Citrus Sinensis ID: 010342

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
Protein Sequence
MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLRI
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHcHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mdqlcglsrvgeAHKLFFDmksrghvpnvvsYTTLIHGYCRTGEMDVAYKVFDEmrhcgvlpnsltySVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIaedmpqgksvneefacGHMIDslcrsgrnhgaSRVVYVMRKrgltpslvsYNSIVHGLCKHGGCMRAYQLLEEGiqfgylpsehTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQtqcqpdvitLNTVINGFCKMGRIEEALKVLNDMvagkfcapdavtFTTIIFGLLNVGRIQEALNLLYQVmpqrgyspgivTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLcesnqldeakrfwddivwpsnihdnYVYAAMIKGLCRSGKIHEAVHFLYELVdsgvtpniVCYNVVIDGACKLSMKREAYQILREMRknglnpdaVTWRILDKlhgnrgndfglri
Flexible Loop (DISEMBL)
mdqlcglsRVGEAHKLFfdmksrghvpNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGvlpnsltysvlvrgvlrtrdveRANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFmlskkdvdrtRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRemrknglnpdaVTWRildklhgnrgndfglri
Low Complexity Region (SEG)
MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLRI
Disordered region (IsUnstruct)
****CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG**********
Disordered Region (DISOPRED)
MDQLC**SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLRI
Disordered Region (DISEMBL)
MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLRI
Disordered Region (DISPRO)
MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLRI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	512	2.2.26 [Sep-21-2011]
Q9LSK8	688	Pentatricopeptide repeat-	yes	no	0.937	0.697	0.634	0.0
Q9C8T7	559	Pentatricopeptide repeat-	no	no	0.900	0.824	0.280	1e-59
Q9SXD8	634	Pentatricopeptide repeat-	no	no	0.900	0.727	0.276	8e-59
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.951	0.814	0.274	2e-58
Q9LQ16	632	Pentatricopeptide repeat-	no	no	0.882	0.715	0.271	2e-57
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.882	0.718	0.273	3e-57
Q9CAN0	630	Pentatricopeptide repeat-	no	no	0.900	0.731	0.276	4e-57
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.925	0.649	0.290	8e-57
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.880	0.603	0.285	4e-56
Q9SXD1	630	Pentatricopeptide repeat-	no	no	0.882	0.717	0.275	5e-56

>sp|Q9LSK8|PP240_ARATH Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana GN=At3g18020 PE=2 SV=1

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/501 (63%), Positives = 393/501 (78%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+QLC + RV +AHKL FDM++RGH+P+VV++TTLI GYC   E++VA+KVFDEMR CG+
Sbjct: 169 MNQLCTIYRVIDAHKLVFDMRNRGHLPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGI 228

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNSLT SVL+ G L+ RDVE    LM +LWE MK E D S+  AAFANLVDS+CREGY 
Sbjct: 229 RPNSLTLSVLIGGFLKMRDVETGRKLMKELWEYMKNETDTSMKAAAFANLVDSMCREGYF 288

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N++F IAE+M   +SVN EFA GHMIDSLCR  RNHGA+R+VY+M+ +GL P   SYN+I
Sbjct: 289 NDIFEIAENMSLCESVNVEFAYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAI 348

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK GGCMRAYQLLEEG +F + PSE+TYK+L+E LC E D  KAR VL+ ML K+ 
Sbjct: 349 IHGLCKDGGCMRAYQLLEEGSEFEFFPSEYTYKLLMESLCKELDTGKARNVLELMLRKEG 408

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            DRTRI NIYLR LC++ NPTE+LNVLV MLQ  C+PD  TLNTVING CKMGR+++A+K
Sbjct: 409 ADRTRIYNIYLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMK 468

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL+DM+ GKFCAPDAVT  T++ GLL  GR +EAL++L +VMP+    PG+V YNAV+RG
Sbjct: 469 VLDDMMTGKFCAPDAVTLNTVMCGLLAQGRAEEALDVLNRVMPENKIKPGVVAYNAVIRG 528

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L + +EA  VF  +    V ADSTTYAI+IDGLC +N++D AK+FWDD++WPS  HD
Sbjct: 529 LFKLHKGDEAMSVFGQLEKASVTADSTTYAIIIDGLCVTNKVDMAKKFWDDVIWPSGRHD 588

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            +VYAA +KGLC+SG + +A HFLY+L DSG  PN+VCYN VI    +  +KREAYQIL 
Sbjct: 589 AFVYAAFLKGLCQSGYLSDACHFLYDLADSGAIPNVVCYNTVIAECSRSGLKREAYQILE 648

Query: 481 EMRKNGLNPDAVTWRILDKLH 501
           EMRKNG  PDAVTWRILDKLH
Sbjct: 649 EMRKNGQAPDAVTWRILDKLH 669

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2

 Score =  231 bits (588), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 250/503 (49%), Gaps = 42/503 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  L   M   G+ P++V+ ++L++GYC    +  A  + D+M   G  P+
Sbjct: 55  FCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 114

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++ +R  +      N   +  +V+ LC+ G ++  
Sbjct: 115 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP-----NLVTYGVVVNGLCKRGDIDLA 169

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M   K   +      +IDSLC+      A  +   M  +G+ P++V+Y+S++  
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A QLL + I+    P+  T+  L++    E    +A K+   M+ K+ +D 
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI-KRSID- 287

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T N++INGFC   R+++A ++  
Sbjct: 288 ---------------------------------PDIFTYNSLINGFCMHDRLDKAKQMFE 314

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+ K C PD  T+ T+I G     R+++   L ++ M  RG     VTY  +++GLF 
Sbjct: 315 FMVS-KDCFPDLDTYNTLIKGFCKSKRVEDGTEL-FREMSHRGLVGDTVTYTTLIQGLFH 372

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A++VF  M+  GV  D  TY+I++DGLC + +L++A   +D +       D Y+
Sbjct: 373 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 432

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN+V YN +I G C   + +EAY +L++M+
Sbjct: 433 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 492

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           ++G  PD+ T+  L + H   G+
Sbjct: 493 EDGPLPDSGTYNTLIRAHLRDGD 515

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1

 Score =  228 bits (581), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 249/503 (49%), Gaps = 42/503 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  L   M   G+ P++V+ ++L++GYC    +  A  + D+M   G  P+
Sbjct: 130 FCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 189

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++ +R  +      N   +  +V+ LC+ G  +  
Sbjct: 190 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP-----NLVTYGVVVNGLCKRGDTDLA 244

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M   K   +      +IDSLC+      A  +   M  +G+ P++V+Y+S++  
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A QLL + I+    P+  T+  L++    E    +A K+   M+ K+ +D 
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI-KRSID- 362

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T N+++NGFC   R+++A ++  
Sbjct: 363 ---------------------------------PDIFTYNSLVNGFCMHDRLDKAKQMFE 389

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+ K C PD VT+ T+I G     R+++   L ++ M  RG     VTY  +++GLF 
Sbjct: 390 FMVS-KDCFPDVVTYNTLIKGFCKSKRVEDGTEL-FREMSHRGLVGDTVTYTTLIQGLFH 447

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A++VF  M+  GV  D  TY+I++DGLC + +L++A   +D +       D Y+
Sbjct: 448 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 507

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN+V YN +I G C   + +EAY +L++M+
Sbjct: 508 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 567

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           ++G  P++ T+  L + H   G+
Sbjct: 568 EDGPLPNSGTYNTLIRAHLRDGD 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  227 bits (578), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 258/499 (51%), Gaps = 12/499 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q+     + E  K   +M   G+VP+++  TTLI G+CR G+   A K+ + +   G +P
Sbjct: 111 QMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TY+V++ G  +  ++  A      + +RM    D+      +  ++ SLC  G + +
Sbjct: 171 DVITYNVMISGYCKAGEINNA----LSVLDRMSVSPDV----VTYNTILRSLCDSGKLKQ 222

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCR-SGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              + + M Q     +      +I++ CR SG  H A +++  MR RG TP +V+YN +V
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGH-AMKLLDEMRDRGCTPDVVTYNVLV 281

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           +G+CK G    A + L +    G  P+  T+ +++  +C       A K+L  ML K   
Sbjct: 282 NGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI +  LC        +++L  M Q  CQP+ ++ N +++GFCK  +++ A++ 
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  MV+ + C PD VT+ T++  L   G++++A+ +L Q +  +G SP ++TYN V+ GL
Sbjct: 402 LERMVS-RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ-LSSKGCSPVLITYNTVIDGL 459

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  +  +A ++ + M    +  D+ TY+ ++ GL    ++DEA +F+ +        + 
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNA 519

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             + +++ GLC+S +   A+ FL  +++ G  PN   Y ++I+G     M +EA ++L E
Sbjct: 520 VTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNE 579

Query: 482 MRKNGLNPDAVTWRILDKL 500
           +   GL   +   ++  K+
Sbjct: 580 LCNKGLMKKSSAEQVAGKM 598

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 250/494 (50%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ P++V+ ++L++GYC +  +  A  + D+M   G  P+
Sbjct: 128 FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD 187

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + T++ L+ G+        A  L+ ++ +R   + DL      +  +V+ LC+ G ++  
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQR-GCQPDL----VTYGTVVNGLCKRGDIDLA 242

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M +GK   +      +ID LC+      A  +   M  +G+ P + +Y+S++  
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P+  T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRSID- 360

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T +++INGFC   R++EA K + 
Sbjct: 361 ---------------------------------PDIFTYSSLINGFCMHDRLDEA-KHMF 386

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  K C P+ VT++T+I G     R++E + L ++ M QRG     VTY  ++ G F+
Sbjct: 387 ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL-FREMSQRGLVGNTVTYTTLIHGFFQ 445

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            R  + A+ VF  M+ +GV  +  TY I++DGLC++ +L +A   ++ +   +   D Y 
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT 505

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV+PN++ YN +I G C+   K EA  +L++M+
Sbjct: 506 YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMK 565

Query: 484 KNGLNPDAVTWRIL 497
           ++G  P++ T+  L
Sbjct: 566 EDGPLPNSGTYNTL 579

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  223 bits (568), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 250/494 (50%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ P++V+ ++L++GYC    +  A  + D+M      PN
Sbjct: 125 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPN 184

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++  R  + +  +     +  +V+ LC+ G ++  
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT-----YGTVVNGLCKRGDIDLA 239

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M +GK   +      +ID+LC     + A  +   M  +G+ P++V+YNS++  
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P+  T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRSID- 357

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T +++INGFC   R++EA K + 
Sbjct: 358 ---------------------------------PDIFTYSSLINGFCMHDRLDEA-KHMF 383

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  K C P+ VT+ T+I G     R++E + L ++ M QRG     VTYN +++GLF+
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL-FREMSQRGLVGNTVTYNTLIQGLFQ 442

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A+++F  M+  GV  D  TY+I++DGLC+  +L++A   ++ +       D Y 
Sbjct: 443 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYT 502

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN++ Y  +I G C+  +K EA  + REM+
Sbjct: 503 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

Query: 484 KNGLNPDAVTWRIL 497
           ++G  P++ T+  L
Sbjct: 563 EDGTLPNSGTYNTL 576

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1

 Score =  223 bits (567), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 247/503 (49%), Gaps = 42/503 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ P++V+  +L++G+C    +  A  +  +M   G  P+
Sbjct: 126 FCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPD 185

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S T++ L+ G+ R      A  L+ ++  +   + DL      +  +V+ LC+ G ++  
Sbjct: 186 SFTFNTLIHGLFRHNRASEAVALVDRMVVK-GCQPDL----VTYGIVVNGLCKRGDIDLA 240

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M QGK          +ID+LC     + A  +   M  +G+ P++V+YNS++  
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P+  T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRSID- 358

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T +++INGFC   R++EA K + 
Sbjct: 359 ---------------------------------PDIFTYSSLINGFCMHDRLDEA-KHMF 384

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  K C P+ VT+ T+I G     R+ E + L ++ M QRG     VTY  ++ G F+
Sbjct: 385 ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL-FREMSQRGLVGNTVTYTTLIHGFFQ 443

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            R  + A+ VF  M+  GV+ D  TY+I++DGLC + +++ A   ++ +       D Y 
Sbjct: 444 ARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYT 503

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN+V Y  ++ G C+  +K EA  + REM+
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMK 563

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           + G  PD+ T+  L + H   G+
Sbjct: 564 EEGPLPDSGTYNTLIRAHLRDGD 586

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  221 bits (564), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 241/486 (49%), Gaps = 12/486 (2%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F+DM SR   P + ++  ++  +C   E+D A  +  +M   G +PNS+ Y  L+ 
Sbjct: 201 AANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIH 260

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            + +   V  A     +L E M     +  +   F +++  LC+   +NE  ++   M  
Sbjct: 261 SLSKCNRVNEA----LQLLEEMFLMGCVP-DAETFNDVILGLCKFDRINEAAKMVNRMLI 315

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                ++   G++++ LC+ GR   A  + Y + K    P +V +N+++HG   HG    
Sbjct: 316 RGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDD 371

Query: 193 AYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           A  +L + +  +G +P   TY  L+ G   E  +  A +VL  M +K          I +
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILV 431

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C +    E  NVL  M     +P+ +  N +I+ FCK  RI EA+++  +M   K C
Sbjct: 432 DGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM-PRKGC 490

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD  TF ++I GL  V  I+ AL LL  ++ + G     VTYN ++    R   ++EA+
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISE-GVVANTVTYNTLINAFLRRGEIKEAR 549

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++ N M+  G   D  TY  +I GLC + ++D+A+  ++ ++   +   N     +I GL
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGL 609

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           CRSG + EAV F  E+V  G TP+IV +N +I+G C+     +   + R+++  G+ PD 
Sbjct: 610 CRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDT 669

Query: 492 VTWRIL 497
           VT+  L
Sbjct: 670 VTFNTL 675

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  219 bits (558), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 146/511 (28%), Positives = 242/511 (47%), Gaps = 60/511 (11%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F +M      PNV +Y  LI G+C  G +DVA  +FD+M   G LPN +TY+ L+ 
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  + R ++      FKL   M  +  L  N  ++  +++ LCREG + EV  +  +M +
Sbjct: 249 GYCKLRKIDDG----FKLLRSMALK-GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                +E     +I   C+ G  H A  +   M + GLTPS+++Y S++H +CK G   R
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNR 363

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A + L++    G  P+E TY  LV+G   +  + +A +VL+ M                 
Sbjct: 364 AMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMN---------------- 407

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                                   P V+T N +ING C  G++E+A+ VL DM   K  +
Sbjct: 408 -------------------DNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDM-KEKGLS 447

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD V+++T++ G      + EAL +  + M ++G  P  +TY+++++G    RR +EA +
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKRE-MVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           ++  ML +G+  D  TY  +I+  C    L++A +  +++V    + D   Y+ +I GL 
Sbjct: 507 LYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVID---------------GACKLSMKREAYQ 477
           +  +  EA   L +L      P+ V Y+ +I+               G C   M  EA Q
Sbjct: 567 KQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQ 626

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGN-RGND 507
           +   M      PD   + I+  +HG+ R  D
Sbjct: 627 VFESMLGKNHKPDGTAYNIM--IHGHCRAGD 655

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2

 Score =  219 bits (557), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 245/494 (49%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ PN+V+ ++L++GYC +  +  A  + D+M   G  PN
Sbjct: 126 FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN 185

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++  +   + DL      +  +V+ LC+ G  +  
Sbjct: 186 TVTFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDL----VTYGVVVNGLCKRGDTDLA 240

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M QGK          +ID LC+      A  +   M  +G+ P++V+Y+S++  
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P   T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV-KRSID- 358

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            P ++T +++INGFC   R++EA ++  
Sbjct: 359 ---------------------------------PSIVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+ K C PD VT+ T+I G     R++E + + ++ M QRG     VTYN +++GLF+
Sbjct: 386 FMVS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEV-FREMSQRGLVGNTVTYNILIQGLFQ 443

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A+E+F  M+  GV  +  TY  ++DGLC++ +L++A   ++ +         Y 
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV P++V YN +I G C+   K EA  + +EM+
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 484 KNGLNPDAVTWRIL 497
           ++G  P++  +  L
Sbjct: 564 EDGTLPNSGCYNTL 577

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
297742922	912	unnamed protein product [Vitis vinifera]	0.878	0.493	0.718	0.0
225441965	680	PREDICTED: pentatricopeptide repeat-cont	0.878	0.661	0.718	0.0
255577348	678	pentatricopeptide repeat-containing prot	0.978	0.738	0.707	0.0
224135537	668	predicted protein [Populus trichocarpa]	0.986	0.755	0.695	0.0
147855454	959	hypothetical protein VITISV_027500 [Viti	0.960	0.513	0.709	0.0
449497581	681	PREDICTED: pentatricopeptide repeat-cont	0.826	0.621	0.673	0.0
449439559	646	PREDICTED: pentatricopeptide repeat-cont	0.837	0.664	0.669	0.0
356566730	650	PREDICTED: pentatricopeptide repeat-cont	0.851	0.670	0.646	0.0
297830438	689	pentatricopeptide repeat-containing prot	0.929	0.690	0.646	0.0
357506233	737	Pentatricopeptide repeat-containing prot	0.812	0.564	0.645	0.0

>gi|297742922|emb|CBI35789.3| unnamed protein product [Vitis vinifera]

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/505 (71%), Positives = 431/505 (85%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + QLC  S+  EAH LFFDM+SRGH PN VSYTTLI GYC+ GE   A+K+FDEM   GV
Sbjct: 407 IHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEMLESGV 466

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PNSLTYSVL++GVL  RDVER   LM KLW++M +E D SVNNAAFANL+DSLC+EG+ 
Sbjct: 467 VPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFF 526

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVFRIAEDMPQGKSV+EEF  G MIDSLCR GRNHGASR+VY+MRKRG  PSLVSYN I
Sbjct: 527 LEVFRIAEDMPQGKSVSEEFVYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYI 586

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           VHGL K GGCMRAYQLL+EG++FGY+ SEHTYKVL+E LC ++DL KAR+V+Q ML+K+ 
Sbjct: 587 VHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEG 646

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD+TRI NIYLRALCL+ NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR+EEALK
Sbjct: 647 VDQTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALK 706

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL+DMV GKFCAPD+VT+TTII GLLN+GR +EAL++L +VMP++G+ PG+VT+NAVL G
Sbjct: 707 VLDDMVMGKFCAPDSVTYTTIICGLLNLGRTEEALDVLRRVMPEKGFKPGVVTFNAVLHG 766

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L++   A EVFN M+  GV A++ TY I+IDGL ES+Q+DEAKRFWDD++WPS +HD
Sbjct: 767 LFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPSKVHD 826

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N+VYAA++KGLCRSGK++EA  FLYELVD GVT N+V YN++ID ACKL  KREAY I++
Sbjct: 827 NFVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQ 886

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           EM+KNGL PDAVTWRIL KLHGN G
Sbjct: 887 EMKKNGLTPDAVTWRILHKLHGNVG 911

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441965|ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18020-like [Vitis vinifera]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/505 (71%), Positives = 431/505 (85%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + QLC  S+  EAH LFFDM+SRGH PN VSYTTLI GYC+ GE   A+K+FDEM   GV
Sbjct: 175 IHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEMLESGV 234

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PNSLTYSVL++GVL  RDVER   LM KLW++M +E D SVNNAAFANL+DSLC+EG+ 
Sbjct: 235 VPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFF 294

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVFRIAEDMPQGKSV+EEF  G MIDSLCR GRNHGASR+VY+MRKRG  PSLVSYN I
Sbjct: 295 LEVFRIAEDMPQGKSVSEEFVYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYI 354

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           VHGL K GGCMRAYQLL+EG++FGY+ SEHTYKVL+E LC ++DL KAR+V+Q ML+K+ 
Sbjct: 355 VHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEG 414

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD+TRI NIYLRALCL+ NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR+EEALK
Sbjct: 415 VDQTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALK 474

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL+DMV GKFCAPD+VT+TTII GLLN+GR +EAL++L +VMP++G+ PG+VT+NAVL G
Sbjct: 475 VLDDMVMGKFCAPDSVTYTTIICGLLNLGRTEEALDVLRRVMPEKGFKPGVVTFNAVLHG 534

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L++   A EVFN M+  GV A++ TY I+IDGL ES+Q+DEAKRFWDD++WPS +HD
Sbjct: 535 LFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPSKVHD 594

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N+VYAA++KGLCRSGK++EA  FLYELVD GVT N+V YN++ID ACKL  KREAY I++
Sbjct: 595 NFVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQ 654

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           EM+KNGL PDAVTWRIL KLHGN G
Sbjct: 655 EMKKNGLTPDAVTWRILHKLHGNVG 679

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577348|ref|XP_002529554.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530966|gb|EEF32823.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/502 (70%), Positives = 420/502 (83%), Gaps = 1/502 (0%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q C  S+   AH+L FDM SRGH PNVV++T+L+ GYCR GE+  AYK+FDEMR C V+P
Sbjct: 174 QCCEFSQPDVAHRLLFDMISRGHCPNVVTFTSLLTGYCRVGEVGNAYKLFDEMRECSVVP 233

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE-DLSVNNAAFANLVDSLCREGYVN 121
           NSLTYSVL+RG+LR  D E    LM  LWE MK+EE + SVN AAF N++DSLCREG++N
Sbjct: 234 NSLTYSVLIRGLLRQGDFEHGRELMCNLWETMKDEEKNQSVNAAAFVNVIDSLCREGFLN 293

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +VF+IAEDMPQGKSVN+EFA  HMIDSLCR+G+NHGASR+VY+M+K+GLTPSLVSYNSI+
Sbjct: 294 DVFKIAEDMPQGKSVNQEFAYAHMIDSLCRAGKNHGASRIVYMMKKKGLTPSLVSYNSII 353

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HGLCK  GCMRAYQL EEGI+FGYLPSE+TYKVLVE LC E DL+KAR++++ ML+K  V
Sbjct: 354 HGLCKERGCMRAYQLFEEGIEFGYLPSEYTYKVLVEALCQEMDLDKARRIVEAMLNKDGV 413

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           DRTRI NIYLRALCL  + TELLNVLV MLQT+CQPDVITLNTV+NGFCKM RIEEAL +
Sbjct: 414 DRTRIYNIYLRALCLTNSATELLNVLVSMLQTECQPDVITLNTVVNGFCKMHRIEEALTI 473

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L DM  GKFCAPDAVTFTTII GLLN GR QEALNLLY+VM ++G SPG+ TYNAV+ GL
Sbjct: 474 LTDMTMGKFCAPDAVTFTTIIAGLLNAGRSQEALNLLYKVMHEKGISPGVETYNAVIHGL 533

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F+L+  EEA   F  ML  GV ADS TY ++IDGLCES  +D+AK+ WDD++WPS IHD+
Sbjct: 534 FKLQLAEEAMRAFKRMLAAGVAADSKTYTLIIDGLCESGLIDKAKKLWDDVIWPSRIHDD 593

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           +VYA+++KGLCR+GK+ EA HFLYELVDSGV+PNI+ YN+VID ACKL MKREAYQ++ E
Sbjct: 594 FVYASILKGLCRAGKLDEACHFLYELVDSGVSPNIISYNIVIDSACKLGMKREAYQVVTE 653

Query: 482 MRKNGLNPDAVTWRILDKLHGN 503
           MRKNGL PDAVTWRILDKLH  
Sbjct: 654 MRKNGLTPDAVTWRILDKLHAT 675

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135537|ref|XP_002322098.1| predicted protein [Populus trichocarpa] gi|222869094|gb|EEF06225.1| predicted protein [Populus trichocarpa]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/506 (69%), Positives = 425/506 (83%), Gaps = 1/506 (0%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +DQ C +S    AH++ +DM +RGH P++VSYTTL++GY + GE+  AYK+FDEM   GV
Sbjct: 164 IDQFCSVSLPNVAHRMLYDMINRGHCPSIVSYTTLVNGYSKIGEISDAYKLFDEMPEWGV 223

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PNSL+YS+L+RGVLR RD+ER   LM  L++RM+ EED SVN+AAF NLVD LCREG  
Sbjct: 224 VPNSLSYSLLIRGVLRKRDIERGRELMHVLFQRMRHEEDQSVNSAAFDNLVDCLCREGLF 283

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NEVF IAE+MPQG  VNE+FA GH+IDSLC+ GR+HGASRVVY+MRK+G TPS+VSYNSI
Sbjct: 284 NEVFMIAEEMPQGNRVNEDFAYGHLIDSLCKVGRSHGASRVVYIMRKKGFTPSVVSYNSI 343

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK GGCMRAYQLLEEG+ FGYL SE+TYKVLVE LC   DL+KAR+VL+ ML+K  
Sbjct: 344 IHGLCKEGGCMRAYQLLEEGVGFGYLLSEYTYKVLVEALCQAMDLDKAREVLKVMLNKGG 403

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +DRTRI NIYLRALCL+ NPTELLNVLV MLQT CQPDVITLNTVINGFCKMGR+EEALK
Sbjct: 404 MDRTRIYNIYLRALCLMNNPTELLNVLVSMLQTNCQPDVITLNTVINGFCKMGRVEEALK 463

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VLNDM+ GKF APDAVTFT+II GLLNVGR QEA NLL Q++ ++G +PG+VTYNA+LRG
Sbjct: 464 VLNDMMTGKFSAPDAVTFTSIISGLLNVGRSQEARNLLLQML-EKGITPGVVTYNAILRG 522

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L+  +EA  VF+ M+  GV A+S TY+I+++GLCES Q+D AK+FWD+++WPS IHD
Sbjct: 523 LFKLQLTKEAMAVFDEMITDGVAANSQTYSIIVEGLCESGQIDGAKKFWDEVIWPSKIHD 582

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           ++VYAA++KGLCRSG ++EA+HFLYELVDSGV PNIV YN+VID AC L MKREAYQI  
Sbjct: 583 DFVYAAILKGLCRSGHLNEAIHFLYELVDSGVNPNIVSYNIVIDRACSLGMKREAYQIAG 642

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM+KNGL PDAVTWR LDKLHG   N
Sbjct: 643 EMQKNGLTPDAVTWRTLDKLHGQVKN 668

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855454|emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 420/503 (83%), Gaps = 11/503 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QLC  S+  EAH LFFDM+SRGH PN VSYTTLI GYC+ GE   A+K+FDEM   GV+P
Sbjct: 467 QLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEMLESGVVP 526

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           NSLTYSVL++GVL  RDVER   LM KLW++M +E D SVNNAAFANL+DSLC+EG+  E
Sbjct: 527 NSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFFLE 586

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           VFRIAEDMPQGKSV+EEFA G MIDSLCR GRNHGASR+VY+MRKRG  PSLVSYN IVH
Sbjct: 587 VFRIAEDMPQGKSVSEEFAYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYIVH 646

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL K GGCMRAYQLL+EG++FGY+ SEHTYKVL+E LC ++DL KAR+V+Q ML+K+ VD
Sbjct: 647 GLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVD 706

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           +TRI NIYLRALCL+ NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR+EEALKVL
Sbjct: 707 QTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALKVL 766

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +DMV GKFCAPD+VT+TTII GLLN+GR  EAL++L +VMP++           VL GLF
Sbjct: 767 DDMVMGKFCAPDSVTYTTIICGLLNLGRTAEALDVLRRVMPEK-----------VLHGLF 815

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +L++   A EVFN M+  GV A++ TY I+IDGL ES+Q+DEAKRFWDD++WPS +HDN+
Sbjct: 816 KLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPSKVHDNF 875

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           VYAA++KGLCRSGK++EA  FLYELVD GVT N+V YN++ID ACKL  KREAY I++EM
Sbjct: 876 VYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQEM 935

Query: 483 RKNGLNPDAVTWRILDKLHGNRG 505
           +KNGL PDAVTWRIL KLHGN G
Sbjct: 936 KKNGLTPDAVTWRILHKLHGNVG 958

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497581|ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18020-like [Cucumis sativus]

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/506 (67%), Positives = 405/506 (80%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +DQ C  S    AH++ FDMKSRGH PNVVSYT LI GYCR   +  A K+FDEM    V
Sbjct: 168 IDQFCSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYV 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNSLTYSVL+ G L  RD E    L+  LWERMK E D SVNNAAFA+LVDSLC  G  
Sbjct: 228 EPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSF 287

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +EVF IAEDMPQG+SV EEFA G MIDSLC++ R HGASR+VY+MRK+GL P L+SYNSI
Sbjct: 288 HEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSI 347

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL K GGCMRAYQLL EG++FGY PSEHTYKVL+EGLC E D +KA++VLQ M+ K+ 
Sbjct: 348 IHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMIHKQG 407

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VDRTRI NIYLRA+CL  N TELLN LV MLQT CQPDVITLNTVI GFCK+G IEEALK
Sbjct: 408 VDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALK 467

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VLNDM+ GKFC PD VTFTTIIFGLLNVGRI+E+L++LY+VMP++G  PG++TYNA +RG
Sbjct: 468 VLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATIRG 527

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L++  +A   F+ M+  G+ ADSTTYA+VIDGLC+ NQ++E KRFW DIVWPS IHD
Sbjct: 528 LFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEEVKRFWKDIVWPSKIHD 587

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           ++VY+A++KGLC S K +EA HFLYEL DSGV+P I CYN+VI+ ACKL +K EAY++++
Sbjct: 588 SFVYSAILKGLCHSSKFNEACHFLYELSDSGVSPTIFCYNIVINTACKLGLKGEAYRLVK 647

