ++  A+  SG T L  A    H 
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHE 127

Query: 126 RCIRL 130
            C  L
Sbjct: 128 HCEEL 132

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 8/139 (5%)

Query: 80  TALMQACRYGHWEVVQTLLLFRCNVTRADYLS-----GRTALHFAAVN---GHVRCIRLV 131
            +L +A +      +        ++T    L+       TALH A  +     +  +  +
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 132 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 191
           V +           +          + +           +  A + G T L +A    + 
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 192 DCVQLLLDLHANVSAVTFH 210
            C +LL    +       H
Sbjct: 128 HCEELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 53/173 (30%)

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
           AD  +   +L  A     +  +    AD                    G  +  K     
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYAD--------------------GVDLTEKIP--- 37

Query: 167 LSKFVNKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA--- 220
               +    +   TALH+A  +        V  L+    N+   T    T++        
Sbjct: 38  ----LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 93

Query: 221 --------------------GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 253
                               G TPL  A    +  C ++L    + R + + +
Sbjct: 94  AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGAD 70
            +PL  A    H     LL +  + 
Sbjct: 115 ETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 9/99 (9%)

Query: 175 ADGG--ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA--- 229
           AD    + +L  A        +        +++                 T LH A    
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEP----DETALHLAVRSV 56

Query: 230 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 268
              +L     L+    +       G   L    +     
Sbjct: 57  DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 95

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 31/158 (19%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTR 106
           + L  ++ +G  ++V  ++    D +  N  G TAL  A   GH E+V+ L+ F  NV  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 107 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 166
           AD          A+ N    C  LV                           +S     A
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLV---------------------------ESGAAVFA 95

Query: 167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 204
           ++    + A             GY  C Q L  +   +
Sbjct: 96  MTYSDMQTA----ADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 7/132 (5%)

Query: 114 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK 173
             L  +++ G    ++ ++ +                +       +           VN 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 174 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 233
           A   G T LH AA        + L++  A V A+T+            +         G 
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ-------TAADKCEEMEEGY 115

Query: 234 LKCCQVLLSRGA 245
            +C Q L     
Sbjct: 116 TQCSQFLYGVQE 127

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 2e-06
 Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 1/122 (0%)

Query: 78  GQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP 137
               L  A   G  E V+ LL    N   A    GR  +    +        L++    P
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMMGSARVAELLLLHGAEP 61

Query: 138 SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 197
           +       T+   D      + +          ++     G   + +A   G+ D  + L
Sbjct: 62  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 198 LD 199
             
Sbjct: 122 RA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.98
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	97.91
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.64
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.55
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	97.54
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	97.46
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.4
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	97.36
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	96.88
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	96.87
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	96.72
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	96.7
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	96.65
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	96.62
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	96.56
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	96.52
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	96.47
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	96.26
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	95.51
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	95.47
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	95.44
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	95.42
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	94.92
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	94.61
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	93.21
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	92.51
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	91.12
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	90.68
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	89.77
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	88.98
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	87.74
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	84.68

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=287.95  Aligned_cols=221  Identities=28%  Similarity=0.332  Sum_probs=201.4

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      +...|+.++..|+++.|+.+|+.++..... .+..|+||||+|+..|+.+++++|++.+.+....+..+.++++.|+..+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~-~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcC-cCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            346789999999999999999877655333 3444599999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHH
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK  169 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (513)
                      +.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.+                                
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~-~g~tpL~~A~~~~~~e~~~~Ll~~g~d--------------------------------  128 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN--------------------------------  128 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC--------------------------------
T ss_pred             ccchhHHHhccCceeEeeCC-CCCchhhHHHHcCCHHHHHHHHHCCCC--------------------------------
Confidence            99999999999999998886 899999999999999999999987654                                


Q ss_pred             hcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCC
Q 010335          170 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  249 (513)
Q Consensus       170 ~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~  249 (513)
                       ++..+..|.||||+|+..++.+++++|++.|.+++..+..          |.||||+|+..|+.++|++|+++|+|++.
T Consensus       129 -~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~----------g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         129 -PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE----------GNTPLHLACDEERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             -CCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCC----------CCceeccccccCcHHHHHHHHHCCCCCCC
Confidence             5567788999999999999999999999999999999977          99999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          250 LNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       250 ~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      +|.+|+||||+|. .|+.+|+++|+++
T Consensus       198 ~d~~g~tpl~~A~-~~~~~i~~~Ll~~  223 (223)
T d1uoha_         198 ENKEEKTPLQVAK-GGLGLILKRMVEG  223 (223)
T ss_dssp             CCTTSCCHHHHCC-TTHHHHHHHHHCC
T ss_pred             CCCCCCCHHHHHH-CCCHHHHhcccCC
Confidence            9999999999984 6888999888764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-36  Score=291.89  Aligned_cols=225  Identities=24%  Similarity=0.248  Sum_probs=163.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHH
Q 010335           45 LNSPLHFAAAKGHNEIVALLLENGAD---VNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV  121 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~~Gad---vn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~  121 (513)
                      |+||||+||..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.++|++|+++|++++..+. +|.||||+|+.
T Consensus         9 G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~-~g~tpL~~A~~   87 (255)
T d1oy3d_           9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER-GGHTALHLACR   87 (255)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TSCCHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccccccc-ccchhhhhhhc
Confidence            37777777777777777777777766   455667777777777777777777777777777777664 77777777777


Q ss_pred             cCCHHHHHHHHHccCCCCccccchhhhccc--------------CCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHH
Q 010335          122 NGHVRCIRLVVADFVPSVPFEVMNTQIEGD--------------RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL  187 (513)
Q Consensus       122 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~  187 (513)
                      .++.+++++|+...................              ...................++.++..|.||||+|+.
T Consensus        88 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~  167 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccc
Confidence            777777777765433221110000000000              000000000001111233467789999999999999


Q ss_pred             cCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCcc
Q 010335          188 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH  267 (513)
Q Consensus       188 ~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~  267 (513)
                      +++.++|++|++.+++.+..+..         .|.||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..++.
T Consensus       168 ~~~~~~v~~Ll~~~~~~~~~~~~---------~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~  238 (255)
T d1oy3d_         168 HKDAEMVRLLRDAGADLNKPEPT---------CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP  238 (255)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             ccccccccchhcccccccccccc---------cccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            99999999999999998876533         399999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCCCCCC
Q 010335          268 WLEPLLAPSSDA  279 (513)
Q Consensus       268 ~iv~lL~~~~~~  279 (513)
                      +++++|.++++.
T Consensus       239 ~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         239 ILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999987764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=294.00  Aligned_cols=252  Identities=27%  Similarity=0.303  Sum_probs=173.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW   91 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~   91 (513)
                      ||||.||+.|++++|++||++|++++..+..  |+||||+|+..|+.++|++||++|++++.+|..|.||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~--g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVK--VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSC--CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH
Confidence            6999999999999999999999988765444  49999999999999999999999999999999999999999988877


Q ss_pred             HHHHHHH------------------------------------------------------------------hcCCCCC
Q 010335           92 EVVQTLL------------------------------------------------------------------LFRCNVT  105 (513)
Q Consensus        92 eiVk~LL------------------------------------------------------------------~~ga~~~  105 (513)
                      +++++|+                                                                  ++|++++
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7666554                                                                  4555555


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccc---hhhhcc--------------------cCCCCchhh---
Q 010335          106 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM---NTQIEG--------------------DRGDGSSVK---  159 (513)
Q Consensus       106 ~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~---~~~~~~--------------------~~~~~~~~~---  159 (513)
                      ..+. +|.+|||+|+..|+.+++++|+.++.........   ......                    .........   
T Consensus       160 ~~~~-~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  238 (408)
T d1n11a_         160 AAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA  238 (408)
T ss_dssp             CCCS-SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cCCC-cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHH
Confidence            4443 6788888888888888888888776543211000   000000                    000000000   


Q ss_pred             -hhhchhHHH------HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCC
Q 010335          160 -SKCDQSALS------KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  232 (513)
Q Consensus       160 -~~~~~~~~~------~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g  232 (513)
                       .......+.      ...+..+..|.|||+.|+..++.+++++|+++|++++..+..          +.||||+|+..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~----------~~t~L~~~~~~~  308 (408)
T d1n11a_         239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM----------GYTPLHVASHYG  308 (408)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS----------CCCHHHHHHHSS
T ss_pred             HHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccccccc----------ccccchhhcccC
Confidence             000000111      123445667888888888888888888888888888777755          566666666666


Q ss_pred             CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC
Q 010335          233 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  276 (513)
Q Consensus       233 ~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~  276 (513)
                      +.+++++|+++|++++.+|.+|.||||+|++.|+.+++++|++.
T Consensus       309 ~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~  352 (408)
T d1n11a_         309 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN  352 (408)
T ss_dssp             CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            66666666666666666666666666666666666666555543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-34  Score=277.69  Aligned_cols=195  Identities=26%  Similarity=0.227  Sum_probs=170.3

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccc-cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKY-STFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACR   87 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~-~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~   87 (513)
                      .|.++||.||+.|+.+++++||++|++.... ..+..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+.
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~   87 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR   87 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhc
Confidence            4578999999999999999999998775533 233445899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCC-----------------------------------------------CcccCCCCCcHHHHHH
Q 010335           88 YGHWEVVQTLLLFRCNV-----------------------------------------------TRADYLSGRTALHFAA  120 (513)
Q Consensus        88 ~g~~eiVk~LL~~ga~~-----------------------------------------------~~~~~~~G~TpLh~A~  120 (513)
                      .++.+++++|++.+...                                               +..+ .+|.||||+|+
T Consensus        88 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~g~TpLh~A~  166 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAV  166 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC-TTSCCHHHHHH
T ss_pred             cCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccc-ccCcccccccc
Confidence            99999999997543221                                               1122 36899999999


Q ss_pred             HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335          121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL  200 (513)
Q Consensus       121 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~  200 (513)
                      ..++.+++++|++.+...                                ....+..|.||||+|+..|+.++|++|+++
T Consensus       167 ~~~~~~~v~~Ll~~~~~~--------------------------------~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~  214 (255)
T d1oy3d_         167 IHKDAEMVRLLRDAGADL--------------------------------NKPEPTCGRTPLHLAVEAQAASVLELLLKA  214 (255)
T ss_dssp             HTTCHHHHHHHHHHTCCT--------------------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccchhcccccc--------------------------------cccccccccccccccccccHHHHHHHHHHC
Confidence            999999999999875431                                234466799999999999999999999999


Q ss_pred             CCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335          201 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       201 Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  246 (513)
                      |++++.++..          |.||||+|+..++.+++++|+++||+
T Consensus       215 gadin~~d~~----------g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         215 GADPTARMYG----------GRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TCCTTCCCTT----------SCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999977          99999999999999999999999997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=8.6e-35  Score=285.02  Aligned_cols=239  Identities=24%  Similarity=0.293  Sum_probs=197.9

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYG   89 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g   89 (513)
                      ++++|+.|++.||+++|++||++|++++..+..+  .||||+|+..|+.++|++|+++|++++..+..+.|||++|+..+
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G--~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDG--LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTC--CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC--CcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            4688999999999999999999999987655554  89999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchh---H
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS---A  166 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  166 (513)
                      +.+++++|+++|+..+..+. .+.+++++|+..++.+.++.++...............         .........   .
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  187 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE---------RIMLRDARQWLNS  187 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred             ccchhhcccccCcccccccc-cCccccccccccccchhcccccccccccccccccccc---------ccccccchhhhcc
Confidence            99999999999999888775 8999999999999999999998643321110000000         000000000   0