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EMRKNGL PDAVTWRIL KLH N  +
Sbjct: 648 EMRKNGLAPDAVTWRILHKLHQNETD 673

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439559|ref|XP_004137553.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18020-like [Cucumis sativus]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/512 (66%), Positives = 408/512 (79%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +DQ C  S    AH++ FDMKSRGH PNVVSYT LI GYCR   +  A K+FDEM    V
Sbjct: 135 IDQFCSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYV 194

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNSLTYSVL+ G L  RD E    L+  LWERMK E D SVNNAAFA+LVDSLC  G  
Sbjct: 195 EPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSF 254

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +EVF IAEDMPQG+SV EEFA G MIDSLC++ R HGASR+VY+MRK+GL P L+SYNSI
Sbjct: 255 HEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSI 314

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL K GGCMRAYQLL EG++FGY PSEHTYKVL+EGLC E D +KA++VLQ M+ K+ 
Sbjct: 315 IHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMIHKQG 374

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VDRTRI NIYLRA+CL  N TELLN LV MLQT CQPDVITLNTVI GFCK+G IEEALK
Sbjct: 375 VDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALK 434

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VLNDM+ GKFC PD VTFTTIIFGLLNVGRI+E+L++LY+VMP++G  PG++TYNA +RG
Sbjct: 435 VLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATIRG 494

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L++  +A   F+ M+  G+ ADSTTYA+VIDGLC+ NQ++E KRFW DIVWPS IHD
Sbjct: 495 LFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEEVKRFWKDIVWPSKIHD 554

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           ++VY+A++KGLC S K +EA HFLYEL DSGV+P I CYN+VI+ ACKL +K EAY++++
Sbjct: 555 SFVYSAILKGLCHSSKFNEACHFLYELSDSGVSPTIFCYNIVINTACKLGLKGEAYRLVK 614

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDFGLRI 512
           EMRKNGL PDAVTWRIL KLH N  ++   RI
Sbjct: 615 EMRKNGLAPDAVTWRILHKLHQNETDNPLPRI 646

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566730|ref|XP_003551582.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18020-like [Glycine max]

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/507 (64%), Positives = 408/507 (80%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MDQ CG     +AH+LFFDM++RGH PNVVS+TTLI+GYC    M  A KVFDEM   GV
Sbjct: 126 MDQFCGAHLPRDAHRLFFDMRNRGHCPNVVSFTTLINGYCSVRAMRDARKVFDEMLESGV 185

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS+TYSVL+ GVLR RD+E    LM +LWERM  E + SV  AAFANLVDSLCREG+ 
Sbjct: 186 EPNSVTYSVLIGGVLRERDLEGGRELMCRLWERMSVEVEDSVKTAAFANLVDSLCREGFF 245

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVFRIAE++P G   +EE + G M+DSLCR GR +GA+R+VY++RKRG  PS VSYN +
Sbjct: 246 GEVFRIAEELPFGSCFSEEVSYGQMVDSLCRVGRYNGAARIVYLVRKRGFVPSDVSYNHV 305

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL + G CMRAYQLLEEG +FG++ SEHTYKVLVE LC   D++KAR+VL+ ML K+ 
Sbjct: 306 IHGLSRDGDCMRAYQLLEEGAEFGFMLSEHTYKVLVEALCHVMDVDKAREVLKLMLRKEG 365

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD+TRI NIYLRALC + NPTELLNVLVFML++QCQ DVITLNTVINGFCKMGR++EA K
Sbjct: 366 VDKTRIYNIYLRALCFVNNPTELLNVLVFMLESQCQADVITLNTVINGFCKMGRVDEASK 425

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL+DM+AGKF APD VTFTT+I G+L+  R+ EAL+L ++VMP+ G  P +VTYNA+LRG
Sbjct: 426 VLHDMLAGKFAAPDVVTFTTVISGMLDAARVDEALDLFHKVMPENGLRPSVVTYNALLRG 485

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L+RV +A   FN M+  G+ ADSTTY +V++GLCES+Q++EAK FW +++WPS +HD
Sbjct: 486 LFKLKRVSDALMAFNNMVSEGITADSTTYTVVVEGLCESDQVEEAKSFWHNVIWPSGVHD 545

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N+VYAA++KGLC SGK++EA HFLYELVDSG++PNI  YN++I+ AC L +K EAYQI+R
Sbjct: 546 NFVYAAILKGLCHSGKLNEACHFLYELVDSGISPNIFSYNILINCACNLGLKIEAYQIVR 605

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGND 507
           EM+KNGL PD+VTWRILDKLHG    D
Sbjct: 606 EMKKNGLTPDSVTWRILDKLHGKVRKD 632

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830438|ref|XP_002883101.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328941|gb|EFH59360.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/501 (64%), Positives = 401/501 (80%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++QLC + RV +AHKL FDM++RGH+PNVV++TTLI GYC   E++VA+KVFDEMR CG+
Sbjct: 169 INQLCLIYRVIDAHKLVFDMRNRGHLPNVVTFTTLIGGYCEIRELEVAHKVFDEMRGCGI 228

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNSLT SVL+ G  + RDVE    LM +LWE MK+E D S+  AAFANLVDS+CREGY 
Sbjct: 229 RPNSLTMSVLIGGFFKMRDVETGRKLMKELWEYMKDEADTSMKTAAFANLVDSMCREGYF 288

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N++F IAE+MPQ +SVN EF+ GHMIDSLCR  RNHGA+R+VY+M+ +GL P   SYN+I
Sbjct: 289 NDIFEIAENMPQCESVNVEFSYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAI 348

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK GGCMRAYQLLEEG +FG+ PSE+TYK+LVE LC E D  K R VL+ ML K+ 
Sbjct: 349 IHGLCKDGGCMRAYQLLEEGSEFGFFPSEYTYKLLVESLCRELDTGKTRNVLELMLRKEG 408

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            DRTRI NIYLRALC++ NPTE+LNVLV MLQ  C PD  TLNTV+NGFCKMGR+++A+K
Sbjct: 409 TDRTRIYNIYLRALCVMDNPTEILNVLVSMLQGDCSPDEYTLNTVVNGFCKMGRVDDAMK 468

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL DM+ GKFCAPDAVT TT++ GLL+ GR +EAL++L +VMP++   PG+VTYNAV+RG
Sbjct: 469 VLGDMMTGKFCAPDAVTLTTVMCGLLSQGRAEEALDVLNRVMPEKKIKPGVVTYNAVIRG 528

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L + +EA  VF+ +    V ADSTTYAI+IDGLC ++Q+D AK+FWDD++WPS  HD
Sbjct: 529 LFKLNKGDEAMCVFDQLEKASVTADSTTYAIIIDGLCVTSQVDMAKKFWDDVIWPSGRHD 588

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            +VYAA +KGLCRSG + +A HFLY+L DSG  PN+VCYN VID   +  +KREAYQIL 
Sbjct: 589 VFVYAAFLKGLCRSGYLSDACHFLYDLADSGAIPNVVCYNTVIDECSRSGLKREAYQILE 648

Query: 481 EMRKNGLNPDAVTWRILDKLH 501
           EMRKNG  PDAVTWRILDKLH
Sbjct: 649 EMRKNGQAPDAVTWRILDKLH 669

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506233|ref|XP_003623405.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498420|gb|AES79623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/502 (64%), Positives = 394/502 (78%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C + R  +AH+LFFDMK+RGH PNVVSYTTLI+GYC  G +  A KVFDEM   G+
Sbjct: 117 MDHFCFIHRPFDAHRLFFDMKNRGHCPNVVSYTTLINGYCSVGGIRDAMKVFDEMLESGL 176

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS+TYSVL+RG LR RD E    LM KLWERMK E++LSVN AAFANL+DSLC+EG+ 
Sbjct: 177 EPNSMTYSVLIRGFLRGRDFESGRELMCKLWERMKMEDELSVNVAAFANLIDSLCKEGFF 236

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NEVF IAE MP G S+ E+   G MIDS C+ GR HGA+R+VY+MRKR   PS VSYN I
Sbjct: 237 NEVFEIAELMPCGSSLPEQVVYGQMIDSFCKVGRYHGAARIVYLMRKRRFVPSDVSYNHI 296

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL K G CMR YQLLEEG +FG+   EHTYKVLVE LC   D++KAR+VL+ ML K+ 
Sbjct: 297 IHGLSKDGDCMRGYQLLEEGAEFGFSLCEHTYKVLVEALCRVLDVDKAREVLKLMLYKEG 356

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD+TRI NIYLRALC + NPTELLNVLVFML++ CQ DVITLNTVINGFCKMGR +EALK
Sbjct: 357 VDKTRIYNIYLRALCHVNNPTELLNVLVFMLESHCQTDVITLNTVINGFCKMGRFDEALK 416

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VLNDM+ GKFCAPD VTFTT+I GLL+  ++ EAL+L  +VMP+ G  PG+VTYN ++R 
Sbjct: 417 VLNDMLLGKFCAPDVVTFTTLISGLLDAEKVDEALDLFNRVMPENGLKPGVVTYNVLIRC 476

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L++L+R  +A EVFN M G G+  DSTTY ++++GLCE +Q++EAK FW  ++WPS IHD
Sbjct: 477 LYKLKRPNDAFEVFNNMAGDGITPDSTTYTVIVEGLCECDQIEEAKSFWQSVIWPSGIHD 536

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N+VYAA++KGLC SGK +EA HFLYELVDSG++PNI  YN++I+ AC L +KRE YQI+R
Sbjct: 537 NFVYAAILKGLCSSGKFNEACHFLYELVDSGISPNIYSYNILINCACNLGLKREVYQIVR 596

Query: 481 EMRKNGLNPDAVTWRILDKLHG 502
           EM KNG+ PD VTWRIL KL  
Sbjct: 597 EMNKNGVAPDCVTWRILHKLQS 618

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSK8	PP240_ARATH	No assigned EC number	0.6347	0.9375	0.6976	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033990001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (674 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	512
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-18
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-17
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-12
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-12
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	7e-12
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-11
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-10
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-09
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-08
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	9e-08
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-07
pfam01535	31	pfam01535, PPR, PPR repeat	3e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	7e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-05
pfam01535	31	pfam01535, PPR, PPR repeat	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-04
pfam01535	31	pfam01535, PPR, PPR repeat	7e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 88/426 (20%), Positives = 168/426 (39%), Gaps = 62/426 (14%)

Query: 89  KLWERMKEEEDLS---VNNAAFANLVDSLCR-EGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            L E M++   L    + +A F       C+ +  V E FR A+ +      N   +  +
Sbjct: 391 DLLEDMEKRGLLDMDKIYHAKFFKA----CKKQRAVKEAFRFAKLIR-----NPTLSTFN 441

Query: 145 MIDSLCRSGRN-HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           M+ S+C S ++  GA RV+ ++++ GL      Y +++    K G     +++  E +  
Sbjct: 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTE 262
           G   + HT+  L++G      + KA      M SK    DR  + N  + A         
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV-VFNALISACGQSGAVDR 560

Query: 263 LLNVLVFML--QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-------------VA 307
             +VL  M        PD IT+  ++      G+++ A +V   +             +A
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620

Query: 308 GKFC---------------------APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
              C                      PD V F+ ++    + G + +A  +L Q   ++G
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL-QDARKQG 679

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
              G V+Y++++      +  ++A E++  +  I +    +T   +I  LCE NQL +A 
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739

Query: 407 RFWDDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
               ++    + P+ I     Y+ ++    R       +  L +  + G+ PN+V    +
Sbjct: 740 EVLSEMKRLGLCPNTI----TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795

Query: 463 IDGACK 468
             G C 
Sbjct: 796 T-GLCL 800

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 74.0 bits (183), Expect = 6e-17
 Identities = 24/47 (51%), Positives = 36/47 (76%)

Query: 27 PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
          P+VV+Y TLI GYC+ G+++ A K+F+EM+  G+ PN  TYS+L+ G
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 89/370 (24%), Positives = 164/370 (44%), Gaps = 22/370 (5%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++  G   +   YTTLI    ++G++D  ++VF EM + GV  N  T+  L+ G  R   
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522

Query: 80  VERANVLMFKLWERM---KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKS 135
           V +A    F  +  M     + D  V NA    L+ +  + G V+  F +  +M  +   
Sbjct: 523 VAKA----FGAYGIMRSKNVKPDRVVFNA----LISACGQSGAVDRAFDVLAEMKAETHP 574

Query: 136 VN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
           ++ +    G ++ +   +G+   A  V  ++ +  +  +   Y   V+   + G    A 
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            + ++  + G  P E  +  LV+      DL+KA ++LQ    +     T   +  + A 
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
              KN  + L +   +   + +P V T+N +I   C+  ++ +AL+VL++M     C P+
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC-PN 753

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            +T++ ++            L+LL Q   + G  P +V    +  GL  LRR E+A    
Sbjct: 754 TITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCIT-GLC-LRRFEKA---- 806

Query: 375 NCMLGIGVVA 384
            C LG  VV+
Sbjct: 807 -CALGEPVVS 815

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 66.3 bits (163), Expect = 4e-14
 Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           PDV+T NT+I+G+CK G++EEALK+ N+M       P+  T++ +I GL
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           P +VTYN ++ G  +  +VEEA ++FN M   G+  +  TY+I+IDGLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 60.8 bits (149), Expect = 2e-12
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 23 RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR 56
          +G  P+VV+Y TLI G CR G +D A ++ DEM 
Sbjct: 1  KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 78/356 (21%), Positives = 152/356 (42%), Gaps = 27/356 (7%)

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP--SEHTYKV 214
               V + +   G  P     N ++    K G  + A +L +E      +P  +  ++  
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE------MPERNLASWGT 194

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           ++ GL    +  +A  + + M         R   + LRA   + +      +   +L+T 
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA--VTFTTIIFGLLNVGRIQ 332
              D      +I+ + K G IE+A  V + M       P+   V + +++ G    G  +
Sbjct: 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGM-------PEKTTVAWNSMLAGYALHGYSE 307

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EAL L Y+ M   G S    T++ ++R   RL  +E AK+    ++  G   D      +
Sbjct: 308 EALCLYYE-MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +D   +  ++++A+  +D +  P     N + + A+I G    G+  +AV     ++  G
Sbjct: 367 VDLYSKWGRMEDARNVFDRM--P---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421

Query: 452 VTPNIVCYNVVIDGACKLS-MKREAYQILREMRKN-GLNPDAVTWRILDKLHGNRG 505
           V PN V +  V+  AC+ S +  + ++I + M +N  + P A+ +  + +L G  G
Sbjct: 422 VAPNHVTFLAVLS-ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 55/238 (23%), Positives = 110/238 (46%), Gaps = 14/238 (5%)

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD-- 314
           +K+   +  V   +  +  +PD   +N V+    K G + +A ++ ++M       P+  
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM-------PERN 188

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
             ++ TII GL++ G  +EA  L ++ M + G      T+  +LR    L      +++ 
Sbjct: 189 LASWGTIIGGLVDAGNYREAFAL-FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
            C+L  GVV D+     +ID   +   +++A+  +D +   + +  N    +M+ G    
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN----SMLAGYALH 303

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           G   EA+   YE+ DSGV+ +   ++++I    +L++   A Q    + + G   D V
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           P++V YN +IDG CK     EA ++  EM+K G+ P+  T+ IL
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 66.1 bits (161), Expect = 3e-11
 Identities = 72/326 (22%), Positives = 130/326 (39%), Gaps = 52/326 (15%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           ++F +M + G   NV ++  LI G  R G++  A+  +  MR   V P+ + ++ L+   
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552

Query: 75  LRTRDVERANVLMFKLWERMK-EEEDLSVNNAAFANLVDSLCREGYVN------------ 121
            ++  V+RA    F +   MK E   +  ++     L+ +    G V+            
Sbjct: 553 GQSGAVDRA----FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608

Query: 122 ------EVFRIA-----------------EDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
                 EV+ IA                 +DM +     +E     ++D    +G    A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             ++   RK+G+    VSY+S++          +A +L E+       P+  T   L+  
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           LC  + L KA +VL       ++ R  +C N    ++ L+ +  +    +   L +Q + 
Sbjct: 729 LCEGNQLPKALEVLS------EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782

Query: 278 DVITLNTV----INGFCKMGRIEEAL 299
           D I  N V    I G C   R E+A 
Sbjct: 783 DGIKPNLVMCRCITGLCLR-RFEKAC 807

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 55.8 bits (136), Expect = 1e-10
 Identities = 15/32 (46%), Positives = 27/32 (84%)

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            +PDV+T NT+I+G C+ GR++EA+++L++M 
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 1  MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR 41
          +D  C   +V EA KLF +MK RG  PNV +Y+ LI G C+
Sbjct: 10 IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.1 bits (134), Expect = 3e-10
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           PD VT+ T+I G    G+++EAL  L+  M +RG  P + TY+ ++ GL
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALK-LFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 76/344 (22%), Positives = 132/344 (38%), Gaps = 68/344 (19%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
            CG +ID          A R+   M +R    +L S+ +I+ GL   G    A+ L  E 
Sbjct: 170 KCGMLID----------ARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREM 215

Query: 201 IQFGYLPSEHTYKVLVE---------------------GLCGES--------------DL 225
            + G      T+ V++                      G+ G++              D+
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           E AR V   M  K  V      N  L    L     E L +   M  +    D  T + +
Sbjct: 276 EDARCVFDGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I  F ++  +E A +    ++   F   D V  T ++      GR+++A N+ +  MP++
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNV-FDRMPRK 389

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
                ++++NA++ G     R  +A E+F  M+  GV  +  T+  V+     S   ++ 
Sbjct: 390 N----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445

Query: 406 KRFWDDI-----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
              +  +     + P  +H    YA MI+ L R G + EA   +
Sbjct: 446 WEIFQSMSENHRIKPRAMH----YACMIELLGREGLLDEAYAMI 485

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.0 bits (126), Expect = 4e-09
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           D   Y  +I G C+ GK+ EA+    E+   G+ PN+  Y+++IDG CK
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.6 bits (125), Expect = 6e-09
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           P +V+YN+++ G CK G    A +L  E  + G  P+ +TY +L++GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 58.3 bits (141), Expect = 6e-09
 Identities = 104/504 (20%), Positives = 179/504 (35%), Gaps = 92/504 (18%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG   V  A  +F  M  R    + +S+  +I GY   GE     ++F  MR   V P+ 
Sbjct: 235 CG--DVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +T +                                SV +A              + +  
Sbjct: 289 MTIT--------------------------------SVISAC-----------ELLGDE- 304

Query: 125 RIAEDMPQGKSVNEEFA-----CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           R+  +M  G  V   FA     C  +I      G    A +V   M  +      VS+ +
Sbjct: 305 RLGREM-HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTA 359

Query: 180 IVHGLCKHG---GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           ++ G  K+G     +  Y L+E   Q    P E T   ++       DL+   K+ +   
Sbjct: 360 MISGYEKNGLPDKALETYALME---QDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            K  +    + N  +      K   + L V   +     + DVI+  ++I G     R  
Sbjct: 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----PEKDVISWTSIIAGLRLNNRCF 472

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTII-----FGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           EAL     M+      P++VT    +      G L  G+   A ++L   +   G+ P  
Sbjct: 473 EALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHA-HVLRTGIGFDGFLP-- 527

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
              NA+L    R  R+  A   FN         D  ++ I++ G     +   A   ++ 
Sbjct: 528 ---NALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL-VDSGVTPNIVCYNVVIDGACKLS 470
           +V      D   + +++    RSG + + + + + +     +TPN+  Y  V+D   +  
Sbjct: 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639

Query: 471 MKREAYQILREMRKNGLNPDAVTW 494
              EAY  + +M    + PD   W
Sbjct: 640 KLTEAYNFINKMP---ITPDPAVW 660

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.9 bits (118), Expect = 4e-08
 Identities = 15/47 (31%), Positives = 28/47 (59%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
                +ID  C+ G+   A ++   M+KRG+ P++ +Y+ ++ GLCK
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 47.8 bits (115), Expect = 9e-08
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
          V+Y TLI G C+ G ++ A ++F EM+  G+ P+ 
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 100/509 (19%), Positives = 196/509 (38%), Gaps = 79/509 (15%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
            L  +     +++ ++S G  P+      ++  + + G +  A ++FDEM       N  
Sbjct: 135 ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLA 190

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           ++  ++ G++   +   A  L  ++WE   + E  +      A+      R G       
Sbjct: 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           +      G   +   +C  +ID   + G    A  V   M ++    + V++NS++ G  
Sbjct: 251 LK----TGVVGDTFVSCA-LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYA 301

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
            HG    A  L  E    G    + T+ +++      + LE A++               
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA-------------- 347

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                     LI+    L              D++    +++ + K GR+E+A  V  D 
Sbjct: 348 -------HAGLIRTGFPL--------------DIVANTALVDLYSKWGRMEDARNVF-DR 385

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +  K    + +++  +I G  N GR  +A+  +++ M   G +P  VT+ AVL       
Sbjct: 386 MPRK----NLISWNALIAGYGNHGRGTKAVE-MFERMIAEGVAPNHVTFLAVLSACRYSG 440

Query: 366 RVEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             E+  E+F  M     +   +  YA +I+ L     LDEA        +   ++   ++
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN---MW 497

Query: 425 AAMIKGLCRSGKIHEAVHF-------LYELVDSGVTPNIVCYNVVIDGACKLSMKR--EA 475
           AA++   CR   IH+ +         LY +    +   +V  N+        S  R  EA
Sbjct: 498 AALLTA-CR---IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN------SSGRQAEA 547

Query: 476 YQILREMRKNGLN-PDAVTW-RILDKLHG 502
            +++  +++ GL+   A TW  +  + H 
Sbjct: 548 AKVVETLKRKGLSMHPACTWIEVKKQDHS 576

Length = 697

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
          V+Y +LI GYC+ G+++ A ++F EM+  GV
Sbjct: 1  VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 88/375 (23%), Positives = 143/375 (38%), Gaps = 67/375 (17%)

Query: 166 RKRGL------TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           R RGL      + S    NS +  LC HG   +A +LLE   +      E  Y  L   L
Sbjct: 37  RSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-L 95

Query: 220 C-GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           C  +  +E+  +V    LS       R+ N  L              V   M +     D
Sbjct: 96  CEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----D 151

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIF---GLLNVGRIQE- 333
           + + N ++ G+ K G  +EAL + + M+ AG    PD  TF  ++    G+ ++ R +E 
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAG--VRPDVYTFPCVLRTCGGIPDLARGREV 209

Query: 334 ------------------------------ALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
                                         +  L++  MP+R      +++NA++ G F 
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFE 265

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIH 419
                E  E+F  M  + V  D  T   VI   CE   L   +R   ++    V      
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISA-CE---LLGDERLGREMHGYVVKTGFAV 321

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKREAYQI 478
           D  V  ++I+     G   EA     E V S + T + V +  +I G  K  +  +A + 
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEA-----EKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376

Query: 479 LREMRKNGLNPDAVT 493
              M ++ ++PD +T
Sbjct: 377 YALMEQDNVSPDEIT 391

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 121/577 (20%), Positives = 210/577 (36%), Gaps = 125/577 (21%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           +  A  +F  M  R    ++ S+  L+ GY + G  D A  ++  M   GV P+  T+  
Sbjct: 137 LVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192

Query: 70  ----------LVRG------VLR---TRDVERANVLMF------------KLWERMKEEE 98
                     L RG      V+R     DV+  N L+              +++RM   +
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVF----------------------------RIAEDM 130
            +S N        +  C EG   E+F                            R+  +M
Sbjct: 253 CISWNAMISGYFENGECLEGL--ELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310

Query: 131 PQGKSVNEEFA-----CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             G  V   FA     C  +I      G    A +V   M  +      VS+ +++ G  
Sbjct: 311 -HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYE 365

Query: 186 KHG---GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           K+G     +  Y L+E   Q    P E T   ++       DL+   K+ +    K  + 
Sbjct: 366 KNGLPDKALETYALME---QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              + N  +      K   + L V   +     + DVI+  ++I G     R  EAL   
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNI----PEKDVISWTSIIAGLRLNNRCFEALIFF 478

Query: 303 NDMVAGKFCAPDAVTFTTII-----FGLLNVGR----------------IQEALNLLYQV 341
             M+      P++VT    +      G L  G+                +  AL  LY  
Sbjct: 479 RQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536

Query: 342 MPQRGYS--------PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
             +  Y+          +V++N +L G     +   A E+FN M+  GV  D  T+  ++
Sbjct: 537 CGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
                S  + +   ++  +    +I  N   YA ++  L R+GK+ EA +F+ ++    +
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PI 653

Query: 453 TPNIVCYNVVIDGACKLSMKRE----AYQILREMRKN 485
           TP+   +  +++ AC++    E    A Q + E+  N
Sbjct: 654 TPDPAVWGALLN-ACRIHRHVELGELAAQHIFELDPN 689

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M          +A +L+ D+KS    P V +   LI   C   ++  A +V  EM+  G+
Sbjct: 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
            PN++TYS+L+    R  D +        L  + KE+
Sbjct: 751 CPNTITYSILLVASERKDDADVG----LDLLSQAKED 783

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCR 433
           D  TY  +IDG C+  +++EA + ++++     I  + Y Y+ +I GLC+
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 51/252 (20%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D      R+ +A  +F  M  +    N++S+  LI GY   G    A ++F+ M   GV
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+  ++     +   E+     +++++ M E   +      +A +++ L REG +
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQG----WEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478

Query: 121 NEVF----------------------RIAEDMPQGKSVNEE-FACG--------HMIDSL 149
           +E +                      RI +++  G+   E+ +  G         +++  
Sbjct: 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538

Query: 150 CRSGRNHGASRVVYVMRKRGLTP----SLVSYNSIVHGLCK----HGGCMRAYQ----LL 197
             SGR   A++VV  ++++GL+     + +      H        H      YQ    L+
Sbjct: 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELM 598

Query: 198 EEGIQFGYLPSE 209
           +E  ++GY+  E
Sbjct: 599 KEISEYGYVAEE 610

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            G+ P++V YN +IDG C+     EA ++L EM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           +GL P +V+YN+++ GLC+ G    A +LL+E
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           +T NT+I+G CK GR+EEAL++  +M   +   PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKE-RGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 12/27 (44%), Positives = 22/27 (81%)

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMV 306
           +T N++I+G+CK G++EEAL++  +M 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMK 27

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
             Y  +I GLC++G++ EA+    E+ + G+ P++
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +G  P +VTYN ++ GL R  RV+EA E+ + M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           V YN +IDG CK     EA ++ +EM++ G+ PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 41/233 (17%)

Query: 287 NGFCKMGRIEEALKVLNDM-----------VAGKF---C-----APDAVTFTTII----- 322
           N   + GRI++ + +L DM              KF   C       +A  F  +I     
Sbjct: 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTL 437

Query: 323 --FGLL-----NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             F +L     +   I  AL +L +++ + G       Y  ++    +  +V+   EVF+
Sbjct: 438 STFNMLMSVCASSQDIDGALRVL-RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD-DIVWPSNIH-DNYVYAAMIKGLCR 433
            M+  GV A+  T+  +IDG   + Q+  AK F    I+   N+  D  V+ A+I    +
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQV--AKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554

Query: 434 SGKIHEAVHFLYELVDSG--VTPNIVCYNVVIDGACK---LSMKREAYQILRE 481
           SG +  A   L E+      + P+ +    ++        +   +E YQ++ E
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
           VTYN+++ G  +  ++EEA E+F  M   GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
          + +Y  L+    + G+ D+A  V +EM+  G+ P
Sbjct: 1  LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            N  +   C      E L +   M +   +P+V T + +I+G CK
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 37.7 bits (89), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           G+  D  TY  +IDGLC + ++DEA    D+
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 75/371 (20%), Positives = 142/371 (38%), Gaps = 65/371 (17%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG+  + +A +LF +M  R    N+ S+ T+I G    G    A+ +F EM   G     
Sbjct: 171 CGM--LIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224

Query: 65  LTYSVLVR---GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            T+ V++R   G+   R  ++ +  + K    +  +  +S        L+D   + G + 
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKT--GVVGDTFVS------CALIDMYSKCGDIE 276

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +   + + MP+  +V    A   M+      G +  A  + Y MR  G++    +++ ++
Sbjct: 277 DARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV-LVEGLCGESDLEKARKVLQFMLSKKD 240
               +      A Q     I+ G  P +      LV+       +E AR V   M  K  
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-- 389

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                                ++I+ N +I G+   GR  +A++
Sbjct: 390 -------------------------------------NLISWNALIAGYGNHGRGTKAVE 412

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ-RGYSPGIVTYNAVLR 359
           +   M+A    AP+ VTF  ++      G  ++    ++Q M +     P  + Y  ++ 
Sbjct: 413 MFERMIAEGV-APNHVTFLAVLSACRYSGLSEQGWE-IFQSMSENHRIKPRAMHYACMIE 470

Query: 360 GLFRLRRVEEA 370
            L R   ++EA
Sbjct: 471 LLGREGLLDEA 481

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 37.3 bits (88), Expect = 5e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLL 338
             PD VT+ T+I GL   GR+ EA+ LL
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELL 30

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 98/478 (20%), Positives = 178/478 (37%), Gaps = 82/478 (17%)

Query: 36  IHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER-M 94
           +   C  G+++ A K+ + M+   V  +   Y  L R     R VE  +    ++  R +
Sbjct: 58  LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGS----RVCSRAL 113