Q ss_pred             HHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCC
Q 010335          167 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  246 (513)
Q Consensus       167 ~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  246 (513)
                      ........+..|.||||+|+..|+.+++++|++.|++++..+..          |.||||+|+..|+.++|++|+++|+|
T Consensus       188 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~----------g~TpL~~A~~~g~~~iv~lLl~~Gad  257 (291)
T d1s70b_         188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCD  257 (291)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccccccccCCCCChhhHHHHcCChhhhcccccceecccccccC----------CCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            01113446678999999999999999999999999999998876          99999999999999999999999999


Q ss_pred             CCCcCCCCCcHHHHHHHcCccchhhhcC
Q 010335          247 RMSLNCNGWLPLDVARMWGRHWLEPLLA  274 (513)
Q Consensus       247 ~~~~d~~G~TpL~~A~~~g~~~iv~lL~  274 (513)
                      ++.+|.+|+||||+|++    +++++|.
T Consensus       258 v~~~d~~G~TaL~~A~e----~~~~~L~  281 (291)
T d1s70b_         258 MEAVNKVGQTAFDVADE----DILGYLE  281 (291)
T ss_dssp             TTCCCTTSCCTTTSCCS----GGGHHHH
T ss_pred             CCCcCCCCCCHHHHHHH----HHHHHHH
Confidence            99999999999999975    4555553

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=9.1e-35  Score=282.06  Aligned_cols=250  Identities=20%  Similarity=0.182  Sum_probs=190.1

Q ss_pred             HHHHHHHH-cCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHH--------HHCCCCCCCCCCCCChHH
Q 010335           12 ERLVSAAR-DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALL--------LENGADVNSRNYCGQTAL   82 (513)
Q Consensus        12 ~~L~~Aa~-~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~L--------L~~Gadvn~~d~~g~TpL   82 (513)
                      +||+.|++ .|+.++++.|.+.+.+...  . ..|+||||+||..|+.++|++|        ++.|+|||.+|.+|.|||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~--~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID--P-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC--C-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC--C-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            45564433 4667777777777766543  2 2358999999999999998776        567999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccC------CCCccccchhhhcccCCCCc
Q 010335           83 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV------PSVPFEVMNTQIEGDRGDGS  156 (513)
Q Consensus        83 h~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~------~~~~~~~~~~~~~~~~~~~~  156 (513)
                      |+|+.+|+.++|++|+++|++++..+. .|.|||++|+..++.++++++.....      ....................
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~n~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             ccccccccccccccccccccccccccc-cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            999999999999999999999998885 89999999999999999998874321      00000010000000011000


Q ss_pred             hh-hhhhch-------hHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHH-HcCCCcccccccCCccccccCCCCchhHH
Q 010335          157 SV-KSKCDQ-------SALSKFVNKAADGGITALHMAALNGYFDCVQLLL-DLHANVSAVTFHYGTSMDLIGAGSTPLHF  227 (513)
Q Consensus       157 ~~-~~~~~~-------~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll-~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  227 (513)
                      .. ......       .......+..+..|+|+||+++..++.+++++++ ..+.+++..+..          |.||||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~----------g~tpL~~  227 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----------GKTPIML  227 (277)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT----------CCCHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCC----------CCCHHHH
Confidence            00 000000       0111123456678999999999999999998755 678888888866          9999999


Q ss_pred             HhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCC
Q 010335          228 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  275 (513)
Q Consensus       228 Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~  275 (513)
                      |+..|+.++|++|+++|+|++.+|.+|+||||+|++.|+.+++++|.+
T Consensus       228 A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-33  Score=263.25  Aligned_cols=219  Identities=24%  Similarity=0.250  Sum_probs=188.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC---CCCCCChHHHHHHHc
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS---RNYCGQTALMQACRY   88 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~---~d~~g~TpLh~A~~~   88 (513)
                      .|||+||+.|+++.|+.||+.++..... .+..|+||||+|+..|+.+++++|+++|++++.   .+..|.+|+|+|+..
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5899999999999999999876544332 334459999999999999999999999999874   567899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHH
Q 010335           89 GHWEVVQTLLLFRCNVTRA-DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL  167 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~-~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (513)
                      +..++++.++..+...... ....+.|+|+.++..++.+++++|+..+..                              
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~------------------------------  130 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------------------------------  130 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc------------------------------
Confidence            9999999999988765432 224789999999999999999999976543                              


Q ss_pred             HHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH-CCC
Q 010335          168 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGA  245 (513)
Q Consensus       168 ~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Ga  245 (513)
                         .+..+..|+||||+|+.+|+.+++++|++.| .+++..+..          |.||||+|+..|+.++|++|++ .|+
T Consensus       131 ---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~----------g~TpLh~A~~~~~~~~v~~Ll~~~ga  197 (229)
T d1ixva_         131 ---VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ----------GWTPLFHALAEGHGDAAVLLVEKYGA  197 (229)
T ss_dssp             ---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHCC
T ss_pred             ---ccccCCCCCCccchhhhcccccccccccccccccccccccc----------cCCchhhhcccccHHHHHHHHHhcCC
Confidence               4556778999999999999999999999987 577888866          9999999999999999999997 599


Q ss_pred             CCCCcCCCCCcHHHHHHHcCccchhhhcCCCC
Q 010335          246 SRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  277 (513)
Q Consensus       246 d~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~  277 (513)
                      |++.+|.+|+||||+|+.   .+++++|.+++
T Consensus       198 d~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g  226 (229)
T d1ixva_         198 EYDLVDNKGAKAEDVALN---EQVKKFFLNNV  226 (229)
T ss_dssp             CSCCCCTTSCCTGGGCSC---HHHHHHHHHHC
T ss_pred             CCCCcCCCCCCHHHHHhh---HHHHHHHHHcC
Confidence            999999999999999984   46778777544

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.4e-31  Score=252.96  Aligned_cols=187  Identities=29%  Similarity=0.299  Sum_probs=173.1

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .+.++||+|+..|+.+++++|++.+..........  .+++++|+..|+.+++++|+++|++++.+|..|.||||+|+.+
T Consensus        36 ~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~  113 (223)
T d1uoha_          36 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG--WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK  113 (223)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHhhhhcccccccccccccccccccc--cccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHc
Confidence            45689999999999999999999988776655544  8999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      |+.+++++|+++|++++..+. .|.||||+|+..++.+++++|+..+.+                               
T Consensus       114 ~~~e~~~~Ll~~g~d~~~~~~-~~~t~L~~a~~~~~~~~~~~L~~~~~~-------------------------------  161 (223)
T d1uoha_         114 NRHEIAVMLLEGGANPDAKDH-YEATAMHRAAAKGNLKMIHILLYYKAS-------------------------------  161 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------------
T ss_pred             CCHHHHHHHHHCCCCCCCcCC-CCCccchhhhhcCCcchhhhhccccce-------------------------------
Confidence            999999999999999998885 899999999999999999999876543                               


Q ss_pred             HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH
Q 010335          169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  242 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~  242 (513)
                        ++..|..|+||||+|+..|+.++|++|+++|+|++..|..          |+||||+| ..|+.+++++||+
T Consensus       162 --i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~----------g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         162 --TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKE----------EKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             --SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHC-CTTHHHHHHHHHC
T ss_pred             --eeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCC----------CCCHHHHH-HCCCHHHHhcccC
Confidence              6778889999999999999999999999999999999977          99999998 4799999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.1e-33  Score=260.42  Aligned_cols=198  Identities=25%  Similarity=0.315  Sum_probs=170.0

Q ss_pred             CCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335           45 LNSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA  120 (513)
Q Consensus        45 g~TpLh~Aa~~g~~----eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~  120 (513)
                      |.||||+|+..|+.    +++++|...|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..+. .|.|||++|+
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~-~g~t~l~~~~   80 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-RGNTPLHLAC   80 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT-TCCCHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccc-cccccccccc
Confidence            59999999999995    556667778999999999999999999999999999999999999998875 8999999999


Q ss_pred             HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335          121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL  200 (513)
Q Consensus       121 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~  200 (513)
                      ..++.++++.|+..+.......                           ........|.||||.|+..++.+++++|++.
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~---------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  133 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHS---------------------------ILKATNYNGHTCLHLASIHGYLGIVELLVSL  133 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSC---------------------------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccccc---------------------------cccccccccchhhhHHhhcCChhheeeeccc
Confidence            9999999999997654321111                           1334455688999999999999999999999


Q ss_pred             CCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCCCC
Q 010335          201 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  279 (513)
Q Consensus       201 Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~~  279 (513)
                      |++++..+..         .|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|++.++.+++++|.+....
T Consensus       134 ~~~~~~~~~~---------~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         134 GADVNAQEPC---------NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             Cccccccccc---------CCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            9999887643         399999999999999999999999999999999999999999999999999888765443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.8e-31  Score=269.16  Aligned_cols=249  Identities=28%  Similarity=0.344  Sum_probs=204.5

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .+..+|+.|+..++.+++++|++.+.+++.....+  .+|||+|+..|+.+++++|+++|++++..+..|.||||+++..
T Consensus       131 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~--~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~  208 (408)
T d1n11a_         131 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG--LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ  208 (408)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSC--CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcC--chHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhcc
Confidence            45678999999999999999999998887655544  8999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCcccc---chhhhcccCCCCchhhhhhchh
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEV---MNTQIEGDRGDGSSVKSKCDQS  165 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  165 (513)
                      .+.++..+|+..+......+. .|.|||++|+..++.+++++++...........   ..................   .
T Consensus       209 ~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~L---l  284 (408)
T d1n11a_         209 NQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL---I  284 (408)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH---H
T ss_pred             chhhhhhhhhhccccccccCC-CCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHH---H
Confidence            999999999998888777665 789999999999999999999876543322111   001111111111111100   0


Q ss_pred             HHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCC
Q 010335          166 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA  245 (513)
Q Consensus       166 ~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga  245 (513)
                      .....++..+..+.||||.|+..++.+++++|++.|++++.++..          |.||||+|++.|+.++|++|+++||
T Consensus       285 ~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~----------G~T~Lh~A~~~g~~~iv~~Ll~~GA  354 (408)
T d1n11a_         285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL----------GYSPLHQAAQQGHTDIVTLLLKNGA  354 (408)
T ss_dssp             HHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HCCCccccccccccccchhhcccCcceeeeeeccccccccccCCC----------CCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            111234666778999999999999999999999999999999976          9999999999999999999999999


Q ss_pred             CCCCcCCCCCcHHHHHHHcCccchhhhc
Q 010335          246 SRMSLNCNGWLPLDVARMWGRHWLEPLL  273 (513)
Q Consensus       246 d~~~~d~~G~TpL~~A~~~g~~~iv~lL  273 (513)
                      |++.+|.+|+||||+|+++|+.+++++|
T Consensus       355 d~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         355 SPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             CSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999998866

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-30  Score=251.10  Aligned_cols=246  Identities=25%  Similarity=0.251  Sum_probs=191.5

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      .+.|+.|++.||+++|++||++|++++..... .|.||||+|+..|+.+++++|++.|.+++..+..+.+|.++|+..+.
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~-~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCC-CCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            47899999999999999999999998765443 35999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF  170 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      .+...+++.+..+....+. .+.++|++|+..++...+..++............                       ...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~  140 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT-----------------------KED  140 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC-----------------------CHH
T ss_pred             ccccchhhhhccccccccc-CCCchhHHHHHhcchhhhhhhhhhcccccccccc-----------------------hhh
Confidence            9999999999877766664 8999999999999999999988654432111100                       001


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCccc--------------------------c-ccCCCC
Q 010335          171 VNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSM--------------------------D-LIGAGS  222 (513)
Q Consensus       171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~-Gadvn~~~~~~~~~~--------------------------~-~~~~G~  222 (513)
                      ....+..|.||||+|+.+|+.+++++|+++ |++++..+.......                          . ....|.
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~  220 (285)
T d1wdya_         141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK  220 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred             hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCC
Confidence            223344566777777777776666666643 556655543311100                          0 012489


Q ss_pred             chhHHHhhCCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHcCccchhhhcCCC-CCCCC
Q 010335          223 TPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVM  281 (513)
Q Consensus       223 TpLh~Aa~~g~~eivk~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~-~~~~~  281 (513)
                      ||||+|+..|+.++|++|+++ |++++.+|.+|.||||+|++.|+.+++++|++. ++++.
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            999999999999999999974 999999999999999999999999999887664 44443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=5.8e-31  Score=244.75  Aligned_cols=207  Identities=31%  Similarity=0.290  Sum_probs=186.6

Q ss_pred             HHHHHHHHhcCCCCccc-cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 010335           23 FVEAKMLLDCNPCLAKY-STFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFR  101 (513)
Q Consensus        23 ~e~vk~LL~~~~~~~~~-~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~g  101 (513)
                      -|+|++||++|++++.. +.+|  .||||+||..|+.+++++|+++|+++|.++..+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G--~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTG--ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCC--CCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence            48999999999998653 3344  89999999999999999999999999999999999999999999999888887776


Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcH
Q 010335          102 CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA  181 (513)
Q Consensus       102 a~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~Tp  181 (513)
                      ..........|.++.+.+.........+.|...+..                                 ++..+..|+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~---------------------------------~~~~~~~~~t~  126 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD---------------------------------INAADNSGKTA  126 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC---------------------------------TTCBCTTSCBH
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhccc---------------------------------ccccCCCCCCc
Confidence            665555556789999999999999999998865443                                 56677889999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335          182 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  261 (513)
Q Consensus       182 Lh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A  261 (513)
                      |++|+.++..++++.|++.+.+++..+..          |.||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|
T Consensus       127 l~~~~~~~~~~~~~~l~~~~~~~~~~d~~----------g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A  196 (209)
T d1ot8a_         127 LHWAAAVNNTEAVNILLMHHANRDAQDDK----------DETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVA  196 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             chhhcccCcceeeeeeccccccccccccc----------cccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999999999876          99999999999999999999999999999999999999999


Q ss_pred             HHcCccchhhhcC
Q 010335          262 RMWGRHWLEPLLA  274 (513)
Q Consensus       262 ~~~g~~~iv~lL~  274 (513)
                      ++.|+.+|+++|.
T Consensus       197 ~~~~~~~iv~lL~  209 (209)
T d1ot8a_         197 SERLHHDIVRLLD  209 (209)
T ss_dssp             HHTTCHHHHHHHC
T ss_pred             HHcCCHHHHhhcC
Confidence            9999999999983

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-30  Score=237.85  Aligned_cols=218  Identities=28%  Similarity=0.294  Sum_probs=146.6

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHh----cCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 010335           10 SGERLVSAARDGDFVEAKMLLD----CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQA   85 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~----~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A   85 (513)
                      |.+|||.|++.|++++++.|++    .|.+++..+..  |+||||+|+..|+.+++++|+++|++++..+..|.++++.|
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~--g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL--RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCC--CCccceehhcccccccccccccccccccccccccccccccc
Confidence            3455555555555555555543    34444433322  25555555555555555555555555555555555555555


Q ss_pred             HHcCCHHHHHHHHhcCCCCC---cccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhh
Q 010335           86 CRYGHWEVVQTLLLFRCNVT---RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC  162 (513)
Q Consensus        86 ~~~g~~eiVk~LL~~ga~~~---~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (513)
                      ...++.++++.+........   ........++|+.+.........+.|......                         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-------------------------  135 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-------------------------  135 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------------
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccc-------------------------
Confidence            55555555555544322111   11112344555555555555555555432211                         


Q ss_pred             chhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHH
Q 010335          163 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  242 (513)
Q Consensus       163 ~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~  242 (513)
                             ........|.++|+.|+..+...++++++++|.+++..+..          |.||||+|+..|+.++|++|++
T Consensus       136 -------~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~----------g~t~L~~A~~~g~~~~v~~Ll~  198 (228)
T d1k1aa_         136 -------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS----------GSSALHSASGRGLLPLVRTLVR  198 (228)
T ss_dssp             -------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHHTCHHHHHHHHH
T ss_pred             -------cccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccccc----------CcchHHHHHHcCCHHHHHHHHH
Confidence                   12345567899999999999999999999999999998876          9999999999999999999999


Q ss_pred             CCCCCCCcCCCCCcHHHHHHHcCccchhh
Q 010335          243 RGASRMSLNCNGWLPLDVARMWGRHWLEP  271 (513)
Q Consensus       243 ~Gad~~~~d~~G~TpL~~A~~~g~~~iv~  271 (513)
                      +|+|++.+|.+|+||||+|+++|+.+|++
T Consensus       199 ~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         199 SGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             TTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999988875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-29  Score=238.80  Aligned_cols=207  Identities=25%  Similarity=0.256  Sum_probs=179.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcc--cCCCCCcHHHHHHHc
Q 010335           46 NSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRA--DYLSGRTALHFAAVN  122 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~--~~~~G~TpLh~A~~~  122 (513)
                      +||||+||..|+.++|+.|++ .+.+++.+|.+|.||||+|+..|+.++|++|+++|++++..  .+..|.+|+|+|+..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            589999999999999999987 56899999999999999999999999999999999998643  234789999999999


Q ss_pred             CCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 010335          123 GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA  202 (513)
Q Consensus       123 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga  202 (513)
                      +..++++.++..+....                               ....+..+.|+|+.++..++.+++++|++.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  129 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPD-------------------------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA  129 (229)
T ss_dssp             TCHHHHHHHHSSSSCCC-------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccccccccccccccccc-------------------------------ccccccccccccccccccchhhhhhhhhhhcc
Confidence            99999999886543211                               33455678899999999999999999999999


Q ss_pred             CcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHcCccchhhhcCC--CCCC
Q 010335          203 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLAP--SSDA  279 (513)
Q Consensus       203 dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~--~~~~  279 (513)
                      +.+..+..          |.||||+|+..|+.+++++|+++| .+++.+|.+|+||||+|+..|+.+++++|+.  +.++
T Consensus       130 ~~~~~~~~----------g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~  199 (229)
T d1ixva_         130 SVRIKDKF----------NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY  199 (229)
T ss_dssp             CSCCCCTT----------SCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred             cccccCCC----------CCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCC
Confidence            99988876          999999999999999999999987 6889999999999999999999999998874  4555


Q ss_pred             CCCCCCCCCccccchhHH
Q 010335          280 VMPRFHPSNYLSLPLLSV  297 (513)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~  297 (513)
                      +..    +..+.+|+..+
T Consensus       200 ~~~----d~~g~t~l~~A  213 (229)
T d1ixva_         200 DLV----DNKGAKAEDVA  213 (229)
T ss_dssp             CCC----CTTSCCTGGGC
T ss_pred             CCc----CCCCCCHHHHH
Confidence            554    45566666544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.8e-29  Score=246.75  Aligned_cols=241  Identities=23%  Similarity=0.243  Sum_probs=190.4

Q ss_pred             HHcCCHHHHHHHHhcCCCCccccCC-------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           18 ARDGDFVEAKMLLDCNPCLAKYSTF-------GGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        18 a~~G~~e~vk~LL~~~~~~~~~~~~-------~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      ++....+.++.++....+.......       ..+.|+||.||..|++++|++||++|+|+|.+|.+|.||||+|+.+|+
T Consensus         6 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~   85 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN   85 (291)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             HhHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCC
Confidence            4455567777777665444321111       123599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF  170 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      .++|++|+++|++...... .+.+||++|+..++.++++.|++.+..                                 
T Consensus        86 ~eiv~~Ll~~~~~~~~~~~-~~~~~L~~a~~~~~~~~~~~l~~~~~~---------------------------------  131 (291)
T d1s70b_          86 VDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAH---------------------------------  131 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------
T ss_pred             ceeeeeecccccccccccc-cccccccccccccccchhhcccccCcc---------------------------------
Confidence            9999999999999887775 899999999999999999999987643                                 


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccccc----------------CCccccccCCCCchhHHHhhCCC
Q 010335          171 VNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFH----------------YGTSMDLIGAGSTPLHFAACGGN  233 (513)
Q Consensus       171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~-Gadvn~~~~~----------------~~~~~~~~~~G~TpLh~Aa~~g~  233 (513)
                      .+..+..|.+++++|+..++.+.++.|+.. +.++......                ..........|.||||+|+..|+
T Consensus       132 ~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~  211 (291)
T d1s70b_         132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY  211 (291)
T ss_dssp             TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             cccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCC
Confidence            445567888999999999999998888853 3333211111                00011122359999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CCCCCCCCCCCccccchhH
Q 010335          234 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVMPRFHPSNYLSLPLLS  296 (513)
Q Consensus       234 ~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~~~~~~~~~~~~~~~l~~  296 (513)
                      .+++++|+++|++++.++.+|+||||+|+..|+.+++++|++.+ +++..    +..+.+|++.
T Consensus       212 ~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~----d~~G~TaL~~  271 (291)
T d1s70b_         212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV----NKVGQTAFDV  271 (291)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCTTTS
T ss_pred             hhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHH
Confidence            99999999999999999999999999999999999999887654 44433    4555666554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=2.6e-29  Score=243.21  Aligned_cols=218  Identities=20%  Similarity=0.174  Sum_probs=156.9

Q ss_pred             CcHHHHHHHHcCCHHHHHHHH--------hcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH
Q 010335           10 SGERLVSAARDGDFVEAKMLL--------DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTA   81 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL--------~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~Tp   81 (513)
                      +.++||.||..|+.++|+.|+        +.|++++..+..  |+||||+|+..|+.++|++|+++|+|++.+|..|.||
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~--G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD--ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCC--CCeeecccccccccccccccccccccccccccccccc
Confidence            568999999999999998874        568888765544  4999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcC---CCCCcccCCCCCcHHHHHHHcCCHH---HHHHHHHccCCCCccccchh---------
Q 010335           82 LMQACRYGHWEVVQTLLLFR---CNVTRADYLSGRTALHFAAVNGHVR---CIRLVVADFVPSVPFEVMNT---------  146 (513)
Q Consensus        82 Lh~A~~~g~~eiVk~LL~~g---a~~~~~~~~~G~TpLh~A~~~g~~~---iv~~Ll~~~~~~~~~~~~~~---------  146 (513)
                      |++|+..++.+++++++..+   ..++..+. .+.++.+.+...+..+   .+.++...............         
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  189 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  189 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             ccchhhhcchhhhhhhhhccccccccccccc-ccchhHHHHHhcccccccccccccccccccccccccccccccccCCCC
Confidence            99999999999999887543   22333332 5566666666655322   33333332222111111000         