Query: 95  KEEEDLSVN--NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
                L V   NA  +  V    R G +   + +   MP+     + F+   ++    ++
Sbjct: 114 SSHPSLGVRLGNAMLSMFV----RFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKA 165

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM---RAYQLLEEGIQFGYLPSE 209
           G    A  + + M   G+ P + ++  ++   C  GG     R  ++    ++FG+    
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-C--GGIPDLARGREVHAHVVRFGFELDV 222

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD-RTRICNIYLRALCLIKNPTELLNVLV 268
                L+       D+  AR V   M  +  +     I   +    CL     E L +  
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL-----EGLELFF 277

Query: 269 FMLQTQCQPDVITLNTVI-------------------------------NGFCKM----G 293
            M +    PD++T+ +VI                               N   +M    G
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
              EA KV + M        DAV++T +I G    G   +AL   Y +M Q   SP  +T
Sbjct: 338 SWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALE-TYALMEQDNVSPDEIT 391

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFW 409
             +VL     L  ++   ++       G+     +Y +V + L E       +D+A   +
Sbjct: 392 IASVLSACACLGDLDVGVKLHELAERKGL----ISYVVVANALIEMYSKCKCIDKALEVF 447

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            +I  P    D   + ++I GL  + +  EA+ F  +++ + + PN V     +  AC
Sbjct: 448 HNI--PEK--DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAAL-SAC 499

Length = 857

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           V YN +I G CK     EA ++ +EM++ G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.2 bits (85), Expect = 0.002
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           P+ +TY+ L+ G  +   VE A     KL+  MK +  +  N   ++ L+D LC+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEA----LKLFNEMK-KRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   CG   + +A  +F  M  +      V++ +++ GY   G  + A  ++ EMR  GV
Sbjct: 268 MYSKCGD--IEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  T+S+++R   R   +E A      L       +   V N A   LVD   + G +
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD--IVANTA---LVDLYSKWGRM 376

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + + MP+                     +N                  L+S+N++
Sbjct: 377 EDARNVFDRMPR---------------------KN------------------LISWNAL 397

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL-EKARKVLQFM 235
           + G   HG   +A ++ E  I  G  P+  T+ + V   C  S L E+  ++ Q M
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF-LAVLSACRYSGLSEQGWEIFQSM 452

Length = 697

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVA 307
           + T N ++    K G  + AL VL +M A
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKA 29

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.2 bits (92), Expect = 0.002
 Identities = 48/266 (18%), Positives = 89/266 (33%), Gaps = 11/266 (4%)

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV----FMLQTQCQPDVI 280
           L+     L  +L            +    L L++   EL   L      +          
Sbjct: 1   LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
            L  +     K+GR+EEAL++L   +  +     A     +   L  +G+ +EAL LL +
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG--VVADSTTYAIVIDGLCE 398
                   P +      L  L+ L   EEA E++   L +   +   +     +   L  
Sbjct: 121 A-LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA 179

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
             + +EA    +  +  +   D      +     + GK  EA+ +  + ++         
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239

Query: 459 YNVVIDGACKLSMKREAYQILREMRK 484
           YN+    A  L       + L  + K
Sbjct: 240 YNL----ALLLLELGRYEEALEALEK 261

Length = 291

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 18/76 (23%), Positives = 37/76 (48%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC  +++ +A ++  +MK  G  PN ++Y+ L+    R  + DV   +  + +  G+
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785

Query: 61  LPNSLTYSVLVRGVLR 76
            PN +    +    LR
Sbjct: 786 KPNLVMCRCITGLCLR 801

Length = 1060

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	512
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.92
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.89
PRK14574	822	hmsH outer membrane protein; Provisional	99.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
PRK14574	822	hmsH outer membrane protein; Provisional	99.89
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.88
KOG2003	840	consensus TPR repeat-containing protein [General f	99.83
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.81
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.81
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.8
KOG2076	895	consensus RNA polymerase III transcription factor	99.78
KOG2003	840	consensus TPR repeat-containing protein [General f	99.74
KOG2076	895	consensus RNA polymerase III transcription factor	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.71
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.7
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.69
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.66
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.66
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.65
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.64
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.63
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.62
KOG1126	638	consensus DNA-binding cell division cycle control	99.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.61
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.57
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.56
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.53
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.5
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.47
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.46
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.46
KOG1129	478	consensus TPR repeat-containing protein [General f	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.45
PRK12370	553	invasion protein regulator; Provisional	99.45
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.44
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.43
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.43
PRK12370	553	invasion protein regulator; Provisional	99.4
PF13041	50	PPR_2: PPR repeat family	99.39
PF13041	50	PPR_2: PPR repeat family	99.39
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.39
KOG1129	478	consensus TPR repeat-containing protein [General f	99.38
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.37
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.35
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.35
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.3
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.29
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.28
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.25
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.23
PRK11189	296	lipoprotein NlpI; Provisional	99.23
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.22
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.16
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.16
PRK11189	296	lipoprotein NlpI; Provisional	99.16
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.12
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.12
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.11
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.1
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.09
PRK04841	903	transcriptional regulator MalT; Provisional	99.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.04
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.0
PRK04841	903	transcriptional regulator MalT; Provisional	98.99
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.97
KOG1125	579	consensus TPR repeat-containing protein [General f	98.97
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.93
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.86
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.86
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.85
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.84
KOG1125	579	consensus TPR repeat-containing protein [General f	98.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.82
PLN02789	320	farnesyltranstransferase	98.8
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.8
PF12854	34	PPR_1: PPR repeat	98.79
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.77
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.76
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.76
PF12854	34	PPR_1: PPR repeat	98.75
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.74
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.73
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.72
PLN02789	320	farnesyltranstransferase	98.71
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.71
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.69
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.67
PRK15359	144	type III secretion system chaperone protein SscB;	98.66
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.65
PRK15359	144	type III secretion system chaperone protein SscB;	98.62
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.62
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.6
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.6
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.58
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.46
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.45
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.36
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.33
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.32
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.3
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.3
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.27
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.24
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.24
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.22
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.12
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.07
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.05
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.04
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.02
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.98
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.95
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.95
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.95
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.94
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.94
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.94
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.93
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.93
KOG0553	304	consensus TPR repeat-containing protein [General f	97.93
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.87
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.86
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.85
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.85
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.84
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.84
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.82
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.82
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.8
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.79
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.76
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.75
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.74
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.74
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.73
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.72
KOG0553	304	consensus TPR repeat-containing protein [General f	97.7
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.67
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.64
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.62
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.58
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.56
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.55
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.53
PF12688	120	TPR_5: Tetratrico peptide repeat	97.52
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.52
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.51
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.49
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.45
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.41
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.37
PF12688	120	TPR_5: Tetratrico peptide repeat	97.36
PF13371	73	TPR_9: Tetratricopeptide repeat	97.32
PRK10803	263	tol-pal system protein YbgF; Provisional	97.31
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.25
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.25
PRK10803	263	tol-pal system protein YbgF; Provisional	97.22
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.21
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.16
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.14
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.12
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.07
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.01
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.01
PF13371	73	TPR_9: Tetratricopeptide repeat	97.0
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.97
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.95
PRK15331	165	chaperone protein SicA; Provisional	96.94
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.93
KOG1258	577	consensus mRNA processing protein [RNA processing	96.9
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.84
PRK15331	165	chaperone protein SicA; Provisional	96.81
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.8
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.79
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.78
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.67
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.66
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.6
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.58
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.57
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.57
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.45
KOG1585	308	consensus Protein required for fusion of vesicles	96.44
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.43
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.39
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.39
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.39
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.36
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.36
PRK11906	458	transcriptional regulator; Provisional	96.35
PF13512	142	TPR_18: Tetratricopeptide repeat	96.34
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.32
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.3
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.24
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.11
KOG1258	577	consensus mRNA processing protein [RNA processing	96.08
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.07
KOG1585	308	consensus Protein required for fusion of vesicles	96.05
PRK11906	458	transcriptional regulator; Provisional	95.98
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.92
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.7
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.66
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.66
PF13428	44	TPR_14: Tetratricopeptide repeat	95.59
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.59
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.54
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.39
PF13428	44	TPR_14: Tetratricopeptide repeat	95.27
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.25
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.21
KOG3941	406	consensus Intermediate in Toll signal transduction	95.14
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.12
PF13512	142	TPR_18: Tetratricopeptide repeat	95.04
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.99
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.85
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.83
KOG4555	175	consensus TPR repeat-containing protein [Function	94.76
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.72
KOG3941	406	consensus Intermediate in Toll signal transduction	94.67
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.65
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.57
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.5
KOG4555	175	consensus TPR repeat-containing protein [Function	94.44
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.43
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.42
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.34
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.27
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.26
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.2
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.8
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.52
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.46
PF13431	34	TPR_17: Tetratricopeptide repeat	93.38
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.26
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.23
PF13929	292	mRNA_stabil: mRNA stabilisation	93.2
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.07
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.04
PF13431	34	TPR_17: Tetratricopeptide repeat	92.98
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	92.95
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.63
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.54
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.39
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	92.24
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.96
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	91.91
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.67
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	91.6
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.57
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.08
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.02
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	90.91
PF13929	292	mRNA_stabil: mRNA stabilisation	90.67
KOG4570	418	consensus Uncharacterized conserved protein [Funct	90.46
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.22
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.88
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.78
KOG2300	629	consensus Uncharacterized conserved protein [Funct	89.74
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.62
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.61
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.33
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	89.01
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.77
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	88.51
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.5
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.31
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.24
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.14
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	88.12
KOG4648	536	consensus Uncharacterized conserved protein, conta	87.87
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.83
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.45
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	87.3
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.19
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.1
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	87.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	86.76
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.65
KOG4234	271	consensus TPR repeat-containing protein [General f	86.49
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.27
KOG3364	149	consensus Membrane protein involved in organellar	85.72
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	85.57
KOG1586	288	consensus Protein required for fusion of vesicles	85.51
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	85.14
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	84.82
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	84.81
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.75
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	84.48
KOG4648	536	consensus Uncharacterized conserved protein, conta	84.36
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.31
COG3947	361	Response regulator containing CheY-like receiver a	84.27
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	83.73
KOG4234	271	consensus TPR repeat-containing protein [General f	83.66
COG3947	361	Response regulator containing CheY-like receiver a	83.64
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	83.52
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	83.16
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.57
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.38
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	82.04
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	81.68
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	81.61
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.28
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	81.14
KOG2471	696	consensus TPR repeat-containing protein [General f	80.63
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	80.59

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.1e-71  Score=540.13  Aligned_cols=492  Identities=16%  Similarity=0.228  Sum_probs=463.4

Q ss_pred             ccccccCcHHHHHHHHHHHHhCCC-CCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 010342            2 DQLCGLSRVGEAHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV   80 (512)
Q Consensus         2 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~   80 (512)
                      +.|++.|++++|.++|++|.+.|+ .|+...++.++..|.+.|.+++|..+|+.|..    ||..+|+.++.+|++.|++
T Consensus       378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~  453 (1060)
T PLN03218        378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDI  453 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCH
Confidence            456788999999999999999985 56777888999999999999999999999975    9999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHH
Q 010342           81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR  160 (512)
Q Consensus        81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  160 (512)
                      +.|.+++.++.+    . +..|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus       454 e~A~~lf~~M~~----~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~  528 (1060)
T PLN03218        454 DGALRVLRLVQE----A-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG  528 (1060)
T ss_pred             HHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            999887666543    3 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHh--CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010342          161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ--FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK  238 (512)
Q Consensus       161 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  238 (512)
                      +|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|+.|.+.
T Consensus       529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999986  578999999999999999999999999999999999


Q ss_pred             CCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHH
Q 010342          239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF  318 (512)
Q Consensus       239 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  318 (512)
                      +..++..+|+.++.+|++.|++++|..+|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.+. .|+..+|
T Consensus       609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~ty  687 (1060)
T PLN03218        609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSY  687 (1060)
T ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999886 8999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 010342          319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE  398 (512)
Q Consensus       319 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  398 (512)
                      +.++.+|++.|++++|.++|++ |...++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+
T Consensus       688 nsLI~ay~k~G~~eeA~~lf~e-M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k  766 (1060)
T PLN03218        688 SSLMGACSNAKNWKKALELYED-IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER  766 (1060)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999988 457789999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCC
Q 010342          399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----S-------------------GKIHEAVHFLYELVDSGVTPN  455 (512)
Q Consensus       399 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~p~  455 (512)
                      .|++++|.+++++|.+.|+.||..+|+.++..|.+    .                   +..++|..+|++|++.|+.||
T Consensus       767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd  846 (1060)
T PLN03218        767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT  846 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999999876432    1                   124679999999999999999


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccC
Q 010342          456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR  504 (512)
Q Consensus       456 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  504 (512)
                      ..||+.++.+++..+....+..+++.|...+..|+..+|++|++.+++.
T Consensus       847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~  895 (1060)
T PLN03218        847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY  895 (1060)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence            9999999988888999999999999998888999999999999998653

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=8.7e-69  Score=524.99  Aligned_cols=478  Identities=14%  Similarity=0.199  Sum_probs=450.3

Q ss_pred             ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342            2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE   81 (512)
Q Consensus         2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~   81 (512)
                      ++|.+.|.+++|..+|+.|..    ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+.+
T Consensus       414 ~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd  489 (1060)
T PLN03218        414 KACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD  489 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence            357788999999999999875    8999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHH
Q 010342           82 RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV  161 (512)
Q Consensus        82 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  161 (512)
                      .|.+++.++.    .. ++.|+..+|+.+|.+|++.|++++|.++|++|...+..||..+|+.+|.+|++.|++++|.++
T Consensus       490 ~A~~vf~eM~----~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l  564 (1060)
T PLN03218        490 AMFEVFHEMV----NA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV  564 (1060)
T ss_pred             HHHHHHHHHH----Hc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9988665554    33 889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH--cCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 010342          162 VYVMRK--RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK  239 (512)
Q Consensus       162 ~~~~~~--~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  239 (512)
                      |++|..  .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|...+
T Consensus       565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G  644 (1060)
T PLN03218        565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG  644 (1060)
T ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            999986  678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHH
Q 010342          240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT  319 (512)
Q Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  319 (512)
                      ..|+..+|+.++.+|++.|+.++|.+++..|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...+. .|+..+|+
T Consensus       645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-~PdvvtyN  723 (1060)
T PLN03218        645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMN  723 (1060)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998775 89999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh-
Q 010342          320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-  398 (512)
Q Consensus       320 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  398 (512)
                      .++.+|++.|++++|.++|.+ |...|+.||..+|+.++.+|++.|+++.|..++.+|.+.|+.||..+|+.++..|.+ 
T Consensus       724 ~LI~gy~k~G~~eeAlelf~e-M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~  802 (1060)
T PLN03218        724 ALITALCEGNQLPKALEVLSE-MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR  802 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998 558899999999999999999999999999999999999999999999999876532 


Q ss_pred             ---c-------------------CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010342          399 ---S-------------------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI  456 (512)
Q Consensus       399 ---~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  456 (512)
                         +                   +..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+.
T Consensus       803 y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~  882 (1060)
T PLN03218        803 FEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ  882 (1060)
T ss_pred             HHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence               1                   124679999999999999999999999998888999999999999999888889999


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 010342          457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV  492 (512)
Q Consensus       457 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  492 (512)
                      .+|++++.++.+.  .++|..++++|...|+.|+..
T Consensus       883 ~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        883 SNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             hhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            9999999998432  468999999999999999875

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.1e-69  Score=536.45  Aligned_cols=482  Identities=18%  Similarity=0.257  Sum_probs=373.9

Q ss_pred             ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342            2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE   81 (512)
Q Consensus         2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~   81 (512)
                      +.|.+.|+++.|.++|++|.+    ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|...++..
T Consensus       129 ~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~  204 (857)
T PLN03077        129 SMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA  204 (857)
T ss_pred             HHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence            467888999999999998864    5888999999999999999999999999988888999999999998888888888


Q ss_pred             hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHH
Q 010342           82 RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV  161 (512)
Q Consensus        82 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  161 (512)
                      .+.+++..+.+.     +..|+..++++|+..|++.|++++|.++|++|..    ||..+|+++|.+|++.|++++|.++
T Consensus       205 ~~~~~~~~~~~~-----g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~l  275 (857)
T PLN03077        205 RGREVHAHVVRF-----GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLEL  275 (857)
T ss_pred             hHHHHHHHHHHc-----CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence            887777665543     7778888888888888888888888888888875    6677888888888888888888888


Q ss_pred             HHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 010342          162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV  241 (512)
Q Consensus       162 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  241 (512)
                      |++|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|..    
T Consensus       276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----  351 (857)
T PLN03077        276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----  351 (857)
T ss_pred             HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888887752    


Q ss_pred             CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010342          242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI  321 (512)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  321 (512)
                      ++..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.+. .++..+++.+
T Consensus       352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~L  430 (857)
T PLN03077        352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL-ISYVVVANAL  430 (857)
T ss_pred             CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC-CcchHHHHHH
Confidence            456678888888888888888888888887777777777777777777777777777777777776664 6666667777


Q ss_pred             HHHHhhcCCHHHHHHHHHhhcc-----------------------------cCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010342          322 IFGLLNVGRIQEALNLLYQVMP-----------------------------QRGYSPGIVTYNAVLRGLFRLRRVEEAKE  372 (512)
Q Consensus       322 ~~~~~~~~~~~~a~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  372 (512)
                      +.+|++.|++++|.++|+++..                             ..++.||..||+.++.+|++.|+.+.+.+
T Consensus       431 i~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~  510 (857)
T PLN03077        431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE  510 (857)
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence            7777666666666666655321                             01234444444444444444444444444


Q ss_pred             HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010342          373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV  452 (512)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  452 (512)
                      ++..+.+.|+.++..+++.|+++|.+.|++++|.++|+.+     .+|..+|++++.+|++.|+.++|.++|++|.+.|+
T Consensus       511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~  585 (857)
T PLN03077        511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV  585 (857)
T ss_pred             HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            4444444444444445555556666666666666666654     56778888888888888888888888888888888


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCChHHHHHHHHhhccCCC
Q 010342          453 TPNIVCYNVVIDGACKLSMKREAYQILREMR-KNGLNPDAVTWRILDKLHGNRGN  506 (512)
Q Consensus       453 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~  506 (512)
                      .||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|+
T Consensus       586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~  640 (857)
T PLN03077        586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK  640 (857)
T ss_pred             CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence            8888888888888888888888888888888 67888888888888888888885

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.4e-68  Score=529.12  Aligned_cols=476  Identities=18%  Similarity=0.227  Sum_probs=428.8

Q ss_pred             ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342            2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE   81 (512)
Q Consensus         2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~   81 (512)
                      .+|.+.+.++.|..++..+.+.+..++...+|.++..|++.|+.+.|.++|++|.+    ||..+|+.+|.+|.+.|+++
T Consensus        94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~  169 (857)
T PLN03077         94 RLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFD  169 (857)
T ss_pred             HHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHH
Confidence            45678899999999999999999999999999999999999999999999999974    89999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHH
Q 010342           82 RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV  161 (512)
Q Consensus        82 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  161 (512)
                      +|.+++.++.    .. ++.|+..||+.++++|+..++++.+.+++..+.+.|..|+..+++.++.+|++.|+++.|.++
T Consensus       170 ~A~~~f~~M~----~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l  244 (857)
T PLN03077        170 EALCLYHRML----WA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV  244 (857)
T ss_pred             HHHHHHHHHH----Hc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence            9988766554    33 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 010342          162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV  241 (512)
Q Consensus       162 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  241 (512)
                      |+.|..    ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+...+..
T Consensus       245 f~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~  320 (857)
T PLN03077        245 FDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA  320 (857)
T ss_pred             HhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence            999974    6999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010342          242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI  321 (512)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  321 (512)
                      ++..+|+.++.+|++.|++++|.++|+.|.    .||..+|+.++.+|.+.|++++|+++|++|.+.+. .||..+|+.+
T Consensus       321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~Pd~~t~~~l  395 (857)
T PLN03077        321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-SPDEITIASV  395 (857)
T ss_pred             cchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCCceeHHHH
Confidence            999999999999999999999999999986    57899999999999999999999999999998876 8999999999


Q ss_pred             HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342          322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ  401 (512)
Q Consensus       322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  401 (512)
                      +.+|++.|+.+.|.+++.. +...|+.|+..+|+.++.+|++.|++++|.++|++|.+    +|..+|+.++.+|.+.|+
T Consensus       396 l~a~~~~g~~~~a~~l~~~-~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~  470 (857)
T PLN03077        396 LSACACLGDLDVGVKLHEL-AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNR  470 (857)
T ss_pred             HHHHhccchHHHHHHHHHH-HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCC
Confidence            9999999999999999987 45789999999999999999999999999988888754    455666666666666666


Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHH-----------------------------------HHHHhcCCHHHHHHHHHH
Q 010342          402 LDEAKRFWDDIVWPSNIHDNYVYAAMI-----------------------------------KGLCRSGKIHEAVHFLYE  446 (512)
Q Consensus       402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-----------------------------------~~~~~~g~~~~a~~~~~~  446 (512)
                      .++|..+|++|.. +..||..+|+.++                                   .+|+++|++++|.++|+.
T Consensus       471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~  549 (857)
T PLN03077        471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS  549 (857)
T ss_pred             HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence            6666666666653 3556665555555                                   555555566666655555


Q ss_pred             HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCC
Q 010342          447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN  506 (512)
Q Consensus       447 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  506 (512)
                      +     .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.
T Consensus       550 ~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~  604 (857)
T PLN03077        550 H-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM  604 (857)
T ss_pred             c-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence            4     578889999999999999999999999999999999999999999999999885

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.8e-65  Score=496.45  Aligned_cols=464  Identities=17%  Similarity=0.197  Sum_probs=439.6

Q ss_pred             ccccccCcHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 010342            2 DQLCGLSRVGEAHKLFFDMKSRG-HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV   80 (512)
Q Consensus         2 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~   80 (512)
                      ..|.+.|++++|.++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|.+.|++
T Consensus        95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~  174 (697)
T PLN03081         95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML  174 (697)
T ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence            45788999999999999999864 68999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHH
Q 010342           81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR  160 (512)
Q Consensus        81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  160 (512)
                      +.|.+++.    +|+     .|+..+|+.++.+|++.|++++|.++|++|.+.+..|+..+|+.++.++++.|..+.+.+
T Consensus       175 ~~A~~lf~----~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~  245 (697)
T PLN03081        175 IDARRLFD----EMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ  245 (697)
T ss_pred             HHHHHHHh----cCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence            99977654    443     378899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 010342          161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD  240 (512)
Q Consensus       161 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  240 (512)
                      ++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.    .+|..+|+.++.+|++.|++++|.++|++|.+.+.
T Consensus       246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~  321 (697)
T PLN03081        246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV  321 (697)
T ss_pred             HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999985    57899999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHH
Q 010342          241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT  320 (512)
Q Consensus       241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  320 (512)
                      .|+..+|+.++.+|++.|+.++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.     .||..+|+.
T Consensus       322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~  396 (697)
T PLN03081        322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNA  396 (697)
T ss_pred             CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999996     578999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCChHhHHHHHHHHHhc
Q 010342          321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCES  399 (512)
Q Consensus       321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~  399 (512)
                      ++.+|++.|+.++|.++|++| ...|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~  475 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE  475 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence            999999999999999999994 5889999999999999999999999999999999986 69999999999999999999


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 010342          400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQI  478 (512)
Q Consensus       400 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~  478 (512)
                      |++++|.++++++   +..|+..+|++|+.+|...|+++.|..+++++.+.  .| +..+|..++..|++.|++++|.++
T Consensus       476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence            9999999999886   36899999999999999999999999999999765  44 577999999999999999999999


Q ss_pred             HHHHHHCCCCC
Q 010342          479 LREMRKNGLNP  489 (512)
Q Consensus       479 ~~~m~~~~~~p  489 (512)
                      ++.|.+.|+..
T Consensus       551 ~~~m~~~g~~k  561 (697)
T PLN03081        551 VETLKRKGLSM  561 (697)
T ss_pred             HHHHHHcCCcc
Confidence            99999998753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.1e-62  Score=480.53  Aligned_cols=458  Identities=17%  Similarity=0.221  Sum_probs=431.3

Q ss_pred             CCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010342           26 VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN  104 (512)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  104 (512)
                      .++..+|+.+|..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++.+.+.+++..+.+.     +..|+.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-----g~~~~~  158 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-----GFEPDQ  158 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCCcch
Confidence            3456689999999999999999999999998864 7899999999999999999999998877655443     789999


Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 010342          105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL  184 (512)
Q Consensus       105 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  184 (512)
                      .+|+.++..|++.|++++|.++|++|.+    |+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|
T Consensus       159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~  234 (697)
T PLN03081        159 YMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS  234 (697)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence            9999999999999999999999999976    788999999999999999999999999999999999999999999999


Q ss_pred             hccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHH
Q 010342          185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL  264 (512)
Q Consensus       185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  264 (512)
                      +..|..+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|..    ++..+|+.++.+|++.|++++|.
T Consensus       235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~  310 (697)
T PLN03081        235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEAL  310 (697)
T ss_pred             hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999853    46789999999999999999999


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc
Q 010342          265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ  344 (512)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  344 (512)
                      ++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.+. .|+..+++.++.+|++.|++++|.++|+++.  
T Consensus       311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--  387 (697)
T PLN03081        311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMP--  387 (697)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence            9999999999999999999999999999999999999999999886 8999999999999999999999999998853  


Q ss_pred             CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCCCCHHh
Q 010342          345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW-PSNIHDNYV  423 (512)
Q Consensus       345 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~  423 (512)
                         .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .++.|+..+
T Consensus       388 ---~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~  464 (697)
T PLN03081        388 ---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH  464 (697)
T ss_pred             ---CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence               4799999999999999999999999999999999999999999999999999999999999999975 689999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhc
Q 010342          424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG  502 (512)
Q Consensus       424 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~  502 (512)
                      |+.++++|++.|++++|.+++++|   +..|+..+|+.++.+|...|+++.|..+++++.+  +.|+ ..+|..|+++|+
T Consensus       465 y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        465 YACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             hHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHH
Confidence            999999999999999999998765   5789999999999999999999999999999975  5665 679999999999


Q ss_pred             cCCCC
Q 010342          503 NRGND  507 (512)
Q Consensus       503 ~~g~~  507 (512)
                      +.|+-
T Consensus       540 ~~G~~  544 (697)
T PLN03081        540 SSGRQ  544 (697)
T ss_pred             hCCCH
Confidence            99863

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=5.5e-32  Score=278.46  Aligned_cols=480  Identities=14%  Similarity=0.054  Sum_probs=362.1

Q ss_pred             ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342            6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV   85 (512)
Q Consensus         6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   85 (512)
                      ..|++++|++.|+.+.+..+. +......++..+.+.|++++|..+++++... .++++.++..+...+...|++++|..
T Consensus       409 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~  486 (899)
T TIGR02917       409 SQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKARE  486 (899)
T ss_pred             hCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence            344444444444444443221 2223344445555555555555555555543 23455667777777777777777777


Q ss_pred             HHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHH
Q 010342           86 LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM  165 (512)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (512)
                      .+.++++..+      .+...+..+...+...|++++|.+.++.+....+ .+..++..+...+.+.|+.++|...++.+
T Consensus       487 ~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  559 (899)
T TIGR02917       487 AFEKALSIEP------DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKA  559 (899)
T ss_pred             HHHHHHhhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7766654322      2234556677777777888888887777766543 35566777777788888888888888887


Q ss_pred             HHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 010342          166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR  245 (512)
Q Consensus       166 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  245 (512)
                      ...+. .+...+..++..+...|++++|.++++.+.+.. +.+...|..+...+...|++++|...++.+.+. .+.+..
T Consensus       560 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~  636 (899)
T TIGR02917       560 AELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-QPDSAL  636 (899)
T ss_pred             HHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChH
Confidence            76543 255677778888888888888888888887643 556778888888888888888888888888754 344556


Q ss_pred             cHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342          246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL  325 (512)
Q Consensus       246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  325 (512)
                      .+..+...+...|++++|...++.+.+..+ .+...+..++..+...|++++|..+++.+....  +.+...+..+...+
T Consensus       637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~  713 (899)
T TIGR02917       637 ALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLY  713 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHH
Confidence            777888888888889999888888887653 356788888888888899999999998888765  56777888888889


Q ss_pred             hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342          326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA  405 (512)
Q Consensus       326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  405 (512)
                      ...|++++|...|.+.+..   .|+..++..+..++.+.|++++|...++.+.+.. +.+...+..+...|...|++++|
T Consensus       714 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A  789 (899)
T TIGR02917       714 LRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKA  789 (899)
T ss_pred             HHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence            9999999999999886643   3555777788888999999999999999988864 66778889999999999999999


Q ss_pred             HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      ...|+++.+.. +++..+++.++..+...|+ .+|...++++.+.. +-+..++..+...+...|++++|.++++++.+.
T Consensus       790 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       790 IKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI  866 (899)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999998765 6778889999999999999 88999999998864 335677888999999999999999999999986