Q ss_pred             --hhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCch
Q 010335          147 --QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP  224 (513)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~Tp  224 (513)
                        ......+...  ............++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..          |.||
T Consensus       190 ~L~~~~~~~~~~--~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~----------G~T~  257 (277)
T d2fo1e1         190 ALHYAAQVSNMP--IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT----------DHTA  257 (277)
T ss_dssp             THHHHHSSCCHH--HHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSS----------SCCH
T ss_pred             cccccccccccc--ccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCC----------CCCH
Confidence              0000000000  0000001111235667889999999999999999999999999999999977          9999


Q ss_pred             hHHHhhCCCHHHHHHHHH
Q 010335          225 LHFAACGGNLKCCQVLLS  242 (513)
Q Consensus       225 Lh~Aa~~g~~eivk~LL~  242 (513)
                      ||+|+..|+.++|++|++
T Consensus       258 L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         258 RQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHH
Confidence            999999999999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=237.77  Aligned_cols=192  Identities=27%  Similarity=0.278  Sum_probs=162.5

Q ss_pred             CcHHHHHHHHcCCHHH----HHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 010335           10 SGERLVSAARDGDFVE----AKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQA   85 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~----vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A   85 (513)
                      |.++||.|+..|+.++    +++++..+.+++..+..  |+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~--g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL--QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT--CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCC--CCccccccccccccccccccccccccccccccccccccccc
Confidence            5678999999999655    45555677777665444  49999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCcc-----cCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhh
Q 010335           86 CRYGHWEVVQTLLLFRCNVTRA-----DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS  160 (513)
Q Consensus        86 ~~~g~~eiVk~LL~~ga~~~~~-----~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (513)
                      +..|+.++++.|+..+......     ....|.||||+|+..++.+++++|+..+..                       
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~-----------------------  136 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-----------------------  136 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-----------------------
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcc-----------------------
Confidence            9999999999999987654322     223689999999999999999999876543                       


Q ss_pred             hhchhHHHHhccc-ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHH
Q 010335          161 KCDQSALSKFVNK-AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  239 (513)
Q Consensus       161 ~~~~~~~~~~i~~-~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~  239 (513)
                                ++. .+.+|.||||+|+..|+.+++++|+++|+|++.++..          |.||||+|+..++.+++++
T Consensus       137 ----------~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~----------G~tpl~~A~~~~~~~~~~~  196 (221)
T d1iknd_         137 ----------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ----------GYSPYQLTWGRPSTRIQQQ  196 (221)
T ss_dssp             ----------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT----------CCCGGGGCTTSSCHHHHHH
T ss_pred             ----------cccccccCCCCccccccccccHHHHHHHHhcCCcccccCCC----------CCCHHHHHHHCCCHHHHHH
Confidence                      222 3457999999999999999999999999999999977          9999999999999999999


Q ss_pred             HHHCCCC
Q 010335          240 LLSRGAS  246 (513)
Q Consensus       240 LL~~Gad  246 (513)
                      |++.+.+
T Consensus       197 l~~~~~~  203 (221)
T d1iknd_         197 LGQLTLE  203 (221)
T ss_dssp             HHTTSCG
T ss_pred             HHHcCCc
Confidence            9998665

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.4e-28  Score=213.36  Aligned_cols=153  Identities=30%  Similarity=0.366  Sum_probs=136.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHH
Q 010335           47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR  126 (513)
Q Consensus        47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~  126 (513)
                      +|||+||..|++++|++|+++|+|+|.+|.+|.||||+|+ .|+.+++++|+++|++++..+. .|.++|+.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~-~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccc-cCcccccccccccccc
Confidence            7999999999999999999999999999999999999886 7899999999999999988875 8999999999999999


Q ss_pred             HHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCC-Ccc
Q 010335          127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA-NVS  205 (513)
Q Consensus       127 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Ga-dvn  205 (513)
                      .++.|+..+..                                 ++..+..|.+|||+|+..++.+++++|+++|+ +++
T Consensus        81 ~~~~l~~~~~~---------------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  127 (156)
T d1ihba_          81 TLQTLLEFQAD---------------------------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG  127 (156)
T ss_dssp             HHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred             ccccccccccc---------------------------------cccccccccccccccccccccccccccccccccccc
Confidence            99999876543                                 55667789999999999999999999999887 777


Q ss_pred             cccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCC
Q 010335          206 AVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  244 (513)
Q Consensus       206 ~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  244 (513)
                      .++..          |.||||+|+..|+.++|++|+++|
T Consensus       128 ~~d~~----------g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         128 HRNHK----------GDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCCTT----------SCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccCCC----------CCCHHHHHHHcCCHHHHHHHHhcC
Confidence            77766          899999999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1.8e-29  Score=254.56  Aligned_cols=205  Identities=19%  Similarity=0.067  Sum_probs=157.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHH---HHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccC-CCCCcHHHHH
Q 010335           44 GLNSPLHFAAAKGHNEIVAL---LLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADY-LSGRTALHFA  119 (513)
Q Consensus        44 ~g~TpLh~Aa~~g~~eivk~---LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~-~~G~TpLh~A  119 (513)
                      .|.||||+||.+|+.+++++   |++.|+++|.+|..|.||||+|+++||.++|++|+++|++++..+. .+|.||||+|
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            45899999999999877665   7899999999999999999999999999999999999999887652 2589999999


Q ss_pred             HHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHH
Q 010335          120 AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD  199 (513)
Q Consensus       120 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~  199 (513)
                      +.+|+.++|++|++.+...                              ...+..+.+|.||+|.|+.+|+.++|++|++
T Consensus       169 a~~g~~~iv~~Ll~~~~~~------------------------------~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~  218 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPTE------------------------------ATAMIQAENYYAFRWAAVGRGHHNVINFLLD  218 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGGG------------------------------HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHcCCcc------------------------------cccccccCCCcchhhHHhhcCHHHHHHHHHh
Confidence            9999999999999765321                              0122333446688888999999999999999


Q ss_pred             cCCCcccccccCCcc----------------------c---------ccc--------CCCCchhHHHhhCCCHHHHHHH
Q 010335          200 LHANVSAVTFHYGTS----------------------M---------DLI--------GAGSTPLHFAACGGNLKCCQVL  240 (513)
Q Consensus       200 ~Gadvn~~~~~~~~~----------------------~---------~~~--------~~G~TpLh~Aa~~g~~eivk~L  240 (513)
                      .|++++..+......                      +         +..        ..+.++|+.|+..++.+++++|
T Consensus       219 ~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~L  298 (346)
T d2ajaa1         219 CPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL  298 (346)
T ss_dssp             SHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred             CCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHH
Confidence            988765433221000                      0         000        0134789999999999999999


Q ss_pred             HHCCCC-----CCCcCCCCCcHHHHHHHcCccchhhhcCCCCC
Q 010335          241 LSRGAS-----RMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  278 (513)
Q Consensus       241 L~~Gad-----~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~~  278 (513)
                      ++.++.     .+..+.+|+||||+|++.|+.+++++|+.-+.
T Consensus       299 l~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         299 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             HTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             HhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCCC
Confidence            988764     34456789999999999999999999987543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.9e-26  Score=210.62  Aligned_cols=211  Identities=28%  Similarity=0.314  Sum_probs=179.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335           45 LNSPLHFAAAKGHNEIVALLLE----NGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA  120 (513)
Q Consensus        45 g~TpLh~Aa~~g~~eivk~LL~----~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~  120 (513)
                      |+||||+||..|+.++|++|++    .|+++|.+|..|.||||+|+..|+.++|++|+++|++.+.... .|.++++.|.
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~-~~~~~~~~a~   81 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAHLAC   81 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccc-cccccccccc
Confidence            5999999999999999998874    8999999999999999999999999999999999999998775 8999999999


Q ss_pred             HcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335          121 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL  200 (513)
Q Consensus       121 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~  200 (513)
                      ..++.++++.+.........                             ..+.......++|+.+.........+.|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  132 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTL-----------------------------DLEARNYDGLTALHVAVNTECQETVQLLLER  132 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSC-----------------------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             ccccccchhhhhhccccccc-----------------------------cccccccccccccccccccccchhhhhhhcc
Confidence            99999999988754332111                             0233445677999999999999999999998


Q ss_pred             CCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcCCCC-CC
Q 010335          201 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DA  279 (513)
Q Consensus       201 Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~~~~-~~  279 (513)
                      ..+.......         .|.+||++|+..+...+++.++++|.+++.+|.+|.||||+|+..|+.+++++|++.+ ++
T Consensus       133 ~~~~~~~~~~---------~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~  203 (228)
T d1k1aa_         133 GADIDAVDIK---------SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS  203 (228)
T ss_dssp             TCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             cccccccccc---------chhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC
Confidence            8776555433         3899999999999999999999999999999999999999999999999999888764 44


Q ss_pred             CCCCCCCCCccccchhHHH
Q 010335          280 VMPRFHPSNYLSLPLLSVL  298 (513)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~l  298 (513)
                      +..    +..+.+|++.|+
T Consensus       204 n~~----d~~G~TpL~~A~  218 (228)
T d1k1aa_         204 SLK----NCHNDTPLMVAR  218 (228)
T ss_dssp             TCC----CTTSCCTTTTCS
T ss_pred             CCC----CCCCCCHHHHHH
Confidence            433    566778876544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-25  Score=218.02  Aligned_cols=230  Identities=25%  Similarity=0.260  Sum_probs=181.2

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus         9 ~~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      .+.+|||.|+..|+.+++++|++.+..........  .+|.++|+..+..+...++++...+....+..+.|+|++|+..
T Consensus        38 ~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  115 (285)
T d1wdya_          38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHhhhhcccccccccccccc--chhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHh
Confidence            46689999999999999999999998876654444  8999999999999999999999888888899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccC---------CCCCcHHHHHHHcCCHHHHHHHHHccC-CCCcccc---chhh---hcccC
Q 010335           89 GHWEVVQTLLLFRCNVTRADY---------LSGRTALHFAAVNGHVRCIRLVVADFV-PSVPFEV---MNTQ---IEGDR  152 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~---------~~G~TpLh~A~~~g~~~iv~~Ll~~~~-~~~~~~~---~~~~---~~~~~  152 (513)
                      ++..+++.++....+++....         ..|.||||+|+.+|+.+++++|++... .......   ....   .....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~  195 (285)
T d1wdya_         116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             cchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccc
Confidence            999999999988776654332         368999999999999999999997532 2111100   0000   00000


Q ss_pred             CCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCccccccCCCCchhHHHhhC
Q 010335          153 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACG  231 (513)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~-~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~  231 (513)
                      .....+....  ......++.++..|.||||+|+..|+.++|++|++ .|++++.+|..          |.||||+|+++
T Consensus       196 ~~~~~i~~~L--i~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~----------G~TpL~~A~~~  263 (285)
T d1wdya_         196 SDVEAITHLL--LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD----------GKTALLLAVEL  263 (285)
T ss_dssp             TTHHHHHHHH--HHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTT----------SCCHHHHHHHT
T ss_pred             hHHHHHHHHH--HHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCC----------CCCHHHHHHHc
Confidence            0000000000  01122356788899999999999999999999998 59999999876          99999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCC
Q 010335          232 GNLKCCQVLLSRGASRMSLNC  252 (513)
Q Consensus       232 g~~eivk~LL~~Gad~~~~d~  252 (513)
                      |+.++|++||++|||+|++|.
T Consensus       264 ~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         264 KLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCHHHHHHHHHCCCCCCcccC
Confidence            999999999999999999874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4e-26  Score=202.02  Aligned_cols=155  Identities=31%  Similarity=0.424  Sum_probs=142.4

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      +++||.||..|++++|++|+++|++++..+..  |.||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..++
T Consensus         2 ~~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~--g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           2 GNELASAAARGDLEQLTSLLQNNVNVNAQNGF--GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTT--SCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHCCCCcCccCCc--ccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            48999999999999999999999998765544  499999886 799999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHh
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF  170 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (513)
                      .+.+++|++.+.+++..+. .|.+|||+|+..++.+++++|++++...                                
T Consensus        79 ~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~--------------------------------  125 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASN--------------------------------  125 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCC--------------------------------
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccccccccccc--------------------------------
Confidence            9999999999999998875 8999999999999999999999876421                                


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 010335          171 VNKAADGGITALHMAALNGYFDCVQLLLDLH  201 (513)
Q Consensus       171 i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~G  201 (513)
                      .+.+|..|.||||+|+.+|+.++|++|+++|
T Consensus       126 ~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            5677889999999999999999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.2e-26  Score=201.24  Aligned_cols=150  Identities=27%  Similarity=0.376  Sum_probs=134.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV  125 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~  125 (513)
                      .||||.||+.|+.++|++||++|++++ .|..|+||||+|+..++.++++.++........... .+.+++++++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            489999999999999999999999887 688999999999999999999999988877766554 788999999999999


Q ss_pred             HHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 010335          126 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVS  205 (513)
Q Consensus       126 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn  205 (513)
                      +++++|+..+..                                 .+.++..|+||||+|+..|+.++|++|++.|+|++
T Consensus        81 ~~~~~l~~~~~~---------------------------------~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~  127 (153)
T d1awcb_          81 NIVEVLLKHGAD---------------------------------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH  127 (153)
T ss_dssp             HHHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             eeeecccccCCc---------------------------------cccccccCchHHHhhhhcchhheeeeccccccCCc
Confidence            999999866543                                 45677889999999999999999999999999999


Q ss_pred             cccccCCccccccCCCCchhHHHhhCCCHHHHHHH
Q 010335          206 AVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  240 (513)
Q Consensus       206 ~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L  240 (513)
                      ..+..          |.||||+|+.+|+.+++++|
T Consensus       128 ~~d~~----------g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         128 TQSKF----------CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCCTT----------SCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCCC----------CCCHHHHHHHcCCHHHHHhC
Confidence            98877          99999999999999999977

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.4e-26  Score=203.20  Aligned_cols=150  Identities=26%  Similarity=0.306  Sum_probs=82.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHH
Q 010335           48 PLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR  126 (513)
Q Consensus        48 pLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~  126 (513)
                      .|+.||..|++++|++||++ ++++|.+|..|.||||+|+ .|+.++|++|++++.+++..+. .|.+||++++..++.+
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~-~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccc-cccccccccccccccc
Confidence            35555555555555555543 4455555555555555544 2455555555555555554443 4555555555555555


Q ss_pred             HHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 010335          127 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA  206 (513)
Q Consensus       127 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~  206 (513)
                      +++++++.+..                                 ++..|..|.||||+|+..|+.+++++|+ .|++++.
T Consensus        83 ~~~~~l~~~~~---------------------------------~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~  128 (156)
T d1bd8a_          83 TLKVLVEHGAD---------------------------------VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR  128 (156)
T ss_dssp             HHHHHHHTTCC---------------------------------SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC
T ss_pred             ccccccccccc---------------------------------cccccCCCCeeecccccccccccccccc-ccccccc
Confidence            55555544322                                 3344455556666666666666665555 4566665


Q ss_pred             ccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHC
Q 010335          207 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       207 ~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  243 (513)
                      ++..          |.||||+|+..|+.+++++|+++
T Consensus       129 ~d~~----------G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         129 RDAR----------GLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCTT----------SCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCCC----------CCCHHHHHHHcCCHHHHHHHHhh
Confidence            5544          66666666666666666666653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=7.3e-26  Score=199.65  Aligned_cols=151  Identities=26%  Similarity=0.299  Sum_probs=136.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchh
Q 010335           79 QTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSV  158 (513)
Q Consensus        79 ~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (513)
                      .||||.|++.|+.++|++||++|++++ .+ ..|+||||+|+..++.++++.++.....                     
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~-~~g~t~L~~a~~~~~~~~~~~~~~~~~~---------------------   59 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TD-WLGTSPLHLAAQYGHFSTTEVLLRAGVS---------------------   59 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CC-TTCCCHHHHHHHHTCHHHHHHHHTTTCC---------------------
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cc-cCCCcccccccccccccccccccccccc---------------------
Confidence            499999999999999999999999887 34 4899999999999999999998854332                     


Q ss_pred             hhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHH
Q 010335          159 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  238 (513)
Q Consensus       159 ~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  238 (513)
                                  ....+..+.++++.++...+.+++++|+++|++.+..+..          |.||||+|+..|+.++|+
T Consensus        60 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------g~T~L~~A~~~g~~~iv~  117 (153)
T d1awcb_          60 ------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML----------KMTALHWATEHNHQEVVE  117 (153)
T ss_dssp             ------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHH
T ss_pred             ------------ccccccccccccccccccccceeeecccccCCcccccccc----------CchHHHhhhhcchhheee
Confidence                        2334456779999999999999999999999999998876          999999999999999999


Q ss_pred             HHHHCCCCCCCcCCCCCcHHHHHHHcCccchhhhcC
Q 010335          239 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  274 (513)
Q Consensus       239 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL~  274 (513)
                      +|+++|++++.+|.+|+||||+|+.+|+.+++++|.
T Consensus       118 ~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_         118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             eccccccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence            999999999999999999999999999999999873

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-25  Score=199.47  Aligned_cols=153  Identities=25%  Similarity=0.369  Sum_probs=136.5

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 010335           10 SGERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRY   88 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~-~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~   88 (513)
                      ++++|+.||..||+++|++||+. +.+++..+  ..|+||||+|+ .|+.+++++|++++.+++..+..|.+||++|+..
T Consensus         2 ~g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d--~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN--RFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC--TTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHhCCCCCCccC--CCCCccccccc-cccccccccccccccccccccccccccccccccc
Confidence            46889999999999999999987 45554443  34499999987 5899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      ++.+++++++++|++++..+. .|.||||+|+..|+.+++++|+.. .+                               
T Consensus        79 ~~~~~~~~~l~~~~~~n~~~~-~~~t~L~~A~~~~~~~i~~~L~~~-~~-------------------------------  125 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE-SD-------------------------------  125 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT-SC-------------------------------
T ss_pred             ccccccccccccccccccccC-CCCeeecccccccccccccccccc-cc-------------------------------
Confidence            999999999999999998875 899999999999999999998742 21                               


Q ss_pred             HhcccccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 010335          169 KFVNKAADGGITALHMAALNGYFDCVQLLLDL  200 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~  200 (513)
                        ++.+|..|+||||+|+..|+.+++++|+++
T Consensus       126 --~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         126 --LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             --TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             --ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence              677889999999999999999999999975

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=6.5e-28  Score=243.07  Aligned_cols=223  Identities=18%  Similarity=0.071  Sum_probs=154.5

Q ss_pred             CcHHHHHHHHcCCHHHHHH---HHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCChHHHH
Q 010335           10 SGERLVSAARDGDFVEAKM---LLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN--YCGQTALMQ   84 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~---LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d--~~g~TpLh~   84 (513)
                      +.++|+.|++.|+.+++++   |++.|++++..+..+  .||||+||.+||.++|++|+++|++++..+  .+|.||||+
T Consensus        90 ~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g--~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~  167 (346)
T d2ajaa1          90 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN--YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL  167 (346)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHH--HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHH
T ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCC--CCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHH
Confidence            4689999999999887766   788898887655544  899999999999999999999999998876  459999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCcc--cCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhh
Q 010335           85 ACRYGHWEVVQTLLLFRCNVTRA--DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC  162 (513)
Q Consensus        85 A~~~g~~eiVk~LL~~ga~~~~~--~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (513)
                      |+.+||.++|++|++.|++....  ...+|.||++.|+.+|+.+++++|++.+.......    ......+.........
T Consensus       168 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~----~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE----IHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHH----HCTTTTTTTTHHHHHH
T ss_pred             HHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHH----HHHHHcCcHhhhHHHH
Confidence            99999999999999999875432  12256788889999999999999997653211000    0000000000000000


Q ss_pred             --c--hhHHHHhccc----------------ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCC
Q 010335          163 --D--QSALSKFVNK----------------AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS  222 (513)
Q Consensus       163 --~--~~~~~~~i~~----------------~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~  222 (513)
                        .  .......+..                ....+.++|+.|+..++.+++++|++.+......+..     ...+.|.
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~-----~~~~~g~  318 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA-----TIPGDAN  318 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC-----SSTTCCC
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccc-----cCCCCCC
Confidence              0  0000000000                0112347899999999999999999988754333211     1113489


Q ss_pred             chhHHHhhCCCHHHHHHHHHC
Q 010335          223 TPLHFAACGGNLKCCQVLLSR  243 (513)
Q Consensus       223 TpLh~Aa~~g~~eivk~LL~~  243 (513)
                      ||||+|++.|+.++|++||+.
T Consensus       319 T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         319 ELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHTCTTHHHHHTTS
T ss_pred             cHHHHHHHcCcHHHHHHHhCC
Confidence            999999999999999999963

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=3.8e-24  Score=198.15  Aligned_cols=185  Identities=28%  Similarity=0.326  Sum_probs=164.8

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCChHHHHHHHc
Q 010335           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD-VNSRNYCGQTALMQACRY   88 (513)
Q Consensus        10 ~~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gad-vn~~d~~g~TpLh~A~~~   88 (513)
                      +.++||+||+.|+.+++++|++.|++++.....+  .++++.++..++............. .......|.++.+.+...
T Consensus        23 G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (209)
T d1ot8a_          23 GETSLHLAARFARADAAKRLLDAGADANSQDNTG--RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL  100 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhhccccccccccc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence            5689999999999999999999999987655544  8999999999999888877765443 344556789999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHH
Q 010335           89 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS  168 (513)
Q Consensus        89 g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (513)
                      ....+.+.|+.++++++..+. .|.|||++|+..+..++++.|+..+..                               
T Consensus       101 ~~~~~~~~L~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~-------------------------------  148 (209)
T d1ot8a_         101 AIEGMVEDLITADADINAADN-SGKTALHWAAAVNNTEAVNILLMHHAN-------------------------------  148 (209)
T ss_dssp             TCTTHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCC-------------------------------
T ss_pred             cchhhhhhhhhhcccccccCC-CCCCcchhhcccCcceeeeeecccccc-------------------------------
Confidence            999999999999999998875 899999999999999999999976543                               


Q ss_pred             HhcccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHH
Q 010335          169 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  240 (513)
Q Consensus       169 ~~i~~~d~~G~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L  240 (513)
                        ++..|..|.||||+|+..|+.++|++|+++|+|++..|..          |.||||+|++.|+.++|++|
T Consensus       149 --~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~----------g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         149 --RDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHM----------DRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             --TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHH
T ss_pred             --ccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCCHHHHhhc
Confidence              5677889999999999999999999999999999999876          99999999999999999987

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3e-25  Score=218.90  Aligned_cols=42  Identities=36%  Similarity=0.459  Sum_probs=41.1