Q ss_pred             CCCCChHHHHHHHHhhccCCCCC
Q 010342          486 GLNPDAVTWRILDKLHGNRGNDF  508 (512)
Q Consensus       486 ~~~p~~~~~~~l~~~~~~~g~~~  508 (512)
                      + +.+..++..+..++...|+..
T Consensus       867 ~-~~~~~~~~~l~~~~~~~g~~~  888 (899)
T TIGR02917       867 A-PEAAAIRYHLALALLATGRKA  888 (899)
T ss_pred             C-CCChHHHHHHHHHHHHcCCHH
Confidence            5 348889999999999988753

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.2e-31  Score=275.94  Aligned_cols=480  Identities=13%  Similarity=0.033  Sum_probs=320.0

Q ss_pred             cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN   84 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   84 (512)
                      .+.|++++|...++.+.+..+ .+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.
T Consensus       340 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  417 (899)
T TIGR02917       340 LRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI  417 (899)
T ss_pred             HHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH
Confidence            345555555555555554422 244455555555666666666666666555432 223344455555555556666665


Q ss_pred             HHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHH
Q 010342           85 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV  164 (512)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (512)
                      ..+.++.+..+.      .......++..+.+.|++++|.++++.+....+ ++..++..+...+...|++++|.+.|++
T Consensus       418 ~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~  490 (899)
T TIGR02917       418 ADLETAAQLDPE------LGRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEK  490 (899)
T ss_pred             HHHHHHHhhCCc------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            555554432211      112333455666667777777777766655433 4555677777777777777777777777


Q ss_pred             HHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 010342          165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT  244 (512)
Q Consensus       165 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  244 (512)
                      +.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|+.++|..+++++... .+.+.
T Consensus       491 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~  567 (899)
T TIGR02917       491 ALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-NPQEI  567 (899)
T ss_pred             HHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cccch
Confidence            7665322 44566667777777777777777777776654 445667777777777777777777777777643 33445


Q ss_pred             ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 010342          245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG  324 (512)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  324 (512)
                      ..+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+..  +.+...+..+...
T Consensus       568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~  644 (899)
T TIGR02917       568 EPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADA  644 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence            566667777777888888888887777654 3356677777888888888888888888777654  4566677777777


Q ss_pred             HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  404 (512)
                      +...|++++|...+.+.+...  +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++
T Consensus       645 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~  721 (899)
T TIGR02917       645 YAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA  721 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence            888888888888887765432  4456677777777777888888888888777764 5566677777777888888888


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      |...++.+...+  |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.++++++.+
T Consensus       722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  798 (899)
T TIGR02917       722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK  798 (899)
T ss_pred             HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            888888877653  444566677777888888888888888777764 34667777777788888888888888888876


Q ss_pred             CCCCCChHHHHHHHHhhccCCC
Q 010342          485 NGLNPDAVTWRILDKLHGNRGN  506 (512)
Q Consensus       485 ~~~~p~~~~~~~l~~~~~~~g~  506 (512)
                      .. +++...+..+..++...|+
T Consensus       799 ~~-p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       799 KA-PDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             hC-CCCHHHHHHHHHHHHhcCc
Confidence            53 4556677777777776665

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=1.1e-23  Score=216.75  Aligned_cols=488  Identities=11%  Similarity=0.009  Sum_probs=326.5

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVV-SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE   81 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~   81 (512)
                      .+.+.|++++|++.|+.+.+.+++ +.. ............|+.++|++.|+++.+.. +-+...+..+...+...|+.+
T Consensus       121 ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~  198 (1157)
T PRK11447        121 LLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD  198 (1157)
T ss_pred             HHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence            356789999999999999876433 322 12122222334689999999999998864 335667778888888899999


Q ss_pred             hHHHHHHHHHHHhhh-------------cCCC--------------CcchH---------------------hHHHHHHH
Q 010342           82 RANVLMFKLWERMKE-------------EEDL--------------SVNNA---------------------AFANLVDS  113 (512)
Q Consensus        82 ~a~~~~~~~~~~~~~-------------~~~~--------------~~~~~---------------------~~~~l~~~  113 (512)
                      +|...+.++...-+.             ....              .|+..                     ........
T Consensus       199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~  278 (1157)
T PRK11447        199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA  278 (1157)
T ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence            999888776432100             0000              01100                     00122455


Q ss_pred             HHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-cchHH------------HH
Q 010342          114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-LVSYN------------SI  180 (512)
Q Consensus       114 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~------------~l  180 (512)
                      +...|++++|+..|++.....+ .+..++..+..++.+.|++++|...|++..+...... ...|.            ..
T Consensus       279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~  357 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ  357 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence            6778999999999999887654 4567888899999999999999999999887643221 11121            22


Q ss_pred             HHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH-------
Q 010342          181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA-------  253 (512)
Q Consensus       181 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-------  253 (512)
                      ...+.+.|++++|...|+++++.. +.+...+..+...+...|++++|.+.|+++.... +.+...+..+...       
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~  435 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE  435 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence            445678999999999999998864 4566778888999999999999999999988643 2233333333322       


Q ss_pred             -----------------------------------HHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 010342          254 -----------------------------------LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA  298 (512)
Q Consensus       254 -----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  298 (512)
                                                         +...|++++|...+++.++..+. +...+..+...|.+.|++++|
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence                                               33456666666666666655432 444555666666666666666


Q ss_pred             HHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh---------hhHHHHHHHHHccCCHHH
Q 010342          299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI---------VTYNAVLRGLFRLRRVEE  369 (512)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~  369 (512)
                      ...++++.+..  +.+...+..+...+...++.++|+..+.++. .....++.         ..+..+...+...|+.++
T Consensus       515 ~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~-~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        515 DALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLP-RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             HHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC-chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence            66666665543  3344444444444555666666666665522 11111111         112234455667788888


Q ss_pred             HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      |..+++.     .+.+...+..+...+.+.|++++|...++++++.. +.+...+..++..+...|++++|.+.++.+.+
T Consensus       592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            8877761     35566677888899999999999999999998765 56778889999999999999999999998876


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---ChHHHHHHHHhhccCCC
Q 010342          450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL--NP---DAVTWRILDKLHGNRGN  506 (512)
Q Consensus       450 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~  506 (512)
                      .. +.+...+..+..++...|++++|.++++++....-  +|   +...+..+.+++...|+
T Consensus       666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~  726 (1157)
T PRK11447        666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ  726 (1157)
T ss_pred             cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence            53 22456677788888899999999999999876421  11   12345445555555443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=8e-23  Score=210.44  Aligned_cols=481  Identities=12%  Similarity=0.028  Sum_probs=299.4

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhH----------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSY----------------TTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT   66 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~   66 (512)
                      .+.+.|+.++|.+.++++.+..+. +....                ..+...+.+.|++++|+..|+++.+.+ +|+...
T Consensus        71 ~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~l  148 (1157)
T PRK11447         71 LLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDL  148 (1157)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHH
Confidence            456899999999999999998433 33322                333456889999999999999998753 344321


Q ss_pred             -HHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCC---------
Q 010342           67 -YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV---------  136 (512)
Q Consensus        67 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------  136 (512)
                       ...........++.++|...++++.+..|..      ...+..+...+...|+.++|++.++++......         
T Consensus       149 a~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~------~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~  222 (1157)
T PRK11447        149 AVEYWRLVAKLPAQRPEAINQLQRLNADYPGN------TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWY  222 (1157)
T ss_pred             HHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence             1112222234689999999999888764432      456677889999999999999999987543210         


Q ss_pred             -----------------------CcchhH---------------------HHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 010342          137 -----------------------NEEFAC---------------------GHMIDSLCRSGRNHGASRVVYVMRKRGLTP  172 (512)
Q Consensus       137 -----------------------~~~~~~---------------------~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p  172 (512)
                                             |+....                     ......+...|++++|...|++..+.... 
T Consensus       223 ~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-  301 (1157)
T PRK11447        223 GQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-  301 (1157)
T ss_pred             HHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence                                   000000                     01123345567777777777777665322 


Q ss_pred             CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCC-chhhH------------HHHHHHHhccCCHHHHHHHHHHHHhCC
Q 010342          173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTY------------KVLVEGLCGESDLEKARKVLQFMLSKK  239 (512)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~  239 (512)
                      +...+..+..++.+.|++++|+..|++..+..... +...+            ......+.+.|++++|...|+++... 
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-  380 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-  380 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            55666777777777777777777777766543211 11111            11233456677777777777777654 


Q ss_pred             CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------C
Q 010342          240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-------A  312 (512)
Q Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~  312 (512)
                      .+.+...+..+...+...|++++|++.|+...+..+. +...+..+...+. .++.++|..+++.+......       .
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~  458 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERS  458 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            2334445556667777777777777777777765432 3444445555443 23455555555443221100       0


Q ss_pred             CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 010342          313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV  392 (512)
Q Consensus       313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  392 (512)
                      .....+..+...+...|++++|+..|++.+...  +.++..+..+...|.+.|++++|...++++.+.. +.+...+..+
T Consensus       459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~  535 (1157)
T PRK11447        459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAY  535 (1157)
T ss_pred             hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence            001122334455566777777777777765433  2344555666667777777777777777776532 2233322222


Q ss_pred             --------------------------------------------HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342          393 --------------------------------------------IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI  428 (512)
Q Consensus       393 --------------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  428 (512)
                                                                  ...+...|+.++|..+++.     .+.+...+..+.
T Consensus       536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La  610 (1157)
T PRK11447        536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLA  610 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHH
Confidence                                                        2334445555555555541     244555677788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhccCCC
Q 010342          429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN  506 (512)
Q Consensus       429 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~  506 (512)
                      ..+.+.|++++|++.|++.++.. +.+...+..++..+...|++++|.+.++...+  ..|+ ..++..+..++...|+
T Consensus       611 ~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~  686 (1157)
T PRK11447        611 DWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGD  686 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCC
Confidence            88999999999999999998875 33677888999999999999999999998876  3454 3455556666665554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.93  E-value=3.3e-20  Score=182.71  Aligned_cols=476  Identities=12%  Similarity=0.015  Sum_probs=243.5

Q ss_pred             ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342            6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV   85 (512)
Q Consensus         6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   85 (512)
                      ..|++++|+..|+...+..+. +..++..|...|.+.|++++|+..+++..+.  .|+...|..++..+   +++++|..
T Consensus        56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~  129 (987)
T PRK09782         56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT  129 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence            459999999999999998555 5788999999999999999999999999986  35554444444333   88888888


Q ss_pred             HHHHHHHHhhhcCCCC-------------------------------c--chHhHHHH-HHHHHccCChhHHHHHHHhcC
Q 010342           86 LMFKLWERMKEEEDLS-------------------------------V--NNAAFANL-VDSLCREGYVNEVFRIAEDMP  131 (512)
Q Consensus        86 ~~~~~~~~~~~~~~~~-------------------------------~--~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~  131 (512)
                      ++++++...|......                               |  ...+.... .+.|...|++++|++++.++.
T Consensus       130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~  209 (987)
T PRK09782        130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR  209 (987)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            8888877655432211                               1  12222222 445555555555555555555


Q ss_pred             CCCCCCcchhHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCC-Cch
Q 010342          132 QGKSVNEEFACGHMIDSLCR-SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-PSE  209 (512)
Q Consensus       132 ~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~  209 (512)
                      +.++ .+......+..+|.. .++ +.+..+++.    .++-++..+..+...+.+.|+.++|.+.++++...-.. |..
T Consensus       210 k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~  283 (987)
T PRK09782        210 QQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE  283 (987)
T ss_pred             hcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence            5543 222233334444444 244 444444332    12235566667777777888888888877775432100 111


Q ss_pred             hhH------------------------------HHHHHHHhcc-------------------------------------
Q 010342          210 HTY------------------------------KVLVEGLCGE-------------------------------------  222 (512)
Q Consensus       210 ~~~------------------------------~~l~~~~~~~-------------------------------------  222 (512)
                      .++                              ..++..+.+.                                     
T Consensus       284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  363 (987)
T PRK09782        284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR  363 (987)
T ss_pred             HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence            111                              0011222222                                     


Q ss_pred             --------------------------CCHHHHHHHHHHHHhC-C-CCCCcccHHHHHHHHHccCC---hhhHHHH-----
Q 010342          223 --------------------------SDLEKARKVLQFMLSK-K-DVDRTRICNIYLRALCLIKN---PTELLNV-----  266 (512)
Q Consensus       223 --------------------------g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~-----  266 (512)
                                                |+.++|.++++..... + ...+......++..|.+.+.   ..++..+     
T Consensus       364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~  443 (987)
T PRK09782        364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP  443 (987)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence                                      3333333333333221 0 00111123344445544433   2222111     


Q ss_pred             -----------------HHHHHhc-CC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342          267 -----------------LVFMLQT-QC-QP--DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL  325 (512)
Q Consensus       267 -----------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  325 (512)
                                       +...... +. ++  +...|..+..++.. ++.++|...+.+.....   |+......+...+
T Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al  519 (987)
T PRK09782        444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQA  519 (987)
T ss_pred             cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHH
Confidence                             1111111 11 22  34455555555554 56666666555555432   3333333333344


Q ss_pred             hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342          326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA  405 (512)
Q Consensus       326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  405 (512)
                      ...|++++|...+++++..   +|+...+..+...+.+.|++++|...+++..+.. +.+...+..+.......|++++|
T Consensus       520 ~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA  595 (987)
T PRK09782        520 YQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA  595 (987)
T ss_pred             HHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence            4566666666666553321   2333334444455555666666666666555542 22222222222333334566666


Q ss_pred             HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      ...+++.++..  |+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++...|++++|++.+++..+ 
T Consensus       596 l~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~-  671 (987)
T PRK09782        596 LNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK-  671 (987)
T ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence            66666555432  344555555555556666666666665555543 22344555555555555666666665555554 


Q ss_pred             CCCC-ChHHHHHHHHhhccCCC
Q 010342          486 GLNP-DAVTWRILDKLHGNRGN  506 (512)
Q Consensus       486 ~~~p-~~~~~~~l~~~~~~~g~  506 (512)
                       ..| +...+..+..++...|+
T Consensus       672 -l~P~~~~a~~nLA~al~~lGd  692 (987)
T PRK09782        672 -GLPDDPALIRQLAYVNQRLDD  692 (987)
T ss_pred             -hCCCCHHHHHHHHHHHHHCCC
Confidence             233 23344445455544443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=4.8e-22  Score=174.61  Aligned_cols=436  Identities=12%  Similarity=0.054  Sum_probs=344.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV  111 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~  111 (512)
                      ...|.+-..+.|++.+|++--.-.-..+ +.+....-.+-..+.+..+++...+.-....+      ....-..+|+.+.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r------~~~q~ae~ysn~a  123 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR------KNPQGAEAYSNLA  123 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhh------ccchHHHHHHHHH
Confidence            3455566667888888888766554432 22333333344555566666655433222222      2333467899999


Q ss_pred             HHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchH-HHHHHHHhccCch
Q 010342          112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY-NSIVHGLCKHGGC  190 (512)
Q Consensus       112 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~~~~  190 (512)
                      ..+-..|++++|+.+++.+.+..+ .....|..+..++...|+.+.|.+.|....+.  .|+.... ..+.......|+.
T Consensus       124 N~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl  200 (966)
T KOG4626|consen  124 NILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRL  200 (966)
T ss_pred             HHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhccc
Confidence            999999999999999999888764 45678999999999999999999999998876  4444433 3344455568999


Q ss_pred             hHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHH
Q 010342          191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM  270 (512)
Q Consensus       191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  270 (512)
                      ++|...|.++++.. +--...|+.|...+-..|+...|...|++.... .+.-...|..+...|...+.++.|...+...
T Consensus       201 ~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA  278 (966)
T KOG4626|consen  201 EEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-DPNFLDAYINLGNVYKEARIFDRAVSCYLRA  278 (966)
T ss_pred             chhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC-CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence            99999999988753 223567889999999999999999999998743 3344678889999999999999999999888


Q ss_pred             HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC
Q 010342          271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG  350 (512)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  350 (512)
                      ....+. ....+..+...|...|.++.|+..+++..+..  +.-...|+.+..++-..|+..+|.+.+.+.+.-.  +..
T Consensus       279 l~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~h  353 (966)
T KOG4626|consen  279 LNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNH  353 (966)
T ss_pred             HhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--Ccc
Confidence            776433 45667777778899999999999999999876  5667889999999999999999999999977554  333


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-HHhHHHHHH
Q 010342          351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD-NYVYAAMIK  429 (512)
Q Consensus       351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~  429 (512)
                      ....+.|...+...|.++.|..+|....+-. +--...++.|...|-..|++++|...+++.++.  .|+ ...++.+..
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGn  430 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGN  430 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcch
Confidence            5578899999999999999999999988742 333457899999999999999999999999874  454 458899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010342          430 GLCRSGKIHEAVHFLYELVDSGVTPN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA  491 (512)
Q Consensus       430 ~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~  491 (512)
                      .|-..|+.+.|.+.+.+.+..  .|. ....+.|...|-.+|+..+|++-++..++  ++||.
T Consensus       431 t~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf  489 (966)
T KOG4626|consen  431 TYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF  489 (966)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence            999999999999999998875  443 56788999999999999999999999987  67774

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=6e-22  Score=182.47  Aligned_cols=301  Identities=12%  Similarity=0.043  Sum_probs=191.8

Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCc---hhhHHHHHHHHhccCCH
Q 010342          149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS---EHTYKVLVEGLCGESDL  225 (512)
Q Consensus       149 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~  225 (512)
                      +...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++   ...+..+...+...|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            3444555555555555555421 1333455555555555555555555555544321111   12334444444445555


Q ss_pred             HHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM  305 (512)
Q Consensus       226 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  305 (512)
                      +.|..+|+.+                                   .+.. +++..++..++..+.+.|++++|.+.++.+
T Consensus       124 ~~A~~~~~~~-----------------------------------l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  167 (389)
T PRK11788        124 DRAEELFLQL-----------------------------------VDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL  167 (389)
T ss_pred             HHHHHHHHHH-----------------------------------HcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            5555555444                                   4332 235566777777788888888888888877


Q ss_pred             hhCCCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 010342          306 VAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV  382 (512)
Q Consensus       306 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  382 (512)
                      .+.....+.   ...+..+...+.+.|++++|...+.++++..  +.+...+..+...+.+.|++++|..+++++.+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP  245 (389)
T ss_pred             HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence            765421111   1234556667777888888888887765432  33445666777788888888888888888876532


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 010342          383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV  462 (512)
Q Consensus       383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  462 (512)
                      .....++..++.+|...|++++|...++++.+.  .|+...+..++..+.+.|++++|..+++++.+.  .|+...+..+
T Consensus       246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l  321 (389)
T PRK11788        246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL  321 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence            222456777888888888888888888888765  355556677888888888888888888888775  5777777777


Q ss_pred             HHHHHh---cCCHHHHHHHHHHHHHCCCCCChH
Q 010342          463 IDGACK---LSMKREAYQILREMRKNGLNPDAV  492 (512)
Q Consensus       463 ~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~  492 (512)
                      +..+..   .|+.+++..++++|.+.++.|++.
T Consensus       322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            776664   457888888888888777777665

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.92  E-value=5.1e-20  Score=178.29  Aligned_cols=255  Identities=12%  Similarity=0.044  Sum_probs=125.3

Q ss_pred             CchhHHHHHHHHHHhCC-CCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHH
Q 010342          188 GGCMRAYQLLEEGIQFG-YLP-SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN  265 (512)
Q Consensus       188 ~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  265 (512)
                      +++++|.+.|+.+.+.+ ..| ....+..+...+...|++++|...+++..+. .+.....+..+...+...|++++|..
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-DPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            45566666666665543 112 3344555555555666666666666665542 22223344445555555555555555


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC
Q 010342          266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR  345 (512)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  345 (512)
                      .++...+..+ .+...+..+...+...|++++|+..|++.....  +.+...+..+...+.+.|++++|+..|.+.+...
T Consensus       387 ~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  463 (615)
T TIGR00990       387 DFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF  463 (615)
T ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            5555554432 234455555555555555555555555555443  3344445555555555555555555555544322


Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 010342          346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST------TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH  419 (512)
Q Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  419 (512)
                        +.+...++.+...+...|++++|...|++..+.....+..      .++.....+...|++++|..++++....+ +.
T Consensus       464 --P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~  540 (615)
T TIGR00990       464 --PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PE  540 (615)
T ss_pred             --CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC
Confidence              2234445555555555555555555555555432110000      01111112223455555555555554432 22


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       420 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      +...+..+...+...|++++|.+.|++..+
T Consensus       541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       541 CDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            333455555555555555555555555544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.92  E-value=3e-20  Score=171.70  Aligned_cols=489  Identities=11%  Similarity=0.030  Sum_probs=306.5

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTG---EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD   79 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~   79 (512)
                      +|.+.|+.+.|+..|++..+.++ .++.++-.|...-....   .+..++.++...-... +-|+...+.|-.-+...|+
T Consensus       208 Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d  285 (1018)
T KOG2002|consen  208 CFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD  285 (1018)
T ss_pred             HHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence            56788888888888888888744 24444444443333333   3556777777766543 4588889999999999999


Q ss_pred             hhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHH
Q 010342           80 VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS  159 (512)
Q Consensus        80 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  159 (512)
                      ++.++.+...++..+.   .-..-...|-.+.++|-..|++++|...|.+..+.........+..+...+.+.|+.+.+.
T Consensus       286 y~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~  362 (1018)
T KOG2002|consen  286 YERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK  362 (1018)
T ss_pred             HHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH
Confidence            9999998887776542   2233445677799999999999999999999887664333455666889999999999999


Q ss_pred             HHHHHHHHcCCCCCcchHHHHHHHHhccC----chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010342          160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHG----GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM  235 (512)
Q Consensus       160 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  235 (512)
                      ..|+.+.... +-+..+.-.|...|+..+    ..+.|..++.+..+.- +.|...|..+...+.. ++...++.+|..+
T Consensus       363 ~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A  439 (1018)
T KOG2002|consen  363 FCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNA  439 (1018)
T ss_pred             HHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHH
Confidence            9999998863 225667777877777765    4566777777766543 4567777777766654 4444446666544


Q ss_pred             ----HhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc---CCCCCh------hhHHHHHHHHHhcCCHHHHHHHH
Q 010342          236 ----LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT---QCQPDV------ITLNTVINGFCKMGRIEEALKVL  302 (512)
Q Consensus       236 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~  302 (512)
                          ...+..+++...+.+...+...|++++|...|......   ...++.      .+--.+..++...++.+.|.+.|
T Consensus       440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y  519 (1018)
T KOG2002|consen  440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY  519 (1018)
T ss_pred             HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence                34566677888999999999999999999888877655   122232      12233455566667788888888


Q ss_pred             HHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-C
Q 010342          303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-G  381 (512)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~  381 (512)
                      ..+.+..  +.-+..|..++...-..+...+|..++.+.+......|+  .+..+...+.....+..|..-|....+. .
T Consensus       520 k~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~--arsl~G~~~l~k~~~~~a~k~f~~i~~~~~  595 (1018)
T KOG2002|consen  520 KSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN--ARSLLGNLHLKKSEWKPAKKKFETILKKTS  595 (1018)
T ss_pred             HHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH--HHHHHHHHHHhhhhhcccccHHHHHHhhhc
Confidence            8887664  334444555544444456667777777776655544444  3333444455555555555544444331 1


Q ss_pred             CCCChHhHHHHHHHHHh------------cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          382 VVADSTTYAIVIDGLCE------------SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       382 ~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      ..+|..+.-.|.+.|..            .+..++|+++|.++++.+ +.|...-|.+.-.++..|++.+|..+|.+.++
T Consensus       596 ~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE  674 (1018)
T KOG2002|consen  596 TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVRE  674 (1018)
T ss_pred             cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence            12344444444443321            123455555555555443 44555555555555555666666666655555


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHhhccCC
Q 010342          450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-GLNPDAVTWRILDKLHGNRG  505 (512)
Q Consensus       450 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g  505 (512)
                      ... -...+|..+..+|..+|+|..|+++|+...+. .-.-+......|.+++-..|
T Consensus       675 a~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~  730 (1018)
T KOG2002|consen  675 ATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG  730 (1018)
T ss_pred             HHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence            432 13345555555666666666666665554432 22223444555555554443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=2.8e-21  Score=169.84  Aligned_cols=367  Identities=14%  Similarity=0.045  Sum_probs=202.0

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010342           29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA  108 (512)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (512)
                      ..+|..+...+-..|+++.|+.+++.+.+.. +.....|..+..++...|+.+.|.+.+.+.++..|....      ..+
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c------a~s  188 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC------ARS  188 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh------hhc
Confidence            3455566666666666666666666666542 123455666666666666666666665555443222111      111


Q ss_pred             HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHhcc
Q 010342          109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKH  187 (512)
Q Consensus       109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~  187 (512)
                      .+...+-..|++++|...+.+.....+ --..+|+.|...+-.+|+...|++.|++....  .|+ ...|..|...|...
T Consensus       189 ~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~  265 (966)
T KOG4626|consen  189 DLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEA  265 (966)
T ss_pred             chhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHH
Confidence            234444455666666665555443322 22345556666666666666666666666554  232 34566666666666


Q ss_pred             CchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHH
Q 010342          188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL  267 (512)
Q Consensus       188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  267 (512)
                      +.+++|...|.++.... +.....+..+...|...|+++.|...|++..+. .+.-+..|+.+..++-..|+..+|.+.+
T Consensus       266 ~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cY  343 (966)
T KOG4626|consen  266 RIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCY  343 (966)
T ss_pred             hcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence            66666666666655432 223445555666666666666666666666532 2333445666666666666666666666


Q ss_pred             HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC
Q 010342          268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY  347 (512)
Q Consensus       268 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  347 (512)
                      ...+...+. .....+.|...+...|.++.|..+|....+..  +.-....+.|...|-+.|+.++|+..+.+.++   +
T Consensus       344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I  417 (966)
T KOG4626|consen  344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---I  417 (966)
T ss_pred             HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---c
Confidence            665554332 34455556666666666666666666555433  33344555566666666666666666655432   2


Q ss_pred             CCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 010342          348 SPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW  414 (512)
Q Consensus       348 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  414 (512)
                      .|+ ...|+.+...|-..|+.+.|.+.+.+....+ +.-...++.|...|-..|++.+|+.-+++.++
T Consensus       418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk  484 (966)
T KOG4626|consen  418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK  484 (966)
T ss_pred             CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence            333 3445555556666666666666666555432 22233555566666666666666666666554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=5.6e-20  Score=177.20  Aligned_cols=330  Identities=12%  Similarity=0.036  Sum_probs=188.5

Q ss_pred             HHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc
Q 010342          110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG  189 (512)
Q Consensus       110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~  189 (512)
                      ++..+.+.|++++|..+++......+.+. ..+..++.+....|+++.|.+.++.+....+. +...+..+...+...|+
T Consensus        48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~  125 (656)
T PRK15174         48 FAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ  125 (656)
T ss_pred             HHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Confidence            44555566666666666666555544332 23333445555566666666666666655322 34455666666666666


Q ss_pred             hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHH
Q 010342          190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF  269 (512)
Q Consensus       190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  269 (512)
                      +++|...++++.+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.
T Consensus       126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~  202 (656)
T PRK15174        126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARA  202 (656)
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence            666666666666542 33445556666666666666666666665543321 222222222 235556666666666666


Q ss_pred             HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHH----HHHHHHhhcccC
Q 010342          270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE----ALNLLYQVMPQR  345 (512)
Q Consensus       270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~  345 (512)
                      +.+....++......+..++...|++++|+..+++.....  +.+...+..+...+...|++++    |...+++.+...
T Consensus       203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            6555433333334444556666677777777776666554  4455566666666666666664    566666655332


Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH
Q 010342          346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA  425 (512)
Q Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  425 (512)
                        +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++...+ +.+...+.
T Consensus       281 --P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~  356 (656)
T PRK15174        281 --SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNR  356 (656)
T ss_pred             --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence              3344556666666666777777777776666643 3344455566666666777777777776665542 22222333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          426 AMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       426 ~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .+..++...|+.++|...|++..+.
T Consensus       357 ~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        357 YAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3455566667777777777666654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=1e-20  Score=174.36  Aligned_cols=307  Identities=14%  Similarity=0.032  Sum_probs=239.6

Q ss_pred             HHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---cchHHHHHHHHhcc
Q 010342          111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS---LVSYNSIVHGLCKH  187 (512)
Q Consensus       111 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~  187 (512)
                      ...+...|++++|...|+++...++ .+..++..+...+...|++++|..+++.+...+..++   ..++..+...+...
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            4456788999999999999998764 4556788899999999999999999999987532221   24678889999999


Q ss_pred             CchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHH
Q 010342          188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL  267 (512)
Q Consensus       188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  267 (512)
                      |++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+...+..+...                      
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------------------  177 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----------------------  177 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------------
Confidence            99999999999998753 4567889999999999999999999999987643211100                      


Q ss_pred             HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC
Q 010342          268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY  347 (512)
Q Consensus       268 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  347 (512)
                               .....+..+...+.+.|++++|...|+++.+..  +.+...+..+...+.+.|++++|.+.+.++.... .
T Consensus       178 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p  245 (389)
T PRK11788        178 ---------EIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-P  245 (389)
T ss_pred             ---------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-h
Confidence                     011234556667778888888888888887654  4456677778888888888888888888865332 1


Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 010342          348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM  427 (512)
Q Consensus       348 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  427 (512)
                      .....++..++.+|...|++++|...++++.+.  .|+...+..++..+.+.|++++|..+++++.+.  .|+...++.+
T Consensus       246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l  321 (389)
T PRK11788        246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL  321 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence            112356778888899999999999999998875  456666788889999999999999999988765  5777788888


Q ss_pred             HHHHHh---cCCHHHHHHHHHHHHHCCCCCChh
Q 010342          428 IKGLCR---SGKIHEAVHFLYELVDSGVTPNIV  457 (512)
Q Consensus       428 ~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~  457 (512)
                      +..+..   .|+.+++..+++++.+.++.|++.
T Consensus       322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            877664   458889999999999877777765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.90  E-value=4.9e-19  Score=170.70  Aligned_cols=360  Identities=12%  Similarity=0.040  Sum_probs=284.1

Q ss_pred             HHccCChhHHHHHHHhcCCCCCC--CcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchh
Q 010342          114 LCREGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM  191 (512)
Q Consensus       114 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~  191 (512)
                      +.+..+++...-.|....++...  .+......++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~   93 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD   93 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence            34556666666666555443211  12223344667788999999999999999987544 4456666677778899999


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHH
Q 010342          192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML  271 (512)
Q Consensus       192 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  271 (512)
                      .|.+.++++.+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...++.+.
T Consensus        94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~  171 (656)
T PRK15174         94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQA  171 (656)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            9999999999864 556778888999999999999999999999864 45556788888999999999999999999887


Q ss_pred             hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh
Q 010342          272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI  351 (512)
Q Consensus       272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  351 (512)
                      ...+.+ ...+..+ ..+...|++++|...++.+..... .++......+...+...|++++|...+.+.+...  +.+.
T Consensus       172 ~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~  246 (656)
T PRK15174        172 QEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGA  246 (656)
T ss_pred             HhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCH
Confidence            765443 3333333 347889999999999999877642 2344455566778899999999999999977543  4456


Q ss_pred             hhHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHH
Q 010342          352 VTYNAVLRGLFRLRRVEE----AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM  427 (512)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  427 (512)
                      ..+..+...+...|++++    |...|++..+.. +.+...+..+...+...|++++|...++++.... +.+...+..+
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L  324 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY  324 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            778888999999999986    899999999864 5567789999999999999999999999998765 5566778889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          428 IKGLCRSGKIHEAVHFLYELVDSGVTPNI-VCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      ..++...|++++|...++++.+.+  |+. ..+..+..++...|++++|...+++..+.
T Consensus       325 a~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        325 ARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999999998864  443 33444577889999999999999998763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.89  E-value=5.4e-18  Score=167.30  Aligned_cols=403  Identities=12%  Similarity=0.001  Sum_probs=279.3

Q ss_pred             hhhHHHH-HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHc-cCChhHHHHHHHhcCCCCCCCcchh
Q 010342           64 SLTYSVL-VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR-EGYVNEVFRIAEDMPQGKSVNEEFA  141 (512)
Q Consensus        64 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~  141 (512)
                      +.+.... ...|...+++++++..+.++.+.      ...+......|..+|.. .++ +++..+++.    ....+...
T Consensus       181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~------~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l  249 (987)
T PRK09782        181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQ------NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQS  249 (987)
T ss_pred             cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHH
Confidence            4334444 67778888888888877766543      22334446667778887 477 888888553    22356778


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCcchHHH------------------------------HHHHHhc----
Q 010342          142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLT-PSLVSYNS------------------------------IVHGLCK----  186 (512)
Q Consensus       142 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~------------------------------l~~~~~~----  186 (512)
                      +..+...|.+.|+.++|.++++.+...-.. |...+|..                              ++..+.+    
T Consensus       250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (987)
T PRK09782        250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY  329 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence            889999999999999999999997543211 22122110                              1112222    


Q ss_pred             -----------------------------------------------------------cCchhHHHHHHHHHHhC--CC
Q 010342          187 -----------------------------------------------------------HGGCMRAYQLLEEGIQF--GY  205 (512)
Q Consensus       187 -----------------------------------------------------------~~~~~~a~~~~~~~~~~--~~  205 (512)
                                                                                 .|+.++|.++++.....  ..
T Consensus       330 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~  409 (987)
T PRK09782        330 DAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA  409 (987)
T ss_pred             HHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence                                                                       33344444444444331  01


Q ss_pred             CCchhhHHHHHHHHhccCC---HHHHHHH----------------------HHHHHhC--CCCC--CcccHHHHHHHHHc
Q 010342          206 LPSEHTYKVLVEGLCGESD---LEKARKV----------------------LQFMLSK--KDVD--RTRICNIYLRALCL  256 (512)
Q Consensus       206 ~~~~~~~~~l~~~~~~~g~---~~~a~~~----------------------~~~~~~~--~~~~--~~~~~~~l~~~~~~  256 (512)
                      .++.....-++..|.+.+.   ...+..+                      ++.+...  ..++  ....+..+..++..
T Consensus       410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~  489 (987)
T PRK09782        410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD  489 (987)
T ss_pred             ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence            1223334456666666655   2223222                      1111111  1233  45567777777776


Q ss_pred             cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 010342          257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN  336 (512)
Q Consensus       257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  336 (512)
                       +++++|...+.......  |+......+...+...|++++|...|+++...   +|+...+..+...+.+.|+.++|..
T Consensus       490 -~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~  563 (987)
T PRK09782        490 -TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDR  563 (987)
T ss_pred             -CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence             78888999888777664  45444444455567899999999999998654   3444556677788899999999999


Q ss_pred             HHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342          337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS  416 (512)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  416 (512)
                      .+.+.+...  +++...+..+.......|++++|...+++..+.  .|+...+..+..++.+.|++++|...+++.....
T Consensus       564 ~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~  639 (987)
T PRK09782        564 WLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE  639 (987)
T ss_pred             HHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999876443  333333334444455669999999999999985  4678889999999999999999999999999875


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010342          417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA  491 (512)
Q Consensus       417 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~  491 (512)
                       +.+...+..+..++...|++++|+..+++..+..+ -+...+..+..++...|++++|+..+++..+  +.|+.
T Consensus       640 -Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~  710 (987)
T PRK09782        640 -PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ  710 (987)
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence             66777889999999999999999999999998753 3678899999999999999999999999987  45654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.89  E-value=9.2e-18  Score=162.23  Aligned_cols=430  Identities=11%  Similarity=0.041  Sum_probs=248.5

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHH--HHHHHhcCCh
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL-TYSVL--VRGVLRTRDV   80 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l--~~~~~~~~~~   80 (512)
                      ..++|+++.|+..|++..+..+.-.+..+ .++..+...|+.++|+..+++...    |+.. .+..+  ...+...|++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdy  118 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRW  118 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCH
Confidence            35788888888888888876332112233 777777788888888888888872    3222 22222  4567777888


Q ss_pred             hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHH
Q 010342           81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR  160 (512)
Q Consensus        81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  160 (512)
                      ++|.++++++++..|..      ...+..++..+...++.++|++.++++....  |+...+..++..+...++..+|++
T Consensus       119 d~Aiely~kaL~~dP~n------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~  190 (822)
T PRK14574        119 DQALALWQSSLKKDPTN------PDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQ  190 (822)
T ss_pred             HHHHHHHHHHHhhCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHH
Confidence            88888888877654432      3444566777888888888888888887765  334444444444444566656888


Q ss_pred             HHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhH------HHHHHHH---h--ccCC---HH
Q 010342          161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY------KVLVEGL---C--GESD---LE  226 (512)
Q Consensus       161 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~  226 (512)
                      .++++.+..+. +...+..+..++.+.|-...|+++..+-... +.+....+      ..+++.-   .  ....   .+
T Consensus       191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d  268 (822)
T PRK14574        191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD  268 (822)
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence            88888876422 5566677777888888877777766542210 11111000      1111100   0  1111   23


Q ss_pred             HHHHHHHHHHhCC--CCCCc----ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342          227 KARKVLQFMLSKK--DVDRT----RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK  300 (512)
Q Consensus       227 ~a~~~~~~~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  300 (512)
                      .|..-++.+...-  .++..    ....-.+-++...+++.++++.++.+...+.+....+-..+..+|...+.+++|..
T Consensus       269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~  348 (822)
T PRK14574        269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP  348 (822)
T ss_pred             HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence            3444444443311  11111    12223445556666677777777777666654445566666677777777777777


Q ss_pred             HHHHHhhCCC----CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC----------CCCh---hhHHHHHHHHHc
Q 010342          301 VLNDMVAGKF----CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY----------SPGI---VTYNAVLRGLFR  363 (512)
Q Consensus       301 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~---~~~~~l~~~~~~  363 (512)
                      +++.+.....    .+++......|..++...+++++|..+++++......          .|++   ..+..++..+..
T Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~  428 (822)
T PRK14574        349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA  428 (822)
T ss_pred             HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            7776654321    1223333456666677777777777766665432110          1111   122334455566


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 010342          364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF  443 (512)
Q Consensus       364 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  443 (512)
                      .|++.+|++.++++.... |-|......+.+.+...|.+.+|++.++...... +.+..+....+.++...|++.+|..+
T Consensus       429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~  506 (822)
T PRK14574        429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELL  506 (822)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHH
Confidence            666666666666666543 5566666666666666666666666665554432 44455555666666666666666666


Q ss_pred             HHHHHHC
Q 010342          444 LYELVDS  450 (512)
Q Consensus       444 ~~~~~~~  450 (512)
                      .+.+.+.
T Consensus       507 ~~~l~~~  513 (822)
T PRK14574        507 TDDVISR  513 (822)
T ss_pred             HHHHHhh
Confidence            6666554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.89  E-value=3.3e-18  Score=168.69  Aligned_cols=426  Identities=12%  Similarity=0.040  Sum_probs=258.9

Q ss_pred             ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010342           28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF  107 (512)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (512)
                      ++....-.+......|+.++|++++.+..... +.+...+..+..++...|++++|...+++++...|.      +...+
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~   86 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQ   86 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH
Confidence            45555666777778888888888888887522 344556777888888888888888887777654222      23445


Q ss_pred             HHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 010342          108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH  187 (512)
Q Consensus       108 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  187 (512)
                      ..++..+...|++++|...+++.....+ .+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...
T Consensus        87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~  163 (765)
T PRK10049         87 RGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN  163 (765)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence            5666777777777777777777766543 2333 666667777777777777777777765332 344555566666667


Q ss_pred             CchhHHHHHHHHHHhCCCCCch------hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh-
Q 010342          188 GGCMRAYQLLEEGIQFGYLPSE------HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP-  260 (512)
Q Consensus       188 ~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-  260 (512)
                      +..+.|++.++.+..   .|+.      .....++......+.                              ...+++ 
T Consensus       164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~  210 (765)
T PRK10049        164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYA  210 (765)
T ss_pred             CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHH
Confidence            777777777665543   2221      001111111110000                              001111 


Q ss_pred             --hhHHHHHHHHHhc-CCCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH
Q 010342          261 --TELLNVLVFMLQT-QCQPDVI-TLN----TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ  332 (512)
Q Consensus       261 --~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  332 (512)
                        ++|+..++.+.+. ...|+.. .+.    ..+..+...|++++|+..|+.+.+.+...|+. ....+...+...|+++
T Consensus       211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e  289 (765)
T PRK10049        211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE  289 (765)
T ss_pred             HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence              3444444444432 1112111 111    11233445577777777777777654211222 2222456677777777


Q ss_pred             HHHHHHHhhcccCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----------CCC---hHhHHHHHHHH
Q 010342          333 EALNLLYQVMPQRGYSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-----------VAD---STTYAIVIDGL  396 (512)
Q Consensus       333 ~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~  396 (512)
                      +|+..|.+.+......+  .......+..++...|++++|..+++.+.+...           .|+   ...+..+...+
T Consensus       290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l  369 (765)
T PRK10049        290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA  369 (765)
T ss_pred             HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence            77777777553322111  123344555566777778888777777766420           122   12345566777


Q ss_pred             HhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010342          397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY  476 (512)
Q Consensus       397 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  476 (512)
                      ...|++++|.++++++.... +.+...+..++..+...|++++|++.+++..+.. +.+...+...+..+.+.|++++|.
T Consensus       370 ~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~  447 (765)
T PRK10049        370 KYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMD  447 (765)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence            88888888888888887654 5667788888888888888888888888888764 224566667777888888888888


Q ss_pred             HHHHHHHHCCCCCChHHHHHHHHhh
Q 010342          477 QILREMRKNGLNPDAVTWRILDKLH  501 (512)
Q Consensus       477 ~~~~~m~~~~~~p~~~~~~~l~~~~  501 (512)
                      .+++++++  ..|+......|-+.+
T Consensus       448 ~~~~~ll~--~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        448 VLTDDVVA--REPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHH--hCCCCHHHHHHHHHH
Confidence            88888887  456655544444333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.89  E-value=4.6e-18  Score=167.68  Aligned_cols=403  Identities=10%  Similarity=-0.007  Sum_probs=259.5

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA   83 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a   83 (512)
                      ....|+.++|++++.+..... +.+...+..+...+.+.|++++|..++++..+.. +.+...+..+..++...|+.++|
T Consensus        25 a~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA  102 (765)
T PRK10049         25 ALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEA  102 (765)
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            456899999999999998742 3356679999999999999999999999998763 34567788888899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH
Q 010342           84 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY  163 (512)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (512)
                      ...+.++++..|..      .. +..+..++...|+.++|...++++.+..+. +...+..+..++...+..+.|++.++
T Consensus       103 ~~~l~~~l~~~P~~------~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~  174 (765)
T PRK10049        103 LVKAKQLVSGAPDK------AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID  174 (765)
T ss_pred             HHHHHHHHHhCCCC------HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            99998887653332      33 777888999999999999999999887653 44555667888888999999999887


Q ss_pred             HHHHcCCCCCc------chHHHHHHHHhc-----cCch---hHHHHHHHHHHhC-CCCCchh-hHH----HHHHHHhccC
Q 010342          164 VMRKRGLTPSL------VSYNSIVHGLCK-----HGGC---MRAYQLLEEGIQF-GYLPSEH-TYK----VLVEGLCGES  223 (512)
Q Consensus       164 ~~~~~g~~p~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g  223 (512)
                      ....   .|+.      .....+++....     .+++   ++|++.++.+.+. ...|+.. .+.    ..+..+...|
T Consensus       175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g  251 (765)
T PRK10049        175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD  251 (765)
T ss_pred             hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence            6664   2331      011112222211     1122   4455555555532 1112111 110    0012233445


Q ss_pred             CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN  303 (512)
Q Consensus       224 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  303 (512)
                      ++++|...|+.+...+.+.                                  |+. ....+...|...|++++|+..|+
T Consensus       252 ~~~eA~~~~~~ll~~~~~~----------------------------------P~~-a~~~la~~yl~~g~~e~A~~~l~  296 (765)
T PRK10049        252 RYKDVISEYQRLKAEGQII----------------------------------PPW-AQRWVASAYLKLHQPEKAQSILT  296 (765)
T ss_pred             hHHHHHHHHHHhhccCCCC----------------------------------CHH-HHHHHHHHHHhcCCcHHHHHHHH
Confidence            5555555555554432110                                  111 11113445555555555555555


Q ss_pred             HHhhCCCCCC--cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCC----------CCCCh---hhHHHHHHHHHccCCHH
Q 010342          304 DMVAGKFCAP--DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG----------YSPGI---VTYNAVLRGLFRLRRVE  368 (512)
Q Consensus       304 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~~~~~  368 (512)
                      ++.......+  .......+..++...|++++|...+.++.....          ..|+.   ..+..+...+...|+++
T Consensus       297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~  376 (765)
T PRK10049        297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP  376 (765)
T ss_pred             HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence            5543321000  122334444455555666666655555432211          12231   23455666777888999


Q ss_pred             HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       369 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      +|+.+++++.... |.+...+..+...+...|++++|++.+++++... +.+...+..++..+...|++++|..++++++
T Consensus       377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll  454 (765)
T PRK10049        377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVV  454 (765)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999988888763 5667788888888888899999999999887754 4456677777778888889999999998888


Q ss_pred             HCCCCCChhh
Q 010342          449 DSGVTPNIVC  458 (512)
Q Consensus       449 ~~~~~p~~~~  458 (512)
                      +.  .|+...
T Consensus       455 ~~--~Pd~~~  462 (765)
T PRK10049        455 AR--EPQDPG  462 (765)
T ss_pred             Hh--CCCCHH
Confidence            75  455443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=4.6e-18  Score=164.78  Aligned_cols=369  Identities=10%  Similarity=-0.020  Sum_probs=250.3

Q ss_pred             HHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010342          107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK  186 (512)
Q Consensus       107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  186 (512)
                      +......+.+.|++++|+..|++.....  |+...|..+..+|.+.|++++|.+.+....+.... +...|..+..++..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence            3345566667777777777777665543  34556666667777777777777777776665322 44566666777777


Q ss_pred             cCchhHHHHHHHHHHhCCC-----------------------------CCchhhHHHHHHHHh-----------------
Q 010342          187 HGGCMRAYQLLEEGIQFGY-----------------------------LPSEHTYKVLVEGLC-----------------  220 (512)
Q Consensus       187 ~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~-----------------  220 (512)
                      .|++++|+..|..+...+.                             +++...+..+...+.                 
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL  286 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence            7777777655544332110                             111111111111110                 


Q ss_pred             -------------------ccCCHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCCh
Q 010342          221 -------------------GESDLEKARKVLQFMLSKK--DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV  279 (512)
Q Consensus       221 -------------------~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  279 (512)
                                         ..+++++|.+.|+...+.+  .+.....+..+...+...|++++|+..++..++..+. ..
T Consensus       287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~  365 (615)
T TIGR00990       287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT  365 (615)
T ss_pred             ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence                               0135677888888877654  2233446777777888888999999988888876432 45


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010342          280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR  359 (512)
Q Consensus       280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  359 (512)
                      ..|..+...+...|++++|...|++..+..  +.+...+..+...+...|++++|...|.+.+...  +.+...+..+..
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~  441 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGV  441 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHH
Confidence            577778888888899999999988887765  5667788888888888899999999888876443  344566777778


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH------hHHHHHHHHHh
Q 010342          360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY------VYAAMIKGLCR  433 (512)
Q Consensus       360 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~  433 (512)
                      .+.+.|++++|+..|++..+.. +.+...++.+..++...|++++|...|++.+......+..      .++..+..+..
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~  520 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW  520 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence            8888899999999998888753 5567788888888888999999999988887653211111      11222223334


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       434 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      .|++++|.+.+++..+..+ .+...+..+...+.+.|++++|.+.|++..+.
T Consensus       521 ~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       521 KQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            6888899998888877642 24456788888888899999999988888763

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.89  E-value=1.7e-17  Score=160.33  Aligned_cols=445  Identities=11%  Similarity=0.059  Sum_probs=324.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS--LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA  108 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (512)
                      +-..-+-...+.|+++.|+..|++..+.  .|+.  ..+ .++..+...|+.++|...+++...      ..........
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~------p~n~~~~~ll  106 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS------SMNISSRGLA  106 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc------CCCCCHHHHH
Confidence            3344444567899999999999999986  3554  234 888888889999999988877751      1122233344


Q ss_pred             HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 010342          109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG  188 (512)
Q Consensus       109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~  188 (512)
                      .+...+...|++++|+++++++.+..+. +...+..++..+...++.++|++.++.+...  .|+...+..++..+...+
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~  183 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD  183 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence            4466888999999999999999988763 3566677889999999999999999999886  455556655555555566


Q ss_pred             chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-----cHHHHHHHHH-----ccC
Q 010342          189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR-----ICNIYLRALC-----LIK  258 (512)
Q Consensus       189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~-----~~~  258 (512)
                      +..+|++.++++.+.. +.+...+..+.....+.|-...|.++.+.-...-...+..     .....++.-.     ...
T Consensus       184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~  262 (822)
T PRK14574        184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE  262 (822)
T ss_pred             hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence            7767999999999875 5577788888999999999999998876543111111100     0111111100     111


Q ss_pred             C---hhhHHHHHHHHHhc-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC
Q 010342          259 N---PTELLNVLVFMLQT-QCQPDV-ITL----NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG  329 (512)
Q Consensus       259 ~---~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  329 (512)
                      +   .+.++.-++.+... +..|.. ..|    .-.+-++...|++.++++.|+.+...+. +....+-.++..+|...+
T Consensus       263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~  341 (822)
T PRK14574        263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRR  341 (822)
T ss_pred             hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcC
Confidence            2   23455555555542 222322 122    2345677888999999999999998764 334557889999999999


Q ss_pred             CHHHHHHHHHhhcccCC----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----------CCCh---HhHHH
Q 010342          330 RIQEALNLLYQVMPQRG----YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-----------VADS---TTYAI  391 (512)
Q Consensus       330 ~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~  391 (512)
                      ++++|..++.++....+    .+++......|..++...+++++|..+++.+.+...           .|++   ..+..
T Consensus       342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l  421 (822)
T PRK14574        342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL  421 (822)
T ss_pred             CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence            99999999999776543    123344457789999999999999999999987311           1222   13445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010342          392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM  471 (512)
Q Consensus       392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  471 (512)
                      ++..+...|++.+|++.++++.... |-|......+...+...|.+.+|.+.++...... +-+..+....+.++...|+
T Consensus       422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e  499 (822)
T PRK14574        422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQE  499 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhh
Confidence            6778889999999999999998765 7799999999999999999999999998777663 3356777788899999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChHH
Q 010342          472 KREAYQILREMRKNGLNPDAVT  493 (512)
Q Consensus       472 ~~~a~~~~~~m~~~~~~p~~~~  493 (512)
                      +++|..+.+.+..  ..|+...
T Consensus       500 ~~~A~~~~~~l~~--~~Pe~~~  519 (822)
T PRK14574        500 WHQMELLTDDVIS--RSPEDIP  519 (822)
T ss_pred             HHHHHHHHHHHHh--hCCCchh
Confidence            9999999988876  4565443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.4e-18  Score=159.34  Aligned_cols=477  Identities=10%  Similarity=0.027  Sum_probs=353.3

Q ss_pred             CcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChhhHHH
Q 010342            8 SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL--PNSLTYSVLVRGVLRTRDVERANV   85 (512)
Q Consensus         8 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~   85 (512)
                      ..+..+..++.+.-..+.. |+.+.+.|...|.-.|++..+..+...+......  .-...|..+.+++-..|++++|..
T Consensus       250 ~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~  328 (1018)
T KOG2002|consen  250 DSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK  328 (1018)
T ss_pred             HHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            3456677777776665433 7888999999999999999999999998875311  123457788899999999999999


Q ss_pred             HHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcC----ChhhHHHH
Q 010342           86 LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG----RNHGASRV  161 (512)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~  161 (512)
                      .|.+.....+..     -...+-.|.+.+.+.|+++.+...|+.+....+ ....+...|...|...+    ..+.|..+
T Consensus       329 yY~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~  402 (1018)
T KOG2002|consen  329 YYMESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNV  402 (1018)
T ss_pred             HHHHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence            887765432221     123344588999999999999999999887654 34455566666666664    45667777


Q ss_pred             HHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHH----hCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010342          162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI----QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS  237 (512)
Q Consensus       162 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  237 (512)
                      +....+.- +.|...|..+...+....-+.. +..|..+.    ..+..+.+...+.+...+...|+++.|...|.....
T Consensus       403 l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~  480 (1018)
T KOG2002|consen  403 LGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG  480 (1018)
T ss_pred             HHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence            77766653 3367788888777766554444 77776554    345567888999999999999999999999998876


Q ss_pred             C---CCCCCc------ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010342          238 K---KDVDRT------RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG  308 (512)
Q Consensus       238 ~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  308 (512)
                      .   ...++.      .+-..+....-..++++.|...|..+.+..+. =+..|--+.......+...+|...+......
T Consensus       481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~  559 (1018)
T KOG2002|consen  481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNI  559 (1018)
T ss_pred             hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence            5   111121      12344556666788999999999999887422 1223333332333447788999999999887


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc------------cCCHHHHHHHHHH
Q 010342          309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR------------LRRVEEAKEVFNC  376 (512)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~  376 (512)
                      .  ..++..++.+...+.....+..|.+-|..........+|+.+.-.|...|.+            .+..++|+++|.+
T Consensus       560 d--~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k  637 (1018)
T KOG2002|consen  560 D--SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK  637 (1018)
T ss_pred             c--cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence            6  5666777778888999999998988777776666556777776667765543            3457789999999


Q ss_pred             HHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC
Q 010342          377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPN  455 (512)
Q Consensus       377 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~  455 (512)
                      .++.. |-|...-+.+.-+++..|++..|..+|..+.+.. .....+|-.+.++|..+|++..|+++|+...+. ...-+
T Consensus       638 vL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~  715 (1018)
T KOG2002|consen  638 VLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR  715 (1018)
T ss_pred             HHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            99875 6788888999999999999999999999998764 334558889999999999999999999887654 44557


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 010342          456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD  498 (512)
Q Consensus       456 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~  498 (512)
                      ..+...|.+++.+.|.+.+|.+.+.........-..+.|+..+
T Consensus       716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~  758 (1018)
T KOG2002|consen  716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL  758 (1018)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence            7889999999999999999999988887643222234455443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=1.3e-17  Score=141.78  Aligned_cols=463  Identities=11%  Similarity=0.077  Sum_probs=318.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV-LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL  110 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (512)
                      ...|.+.|..+..+.+|+..++-+.+...-|+...+.. +...+.+.+.+.+|+..++-.+++.|.- +........+.+
T Consensus       204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-nk~~rikil~ni  282 (840)
T KOG2003|consen  204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-NKDMRIKILNNI  282 (840)
T ss_pred             HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-chhhHHHHHhhc
Confidence            34456667777788999999999988877787765433 4567888999999999998888876653 223333456666


Q ss_pred             HHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcc------------hHH
Q 010342          111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV------------SYN  178 (512)
Q Consensus       111 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~------------~~~  178 (512)
                      .-.+.+.|.++.|+..|+.+.+..  |+..+-..|+-++..-|+.+...+.|.+|..-...||..            ..+
T Consensus       283 gvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~  360 (840)
T KOG2003|consen  283 GVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN  360 (840)
T ss_pred             CeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence            677889999999999999987765  555554456777778899999999999997653333322            222


Q ss_pred             HH-----HHHHhccC--chhHHHHHHHHHHhCCCCCchh-----hHHH----------------HHHHHhccCCHHHHHH
Q 010342          179 SI-----VHGLCKHG--GCMRAYQLLEEGIQFGYLPSEH-----TYKV----------------LVEGLCGESDLEKARK  230 (512)
Q Consensus       179 ~l-----~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-----~~~~----------------l~~~~~~~g~~~~a~~  230 (512)
                      ..     ++..-+.+  +.++++-.-.+++.--+.|+-.     ....                -.-.+.+.|+++.|.+
T Consensus       361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie  440 (840)
T KOG2003|consen  361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE  440 (840)
T ss_pred             HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence            22     22222211  1222222222333222233211     1111                1224678899999999


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHc--cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010342          231 VLQFMLSKKDVDRTRICNIYLRALCL--IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG  308 (512)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  308 (512)
                      +++-+.+++....+..-+.+-..+.-  -.++..|.+.-+..+... .-+......-.+.-...|++++|.+.+++....
T Consensus       441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n  519 (840)
T KOG2003|consen  441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN  519 (840)
T ss_pred             HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence            99998876655544444443333322  445666666666555332 112222222223334568999999999998854


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHh
Q 010342          309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT  388 (512)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  388 (512)
                      ..  .-....-.+.-.+-..|+.++|++.|.+.-  .-+..+......+...|-...+...|++++.+.... ++.|+.+
T Consensus       520 da--sc~ealfniglt~e~~~~ldeald~f~klh--~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i  594 (840)
T KOG2003|consen  520 DA--SCTEALFNIGLTAEALGNLDEALDCFLKLH--AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI  594 (840)
T ss_pred             ch--HHHHHHHHhcccHHHhcCHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence            31  112222223334667899999999987732  112345666777888888899999999999887764 5778889


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-
Q 010342          389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC-  467 (512)
Q Consensus       389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-  467 (512)
                      ...|.+.|-+.|+-..|.+.+-+--+ -++.+..+...|...|....-+++++.+|++..-  ++|+..-|..++..|. 
T Consensus       595 lskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r  671 (840)
T KOG2003|consen  595 LSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR  671 (840)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence            99999999999999999998776543 3577899999999999999999999999988654  5899999999887665 


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCCC
Q 010342          468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND  507 (512)
Q Consensus       468 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  507 (512)
                      +.|++++|.++++...+. ++.|...+..|++.+...|-.
T Consensus       672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence            589999999999998764 788889999999999888754

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.82  E-value=2.4e-14  Score=127.54  Aligned_cols=476  Identities=11%  Similarity=0.022  Sum_probs=353.1

Q ss_pred             cCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 010342            7 LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL   86 (512)
Q Consensus         7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   86 (512)
                      ..+.++|+.++.+..+-  .|.   -.-|..+|++..-|+.|..++++.++. ++-+...|......--..|+.+....+
T Consensus       389 lE~~~darilL~rAvec--cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki  462 (913)
T KOG0495|consen  389 LEEPEDARILLERAVEC--CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI  462 (913)
T ss_pred             ccChHHHHHHHHHHHHh--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence            34555677777777765  222   133455677778889999999999874 566888888777777788999998888