Q ss_pred             CCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH
Q 010335          221 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  262 (513)
Q Consensus       221 G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A~  262 (513)
                      |+||||+|++.|+.++|++|+++|||++.+|.+|+|||++|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999999999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.4e-24  Score=211.20  Aligned_cols=174  Identities=20%  Similarity=0.235  Sum_probs=121.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH-------HHHHHHHhcCCCCCcccCCCCCc
Q 010335           42 FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW-------EVVQTLLLFRCNVTRADYLSGRT  114 (513)
Q Consensus        42 ~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~-------eiVk~LL~~ga~~~~~~~~~G~T  114 (513)
                      +..|+||||+||..|++++|++||++|+|++.+|..|+||||+|+..++.       +++++|..   .+...+ ..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d-~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILED-SMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEEC-TTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcc-cccCC
Confidence            34569999999999999999999999999999999999999999987752       45555533   344444 38999


Q ss_pred             HHHHHHHcCC----HHH--------HHHHHHccCCCCccccchhh----hcccCCCCchhhhhhchhHHHHhcccccCCC
Q 010335          115 ALHFAAVNGH----VRC--------IRLVVADFVPSVPFEVMNTQ----IEGDRGDGSSVKSKCDQSALSKFVNKAADGG  178 (513)
Q Consensus       115 pLh~A~~~g~----~~i--------v~~Ll~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G  178 (513)
                      |||+++..+.    ..+        +.+++..+............    .......................+|.+|.+|
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G  259 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG  259 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCC
Confidence            9999887543    233        33343333221111110000    0000011111111112233445589999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCccccccCCCCchhHHHh
Q 010335          179 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  229 (513)
Q Consensus       179 ~TpLh~Aa~~g~~eiv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa  229 (513)
                      +||||+|+++|+.++|++|+++|+|++..|..          |.|||+||+
T Consensus       260 ~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~----------G~Tpl~~A~  300 (301)
T d1sw6a_         260 DTCLNIAARLGNISIVDALLDYGADPFIANKS----------GLRPVDFGA  300 (301)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTT----------SCCGGGGTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHcC
Confidence            99999999999999999999999999999977          999999997

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-24  Score=182.26  Aligned_cols=118  Identities=23%  Similarity=0.328  Sum_probs=66.8

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-hHHHHHHHcC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ-TALMQACRYG   89 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~-TpLh~A~~~g   89 (513)
                      .++||.|++.|++++|++|+++|.+++..+..+  .||||+|+ .|+.+++++|+++|++++.+|..+. ||||+|++.|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g--~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYG--RRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSS--CCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccc--cccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            345666666666666666666555554333322  55555443 4556666666666666655555543 3566666666


Q ss_pred             CHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 010335           90 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV  132 (513)
Q Consensus        90 ~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll  132 (513)
                      +.++|++|+++|++++..+. .|+||||+|+.+|+.+++++|+
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~-~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccccccC-CCCCHHHHHHHcCCHHHHHHHH
Confidence            66666666666666555553 5566666666666666665554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=179.33  Aligned_cols=93  Identities=28%  Similarity=0.242  Sum_probs=85.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV  125 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~  125 (513)
                      .++||+|+.+|++++|++|+++|+|+|.+|..|.||||+|+ .|+.++|++|+++|++++..+...+.||||+|+..|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            68999999999999999999999999999999999999775 79999999999999999988874556799999999999


Q ss_pred             HHHHHHHHccCCCC
Q 010335          126 RCIRLVVADFVPSV  139 (513)
Q Consensus       126 ~iv~~Ll~~~~~~~  139 (513)
                      +++++|++.+.+..
T Consensus        83 ~~v~~Ll~~ga~~~   96 (125)
T d1bi7b_          83 DTLVVLHRAGARLD   96 (125)
T ss_dssp             HHHHHHHHHTCCSS
T ss_pred             cccccccccccccc
Confidence            99999999876543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.4e-23  Score=177.56  Aligned_cols=106  Identities=30%  Similarity=0.427  Sum_probs=99.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHH
Q 010335          113 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  192 (513)
Q Consensus       113 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~e  192 (513)
                      .|||++|+++|+.++|++|++.+.+                                 ++..+..|+||||+|+.+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d---------------------------------~n~~~~~g~t~lh~A~~~~~~~   49 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED---------------------------------VNRTLEGGRKPLHYAADCGQLE   49 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC---------------------------------CCCCSSSSCCTTHHHHHHSTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc---------------------------------cccccccccccccccccccccc
Confidence            4799999999999999999987654                                 6778889999999999999999


Q ss_pred             HHHHHHHcCCCcccccccCCccccccCCCCchhHHHhhCCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 010335          193 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  261 (513)
Q Consensus       193 iv~~Ll~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad~~~~d~~G~TpL~~A  261 (513)
                      ++++|+++|++++..+..          |.||||+|+.+|+.++|++|+++|+|++.+|.+|+||||+|
T Consensus        50 ~~~~ll~~g~din~~d~~----------g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          50 ILEFLLLKGADINAPDKH----------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHSSCTTTCCSSS----------CSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             cccccccccceeeecccc----------cccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            999999999999999876          99999999999999999999999999999999999999998

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.5e-23  Score=176.04  Aligned_cols=121  Identities=22%  Similarity=0.229  Sum_probs=110.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 010335           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHW   91 (513)
Q Consensus        12 ~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~   91 (513)
                      +.|+.|++.|++++|++|+++|.+++..+..  |+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~--g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE--GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTT--SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccc--cccccccccccccccccccccccccccccccccCcccccccchhhHH
Confidence            5799999999999999999999998766554  48999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccCCCCCcHHHHH--HHcCCHHHHHHHHHc
Q 010335           92 EVVQTLLLFRCNVTRADYLSGRTALHFA--AVNGHVRCIRLVVAD  134 (513)
Q Consensus        92 eiVk~LL~~ga~~~~~~~~~G~TpLh~A--~~~g~~~iv~~Ll~~  134 (513)
                      ++|++|+++|++++..+...|.|+++++  ...|+.+++++|++.
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999988766788887765  577899999999853

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.1e-23  Score=178.10  Aligned_cols=107  Identities=31%  Similarity=0.363  Sum_probs=100.3

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 010335           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGH   90 (513)
Q Consensus        11 ~~~L~~Aa~~G~~e~vk~LL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~   90 (513)
                      .++|++|++.|++++|++|+++|++++.....+  +||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g--~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGG--RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSS--CCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccc--cccccccccccccccccccccccceeeecccccccchhhhhhcCc
Confidence            479999999999999999999999987665544  999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCcHHHHHH
Q 010335           91 WEVVQTLLLFRCNVTRADYLSGRTALHFAA  120 (513)
Q Consensus        91 ~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~  120 (513)
                      .++|++|+++|++++..+. +|.||||+|.
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~-~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGP-DGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSS-STCCCCCTCS
T ss_pred             hhhhhhhhcccccceeeCC-CCCCHHHHHh
Confidence            9999999999999998886 9999999983

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-22  Score=174.06  Aligned_cols=122  Identities=30%  Similarity=0.325  Sum_probs=108.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCH
Q 010335           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV  125 (513)
Q Consensus        46 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~g~TpLh~A~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~  125 (513)
                      .++||.|+..|++++|++|+++|+|+|.+|.+|.||||+|+..|+.+++++|+++|++++..+. +|+||||+|+.+|+.
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~-~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccc-cCcccccccchhhHH
Confidence            3689999999999999999999999999999999999999999999999999999999998886 999999999999999


Q ss_pred             HHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhccccc-CCCCcHHHHH--HHcCCHHHHHHHHHcC
Q 010335          126 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMA--ALNGYFDCVQLLLDLH  201 (513)
Q Consensus       126 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~G~TpLh~A--a~~g~~eiv~~Ll~~G  201 (513)
                      +++++|++++..                                 ++..+ ..|.|+++++  +.+|+.+++++|++.+
T Consensus        81 ~~v~~Ll~~ga~---------------------------------v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAA---------------------------------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCC---------------------------------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCC---------------------------------cccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999988764                                 33333 3477776654  6789999999999754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3.4e-21  Score=170.45  Aligned_cols=123  Identities=23%  Similarity=0.264  Sum_probs=110.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 010335           13 RLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQTALMQA   85 (513)
Q Consensus        13 ~L~~Aa~~G~~e~vk~LL~~~~~~~~~----~~~~~g~TpLh~Aa~~---g~~eivk~LL~~Gadvn~~d~~g~TpLh~A   85 (513)
                      .|+.|++.+|+..++.++..|.++...    .....|+||||+|+..   |+.++|++|+++|+++|.+|.+|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            578999999999999999998776532    2234468999999974   688999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHccC
Q 010335           86 CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV  136 (513)
Q Consensus        86 ~~~g~~eiVk~LL~~ga~~~~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~~~  136 (513)
                      +..|+.++|++|+++|++++..+. +|+||||+|+..|+.+++++|++.+.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccCccccccCC-CCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999998885 99999999999999999999997654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.4e-20  Score=163.21  Aligned_cols=125  Identities=22%  Similarity=0.261  Sum_probs=112.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCC------CCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCcccCCCCCcHHH
Q 010335           47 SPLHFAAAKGHNEIVALLLENGADVNSR------NYCGQTALMQACRY---GHWEVVQTLLLFRCNVTRADYLSGRTALH  117 (513)
Q Consensus        47 TpLh~Aa~~g~~eivk~LL~~Gadvn~~------d~~g~TpLh~A~~~---g~~eiVk~LL~~ga~~~~~~~~~G~TpLh  117 (513)
                      ..|+.|+..+++..+..++..|+|++..      +..|+||||+|++.   |+.++|++|+++|++++..+. .|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~-~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-TCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhh-hhccccc
Confidence            4567889999999999999999987754      67899999999974   689999999999999999886 8999999


Q ss_pred             HHHHcCCHHHHHHHHHccCCCCccccchhhhcccCCCCchhhhhhchhHHHHhcccccCCCCcHHHHHHHcCCHHHHHHH
Q 010335          118 FAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL  197 (513)
Q Consensus       118 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~G~TpLh~Aa~~g~~eiv~~L  197 (513)
                      +|+..|+.+++++|++.+.+                                 ++.+|..|.||||+|+.+|+.+++++|
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad---------------------------------~~~~d~~g~tpL~~A~~~~~~~i~~~L  133 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKAS---------------------------------IEIANESGETPLDIAKRLKHEHCEELL  133 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccccccCcc---------------------------------ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999987764                                 677889999999999999999999999


Q ss_pred             HHcCCCcc
Q 010335          198 LDLHANVS  205 (513)
Q Consensus       198 l~~Gadvn  205 (513)
                      ++.++...
T Consensus       134 ~~~~~~~~  141 (154)
T d1dcqa1         134 TQALSGRF  141 (154)
T ss_dssp             HHHHTTCC
T ss_pred             HHhCCCCC
Confidence            99876543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.3e-07  Score=68.36  Aligned_cols=52  Identities=27%  Similarity=0.615  Sum_probs=43.1

Q ss_pred             cccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeec
Q 010335          317 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  379 (513)
Q Consensus       317 ~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~  379 (513)
                      ...|.||++...+.+..+|||.+|..|...+....           ...||+||..|.+...+
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~-----------~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE-----------GQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTT-----------CCSCTTTCCCCCCCCCS
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHC-----------cCcCCCCCcCccCCcee
Confidence            45799999999999999999999999998876432           22599999999876654

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=97.91  E-value=2.5e-06  Score=62.53  Aligned_cols=50  Identities=32%  Similarity=0.696  Sum_probs=40.2