Q ss_pred             HHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCC--CcchhHHHHHHHHHhcCChhhHHHHHHH
Q 010342           87 MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYV  164 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (512)
                      +.+-+..+... ++..+...|-.=...|-+.|..-.+..+......-|+.  ....+|..-...|.+.+.++-|..+|..
T Consensus       463 i~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~  541 (913)
T KOG0495|consen  463 IDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH  541 (913)
T ss_pred             HHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence            88888777766 77788777777778888888888888887776665543  2346788888889999999999999988


Q ss_pred             HHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 010342          165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT  244 (512)
Q Consensus       165 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  244 (512)
                      ..+--+ -+...|......--..|..+....+++++...- +.....|......+-..||...|..++....+. .+.+.
T Consensus       542 alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~-~pnse  618 (913)
T KOG0495|consen  542 ALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-NPNSE  618 (913)
T ss_pred             HHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-CCCcH
Confidence            887532 255677777776667888899999999988753 455667777777778889999999999998864 44577


Q ss_pred             ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 010342          245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG  324 (512)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  324 (512)
                      .++...+........++.|..+|.+....  .|+...|..-++..--.++.++|++++++..+..  +.-...|-.+.+.
T Consensus       619 eiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi  694 (913)
T KOG0495|consen  619 EIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQI  694 (913)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHH
Confidence            78888889999999999999999888765  5577777777777777789999999999888764  4556778888888


Q ss_pred             HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  404 (512)
                      +-+.++.+.|.+.|..-.+.  ++-.+..|..+...--+.|.+-+|..++++..-.+ |-+...|-..|.+-.+.|+.+.
T Consensus       695 ~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~  771 (913)
T KOG0495|consen  695 EEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ  771 (913)
T ss_pred             HHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence            88999999999988764432  24455667777777778889999999999888765 6678889999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      |..+..++++. .+.+...|..-|....+.++-....+.+++.     .-|+.....+...|....++++|.+.|.+..+
T Consensus       772 a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk  845 (913)
T KOG0495|consen  772 AELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK  845 (913)
T ss_pred             HHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99888887754 2555556666666665555544444444332     33555666666777777777777777777766


Q ss_pred             CCCCCC-hHHHHHHHHhhccCCCC
Q 010342          485 NGLNPD-AVTWRILDKLHGNRGND  507 (512)
Q Consensus       485 ~~~~p~-~~~~~~l~~~~~~~g~~  507 (512)
                      .  .|| -.+|.-+.+.+...|.+
T Consensus       846 ~--d~d~GD~wa~fykfel~hG~e  867 (913)
T KOG0495|consen  846 K--DPDNGDAWAWFYKFELRHGTE  867 (913)
T ss_pred             c--CCccchHHHHHHHHHHHhCCH
Confidence            3  343 35666666666666643

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=4.5e-15  Score=125.55  Aligned_cols=432  Identities=16%  Similarity=0.140  Sum_probs=293.0

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342           29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR--TRDVERANVLMFKLWERMKEEEDLSVNNAA  106 (512)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (512)
                      +.+=|.|++. ..+|.+..+.-+|+.|...|+..+...-..|++...-  ..+..-++   .+.+-.|...+.-+..  +
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E---~~~Fv~~~~~~E~S~~--s  189 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAE---WEEFVGMRNFGEDSTS--S  189 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchh---HHHHhhcccccccccc--c
Confidence            3345666654 4678999999999999999987777776666654332  33332221   1122223222111111  1


Q ss_pred             HHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010342          107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK  186 (512)
Q Consensus       107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  186 (512)
                              -+.|.+.+  -+|+..+     .+..++..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-
T Consensus       190 --------WK~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~  254 (625)
T KOG4422|consen  190 --------WKSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY  254 (625)
T ss_pred             --------cccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence                    13344433  3444443     34468888999999988889999999888887777788888888876543


Q ss_pred             cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHH----HHHHHHHHhCCCCCCcccHHHHHHHHHccCChhh
Q 010342          187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE  262 (512)
Q Consensus       187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  262 (512)
                      ..    -.++..+|.+..+.||..|+|+++.+.++.|+++.|    .+++.+|++-|+.|....|..++..+++.+++.+
T Consensus       255 ~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k  330 (625)
T KOG4422|consen  255 SV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK  330 (625)
T ss_pred             hc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence            22    267888888888899999999999999998887664    5677778888899998899999988888887754


Q ss_pred             -HHHHHHHHHhc----CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCc---HHHHHHHHHHHhh
Q 010342          263 -LLNVLVFMLQT----QCQP----DVITLNTVINGFCKMGRIEEALKVLNDMVAGK---FCAPD---AVTFTTIIFGLLN  327 (512)
Q Consensus       263 -a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~---~~~~~~l~~~~~~  327 (512)
                       +..++.++...    .++|    +...|..-+..|.+..+.+.|.++..-+....   .+.|+   ..-|..+....++
T Consensus       331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq  410 (625)
T KOG4422|consen  331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ  410 (625)
T ss_pred             hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence             44444444432    1222    44556777888888899999988887766432   12232   2335566777788


Q ss_pred             cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC-CH----
Q 010342          328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-QL----  402 (512)
Q Consensus       328 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~----  402 (512)
                      ....+.-..+|+.+. -.-+-|+..+...++++....+.++-.-++|.++...|...+......++..+++.. +.    
T Consensus       411 ~es~~~~~~~Y~~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~  489 (625)
T KOG4422|consen  411 MESIDVTLKWYEDLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE  489 (625)
T ss_pred             HHHHHHHHHHHHHhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence            888888889888855 455677888888899999999999999999999988876655555555555555433 11    


Q ss_pred             ----------------HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHH---HH
Q 010342          403 ----------------DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYN---VV  462 (512)
Q Consensus       403 ----------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~---~l  462 (512)
                                      +....--.++.+.  .......+..+-.+.+.|..++|.+++..+.+.+ --|-....+   -+
T Consensus       490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El  567 (625)
T KOG4422|consen  490 REQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL  567 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence                            0011111222333  3445577888888999999999999999986543 233333444   56


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 010342          463 IDGACKLSMKREAYQILREMRKNGLN  488 (512)
Q Consensus       463 ~~~~~~~g~~~~a~~~~~~m~~~~~~  488 (512)
                      +....+.+.+..|...++-|...+.+
T Consensus       568 ~d~a~~~~spsqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  568 MDSAKVSNSPSQAIEVLQLASAFNLP  593 (625)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCch
Confidence            66777888999999999998776543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=1e-15  Score=129.34  Aligned_cols=444  Identities=14%  Similarity=0.132  Sum_probs=280.0

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH--hcCChhH-HHHHHHHHHhCC-------------------CC
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC--RTGEMDV-AYKVFDEMRHCG-------------------VL   61 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~-a~~~~~~m~~~~-------------------~~   61 (512)
                      ++.+|++.++--++++|.+.|.+.+...-..|...-+  .+.++.- -++.|-.|.+.|                   .+
T Consensus       125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P  204 (625)
T KOG4422|consen  125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP  204 (625)
T ss_pred             HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence            4567899999999999999988877776666555432  2222221 133333343322                   24


Q ss_pred             CChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchh
Q 010342           62 PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA  141 (512)
Q Consensus        62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  141 (512)
                      .+..++.++|.+.++-...++|.+++.+.-.     ........+||.+|.+-+-.-+    .+++.+|......||..+
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-----~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~T  275 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRA-----AKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFT  275 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-----hhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHh
Confidence            4677888999988888888888877655432     2567778888888876543322    677788888888899999


Q ss_pred             HHHHHHHHHhcCChhh----HHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhH-HHHHHHHHHh----CCCCC----c
Q 010342          142 CGHMIDSLCRSGRNHG----ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR-AYQLLEEGIQ----FGYLP----S  208 (512)
Q Consensus       142 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~  208 (512)
                      +|+++.+..+.|+++.    |.+++.+|++-|+.|+..+|..+|..+.+.++..+ +..++.++..    ..++|    |
T Consensus       276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d  355 (625)
T KOG4422|consen  276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD  355 (625)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence            9999999888887765    45677888888999999999998888888777644 4444444432    22222    4


Q ss_pred             hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC----CCC---cccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhh
Q 010342          209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKD----VDR---TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT  281 (512)
Q Consensus       209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  281 (512)
                      ...|...+..|.+..|.+-|.++..-+.....    .++   ..-|..+....|.....+....+|+.|.-.-+-|+..+
T Consensus       356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~  435 (625)
T KOG4422|consen  356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT  435 (625)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence            45677778888888888888888776654321    111   22455666777788888888888888887777788888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChh---hHHHHH
Q 010342          282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV---TYNAVL  358 (512)
Q Consensus       282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~  358 (512)
                      ...++++..-.|.++-..+++..+...+.      +++..+           -.+++.. +......|+..   -+....
T Consensus       436 m~~~lrA~~v~~~~e~ipRiw~D~~~~gh------t~r~~l-----------~eeil~~-L~~~k~hp~tp~r~Ql~~~~  497 (625)
T KOG4422|consen  436 MIHLLRALDVANRLEVIPRIWKDSKEYGH------TFRSDL-----------REEILML-LARDKLHPLTPEREQLQVAF  497 (625)
T ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHhhh------hhhHHH-----------HHHHHHH-HhcCCCCCCChHHHHHHHHH
Confidence            88888888888888888888888876442      111111           1111211 22222233222   222222


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCCCHHhHH---HHHHHHHhc
Q 010342          359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYA---AMIKGLCRS  434 (512)
Q Consensus       359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~  434 (512)
                      .-|+ ..-.+.....-.++.+..  ......+.+.-.+.+.|+.++|.+++.-+.+.+ -.|-....+   -+++.-...
T Consensus       498 ak~a-ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~  574 (625)
T KOG4422|consen  498 AKCA-ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS  574 (625)
T ss_pred             HHHH-HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence            2221 111222233334444443  344456666667788888888888888874332 223333444   555666677


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342          435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ  477 (512)
Q Consensus       435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  477 (512)
                      ++...|..+++-+...+...-...-+-+...|.-...-.+++.
T Consensus       575 ~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls  617 (625)
T KOG4422|consen  575 NSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS  617 (625)
T ss_pred             CCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence            7888888888888766533333244444555544333334443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=2.8e-14  Score=122.32  Aligned_cols=456  Identities=11%  Similarity=0.057  Sum_probs=322.1

Q ss_pred             ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhhHH
Q 010342            6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS-LTYSVLVRGVLRTRDVERAN   84 (512)
Q Consensus         6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~   84 (512)
                      .++++..|..+|++.+.-+.. +...|..-+..-.++.+...|..++++....  .|.+ ..|...+..--..|+...|.
T Consensus        85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR  161 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR  161 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence            356778889999988877543 6667888888888888999999999988774  4544 34666666667788888898


Q ss_pred             HHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHH
Q 010342           85 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV  164 (512)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (512)
                      +++.+..       ...|+...+.+.++.-.+-+.++.|..++++..--+  |++.+|--..+.-.++|....+..+|+.
T Consensus       162 qiferW~-------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~Vyer  232 (677)
T KOG1915|consen  162 QIFERWM-------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYER  232 (677)
T ss_pred             HHHHHHH-------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            8887765       578888889999998889999999999998876654  7788888888888888998888888887


Q ss_pred             HHHc-CC-CCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCc--hhhHHHHHHHHhccCCHHHHHHH--------H
Q 010342          165 MRKR-GL-TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS--EHTYKVLVEGLCGESDLEKARKV--------L  232 (512)
Q Consensus       165 ~~~~-g~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~  232 (512)
                      ..+. |- .-+...+.+...-=..+..++.|.-+|+-+++. ++.+  ...|......--+-||.....+.        +
T Consensus       233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY  311 (677)
T KOG1915|consen  233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY  311 (677)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence            7653 11 001223333333333466788888888877764 2222  34555555555556665554433        2


Q ss_pred             HHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhh-HHH-----H---HHHHHhcCCHHHHHHHHH
Q 010342          233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT-LNT-----V---INGFCKMGRIEEALKVLN  303 (512)
Q Consensus       233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~-----l---~~~~~~~~~~~~a~~~~~  303 (512)
                      +... ...+.+..+|..++..-...|+.+...++++..+..-++.+... |..     +   +-.-....+.+.+.++++
T Consensus       312 E~~v-~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq  390 (677)
T KOG1915|consen  312 EKEV-SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ  390 (677)
T ss_pred             HHHH-HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3333 24566777888888888888999999999988886643322211 111     1   111234578888999998


Q ss_pred             HHhhCCCCCCcHHHHHHHHHHH----hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342          304 DMVAGKFCAPDAVTFTTIIFGL----LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG  379 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  379 (512)
                      ...+.  ++-...||..+--.|    .++.+...|.+++..   .-|..|...+|...|..-.+.++++.+..+|++.++
T Consensus       391 ~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~---AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle  465 (677)
T KOG1915|consen  391 ACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN---AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE  465 (677)
T ss_pred             HHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH---HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            88763  255556666554444    467888889998877   446688888898888888899999999999999998


Q ss_pred             CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 010342          380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC  458 (512)
Q Consensus       380 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  458 (512)
                      .+ |-+-.+|......-...|+.+.|..+|.-++... .......|.+.|+--...|.++.|..+++++++.  .+...+
T Consensus       466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kv  542 (677)
T KOG1915|consen  466 FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKV  542 (677)
T ss_pred             cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchH
Confidence            76 5567788888888888899999999999887532 1223446777777777889999999999998876  344556


Q ss_pred             HHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 010342          459 YNVVIDGAC-----KLS-----------MKREAYQILREMR  483 (512)
Q Consensus       459 ~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~  483 (512)
                      |.....--.     +.|           ....|..+|++..
T Consensus       543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn  583 (677)
T KOG1915|consen  543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN  583 (677)
T ss_pred             HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence            655544333     233           4567888888764

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=3.6e-14  Score=121.73  Aligned_cols=447  Identities=11%  Similarity=0.086  Sum_probs=338.8

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHH
Q 010342           30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN  109 (512)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (512)
                      ..|-.-.+.-..++++..|.++|++.+... ..+...|...+.+-.+...+..|..++.+.+..+|...      ..+--
T Consensus        74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd------qlWyK  146 (677)
T KOG1915|consen   74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD------QLWYK  146 (677)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH------HHHHH
Confidence            334444444455677888999999998854 45777788888888999999999999999988877652      22223


Q ss_pred             HHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc
Q 010342          110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG  189 (512)
Q Consensus       110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~  189 (512)
                      .+-.--..|++..|.++|++..+  ..|+..+|.+.|..-.+.+.++.|..+++...-.  .|++.+|....+-=.+.|+
T Consensus       147 Y~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~  222 (677)
T KOG1915|consen  147 YIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN  222 (677)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence            44455567999999999999876  4599999999999999999999999999998864  6899999999988889999


Q ss_pred             hhHHHHHHHHHHhC-CC-CCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChhhHHH
Q 010342          190 CMRAYQLLEEGIQF-GY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR--TRICNIYLRALCLIKNPTELLN  265 (512)
Q Consensus       190 ~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~  265 (512)
                      ...+..+|+.+++. |- ..+...+.+....-.++..++.|.-+|+...+. .+.+  ...|..+...--+.|+.....+
T Consensus       223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd  301 (677)
T KOG1915|consen  223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIED  301 (677)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence            99999999988764 21 123445666666666788899999999998864 2222  3456666655556677665554


Q ss_pred             HH--------HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH--HHHHHHHHH--------Hhh
Q 010342          266 VL--------VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA--VTFTTIIFG--------LLN  327 (512)
Q Consensus       266 ~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~  327 (512)
                      ..        +.+.+.+ +.|-.+|-..++.-...|+.+...++|+.....-  +|-.  ..|...|..        -..
T Consensus       302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYalyeEle  378 (677)
T KOG1915|consen  302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYALYEELE  378 (677)
T ss_pred             HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            43        3344443 3477788888888888999999999999998754  3421  222222211        135


Q ss_pred             cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH----HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHH
Q 010342          328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG----LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD  403 (512)
Q Consensus       328 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  403 (512)
                      ..+.+.+.++++..+.  -++....||..+--.    -.+..++..|.+++....  |.-|...++...|..-.+.++++
T Consensus       379 ~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD  454 (677)
T KOG1915|consen  379 AEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD  454 (677)
T ss_pred             hhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence            7889999999988764  345556666554333    356789999999998776  56799999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREM  482 (512)
Q Consensus       404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  482 (512)
                      ....++++.++.+ +.|..+|......-...|+.+.|..+|.-.++.. +......|...|.--...|.+++|..+++++
T Consensus       455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl  533 (677)
T KOG1915|consen  455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL  533 (677)
T ss_pred             HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence            9999999999876 6788899999988889999999999999988753 2223456777777778899999999999999


Q ss_pred             HHCCCCCChHHHHHHH
Q 010342          483 RKNGLNPDAVTWRILD  498 (512)
Q Consensus       483 ~~~~~~p~~~~~~~l~  498 (512)
                      ++.  .+....|.++.
T Consensus       534 L~r--t~h~kvWisFA  547 (677)
T KOG1915|consen  534 LDR--TQHVKVWISFA  547 (677)
T ss_pred             HHh--cccchHHHhHH
Confidence            874  34444666654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.80  E-value=7.4e-14  Score=124.54  Aligned_cols=465  Identities=14%  Similarity=0.051  Sum_probs=380.4

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcC
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM----RHCGVLPNSLTYSVLVRGVLRTR   78 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~~   78 (512)
                      +|++..-++.|.++++..++. ++.+...|.+-...--.+|+.+...+++++-    ...|+..+...|..=...|-..|
T Consensus       415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag  493 (913)
T KOG0495|consen  415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG  493 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence            466777899999999999987 6668999998888888999999998888764    45688888888888888888888


Q ss_pred             ChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhH
Q 010342           79 DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA  158 (512)
Q Consensus        79 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  158 (512)
                      ..-....+...++....++.+   ...|+..-.+.|.+.+.++-|..+|....+-.+ .+...|......--..|..++-
T Consensus       494 sv~TcQAIi~avigigvEeed---~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl  569 (913)
T KOG0495|consen  494 SVITCQAIIRAVIGIGVEEED---RKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESL  569 (913)
T ss_pred             ChhhHHHHHHHHHhhccccch---hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHH
Confidence            888888877777655443322   245777888999999999999999988776544 4556777777777778999999


Q ss_pred             HHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010342          159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK  238 (512)
Q Consensus       159 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  238 (512)
                      ..+|++....- +-....|......+...|+...|..++..+.+.. +.+...|...+..-....+++.|..+|.+... 
T Consensus       570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~-  646 (913)
T KOG0495|consen  570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS-  646 (913)
T ss_pred             HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-
Confidence            99999998863 3355677777778888999999999999998865 45788999999999999999999999999864 


Q ss_pred             CCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHH
Q 010342          239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF  318 (512)
Q Consensus       239 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  318 (512)
                       ..+...+|...+...-..++.++|.+++++.++.-+. =...|..+.+.+.+.++++.|...|..-.+.  ++..+-.|
T Consensus       647 -~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLW  722 (913)
T KOG0495|consen  647 -ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLW  722 (913)
T ss_pred             -cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHH
Confidence             5566778888888888899999999999998877432 3457788888999999999999999876654  36677788


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 010342          319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE  398 (512)
Q Consensus       319 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  398 (512)
                      ..+...--+.|..-.|..++++.....  +-+...|...|+.-.+.|+.+.|..++.+.++. ++.+...|..-|....+
T Consensus       723 llLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~  799 (913)
T KOG0495|consen  723 LLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR  799 (913)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence            888888888999999999998865433  667888999999999999999999999888875 46677788888888877


Q ss_pred             cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010342          399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI  478 (512)
Q Consensus       399 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  478 (512)
                      .++-..+...+++.     ..|..+...+...+....++++|.+.|.+.++.+ +.+..+|..+...+.+.|.-+.-.++
T Consensus       800 ~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev  873 (913)
T KOG0495|consen  800 PQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEV  873 (913)
T ss_pred             cccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHH
Confidence            77766666666654     5677888889999999999999999999999876 33667899999999999998888999


Q ss_pred             HHHHHHCCCCCC
Q 010342          479 LREMRKNGLNPD  490 (512)
Q Consensus       479 ~~~m~~~~~~p~  490 (512)
                      +.+...  ..|.
T Consensus       874 ~~~c~~--~EP~  883 (913)
T KOG0495|consen  874 LKKCET--AEPT  883 (913)
T ss_pred             HHHHhc--cCCC
Confidence            998876  3454

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.78  E-value=2.1e-14  Score=132.76  Aligned_cols=434  Identities=13%  Similarity=0.090  Sum_probs=302.9

Q ss_pred             ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342            6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV   85 (512)
Q Consensus         6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   85 (512)
                      -.|++++|.+++.++++..+. +...|.+|...|-..|+.+++...+-..-... +.|...|..+.....+.|.+++|.-
T Consensus       151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence            349999999999999999655 78899999999999999999988776555432 3477889999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHH----HHHHHHhcCChhhHHHH
Q 010342           86 LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH----MIDSLCRSGRNHGASRV  161 (512)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~  161 (512)
                      .+.++++..|..      ...+-.-+..|-+.|+...|..-|.++....++.+..-+..    .++.+...++-+.|.+.
T Consensus       229 cy~rAI~~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  229 CYSRAIQANPSN------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHhcCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999988754433      22233356778899999999999999888766333332222    35566677777888888


Q ss_pred             HHHHHHc-CCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCC---------------------------CCCchhhHH
Q 010342          162 VYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG---------------------------YLPSEHTYK  213 (512)
Q Consensus       162 ~~~~~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~  213 (512)
                      ++..... +-..+...++.++..+.+...++.+......+....                           +.++... .
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~  381 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I  381 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence            8876652 233466788889999999999999988888776621                           1122222 1


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 010342          214 VLVEGLCGESDLEKARKVLQFMLSKKDV--DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK  291 (512)
Q Consensus       214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  291 (512)
                      -++-+..+....+....+...+......  .....+..+..++...|++.+|+.++..+......-+...|-.+..+|..
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~  461 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME  461 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence            2233344555555555566666655533  34568888899999999999999999999887666678889999999999


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc-------CCCCCChhhHHHHHHHHHcc
Q 010342          292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ-------RGYSPGIVTYNAVLRGLFRL  364 (512)
Q Consensus       292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~  364 (512)
                      .|.++.|.+.|+......  +.+......|...+.+.|+.++|.+.+..+...       .+..|+..........+.+.
T Consensus       462 l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~  539 (895)
T KOG2076|consen  462 LGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV  539 (895)
T ss_pred             HhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence            999999999999998776  566677778888899999999999998774311       12233333333334444555


Q ss_pred             CCHHHHHHHHHHHHhC---------------------------------------------------------------C
Q 010342          365 RRVEEAKEVFNCMLGI---------------------------------------------------------------G  381 (512)
Q Consensus       365 ~~~~~a~~~~~~~~~~---------------------------------------------------------------~  381 (512)
                      |+.++-..+-..|...                                                               |
T Consensus       540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~  619 (895)
T KOG2076|consen  540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG  619 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence            5544432222222100                                                               0


Q ss_pred             CCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          382 VVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       382 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +..+.  ..+.-++.++.+.+++++|..+...+.....  .++.   ..-...+.+.+..+++..|...++.|+..
T Consensus       620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~  695 (895)
T KOG2076|consen  620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ  695 (895)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            00011  2345567788899999999998888764332  1111   23345556677788888888888777654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=4.9e-15  Score=126.34  Aligned_cols=441  Identities=13%  Similarity=0.077  Sum_probs=217.8

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVV------SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR   76 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~   76 (512)
                      .+++..++.+|++.++-.+..  .|+..      ..+.+...+.+.|+++.|+..|+...+.  .|+..+-..|+-++..
T Consensus       246 i~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~  321 (840)
T KOG2003|consen  246 IHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA  321 (840)
T ss_pred             eeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence            467788899999999887776  33332      3455556678899999999999998776  5888776667777777


Q ss_pred             cCChhhHHHHHHHHHHHhhhcC---CCCcchHhHHHHHHHHHccCC-----------hhHHHHHHHhcCCCCCCCcchhH
Q 010342           77 TRDVERANVLMFKLWERMKEEE---DLSVNNAAFANLVDSLCREGY-----------VNEVFRIAEDMPQGKSVNEEFAC  142 (512)
Q Consensus        77 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~  142 (512)
                      .|+.++-.+.+.+++..-....   -+.+....-..|+.--.+...           -++++-.--++...-+.|+-.. 
T Consensus       322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-  400 (840)
T KOG2003|consen  322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-  400 (840)
T ss_pred             cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-
Confidence            8888888877777765211100   011111111122222222211           1111111111111111111100 


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHH--HHHHHHh
Q 010342          143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK--VLVEGLC  220 (512)
Q Consensus       143 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~  220 (512)
                                | .+-.++.++.-....+..+..  ..-.--+.++|+++.|.+++.-..+..-+.-...-+  .++....
T Consensus       401 ----------g-~dwcle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq  467 (840)
T KOG2003|consen  401 ----------G-CDWCLESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ  467 (840)
T ss_pred             ----------c-cHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh
Confidence                      0 000011111000000000000  001122445566666665555544332111111111  1222222


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342          221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK  300 (512)
Q Consensus       221 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  300 (512)
                      .-.++..|..+-+.....+ .-+......-.......|++++|...+++.+...-.-....|| +.-.+...|+.++|++
T Consensus       468 ggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald  545 (840)
T KOG2003|consen  468 GGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALD  545 (840)
T ss_pred             cccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHH
Confidence            2334555555544443221 1111111111222334566666666666555432211111222 1223455566666666


Q ss_pred             HHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342          301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI  380 (512)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  380 (512)
                      .|-++...-  ..+......+...|-...+...|++++.+.  ..-++.|+...+.|...|-+.|+-..|.+.+-+--+.
T Consensus       546 ~f~klh~il--~nn~evl~qianiye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyry  621 (840)
T KOG2003|consen  546 CFLKLHAIL--LNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY  621 (840)
T ss_pred             HHHHHHHHH--HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence            666554322  345555566666666666666666666442  2223445666666666666666666666655443332


Q ss_pred             CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChhhH
Q 010342          381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC-RSGKIHEAVHFLYELVDSGVTPNIVCY  459 (512)
Q Consensus       381 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~  459 (512)
                       ++.+..+...|...|....-+++++.+|++..-  +.|+..-|..++..|. +.|++.+|.++++...+. ++-|..++
T Consensus       622 -fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldcl  697 (840)
T KOG2003|consen  622 -FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCL  697 (840)
T ss_pred             -cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHH
Confidence             355666666666666666666667766666532  4566666666654443 456677777666666544 34466666


Q ss_pred             HHHHHHHHhcCC
Q 010342          460 NVVIDGACKLSM  471 (512)
Q Consensus       460 ~~l~~~~~~~g~  471 (512)
                      ..|++.+...|.
T Consensus       698 kflvri~~dlgl  709 (840)
T KOG2003|consen  698 KFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHhccccc
Confidence            666666665553

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.72  E-value=1.6e-13  Score=127.06  Aligned_cols=352  Identities=13%  Similarity=0.119  Sum_probs=241.0

Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHH
Q 010342          149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA  228 (512)
Q Consensus       149 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  228 (512)
                      ....|+.++|.+++.+.++..+. +...|-+|...|-..|+.+++...+-.+.... +.|...|..+.......|+++.|
T Consensus       149 lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence            33448888888888887776433 66778888888888888888877765554433 44667777777777788888888


Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHH
Q 010342          229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN----TVINGFCKMGRIEEALKVLND  304 (512)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~  304 (512)
                      .-.|.+..+. .+++...+..-...|-+.|+...|...+.++....++.|..-+.    .+++.+...++-+.|++.++.
T Consensus       227 ~~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  227 RYCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8888887754 34445555556677777888888888888877765533333222    334556666777888888877


Q ss_pred             HhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc--------------------------cCCCCCChhhHHHHH
Q 010342          305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP--------------------------QRGYSPGIVTYNAVL  358 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~l~  358 (512)
                      .........+...++.++..+.+...++.|...+.+...                          ..+..++...+ -++
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~  384 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM  384 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence            776443345566677777777877778877776655332                          01112222221 223


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342          359 RGLFRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK  436 (512)
Q Consensus       359 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  436 (512)
                      -++.+....+....+..-+....+  ..+...|.-+.++|...|++.+|..++..+.......+...|-.+.++|...|.
T Consensus       385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e  464 (895)
T KOG2076|consen  385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE  464 (895)
T ss_pred             hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence            344555555666666666666553  334567888999999999999999999999876656677899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCChHHHHHHHHhhccCC
Q 010342          437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR--------KNGLNPDAVTWRILDKLHGNRG  505 (512)
Q Consensus       437 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g  505 (512)
                      +++|.+.+.+.+... +.+...-..|...+.+.|+.++|.+.+..+.        ..+..|+..........+...|
T Consensus       465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g  540 (895)
T KOG2076|consen  465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG  540 (895)
T ss_pred             HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence            999999999998864 2355666778888899999999999998853        2234444444444445554444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.71  E-value=4.3e-17  Score=141.97  Aligned_cols=261  Identities=17%  Similarity=0.142  Sum_probs=94.5