Q ss_pred             ccccchhhhcccce-EEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceee
Q 010335          316 DADTCAVCLERACT-VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  377 (513)
Q Consensus       316 ~~~~C~iC~~~~~~-v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~  377 (513)
                      ..+.|.||++.... ++..+|||.+|..|.........            .||+||..|..+.
T Consensus         4 ~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~------------~CP~CR~~i~~~~   54 (68)
T d1chca_           4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP------------TCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC------------STTTTCCCCCCEE
T ss_pred             CCCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCC------------cCCCCCcchHhhc
Confidence            46789999998754 56689999999999988875532            4999999987654

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.5e-05  Score=57.59  Aligned_cols=48  Identities=25%  Similarity=0.565  Sum_probs=35.9

Q ss_pred             ccccchhhhccc-----ceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          316 DADTCAVCLERA-----CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       316 ~~~~C~iC~~~~-----~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      +...|.||++..     ..+...+|||.+|..|...+..+.           +..||+||..|.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----------AGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-----------SSSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcC-----------cCCCCCCCcCcc
Confidence            457899998742     234667999999999999886542           125999998764

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.55  E-value=2.7e-05  Score=54.10  Aligned_cols=48  Identities=33%  Similarity=0.695  Sum_probs=35.6

Q ss_pred             cccccchhhhcccce---E-EeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          315 DDADTCAVCLERACT---V-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       315 ~~~~~C~iC~~~~~~---v-~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ++...|.||++....   + ...+|||.+|..|....-....            .||+||..|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~------------~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS------------TCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC------------SCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCC------------cCCCCCCEeE
Confidence            345679999986542   3 3447999999999988864421            4999998864

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=7.5e-06  Score=57.26  Aligned_cols=43  Identities=26%  Similarity=0.577  Sum_probs=35.2

Q ss_pred             ccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          318 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       318 ~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      -.|.||++...+.+..+|||.+|..|..    . +          ...||+||..|..
T Consensus         7 l~C~IC~~~~~~p~~lpCgH~fC~~Ci~----~-~----------~~~CP~Cr~~~~~   49 (56)
T d1bora_           7 LRCQQCQAEAKCPKLLPCLHTLCSGCLE----A-S----------GMQCPICQAPWPL   49 (56)
T ss_dssp             SSCSSSCSSCBCCSCSTTSCCSBTTTCS----S-S----------SSSCSSCCSSSSC
T ss_pred             CCCcccCcccCCCEEecCCCHHhHHHHH----c-C----------CCcCcCCCCcccC
Confidence            4899999999999999999999999962    1 1          2259999988754

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=2.8e-05  Score=59.34  Aligned_cols=47  Identities=23%  Similarity=0.540  Sum_probs=38.3

Q ss_pred             cccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          317 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       317 ~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      ...|.||++...+.+..+|||.+|..|........           ...||+||.++.
T Consensus        23 ~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-----------~~~CP~Cr~p~~   69 (86)
T d1rmda2          23 SISCQICEHILADPVETSCKHLFCRICILRCLKVM-----------GSYCPSCRYPCF   69 (86)
T ss_dssp             HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-----------CSBCTTTCCBCC
T ss_pred             CcCCccCCcchhcceecCCCChhhHHHHHHHHhhC-----------CCcCcccCCCCC
Confidence            45799999999999999999999999998765331           114999998764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=3.4e-05  Score=52.97  Aligned_cols=45  Identities=22%  Similarity=0.532  Sum_probs=33.1

Q ss_pred             cchhhhcccc----eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          319 TCAVCLERAC----TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       319 ~C~iC~~~~~----~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .|.||++...    .+...+|||.+|..|...+....           ...||+||.++.
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~-----------~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE-----------NGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTS-----------CCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhc-----------CCCCCccCCcCC
Confidence            5899998542    23445899999999998886442           225999998764

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=3.4e-05  Score=61.27  Aligned_cols=48  Identities=31%  Similarity=0.691  Sum_probs=37.7

Q ss_pred             ccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          318 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       318 ~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      -.|.||++.....+..+|||.+|..|...+......         ...||+||..+.
T Consensus        22 l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~---------~~~CP~Cr~~~~   69 (103)
T d1jm7a_          22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG---------PSQCPLCKNDIT   69 (103)
T ss_dssp             TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS---------SCCCTTTSCCCC
T ss_pred             cCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCC---------CCcCcCCCCcCC
Confidence            469999998888888899999999999877544321         125999998864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.88  E-value=0.00028  Score=52.63  Aligned_cols=61  Identities=11%  Similarity=0.133  Sum_probs=47.9

Q ss_pred             ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCcccc
Q 010335          316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDI  387 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~~~~  387 (513)
                      +.-.|.||.+-..+-+..+|||.+|..|........           ...||+|+..+..-...|...+|++
T Consensus         7 ~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~-----------~~~cP~~~~~l~~~~l~pN~~L~~~   67 (78)
T d1t1ha_           7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG-----------HKTCPKSQETLLHAGLTPNYVLKSL   67 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT-----------CCBCTTTCCBCSSCCCEECTTTHHH
T ss_pred             ccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHC-----------CCCCCcccccCCcccccchHHHHHH
Confidence            457799999999999899999999999998765332           1249999999887767777655543

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.0003  Score=56.56  Aligned_cols=51  Identities=25%  Similarity=0.657  Sum_probs=36.7

Q ss_pred             ccccchhhhcccc------------------eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccc
Q 010335          316 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  373 (513)
Q Consensus       316 ~~~~C~iC~~~~~------------------~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i  373 (513)
                      ..+.|.||++...                  .+...+|||.+|..|...+......       .+.+.||+||..+
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~-------~~~~~CP~CR~~~   92 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-------DGSLQCPSCKTIY   92 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-------SSCCBCTTTCCBS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCc-------CCCCccccccchh
Confidence            3467999997642                  3567899999999999887654321       1244699999755

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00024  Score=49.29  Aligned_cols=46  Identities=9%  Similarity=-0.009  Sum_probs=37.4

Q ss_pred             cchhhhcccceEEee-CCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCcccccee
Q 010335          319 TCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  376 (513)
Q Consensus       319 ~C~iC~~~~~~v~~~-~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~  376 (513)
                      .|.||++...+-+.. .|||.+|..|.........            .||+||..+..-
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~------------~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------------NDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------------BCTTTCCBCCGG
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc------------CCCccCCcCCHH
Confidence            589999988887766 5999999999999876532            499999876543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.0002  Score=53.71  Aligned_cols=58  Identities=9%  Similarity=-0.074  Sum_probs=44.4

Q ss_pred             ccccchhhhcccceEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCc
Q 010335          316 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  384 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~  384 (513)
                      +.-.|.||++-..+-+..+|||.+|..|........           ...||+||..+..-...|...+
T Consensus         6 ~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~-----------~~~cP~c~~~l~~~~l~pN~~L   63 (80)
T d2c2la2           6 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-----------GHFNPVTRSPLTQEQLIPNLAM   63 (80)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-----------CSSCTTTCCCCCGGGCEECHHH
T ss_pred             ccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcC-----------CccCCCccccccccccccHHHH
Confidence            456799999999988899999999999988865442           1249999998765555555433

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00015  Score=56.69  Aligned_cols=45  Identities=24%  Similarity=0.521  Sum_probs=34.3

Q ss_pred             cccchhhhcccceEE-eeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccce
Q 010335          317 ADTCAVCLERACTVA-AEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  375 (513)
Q Consensus       317 ~~~C~iC~~~~~~v~-~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~  375 (513)
                      .-.|.||++...+-+ ..+|||.+|..|...+...              .||+||..+..
T Consensus        22 ~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~--------------~CP~Cr~~~~~   67 (97)
T d1jm7b_          22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT--------------GCPVCYTPAWI   67 (97)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT--------------BCSSSCCBCSC
T ss_pred             cCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc--------------cccccCCcCch
Confidence            357999999887665 4589999999998655321              39999987654

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00066  Score=51.78  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=27.8

Q ss_pred             eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          329 TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       329 ~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .+...+|||.++..|.........            .||+||.+.+
T Consensus        51 ~~~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR~~~~   84 (88)
T d3dplr1          51 TVAWGVCNHAFHFHCISRWLKTRQ------------VCPLDNREWE   84 (88)
T ss_dssp             CEEEETTSCEEEHHHHHHHHTTCS------------BCSSSCSBCC
T ss_pred             CeEEccccCcccHHHHHHHHHHCC------------cCCCCCCccc
Confidence            467789999999999999976532            4999998754

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=96.56  E-value=0.00015  Score=52.66  Aligned_cols=46  Identities=20%  Similarity=0.517  Sum_probs=36.1

Q ss_pred             CCCCCcccccee-eecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhcccc
Q 010335          365 PCPLCRHGIVSF-TKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNR  421 (513)
Q Consensus       365 ~Cp~Cr~~i~~~-~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~  421 (513)
                      .||||...+... +.+|+ |           .||..|...--+....||+||.+|..-+
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H-----------~Fc~~Ci~~w~~~~~~CP~CR~~i~~~~   54 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLH-----------AFCYVCITRWIRQNPTCPLCKVPVESVV   54 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTE-----------EESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred             CCccCCcCccCCcEEeCCCC-----------cCcHHHHHHHHHhCCcCCCCCcchHhhc
Confidence            599999988654 44677 8           8999998665555779999999987543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00078  Score=46.57  Aligned_cols=42  Identities=21%  Similarity=0.490  Sum_probs=35.9

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .||||...+..-+.+|+ |           .||..|..   +....||+||.++.-+
T Consensus         8 ~C~IC~~~~~~p~~lpCgH-----------~fC~~Ci~---~~~~~CP~Cr~~~~~~   50 (56)
T d1bora_           8 RCQQCQAEAKCPKLLPCLH-----------TLCSGCLE---ASGMQCPICQAPWPLG   50 (56)
T ss_dssp             SCSSSCSSCBCCSCSTTSC-----------CSBTTTCS---SSSSSCSSCCSSSSCC
T ss_pred             CCcccCcccCCCEEecCCC-----------HHhHHHHH---cCCCcCcCCCCcccCC
Confidence            69999999999999997 8           89999964   3467899999998754

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00019  Score=53.67  Aligned_cols=49  Identities=20%  Similarity=0.434  Sum_probs=40.2

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCCCC-CCCCCCCCchhhccccccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKNRVAL  424 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~~~  424 (513)
                      .||||.....+.+.+|+ |           .||..|....-. ....||+||.+|.+.....
T Consensus        25 ~C~IC~~~~~~~~~~~CgH-----------~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~   75 (79)
T d1fbva4          25 LCKICAENDKDVKIEPCGH-----------LMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV   75 (79)
T ss_dssp             BCTTTSSSBCCEECSSSCC-----------EECHHHHHHHHHTTCCSCTTTCCCCCCCCCSS
T ss_pred             CCccCCCcCCCeEEeCCCC-----------eeeHHHHHHHHHHCcCcCCCCCcCccCCceee
Confidence            59999999999999988 8           899999865433 4567999999998765443

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.26  E-value=0.001  Score=45.73  Aligned_cols=43  Identities=19%  Similarity=0.451  Sum_probs=34.8

Q ss_pred             CCCCCCccccce---eeecC-C-CCccccccccccccCccccCCCCCCCCCCCCCchhh
Q 010335          364 IPCPLCRHGIVS---FTKLP-G-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEI  417 (513)
Q Consensus       364 ~~Cp~Cr~~i~~---~~~~~-~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~  417 (513)
                      ..||||..++..   ++.+| + |           .||..|...--+....||+||.+|
T Consensus         6 ~~C~ICl~~~~~~~~~~~l~~C~H-----------~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           6 VECAVCLAELEDGEEARFLPRCGH-----------GFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCTTTCCCCCTTSCCEECSSSCC-----------EECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCeEECccccCCCEEEEeCCCCC-----------cccHHHHHHHHHhCCcCCCCCCEe
Confidence            359999998853   55664 3 7           899999988777788999999876

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=95.51  E-value=0.0026  Score=44.44  Aligned_cols=51  Identities=16%  Similarity=0.369  Sum_probs=35.8

Q ss_pred             ccccccchhhhcccceEEeeCC-----CcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccc
Q 010335          314 SDDADTCAVCLERACTVAAEGC-----RHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  374 (513)
Q Consensus       314 ~~~~~~C~iC~~~~~~v~~~~C-----gh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~  374 (513)
                      .++...|.||++........+|     +|.++..|.........          ...||+||..+.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~----------~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR----------NTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT----------CSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCC----------CCCCcccCCeee
Confidence            3466889999986554444444     59999999998764421          225999998753

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0023  Score=50.20  Aligned_cols=45  Identities=27%  Similarity=0.575  Sum_probs=36.3

Q ss_pred             CCCCCccccceeeecCC-CCccccccccccccCccccCCC---CCCCCCCCCCchhhccc
Q 010335          365 PCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHT---RDAECESPACAPEIRKN  420 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~---~~~~~~~~~~~~~~~~~  420 (513)
                      .||||...+..-+.+|+ |           .||..|....   .+....||+||.++..+
T Consensus        23 ~CpIC~~~~~~pv~~~CgH-----------~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_          23 ECPICLELIKEPVSTKCDH-----------IFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (103)
T ss_dssp             SCSSSCCCCSSCCBCTTSC-----------CCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCccCchhCCeEEcCCCC-----------chhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence            49999999998888888 8           9999997543   33446899999988654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.00099  Score=50.39  Aligned_cols=48  Identities=19%  Similarity=0.427  Sum_probs=39.7

Q ss_pred             CCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC-CCCCCCCCchhhccccc
Q 010335          364 IPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKNRV  422 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~  422 (513)
                      ..||||......-+.+|+ |           .||..|...--+ ....||+||.++...-+
T Consensus        24 l~C~IC~~~~~~pv~~~CgH-----------~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l   73 (86)
T d1rmda2          24 ISCQICEHILADPVETSCKH-----------LFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (86)
T ss_dssp             TBCTTTCSBCSSEEECTTSC-----------EEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             cCCccCCcchhcceecCCCC-----------hhhHHHHHHHHhhCCCcCcccCCCCChhhc
Confidence            469999999999999999 9           999999876533 45689999999876654

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.00092  Score=47.76  Aligned_cols=46  Identities=22%  Similarity=0.475  Sum_probs=33.0

Q ss_pred             CCCCCccccc-----eeeecCC-CCccccccccccccCccccCCCC-CCCCCCCCCchhhcccc
Q 010335          365 PCPLCRHGIV-----SFTKLPG-SPVKDIKQPLSLGLCTPCMLHTR-DAECESPACAPEIRKNR  421 (513)
Q Consensus       365 ~Cp~Cr~~i~-----~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~-~~~~~~~~~~~~~~~~~  421 (513)
                      .||||...+.     .++..|+ |           .||..|....- +...+||+||.+++++-
T Consensus         5 ~CpIC~~~~~~~~~~~~~~~~C~H-----------~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           5 GCPRCKTTKYRNPSLKLMVNVCGH-----------TLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CCSTTTTHHHHCSSCCEEECTTCC-----------CEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCcCCceeecCCceEEEeCccCh-----------HhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            5999986542     2233455 8           99999986653 34568999999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0018  Score=43.86  Aligned_cols=44  Identities=25%  Similarity=0.509  Sum_probs=31.7

Q ss_pred             CCCCCccccce----eeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhcc
Q 010335          365 PCPLCRHGIVS----FTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRK  419 (513)
Q Consensus       365 ~Cp~Cr~~i~~----~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~  419 (513)
                      -||||...+..    ++.+++ |           .+|..|.....+. ...||+||.++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH-----------~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGY-----------QICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSC-----------CCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCC-----------ccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            39999887642    233344 7           8999998776553 5579999999864

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.01  Score=45.63  Aligned_cols=44  Identities=16%  Similarity=0.328  Sum_probs=34.2

Q ss_pred             CCCCCCccccceeeec-CC-CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          364 IPCPLCRHGIVSFTKL-PG-SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       364 ~~Cp~Cr~~i~~~~~~-~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      ..||||...+..=+.+ ++ |           .||..|....-  ...||.||.++...
T Consensus        23 l~C~IC~~~~~~pv~~~~CgH-----------~fC~~Ci~~~~--~~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          23 LRCSRCTNILREPVCLGGCEH-----------IFCSNCVSDCI--GTGCPVCYTPAWIQ   68 (97)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSC-----------CBCTTTGGGGT--TTBCSSSCCBCSCS
T ss_pred             CCCccCCchhhcCceeCCCCC-----------chhHHHHHHHH--hccccccCCcCchh
Confidence            3599999999887765 54 8           99999976553  45799999887653

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.21  E-value=0.0035  Score=43.09  Aligned_cols=50  Identities=6%  Similarity=0.033  Sum_probs=40.9

Q ss_pred             CCCCCccccceeeecC--CCCccccccccccccCccccCCCCCCCCCCCCCchhhcccccccc
Q 010335          365 PCPLCRHGIVSFTKLP--GSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALV  425 (513)
Q Consensus       365 ~Cp~Cr~~i~~~~~~~--~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (513)
                      .||||...+..=+.+|  |+           .||..|....-+....||+||.++...-+.++
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh-----------~fc~~cI~~~l~~~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRT-----------IFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTE-----------EEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred             CCccCCchHHhcCccCCCCC-----------cccHHHHHHHHhhccCCCccCCcCCHHhceeC
Confidence            4999999999987775  48           89999987765567789999999988766554

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.011  Score=45.05  Aligned_cols=51  Identities=20%  Similarity=0.406  Sum_probs=33.4

Q ss_pred             ccccchhhhcccc---eEEeeCCCcccchhhHhHhhccCCCCCCCCCCCCCCCCCCCc
Q 010335          316 DADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  370 (513)
Q Consensus       316 ~~~~C~iC~~~~~---~v~~~~Cgh~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr  370 (513)
                      ....|.||++...   .+...+|||.+|..|...........    +.-..+.||.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~----~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKE----GLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHH----CSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhc----CCccccCCcCCC
Confidence            4578999998753   24556899999999998765432110    011245799854

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.028  Score=43.15  Aligned_cols=57  Identities=9%  Similarity=-0.007  Sum_probs=43.8

Q ss_pred             ccccchhhhcccceEEeeCCCc-ccchhhHhHhhccCCCCCCCCCCCCCCCCCCCccccceeeecCCCCc
Q 010335          316 DADTCAVCLERACTVAAEGCRH-ELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  384 (513)
Q Consensus       316 ~~~~C~iC~~~~~~v~~~~Cgh-~~C~~C~l~l~~~~~~~~~~~~~~~~~~Cp~Cr~~i~~~~~~~~~~~  384 (513)
                      +.-.|.||.+-..+-+..+||| .+|..|........            ..||+||..+..-..+|...+
T Consensus        21 ~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~------------~~~P~~~~~l~~~~L~pN~~L   78 (98)
T d1wgma_          21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD------------QTDPFNRSPLTMDQIRPNTEL   78 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS------------CBCTTTCSBCCTTTSEECHHH
T ss_pred             HHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhc------------CCcccccccccchhhcchHHH
Confidence            4688999999999999988876 69999998875432            149999998776555666433

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.68  E-value=0.025  Score=41.35  Aligned_cols=51  Identities=12%  Similarity=0.112  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCCC-CCCCCCCchhhcccc
Q 010335          360 PPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAPEIRKNR  421 (513)
Q Consensus       360 ~~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~~  421 (513)
                      .|..-.||||..-+..=+.+++ +           .||..|...--+. ...||.|+.++....
T Consensus         5 iP~~l~CpIc~~~m~dPV~~~cgh-----------~fc~~ci~~~~~~~~~~cP~~~~~l~~~~   57 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIVSTGQ-----------TYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTE-----------EEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             CCccCCCcCcCchhhCceEccCCC-----------cchHHHHHHHHHHCCCCCCcccccCCccc
Confidence            4566789999999998888888 8           8999997654333 457999999887643

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.77  E-value=0.034  Score=40.87  Aligned_cols=49  Identities=6%  Similarity=-0.035  Sum_probs=38.4

Q ss_pred             CCCCCCCCCccccceeeecCC-CCccccccccccccCccccCCCCC-CCCCCCCCchhhccc
Q 010335          361 PGSIPCPLCRHGIVSFTKLPG-SPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIRKN  420 (513)
Q Consensus       361 ~~~~~Cp~Cr~~i~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~  420 (513)
                      |..-.||||..-+..=+.+|+ +           .||..|....-. ....||+||.++...
T Consensus         5 P~~l~CpIc~~l~~dPv~~~cGh-----------tfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           5 PDYLCGKISFELMREPCITPSGI-----------TYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCC-----------EEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CccccCcCcCchhhhhcccCCcC-----------eecHHHHHHHHhcCCccCCCcccccccc
Confidence            345579999999999888987 8           899999766433 345799999888654

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.031  Score=41.94  Aligned_cols=25  Identities=12%  Similarity=0.085  Sum_probs=19.6

Q ss_pred             ccCccccCCCCCCCCCCCCCchhhc
Q 010335          394 GLCTPCMLHTRDAECESPACAPEIR  418 (513)
Q Consensus       394 ~~c~~c~~~~~~~~~~~~~~~~~~~  418 (513)
                      .|+..|...--+..+.||+||.++.
T Consensus        60 ~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          60 AFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             cccHHHHHHHHHHCCcCCCCCCccc
Confidence            7888887665556788999999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.74  E-value=0.023  Score=44.96  Aligned_cols=27  Identities=15%  Similarity=0.347  Sum_probs=18.5

Q ss_pred             ccCccccCCCCC-----CCCCCCCCchhhccc
Q 010335          394 GLCTPCMLHTRD-----AECESPACAPEIRKN  420 (513)
Q Consensus       394 ~~c~~c~~~~~~-----~~~~~~~~~~~~~~~  420 (513)
                      .||..|....-+     ....||+||..+...
T Consensus        64 ~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          64 AFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             EECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             hhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            899999644321     134799999887543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.68  E-value=0.13  Score=39.15  Aligned_cols=50  Identities=8%  Similarity=0.047  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCccccceeeecCC--CCccccccccccccCccccCCCCCCCCCCCCCchhhccc
Q 010335          360 PPGSIPCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN  420 (513)
Q Consensus       360 ~~~~~~Cp~Cr~~i~~~~~~~~--~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~  420 (513)
                      .|..-.||||..-+..=+.+|+  +           .||..|...--.....||+|+.++...
T Consensus        19 ~P~~f~CPI~~~lm~dPV~~~~~~~-----------ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDPVVLPSSRV-----------TVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTTCC-----------EEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             CcHHhCCcCchhHHHHHHhcccccc-----------hhhHHHHHHHHHhcCCcccccccccch
Confidence            4556789999999999999985  5           689888877666677899999887653