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 010342          215 LVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG  293 (512)
Q Consensus       215 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  293 (512)
                      +...+...|++++|.++++...... .+.+...+..+.......++++.|...++.+...+.. ++..+..++.. ...+
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence            3455555566666666664433222 2333444444555555556666666666666554433 44555566655 5677


Q ss_pred             CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010342          294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV  373 (512)
Q Consensus       294 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  373 (512)
                      ++++|.++++..-+.   .++...+..++..+...++++++.+++.+.......+++...|..+...+.+.|+.++|...
T Consensus        92 ~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   92 DPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            777777777665543   34555566677777777777777777777554444455666777777777778888888888


Q ss_pred             HHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 010342          374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT  453 (512)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  453 (512)
                      +++..+.. |.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+.. +
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p  245 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P  245 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence            88877753 4456677777777777787777777777666543 4455567777778888888888888888777753 3


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          454 PNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       454 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      .|+.....+..++...|+.++|.++.++..
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             T-HHHHHHHHHHHT----------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            367777777788888888888877776654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.70  E-value=2.6e-13  Score=123.67  Aligned_cols=285  Identities=12%  Similarity=0.083  Sum_probs=183.7

Q ss_pred             cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHH--HHHHHHHccCChhhHH
Q 010342          187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN--IYLRALCLIKNPTELL  264 (512)
Q Consensus       187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~  264 (512)
                      .|+++.|.+.+....+..-.| ...|..........|+++.|...+.++.+.  .|+.....  .....+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            466666665555443321111 122222333335666666666666666532  22222111  2245556666666666


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH------HHHHHHHHHHhhcCCHHHHHHHH
Q 010342          265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA------VTFTTIIFGLLNVGRIQEALNLL  338 (512)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~  338 (512)
                      ..++.+.+..+. ++.....+...|.+.|++++|.+++..+.+.....+..      .+|..++.......+.+...+.+
T Consensus       174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            666666666533 56677778888888888888888888888766432221      12233333334444555555655


Q ss_pred             HhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 010342          339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI  418 (512)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  418 (512)
                      .+.-.  ..+.++.....+...+...|+.++|..++++..+.  +++....  ++.+....++.+++.+..+...+.. +
T Consensus       253 ~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P  325 (398)
T PRK10747        253 KNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G  325 (398)
T ss_pred             HhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence            55322  22456777778888888899999999988888773  4555322  2333345588888888888887664 5


Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       419 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .|...+..+...|.+.+++++|.+.|++..+.  .|+...+..+...+.+.|+.++|.+++++-..
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66677888888899999999999999888875  67888888888888899999999888887653

>TIGR00540 hemY_coli hemY protein

Probab=99.69  E-value=1.7e-13  Score=125.62  Aligned_cols=288  Identities=13%  Similarity=0.063  Sum_probs=185.0

Q ss_pred             ccCchhHHHHHHHHHHhCCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHccCChhh
Q 010342          186 KHGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR--ICNIYLRALCLIKNPTE  262 (512)
Q Consensus       186 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~  262 (512)
                      ..|+++.|.+.+.+..+.  .|+ ...+..........|+.+.|.+.+....+..  |+..  .-......+...|+++.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence            466777777777665543  233 2233344555666677777777777765422  2222  22334666666777777


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHH----HHHHHHhhcCCHHHHHHHH
Q 010342          263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT----TIIFGLLNVGRIQEALNLL  338 (512)
Q Consensus       263 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~  338 (512)
                      |...++.+.+..+. +...+..+...+.+.|+++.|.+.+..+.+.+.  .+...+.    .........+..+++.+.+
T Consensus       172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            77777777766533 556777888888888888888888888887653  2222221    1111112222222223333


Q ss_pred             HhhcccC--CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHh---HHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          339 YQVMPQR--GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT---YAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       339 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      .+.....  ..+.++..+..+...+...|+.++|.+++++..+..  |+...   ...........++.+.+.+.++...
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            3332221  112367788888888999999999999999988853  33321   1111122234577888888888877


Q ss_pred             cCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          414 WPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       414 ~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      +.. +.|.  ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus       327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            653 4455  66778899999999999999999954444447888888899999999999999999998864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.69  E-value=2.2e-16  Score=137.54  Aligned_cols=225  Identities=14%  Similarity=0.150  Sum_probs=83.9

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 010342          216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI  295 (512)
Q Consensus       216 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (512)
                      .......++++.|.+.++++...+.. ++..+..++.. ...+++++|..++....+.  .+++..+...+..+.+.+++
T Consensus        51 a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~  126 (280)
T PF13429_consen   51 ADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDY  126 (280)
T ss_dssp             -----------------------------------------------------------------------H-HHHTT-H
T ss_pred             cccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHH
Confidence            33333444444444444444432111 22233333333 3444444444444433332  13444555566666666777


Q ss_pred             HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 010342          296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN  375 (512)
Q Consensus       296 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  375 (512)
                      +++..+++.+......+.+...|..+...+.+.|+.++|++.+++.++..  +.|......++..+...|+.+++..+++
T Consensus       127 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~  204 (280)
T PF13429_consen  127 DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALK  204 (280)
T ss_dssp             HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            77777766665443334555666666666667777777777776665443  3345556666666666677766666666


Q ss_pred             HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      ...+.. +.++..+..+..+|...|+.++|...+++..+.. +.|......+..++...|+.++|.++.++..
T Consensus       205 ~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  205 RLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred             HHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            665543 4455556666667777777777777777766543 4566666667777777777777776665543

>TIGR00540 hemY_coli hemY protein

Probab=99.68  E-value=1.2e-13  Score=126.57  Aligned_cols=290  Identities=8%  Similarity=-0.016  Sum_probs=149.0

Q ss_pred             ccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcc--hHHHHHHHHhccCchhHH
Q 010342          116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV--SYNSIVHGLCKHGGCMRA  193 (512)
Q Consensus       116 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~~~~~~a  193 (512)
                      ..|+++.|.+.+....+..+.| ...+-....+....|+++.|.+.+....+..  |+..  ........+...|+++.|
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence            3455666665555544432211 1122223344445555555555555554432  2221  222234445555555555


Q ss_pred             HHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc
Q 010342          194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  273 (512)
                      .+.++.+.+.. +-++..+..+...+...|+++.+.+.+..+.+.+                                  
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~----------------------------------  217 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG----------------------------------  217 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC----------------------------------
Confidence            55555555543 3344455555555555555555555555555433                                  


Q ss_pred             CCCCChhhHH-HHHHH---HHhcCCHHHHHHHHHHHhhCCC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCC
Q 010342          274 QCQPDVITLN-TVING---FCKMGRIEEALKVLNDMVAGKF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY  347 (512)
Q Consensus       274 ~~~~~~~~~~-~l~~~---~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  347 (512)
                       .. +...+. .-..+   ....+..+...+.+..+.....  .+.+...+..+...+...|+.++|.+.+.+.++..  
T Consensus       218 -~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--  293 (409)
T TIGR00540       218 -LF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--  293 (409)
T ss_pred             -CC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--
Confidence             22 111111 00011   1111222222223322222110  02366666677777777777777777777765433  


Q ss_pred             CCChhh---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 010342          348 SPGIVT---YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY  422 (512)
Q Consensus       348 ~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  422 (512)
                       |+...   ...........++.+.+.+.++...+.. +.|+  ....++...+.+.|++++|.+.|+........|+..
T Consensus       294 -pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~  371 (409)
T TIGR00540       294 -GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN  371 (409)
T ss_pred             -CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence             22221   1111122233466677777777766642 4444  556677777778888888888887533333467777


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      .+..+...+.+.|+.++|.+++++...
T Consensus       372 ~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       372 DLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777777888888888888888777543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.67  E-value=4.7e-13  Score=121.98  Aligned_cols=252  Identities=13%  Similarity=0.068  Sum_probs=160.6

Q ss_pred             hccCchhHHHHHHHHHHhCCCCCchhhHH--HHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhh
Q 010342          185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYK--VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE  262 (512)
Q Consensus       185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  262 (512)
                      .+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|...++.+.+. .+.++.....+...|.+.|++++
T Consensus       129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-APRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhHHH
Confidence            4445555555555554432  22222111  2233444455555555555555432 23334444445555555555555


Q ss_pred             HHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 010342          263 LLNVLVFMLQTQCQPDV-------ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL  335 (512)
Q Consensus       263 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  335 (512)
                      +..++..+.+....++.       ..|..++.......+.+...++++.+.+..  +.++.....+...+...|+.++|.
T Consensus       206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHHH
Confidence            55555555544332111       123333443444456667777777765543  567778888889999999999999


Q ss_pred             HHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342          336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP  415 (512)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  415 (512)
                      +.+.+.++ .  +|++...  ++.+....++.+++.+..+...+.. +.|+..+..+...+.+.+++++|.+.|+...+.
T Consensus       284 ~~L~~~l~-~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~  357 (398)
T PRK10747        284 QIILDGLK-R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ  357 (398)
T ss_pred             HHHHHHHh-c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99988664 2  5555322  3334445688999999999888764 566777888899999999999999999999764


Q ss_pred             CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       416 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                        .|+...+..+...+.+.|+.++|.+++++...
T Consensus       358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              68888888899999999999999999987754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.66  E-value=3.5e-13  Score=110.10  Aligned_cols=235  Identities=18%  Similarity=0.131  Sum_probs=145.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc--hHhHH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN--NAAFA  108 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~  108 (512)
                      .|-.-+..+ -++++++|.++|-+|.+.. +-+..+...|.+.|.+.|..++|+.+++.+.++    ++....  .....
T Consensus        38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~  111 (389)
T COG2956          38 DYVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQ  111 (389)
T ss_pred             HHHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHHHHH
Confidence            344444433 3568899999999998742 334556677888899999999999988877642    222222  22445


Q ss_pred             HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcc----hHHHHHHHH
Q 010342          109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV----SYNSIVHGL  184 (512)
Q Consensus       109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~----~~~~l~~~~  184 (512)
                      .|.+-|...|-+|.|..+|..+.+.+. .-..+...|+..|-...+|++|.++-+++.+.|..+...    .|.-+...+
T Consensus       112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~  190 (389)
T COG2956         112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA  190 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence            566777778888888888887776443 334456667777777777877777777777665443322    345555555


Q ss_pred             hccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHH
Q 010342          185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL  264 (512)
Q Consensus       185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  264 (512)
                      ....+.+.|..++.+..+.+ +..+..-..+.+.....|+++.|.+.++.+.+.+..--+.+...+..+|...|++++..
T Consensus       191 ~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         191 LASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             hhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            55666777777777666544 33444444555666666777777777766665543333334444444444444444444


Q ss_pred             HHHHHHHhc
Q 010342          265 NVLVFMLQT  273 (512)
Q Consensus       265 ~~~~~~~~~  273 (512)
                      ..+..+.+.
T Consensus       270 ~fL~~~~~~  278 (389)
T COG2956         270 NFLRRAMET  278 (389)
T ss_pred             HHHHHHHHc
Confidence            444444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=3.5e-11  Score=103.51  Aligned_cols=311  Identities=13%  Similarity=0.064  Sum_probs=230.0

Q ss_pred             HHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHc
Q 010342          180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR---TRICNIYLRALCL  256 (512)
Q Consensus       180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~  256 (512)
                      +..++....+.+++.+-.+.....|++.+...-+....+.....|+++|+.+|+.+... .+-.   ..+|..++-.-  
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~LYv~--  309 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVLYVK--  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHHHHH--
Confidence            34455566678888888888888887777666666666777888999999999999865 3322   33444443322  


Q ss_pred             cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 010342          257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN  336 (512)
Q Consensus       257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  336 (512)
                      ..+.  .+..+..-.-.--+--+.|+-.+.+-|.-.++.++|...|++..+.+  +.....|+.+..-|....+...|.+
T Consensus       310 ~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~  385 (559)
T KOG1155|consen  310 NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIE  385 (559)
T ss_pred             hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHH
Confidence            2111  11222111111112234567778888888899999999999999877  6778889999999999999999999


Q ss_pred             HHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342          337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS  416 (512)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  416 (512)
                      -++..+.-.  +.|-..|-.|.++|.-.+...=|+-.|++..+.. |.|...|.+|..+|.+.++.++|++.|.+....+
T Consensus       386 sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  386 SYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            998876544  6678889999999999999999999999998864 6688899999999999999999999999998776


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010342          417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----G-VTP-NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD  490 (512)
Q Consensus       417 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~  490 (512)
                       ..+...+..|...|-+.++.++|...|.+.++.    | +.| .......|..-+.+.+++++|..+...... | .+.
T Consensus       463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e  539 (559)
T KOG1155|consen  463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETE  539 (559)
T ss_pred             -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-Cch
Confidence             446678999999999999999999999887752    3 222 222333466777889999999887777665 2 566


Q ss_pred             hHHHHHHHHhhcc
Q 010342          491 AVTWRILDKLHGN  503 (512)
Q Consensus       491 ~~~~~~l~~~~~~  503 (512)
                      ..--+.|++-..+
T Consensus       540 ~eeak~LlReir~  552 (559)
T KOG1155|consen  540 CEEAKALLREIRK  552 (559)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.1e-12  Score=113.19  Aligned_cols=405  Identities=10%  Similarity=0.043  Sum_probs=222.8

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPN-VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS-LTYSVLVRGVLRTRDV   80 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~   80 (512)
                      -|.++|++++|++.+...++.  .|+ +.-|.....+|...|+++++.+--.+..+.  .|+- ..+..-.+++-..|+.
T Consensus       124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~  199 (606)
T KOG0547|consen  124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKF  199 (606)
T ss_pred             hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccH
Confidence            467888899999999888886  666 677888888888888888888877777764  3543 2455555667777777


Q ss_pred             hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHH--------Hh-cCCCC--CCCcchhHHHHHHHH
Q 010342           81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA--------ED-MPQGK--SVNEEFACGHMIDSL  149 (512)
Q Consensus        81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--------~~-~~~~~--~~~~~~~~~~l~~~~  149 (512)
                      +++..-..-                  ..+...+....-.--+.+++        ++ +.+.+  ..|+....++....+
T Consensus       200 ~eal~D~tv------------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF  261 (606)
T KOG0547|consen  200 DEALFDVTV------------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF  261 (606)
T ss_pred             HHHHHhhhH------------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence            776431110                  01111111111111111111        11 22111  123332222222221


Q ss_pred             HhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc-----cCchhHHHHHHHHHHhC---CCCCc---------hhhH
Q 010342          150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK-----HGGCMRAYQLLEEGIQF---GYLPS---------EHTY  212 (512)
Q Consensus       150 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~---~~~~~---------~~~~  212 (512)
                      -..            .......+.......+..++..     ...+..+.+.+.+-...   ....+         ..+.
T Consensus       262 ~~~------------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al  329 (606)
T KOG0547|consen  262 HAD------------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL  329 (606)
T ss_pred             ccc------------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence            100            0000000011111111111110     11233333333321110   00011         1122


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 010342          213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM  292 (512)
Q Consensus       213 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  292 (512)
                      ......+.-.|+.-.|..-|+...... +.....|-.+...|...++.++....|....+.++. ++.+|..-.+.+.-.
T Consensus       330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL  407 (606)
T KOG0547|consen  330 LLRGTFHFLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLL  407 (606)
T ss_pred             HHhhhhhhhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHH
Confidence            222233345677777777777776542 223333666667777777777777777777776644 566666666666667


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010342          293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE  372 (512)
Q Consensus       293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  372 (512)
                      +++++|..-|++.....  +.+...|..+..+..+.+++++++..|++..+.  ++..+..|+.....+...+++++|.+
T Consensus       408 ~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k  483 (606)
T KOG0547|consen  408 QQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVK  483 (606)
T ss_pred             HHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence            77777877777777655  556666666666667777777777777776433  35556677777777777778888888


Q ss_pred             HHHHHHhCCCC-------CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          373 VFNCMLGIGVV-------ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY  445 (512)
Q Consensus       373 ~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  445 (512)
                      .|+...+....       +.+.+.-.++-.- -.+++..|..++++.++.+ +.....+..|...-.++|+.++|+++|+
T Consensus       484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFE  561 (606)
T KOG0547|consen  484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFE  561 (606)
T ss_pred             HHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            77777663211       1111122222111 2367777777777777655 3344567777777777777777777777


Q ss_pred             HHHH
Q 010342          446 ELVD  449 (512)
Q Consensus       446 ~~~~  449 (512)
                      +...
T Consensus       562 ksa~  565 (606)
T KOG0547|consen  562 KSAQ  565 (606)
T ss_pred             HHHH
Confidence            6543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=2e-11  Score=104.97  Aligned_cols=386  Identities=13%  Similarity=0.059  Sum_probs=265.2

Q ss_pred             CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCc
Q 010342           59 GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE  138 (512)
Q Consensus        59 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  138 (512)
                      +...|...+-...-.+.+.|..+.|...+..++...      +..-..|..|....   .+.+.+..+.......    +
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~------P~~W~AWleL~~li---t~~e~~~~l~~~l~~~----~  225 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY------PWFWSAWLELSELI---TDIEILSILVVGLPSD----M  225 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC------CcchHHHHHHHHhh---chHHHHHHHHhcCccc----c
Confidence            334455554444555566777777777666655422      22223333333222   2222222222222110    1


Q ss_pred             chhH-HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCC--CCchhhHHHH
Q 010342          139 EFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--LPSEHTYKVL  215 (512)
Q Consensus       139 ~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l  215 (512)
                      .... -.+..++......+++.+-.+.....|..-+...-+....+.-...++++|+.+|+++.+...  .-|..+|+.+
T Consensus       226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~  305 (559)
T KOG1155|consen  226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV  305 (559)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence            1111 123455666667888888888888887764544444455556678899999999999998631  1266788887


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 010342          216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI  295 (512)
Q Consensus       216 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (512)
                      +..-..    .....++.+-...-..-.+.++-.+..-|.-.++.++|...|+..++.++. ....|+.+.+-|....+.
T Consensus       306 LYv~~~----~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt  380 (559)
T KOG1155|consen  306 LYVKND----KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNT  380 (559)
T ss_pred             HHHHhh----hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhccc
Confidence            755322    122333333333334445667788888899999999999999999988755 677899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 010342          296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN  375 (512)
Q Consensus       296 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  375 (512)
                      ..|++-++...+..  +.|-..|-.+.++|.-.+.+.=|+-.|++...-.  +.|+..|.+|..+|.+.++.++|++-|.
T Consensus       381 ~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCyk  456 (559)
T KOG1155|consen  381 HAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYK  456 (559)
T ss_pred             HHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999876  7899999999999999999999999999865443  6688999999999999999999999999


Q ss_pred             HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC----C-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----S-NIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      .....| ..+...+..|...|-+.++..+|...+++.++.    | ..| .....--|..-+.+.+++++|.........
T Consensus       457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            999876 446788999999999999999999999887642    2 122 222233355566677888877765544433


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       450 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      .                  .-..++|..++++..+.
T Consensus       536 ~------------------~~e~eeak~LlReir~~  553 (559)
T KOG1155|consen  536 G------------------ETECEEAKALLREIRKI  553 (559)
T ss_pred             C------------------CchHHHHHHHHHHHHHh
Confidence            2                  22346677777776643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=9.8e-13  Score=113.53  Aligned_cols=412  Identities=13%  Similarity=0.064  Sum_probs=259.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc-hHhHH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN-SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFA  108 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~  108 (512)
                      .+.....-|.++|++++|++.+.+..+.  .|| +..|.....+|...|+++++.+...+.++       +.|+ ...+.
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE-------l~P~Y~KAl~  187 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE-------LNPDYVKALL  187 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh-------cCcHHHHHHH
Confidence            3556677788999999999999999986  688 78888999999999999998877666553       3333 22344


Q ss_pred             HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH---------HHHHcC--CCCCcchH
Q 010342          109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY---------VMRKRG--LTPSLVSY  177 (512)
Q Consensus       109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------~~~~~g--~~p~~~~~  177 (512)
                      .-.+++-..|++++|+.=.             +-..+...+....-.--+.+++.         .+.+.+  +-|+....
T Consensus       188 RRA~A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi  254 (606)
T KOG0547|consen  188 RRASAHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFI  254 (606)
T ss_pred             HHHHHHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence            4456666778887765321             11111111111111111222222         122111  22343333


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh--ccC---CHHHHHHHHHHHHhC------CCCCCc--
Q 010342          178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC--GES---DLEKARKVLQFMLSK------KDVDRT--  244 (512)
Q Consensus       178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~------~~~~~~--  244 (512)
                      .+....+...-.            .....+.......+..++.  ..+   .+..|...+.+-...      ....+.  
T Consensus       255 ~syf~sF~~~~~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l  322 (606)
T KOG0547|consen  255 ASYFGSFHADPK------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL  322 (606)
T ss_pred             HHHHhhcccccc------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH
Confidence            333333221000            0000000011111111110  001   122232222221110      000011  


Q ss_pred             ----ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHH
Q 010342          245 ----RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT  320 (512)
Q Consensus       245 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  320 (512)
                          .........+.-.|+.-.+..-|+..+.....++. .|-.+..+|....+.++.+..|......+  +.++.+|..
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyH  399 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYH  399 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHh
Confidence                11222223344578888999999999888665433 37777788999999999999999999887  677778888


Q ss_pred             HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010342          321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN  400 (512)
Q Consensus       321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  400 (512)
                      -.+...-.+++++|..-|++...-.  +-+...|-.+.-+..+.+.+++++..|++..+. +|..++.|+.....+...+
T Consensus       400 RgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqq  476 (606)
T KOG0547|consen  400 RGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQ  476 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHH
Confidence            8888888999999999998865322  223444555555566888999999999999885 5778889999999999999


Q ss_pred             CHHHHHHHHHHhhcCCCC-----CCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010342          401 QLDEAKRFWDDIVWPSNI-----HDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR  473 (512)
Q Consensus       401 ~~~~a~~~~~~~~~~~~~-----~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  473 (512)
                      ++++|.+.|+..++....     .+.  .+--+++..- -.+++..|..++.+.++.+++ ....|..|...-.+.|+.+
T Consensus       477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~  554 (606)
T KOG0547|consen  477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKID  554 (606)
T ss_pred             hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHH
Confidence            999999999998764321     111  1222222222 238999999999999987643 5668999999999999999


Q ss_pred             HHHHHHHHHHH
Q 010342          474 EAYQILREMRK  484 (512)
Q Consensus       474 ~a~~~~~~m~~  484 (512)
                      +|+++|++...
T Consensus       555 eAielFEksa~  565 (606)
T KOG0547|consen  555 EAIELFEKSAQ  565 (606)
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.64  E-value=3.7e-12  Score=107.46  Aligned_cols=288  Identities=14%  Similarity=0.076  Sum_probs=187.0

Q ss_pred             cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 010342          187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV  266 (512)
Q Consensus       187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  266 (512)
                      .|++.+|+++..+..+.+ ......|..-.++.-..||.+.+-.++.++.+....+.....-...+.....|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            466666666666555444 2223344445555556666666666666665443344444444555555666666666666


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc------HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010342          267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD------AVTFTTIIFGLLNVGRIQEALNLLYQ  340 (512)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~  340 (512)
                      +..+.+.++. ++.......++|.+.|++.....++..+.+.+...+.      ..+|..+++-....+..+.-...+++
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            6666665544 5566677777788888888888888887776643221      23556666666666666655555655


Q ss_pred             hcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 010342          341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD  420 (512)
Q Consensus       341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  420 (512)
                      .  ....+.++..-.+++.-+.++|+.++|.++..+..+.+..|+   ...+ -.+.+-++.+.-.+..+...+.. +.+
T Consensus       255 ~--pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~  327 (400)
T COG3071         255 Q--PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PED  327 (400)
T ss_pred             c--cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence            3  223345566667777788888888888888888887765555   2222 23455666666666666655443 445


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       421 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      +..+.+|...|.+.+.+.+|...|+...+.  .|+..+|+.+..++.+.|++.+|.+..++....
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            577888888888888888888888877665  678888888888888888888888888876643

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=1.6e-11  Score=101.93  Aligned_cols=455  Identities=11%  Similarity=0.063  Sum_probs=216.5

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA   83 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a   83 (512)
                      |+...++..|+.+++--...+-.....+-.-+...+...|++++|+..+..+.... .|+...+..+..+..-.|.+.+|
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence            44556677777777665544332222333445556667778888877777776643 45555666666566666777777


Q ss_pred             HHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH
Q 010342           84 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY  163 (512)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (512)
                      .++..+.          .-++-.-..+...-.+.++-++.....+.+.+.-     .---+|.......-.+.+|.+++.
T Consensus       111 ~~~~~ka----------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYk  175 (557)
T KOG3785|consen  111 KSIAEKA----------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYK  175 (557)
T ss_pred             HHHHhhC----------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHH
Confidence            6544322          1111122223344445566555555554444321     112223344444445666677766


Q ss_pred             HHHHcCCCCCcchHHHH-HHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 010342          164 VMRKRGLTPSLVSYNSI-VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD  242 (512)
Q Consensus       164 ~~~~~g~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  242 (512)
                      .....  .|+....|.- .-+|.+..-++-+.+++.--.+. ++.+....+.......+.=+-..|+.-.+.+.+.....
T Consensus       176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~  252 (557)
T KOG3785|consen  176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE  252 (557)
T ss_pred             HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence            66654  2333333332 23344555555555555554442 12233333333333322222222333333332221111


Q ss_pred             CcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Q 010342          243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII  322 (512)
Q Consensus       243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  322 (512)
                      -+..-..+-.-+.-..+-+.|++++-.+.+.  -|.  .-..++--|.+.+++.+|..+.+++.     +.++.-|..-.
T Consensus       253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~-----PttP~EyilKg  323 (557)
T KOG3785|consen  253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLD-----PTTPYEYILKG  323 (557)
T ss_pred             chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcC-----CCChHHHHHHH
Confidence            0000000001111123334555554444332  111  22234445677777777777776664     22222222111


Q ss_pred             HHHh-------hcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 010342          323 FGLL-------NVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID  394 (512)
Q Consensus       323 ~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  394 (512)
                      -..+       ......-|.+.| ++.-..+..-| ..--.++..++.-..++++++..++.+...-...|...+| +..
T Consensus       324 vv~aalGQe~gSreHlKiAqqff-qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQ  401 (557)
T KOG3785|consen  324 VVFAALGQETGSREHLKIAQQFF-QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQ  401 (557)
T ss_pred             HHHHHhhhhcCcHHHHHHHHHHH-HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHH
Confidence            1122       222344444444 32333333322 2223344455555566777777777666643333333333 556


Q ss_pred             HHHhcCCHHHHHHHHHHhhcCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCH
Q 010342          395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVY-AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC-YNVVIDGACKLSMK  472 (512)
Q Consensus       395 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~  472 (512)
                      +++..|++.+|+++|-.+....++ |..+| ..|.++|.+.+.++.|++++-++-   .+.+..+ ...+..-|.+.+.+
T Consensus       402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eF  477 (557)
T KOG3785|consen  402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEF  477 (557)
T ss_pred             HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHH
Confidence            677777777777777766544433 33344 445567777777777766654432   1212222 33344566667766


Q ss_pred             HHHHHHHHHHHHCCCCCChHHH
Q 010342          473 REAYQILREMRKNGLNPDAVTW  494 (512)
Q Consensus       473 ~~a~~~~~~m~~~~~~p~~~~~  494 (512)
                      --|.+.|..+..  +.|++..|
T Consensus       478 yyaaKAFd~lE~--lDP~pEnW  497 (557)
T KOG3785|consen  478 YYAAKAFDELEI--LDPTPENW  497 (557)
T ss_pred             HHHHHhhhHHHc--cCCCcccc
Confidence            666666666654  34444443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.63  E-value=2.7e-12  Score=104.99  Aligned_cols=289  Identities=13%  Similarity=0.062  Sum_probs=188.9

Q ss_pred             CchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHccCChhhHH
Q 010342          188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT---RICNIYLRALCLIKNPTELL  264 (512)
Q Consensus       188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~  264 (512)
                      ++.++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+++.+.+.++...+..   .....+.+-|...|-++.|+
T Consensus        49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            45556666666665532 233444455556666666666666666666543322221   13344455566666666666


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342          265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQV  341 (512)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~  341 (512)
                      .+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+.-+.+   ..-|..+...+....+.+.|..++.+.
T Consensus       128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            66666665432 23456677888888889999999888888766532222   233556666677788888899988887


Q ss_pred             cccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 010342          342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN  421 (512)
Q Consensus       342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  421 (512)
                      ++..  +..+..--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|...|+.++....+.++.+..  +..
T Consensus       207 lqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~  282 (389)
T COG2956         207 LQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA  282 (389)
T ss_pred             HhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence            7554  233333344667788899999999999999887655556678888899999999999999998887654  333


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 010342          422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK---LSMKREAYQILREMRK  484 (512)
Q Consensus       422 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~  484 (512)
                      ..-..+.+.-....-.+.|...+.+-+..  +|+...+..++..-..   .|.+.+....++.|..
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            44455555555555667777776665554  7888888888877654   3456666777777764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=5.2e-11  Score=105.07  Aligned_cols=285  Identities=12%  Similarity=0.055  Sum_probs=226.3

Q ss_pred             CCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 010342          206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV  285 (512)
Q Consensus       206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  285 (512)
                      .-+......-.+-+...+++.+..++.+.+.+. .+.....+..-+.++...|+..+..-+=..+.+..+. .+.+|-++
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV  318 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV  318 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence            345555666667778889999999999999864 5566667777777899999998888888888877544 77899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC
Q 010342          286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR  365 (512)
Q Consensus       286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  365 (512)
                      .--|...|+..+|.+.|.+....+  +.-...|-.+...++-.+..++|+..+...-+-.  +-...-+.-+.--|.+.+
T Consensus       319 g~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~  394 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTN  394 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhc
Confidence            999999999999999999988765  4556788899999999999999999887753222  212222223445678899


Q ss_pred             CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC------CCCCCHHhHHHHHHHHHhcCCHHH
Q 010342          366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP------SNIHDNYVYAAMIKGLCRSGKIHE  439 (512)
Q Consensus       366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~  439 (512)
                      +++.|.++|.+..... |.|+..++-+.-.....+.+.+|..+|+..+..      ....-..+++.|..+|.+.+.+++
T Consensus       395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            9999999999988753 667788888888888889999999999987621      001134478999999999999999


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHh
Q 010342          440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL  500 (512)
Q Consensus       440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  500 (512)
                      |+..+++.+... +.+..++.++.-.|...|+++.|.+.|.+.+-  +.||..+-..+++.
T Consensus       474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence            999999999875 44888999999999999999999999999886  78988766666543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=4e-13  Score=120.54  Aligned_cols=281  Identities=13%  Similarity=0.088  Sum_probs=196.9

Q ss_pred             chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHccCChhhHHHH
Q 010342          189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD--VDRTRICNIYLRALCLIKNPTELLNV  266 (512)
Q Consensus       189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~  266 (512)
                      +..+|...|....+ .+.-.......+..+|...+++++|+++|+.+.....  ..+..+|...+--+   .+. -++..
T Consensus       334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~-v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDE-VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hhh-HHHHH
Confidence            45677777777433 2233446667777888888888888888888765321  11233444433222   111 12222


Q ss_pred             H-HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC
Q 010342          267 L-VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR  345 (512)
Q Consensus       267 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  345 (512)
                      + ..+.+.. +-.+.+|-++.++|.-+++.+.|++.|++..+.+  +....+|+.+..-+.....++.|...|+..+   
T Consensus       409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al---  482 (638)
T KOG1126|consen  409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL---  482 (638)
T ss_pred             HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh---
Confidence            2 2222222 3467788888888888899999999998888765  5577888888888888888888888887755   


Q ss_pred             CCCCChhhH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 010342          346 GYSPGIVTY---NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY  422 (512)
Q Consensus       346 ~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  422 (512)
                        ..|+..|   ..+...|.+.++++.|+-.|+...+.+ |-+......+...+.+.|+.++|+++++++...+ +.|..
T Consensus       483 --~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l  558 (638)
T KOG1126|consen  483 --GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPL  558 (638)
T ss_pred             --cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCch
Confidence              3344444   446677888888999999888888765 5566777888888888889999999999887665 44555


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      .--..+..+...+++++|...++++.+.- +-+...+..+...|.+.|+.+.|+.-|--|.+.
T Consensus       559 ~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            55556667777888899999888888752 335566777888888889888888888777763

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.61  E-value=8.5e-12  Score=105.35  Aligned_cols=292  Identities=15%  Similarity=0.083  Sum_probs=183.9

Q ss_pred             cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHH
Q 010342          152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV  231 (512)
Q Consensus       152 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  231 (512)
                      .|+|..|+++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.++.+..-.++...+....+.....||++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            35555555555554444322 22233333444444555555555555554432233334444444455555555555555


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD-------VITLNTVINGFCKMGRIEEALKVLND  304 (512)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~  304 (512)
                      +..+.+. .+..+.......++|.+.|++..+..++..+.+.+.-.+       ..+|..+++-....+..+.-...|++
T Consensus       176 v~~ll~~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEM-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHh-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            5555432 333344555555555555555555555555555544332       23566667666666666666677777


Q ss_pred             HhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 010342          305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA  384 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  384 (512)
                      ....-  +.++..-.+++.-+.+.|+.++|.+++.+.++. +..|+   . ...-.+.+.++...-++..+...+.. +.
T Consensus       255 ~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~  326 (400)
T COG3071         255 QPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PE  326 (400)
T ss_pred             ccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence            66543  456677778888889999999999999887744 23333   2 22234567788888777777776642 55


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010342          385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN  455 (512)
Q Consensus       385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  455 (512)
                      ++..+..|...|.+.+.+.+|...|+...+  ..|+..+|+.+.+++.+.|+..+|.++.++....-.+|+
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            667888999999999999999999998765  478899999999999999999999999988765433443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.5e-12  Score=116.89  Aligned_cols=290  Identities=11%  Similarity=-0.003  Sum_probs=215.7

Q ss_pred             ChhhHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCchhHHHHHHHHHHhCCC--CCchhhHHHHHHHHhccCCHHHHHH
Q 010342          154 RNHGASRVVYVMRKRGLTPSL-VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--LPSEHTYKVLVEGLCGESDLEKARK  230 (512)
Q Consensus       154 ~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~  230 (512)
                      +..+|...|..+...  .+|. .+...+.++|...+++++|..+|+.+.+...  .-+...|.+.+-..-    -+-+..
T Consensus       334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq----~~v~Ls  407 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ----DEVALS  407 (638)
T ss_pred             HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH----hhHHHH
Confidence            456777888775554  2333 4556678888888888888888888876421  125567777665442    233344


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 010342          231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF  310 (512)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  310 (512)
                      .+.+-.-.-.+..+.+|-.+..+|.-+++.+.|++.|.+..+.... ...+|+.+..-+.....+|.|...|+...... 
T Consensus       408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-  485 (638)
T KOG1126|consen  408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-  485 (638)
T ss_pred             HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence            4433333445666778888888888888999998888888776433 67888888888888999999999999988543 


Q ss_pred             CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHH
Q 010342          311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA  390 (512)
Q Consensus       311 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  390 (512)
                       +.+-..|.-+...|.+.++++.|.-.|++++.-.  +.+.+....+...+.+.|+.++|+.+++++.... +-|+..--
T Consensus       486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~  561 (638)
T KOG1126|consen  486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY  561 (638)
T ss_pred             -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence             3445556667788999999999999998865433  4456667778888899999999999999998865 34555444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010342          391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI  456 (512)
Q Consensus       391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  456 (512)
                      ..+..+...+++++|...++++.+. ++.+..++..+...|.+.|+.+.|+.-|.-+.+..++++.
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            5566777889999999999999865 3556678888999999999999999999888887555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=1.5e-10  Score=96.30  Aligned_cols=423  Identities=12%  Similarity=0.026  Sum_probs=260.0

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER   82 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~   82 (512)
                      ++...|++++|...+..+.+.. .|+...+-.|.-.+.-.|.+.+|..+-.+..+     ++-.-..+++.-.+.++-++
T Consensus        66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~  139 (557)
T KOG3785|consen   66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKR  139 (557)
T ss_pred             HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHH
Confidence            5778999999999999988864 44677788888888889999999988776543     44455566677778888777


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHH-HHHHHHhcCChhhHHHH
Q 010342           83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRV  161 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~  161 (512)
                      -....+.+-+...+          --+|....-..-.+.+|++++.++...+  |.-...|. +.-+|.+..-++-+.++
T Consensus       140 ~~~fh~~LqD~~Ed----------qLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqev  207 (557)
T KOG3785|consen  140 ILTFHSSLQDTLED----------QLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEV  207 (557)
T ss_pred             HHHHHHHHhhhHHH----------HHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHH
Confidence            77666555433211          1235555555667899999999988765  33344444 34567788888999999


Q ss_pred             HHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHH-HHhccCCHHHHHHHHHHHHhCCC
Q 010342          162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE-GLCGESDLEKARKVLQFMLSKKD  240 (512)
Q Consensus       162 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~  240 (512)
                      +....+. .+.++...|.......+.=+...|.+-...+...+-..-+ .-.-+++ -+.--.+-+.|.+++-.+..  .
T Consensus       208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNLVvFrngEgALqVLP~L~~--~  283 (557)
T KOG3785|consen  208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNLVVFRNGEGALQVLPSLMK--H  283 (557)
T ss_pred             HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCeEEEeCCccHHHhchHHHh--h
Confidence            9887775 2223344444444433432233344444444333211100 0011111 11112344667777665542  2


Q ss_pred             CCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCCCCC
Q 010342          241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-------RIEEALKVLNDMVAGKFCAP  313 (512)
Q Consensus       241 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~  313 (512)
                      .|.  .-..++-.|.+.++.++|..+...+.-.  .|-......++  ++..|       ...-|.+.|.-.-.++....
T Consensus       284 IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD  357 (557)
T KOG3785|consen  284 IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECD  357 (557)
T ss_pred             ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence            222  2334555677889999998887665311  12222222222  22222       35557777766555443223


Q ss_pred             cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 010342          314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI  393 (512)
Q Consensus       314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  393 (512)
                      +.....++..++.-..++++.+..+.. ++..=...|...+ .+.++++..|++.+|+++|-.+....++.+..-...|.
T Consensus       358 TIpGRQsmAs~fFL~~qFddVl~YlnS-i~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LA  435 (557)
T KOG3785|consen  358 TIPGRQSMASYFFLSFQFDDVLTYLNS-IESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLA  435 (557)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHH
Confidence            334455666666667778888887766 3333233344444 47788999999999999998776654443333345566


Q ss_pred             HHHHhcCCHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 010342          394 DGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN  460 (512)
Q Consensus       394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  460 (512)
                      ++|.+.+.++.|..++-++..   +.+.. ....+..-|.+.+.+=-|.+.|+.+...  .|++..|.
T Consensus       436 rCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe  498 (557)
T KOG3785|consen  436 RCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE  498 (557)
T ss_pred             HHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence            899999999998887766532   22333 3445557788889888888899888776  56666664

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.56  E-value=1.4e-09  Score=97.62  Aligned_cols=466  Identities=11%  Similarity=0.079  Sum_probs=241.7

Q ss_pred             ccccCcHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342            4 LCGLSRVGEAHKLFFDMKSRG-HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER   82 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~   82 (512)
                      +.++|++-..+..|++.+..= +..-...|...+...-..+-++-+..++++.++.    ++..-...|..+...++.++
T Consensus       112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e  187 (835)
T KOG2047|consen  112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE  187 (835)
T ss_pred             HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence            456777777777777766551 1112335777777777777777777777777763    34445566667777777777


Q ss_pred             HHHHHHHHHHHhhhcCCCCc-chH--------------------------------------hHHHHHHHHHccCChhHH
Q 010342           83 ANVLMFKLWERMKEEEDLSV-NNA--------------------------------------AFANLVDSLCREGYVNEV  123 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~-~~~--------------------------------------~~~~l~~~~~~~g~~~~a  123 (512)
                      |.+.+..++.+-.......+ +..                                      .+.+|.+.|.+.|.++.|
T Consensus       188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~eka  267 (835)
T KOG2047|consen  188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKA  267 (835)
T ss_pred             HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence            76666555432221111111 111                                      244455555555555555


Q ss_pred             HHHHHhcCCCCCCCcchhHHHHHHHHHhcCC----------------------hhhHHHHHHHHHHcCC-----------
Q 010342          124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGR----------------------NHGASRVVYVMRKRGL-----------  170 (512)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~g~-----------  170 (512)
                      ..+|++....-  .++.-|..+.++|+.-..                      ++-....|+.+.....           
T Consensus       268 rDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn  345 (835)
T KOG2047|consen  268 RDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN  345 (835)
T ss_pred             HHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence            55554433221  122222333333321100                      0111122222221110           


Q ss_pred             CCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCC------chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-
Q 010342          171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP------SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-  243 (512)
Q Consensus       171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-  243 (512)
                      +.++..|..-..  ...|+..+-...|.++++. +.|      -...|..+...|-..|+++.|..+|++...-+.+.- 
T Consensus       346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~  422 (835)
T KOG2047|consen  346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE  422 (835)
T ss_pred             CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence            001112222111  1234455555555555542 122      123567777788888888888888887765433222 


Q ss_pred             --cccHHHHHHHHHccCChhhHHHHHHHHHhcCCCC-----------------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          244 --TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP-----------------DVITLNTVINGFCKMGRIEEALKVLND  304 (512)
Q Consensus       244 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~  304 (512)
                        ..+|-.....-.+..+++.|+++++......-.|                 +...|...++.-...|-++....++++
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence              2234444445555677777777776654322111                 223445555555666778888888888


Q ss_pred             HhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc---cCCHHHHHHHHHHHHhCC
Q 010342          305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR---LRRVEEAKEVFNCMLGIG  381 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~  381 (512)
                      +.+.....|..  .......+-.+.-++++.+.+++-+.-...+.-...|+..+.-+.+   ...++.|..+|++.++ |
T Consensus       503 iidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~  579 (835)
T KOG2047|consen  503 IIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G  579 (835)
T ss_pred             HHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence            87765433332  2222223445566788888887755444333334556665554433   3468899999999988 5


Q ss_pred             CCCChHhHHHH--HHHHHhcCCHHHHHHHHHHhhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 010342          382 VVADSTTYAIV--IDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV  457 (512)
Q Consensus       382 ~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  457 (512)
                      .+|...-+-.|  ...-.+.|-...|..+++++... +++.  ...|+..|.--...=-+.....++++.++.  -|+..
T Consensus       580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~  656 (835)
T KOG2047|consen  580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSK  656 (835)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHH
Confidence            66544322222  22223457777888888886532 2322  125565554433333334455566666554  34433


Q ss_pred             hHHH---HHHHHHhcCCHHHHHHHHHHHHH
Q 010342          458 CYNV---VIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       458 ~~~~---l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .-..   ....-++.|..++|..++....+
T Consensus       657 ~r~mclrFAdlEtklGEidRARaIya~~sq  686 (835)
T KOG2047|consen  657 AREMCLRFADLETKLGEIDRARAIYAHGSQ  686 (835)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence            3222   22333456777777776665544

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.53  E-value=5.8e-11  Score=110.16  Aligned_cols=254  Identities=17%  Similarity=0.164  Sum_probs=169.6

Q ss_pred             HHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHh
Q 010342           15 KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM   94 (512)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   94 (512)
                      .++-.+...|+.|+..+|.++|.-|+..|+.+.|- +|.-|.-+..+-+...++.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            45667788899999999999999999999999998 9999988776667778888888888888777652          


Q ss_pred             hhcCCCCcchHhHHHHHHHHHccCChhH---HHHHHHhc----CCCCCC-CcchhH-------------HHHHHHHHhcC
Q 010342           95 KEEEDLSVNNAAFANLVDSLCREGYVNE---VFRIAEDM----PQGKSV-NEEFAC-------------GHMIDSLCRSG  153 (512)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~----~~~~~~-~~~~~~-------------~~l~~~~~~~~  153 (512)
                            .|...+|..|..+|...||+..   ..+.++.+    ...|.. |....+             ...+....-.|
T Consensus        80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg  153 (1088)
T KOG4318|consen   80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG  153 (1088)
T ss_pred             ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH
Confidence                  5677889999999999988654   33322222    122221 111110             11222223334


Q ss_pred             ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc-hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 010342          154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG-CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL  232 (512)
Q Consensus       154 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  232 (512)
                      -++.+++++..+...... .  ++...++-+..... +++.........  + .|+..+|..++.+....|+.+.|..++
T Consensus       154 lwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~--e-~~~s~~l~a~l~~alaag~~d~Ak~ll  227 (1088)
T KOG4318|consen  154 LWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLV--E-APTSETLHAVLKRALAAGDVDGAKNLL  227 (1088)
T ss_pred             HHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhh--c-CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence            444444444333322110 0  11112333333222 222222222222  2 588999999999999999999999999


Q ss_pred             HHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 010342          233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR  294 (512)
Q Consensus       233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  294 (512)
                      ..|.+.|.+....-|..++-+   .++...+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus       228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            999999988887766666655   78888888899999999999999998877776666443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=3.4e-10  Score=100.05  Aligned_cols=285  Identities=10%  Similarity=-0.013  Sum_probs=199.4

Q ss_pred             CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 010342          173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR  252 (512)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  252 (512)
                      ++.....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+ ..|..+.+|..+.-
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-~yP~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-LYPSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCCcchhhHHH
Confidence            44444555556666788888888888887754 56666666667777788887776666666664 35555667777777


Q ss_pred             HHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH
Q 010342          253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ  332 (512)
Q Consensus       253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  332 (512)
                      .|...|+.++|.+.|.+....... =...|-.+...|+-.|..+.|+..+....+.-  +.....+--+..-|.+.+..+
T Consensus       321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccHH
Confidence            777778888888888876654332 23467778888888888888888887766532  222222333444577788888


Q ss_pred             HHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----C--CCCChHhHHHHHHHHHhcCCHHHHH
Q 010342          333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----G--VVADSTTYAIVIDGLCESNQLDEAK  406 (512)
Q Consensus       333 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~  406 (512)
                      .|.+.|.+.+...  +.|+...+-+.-.....+.+.+|..+|+..+..    +  ...-..+++.|..+|.+.+.+++|+
T Consensus       398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            8888887754333  445666777766667778888888888877631    0  0113345788888888899999999


Q ss_pred             HHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      ..++..+... +.+..++.++.-.|...|+++.|.+.|.+....  .|+..+-..++..+.
T Consensus       476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence            9998888664 667888888888888889999999988887654  677656555555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=4.3e-11  Score=102.14  Aligned_cols=201  Identities=11%  Similarity=0.074  Sum_probs=158.6

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV  357 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  357 (512)
                      ....+..+...+...|++++|...+++..+..  +.+...+..+...+...|++++|.+.+.+.+...  +.+...+..+
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~  105 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNY  105 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence            34566777888888899999999998887654  4567777888888888999999999888876543  3445667777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342          358 LRGLFRLRRVEEAKEVFNCMLGIGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK  436 (512)
Q Consensus       358 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  436 (512)
                      ...+...|++++|...+++...... +.....+..+..++...|++++|...+++..... +.+...+..+...+...|+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence            8888889999999999998876422 2234567778888899999999999999988654 4456678888899999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       437 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      +++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus       185 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       185 YKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            999999999988762 44666777788888889999999998888765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=5.8e-09  Score=88.84  Aligned_cols=317  Identities=12%  Similarity=0.057  Sum_probs=228.8

Q ss_pred             CCCCcchHHHHHHHHhc--cCchhHHHHHHHHHHhC-CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 010342          170 LTPSLVSYNSIVHGLCK--HGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI  246 (512)
Q Consensus       170 ~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  246 (512)
                      +.|+..+....+.+++.  .++...+...+-.+... -++-|+.....+..++...|+.++|...|++.... .+.....
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-dpy~i~~  268 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-NPDNVEA  268 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-Chhhhhh
Confidence            34444444455555544  45555555555444433 45668889999999999999999999999988643 3333445


Q ss_pred             HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342          247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL  326 (512)
Q Consensus       247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (512)
                      ...+...+.+.|+.+....+...+....-. +...|..-.......++++.|+.+-++..+..  +.+...+..-...+.
T Consensus       269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~  345 (564)
T KOG1174|consen  269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLI  345 (564)
T ss_pred             HHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHH
Confidence            556666677888888888777776654311 33334334444556688999999999988776  567777777777888


Q ss_pred             hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH-HHHHh-cCCHHH
Q 010342          327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI-DGLCE-SNQLDE  404 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~  404 (512)
                      ..++.++|.-.|+....-.  +-+..+|..|+..|...|.+.+|...-+...+. ++.+..+...+. ..+.- ...-++
T Consensus       346 ~~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK  422 (564)
T KOG1174|consen  346 ALERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK  422 (564)
T ss_pred             hccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence            9999999999898753222  457789999999999999999998887776653 355666666653 33332 334588


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      |.+++++..+.. +.-....+.+...+...|..++++.++++....  .||....+.|...+...+.+++|.+.|.....
T Consensus       423 AKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  423 AKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999999887653 333446778888899999999999999988774  78999999999999999999999999999887


Q ss_pred             CCCCCC-hHHHHHHH
Q 010342          485 NGLNPD-AVTWRILD  498 (512)
Q Consensus       485 ~~~~p~-~~~~~~l~  498 (512)
                        +.|. ..+...|-
T Consensus       500 --~dP~~~~sl~Gl~  512 (564)
T KOG1174|consen  500 --QDPKSKRTLRGLR  512 (564)
T ss_pred             --cCccchHHHHHHH
Confidence              4454 45555553

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.46  E-value=4.3e-11  Score=110.98  Aligned_cols=275  Identities=19%  Similarity=0.177  Sum_probs=137.5

Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHh
Q 010342           50 KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED  129 (512)
Q Consensus        50 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  129 (512)
                      .++-.+...|+.|+..||..+|.-|+..|+.+.|-     ++..|... ....+...|+.++.+....++.+.+.     
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-----if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-----   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-----IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-----   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-----chhhhhcc-cccccchhHHHHHhcccccccccCCC-----
Confidence            45666677777777777777777777777777663     23333332 45555666666666666666655443     


Q ss_pred             cCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHh-CCCCCc
Q 010342          130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPS  208 (512)
Q Consensus       130 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~  208 (512)
                            .|...+|..|..+|...||...    |+...+        -...+...+...|.......++..+.- .+..||
T Consensus        80 ------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd  141 (1088)
T KOG4318|consen   80 ------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD  141 (1088)
T ss_pred             ------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence                  2556666666666666666654    222221        112233334444444444444433221 122333


Q ss_pred             hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 010342          209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING  288 (512)
Q Consensus       209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  288 (512)
                      ..+   .+....-.|-++.+.+++..+.......   .+..+++-+....  .-..+++.......-.|++.+|..++.+
T Consensus       142 a~n---~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~  213 (1088)
T KOG4318|consen  142 AEN---AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKR  213 (1088)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence            322   2223334455666666554443211111   1111122222111  1122222222211114566666666666


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCC
Q 010342          289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR  366 (512)
Q Consensus       289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  366 (512)
                      -.-.|+.+.|..++.+|.+.+. +-+..-|-.++-+   .++...+..++ +.|...|+.|+..|+...+-.+...|.
T Consensus       214 alaag~~d~Ak~ll~emke~gf-pir~HyFwpLl~g---~~~~q~~e~vl-rgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  214 ALAAGDVDGAKNLLYEMKEKGF-PIRAHYFWPLLLG---INAAQVFEFVL-RGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHhcCchhhHHHHHHHHHHcCC-Ccccccchhhhhc---CccchHHHHHH-HHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            6666777777777777766665 4444444444333   44444444444 335666677776666666655555333

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.46  E-value=1e-08  Score=92.51  Aligned_cols=434  Identities=13%  Similarity=0.078  Sum_probs=256.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL  110 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (512)
                      .|..++..| ..+++.+.+.+.+.+.+. .+-...|.....-.+...|+.++|.......++      +-.-+...|..+
T Consensus        10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr------~d~~S~vCwHv~   81 (700)
T KOG1156|consen   10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR------NDLKSHVCWHVL   81 (700)
T ss_pred             HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhc------cCcccchhHHHH
Confidence            355555544 567788888888888773 333555665555556667788888665544433      222344567777


Q ss_pred             HHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCch
Q 010342          111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC  190 (512)
Q Consensus       111 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~  190 (512)
                      .-.+....++++|++.|......+. .+...+.-+.-.-.+.++++........+.+..+. ....|..+..++.-.|+.
T Consensus        82 gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen   82 GLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEY  159 (700)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Confidence            7777777888888888888776553 34455555555556677887777777777665222 445777888888888899


Q ss_pred             hHHHHHHHHHHhCC-CCCchhhHHHHH------HHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhH
Q 010342          191 MRAYQLLEEGIQFG-YLPSEHTYKVLV------EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL  263 (512)
Q Consensus       191 ~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  263 (512)
                      ..|..++++..+.. -.|+...+.-..      ....+.|.++.|.+.+..... ........-..-...+.+.+++++|
T Consensus       160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA  238 (700)
T KOG1156|consen  160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKLAFEETKADLLMKLGQLEEA  238 (700)
T ss_pred             HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHHHHhhhHHHHHHHHhhHHhH
Confidence            99988888887654 245554443332      234567777877777765542 2333333444556677788889999


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHH-HHHHhcCCHHHHH-HHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHH-HHHHh
Q 010342          264 LNVLVFMLQTQCQPDVITLNTVI-NGFCKMGRIEEAL-KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL-NLLYQ  340 (512)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~  340 (512)
                      ..+++.++...  ||...|.... .++.+..+.-++. .+|....+..   |.......+--............ .++..
T Consensus       239 ~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y---~r~e~p~Rlplsvl~~eel~~~vdkyL~~  313 (700)
T KOG1156|consen  239 VKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY---PRHECPRRLPLSVLNGEELKEIVDKYLRP  313 (700)
T ss_pred             HHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC---cccccchhccHHHhCcchhHHHHHHHHHH
Confidence            99998888774  4555554444 4443333333333 6666665432   22222111111122223333333 33333


Q ss_pred             hcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh----CC----------CCCChH--hHHHHHHHHHhcCCHHH
Q 010342          341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG----IG----------VVADST--TYAIVIDGLCESNQLDE  404 (512)
Q Consensus       341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~g~~~~  404 (512)
                      .+ +.|+++   ++..+...|-.....+-..++.-.+..    .|          -+|...  ++-.++..|-+.|+++.
T Consensus       314 ~l-~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~  389 (700)
T KOG1156|consen  314 LL-SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV  389 (700)
T ss_pred             Hh-hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence            33 445444   333333333222221111122111111    11          134443  34456677778888888


Q ss_pred             HHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHD-NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      |...++..+.+  .|+ ...|..-.+.+...|++++|...+++..+.+ .||...-..-..-..++++.++|.++.....
T Consensus       390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT  466 (700)
T KOG1156|consen  390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT  466 (700)
T ss_pred             HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence            88888888754  333 3355566677888888888888888887765 4465554456666677888888888888777


Q ss_pred             HCCC
Q 010342          484 KNGL  487 (512)
Q Consensus       484 ~~~~  487 (512)
                      +.|.
T Consensus       467 r~~~  470 (700)
T KOG1156|consen  467 REGF  470 (700)
T ss_pred             hccc
Confidence            6664

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=1.2e-11  Score=101.36  Aligned_cols=236  Identities=14%  Similarity=0.053  Sum_probs=197.1

Q ss_pred             cHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342          246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL  325 (512)
Q Consensus       246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  325 (512)
                      .-..+.++|.+.|.+.+|.+.+...++..  |-+.||..|-..|.+..+++.|+.++.+-.+..  +.++.....+...+
T Consensus       225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHH
Confidence            34567789999999999999998888874  455688888999999999999999999988764  45555556677888


Q ss_pred             hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342          326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA  405 (512)
Q Consensus       326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  405 (512)
                      -..++.++|.++++..++..  +.++....++...|.-.++.+.|...|+++...|+ -++..|+.+.-+|...+++|-+
T Consensus       301 eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhh
Confidence            88999999999999987665  55666777788888999999999999999999984 5888999999999999999999


Q ss_pred             HHHHHHhhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          406 KRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      ..-|++....--.|+  ..+|-.+.......||+..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++...
T Consensus       378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            999999875443343  3478888888889999999999999888775 3367889999999999999999999999987


Q ss_pred             HCCCCCCh
Q 010342          484 KNGLNPDA  491 (512)
Q Consensus       484 ~~~~~p~~  491 (512)
                      .  +.|+.
T Consensus       457 s--~~P~m  462 (478)
T KOG1129|consen  457 S--VMPDM  462 (478)
T ss_pred             h--hCccc
Confidence            6  56663

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=7.2e-11  Score=100.75  Aligned_cols=195  Identities=10%  Similarity=0.043  Sum_probs=133.2

Q ss_pred             HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC
Q 010342          250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG  329 (512)
Q Consensus       250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  329 (512)
                      +...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+..  +.+...+..+...+...|
T Consensus        37 la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~g  113 (234)
T TIGR02521        37 LALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTFLCQQG  113 (234)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcc
Confidence            3334444444444444444443332 2245566667777777788888888888777654  445566777777778888


Q ss_pred             CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 010342          330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW  409 (512)
Q Consensus       330 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  409 (512)
                      ++++|.+.+.+.+.....+.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+
T Consensus       114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~  192 (234)
T TIGR02521       114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYL  192 (234)
T ss_pred             cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888887766432223334456667777888888888888888887753 345567777888888888888888888


Q ss_pred             HHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       410 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      ++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus       193 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       193 ERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            888765 245566667777788888888888888777654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.45  E-value=2.4e-08  Score=92.03  Aligned_cols=381  Identities=14%  Similarity=0.017  Sum_probs=224.4

Q ss_pred             CCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-cchH
Q 010342           99 DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-LVSY  177 (512)
Q Consensus        99 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~  177 (512)
                      ....++..|..|.-++...|+++.+-+.|++....-. .....|..+...+...|.-..|..+++.-......|+ +..+
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            4456677777777777777888777777777554322 3345666677777777777777777766554432233 3333


Q ss_pred             HHHHHHHhc-cCchhHHHHHHHHHHhC--CC--CCchhhHHHHHHHHhc----c-------CCHHHHHHHHHHHHhCCCC
Q 010342          178 NSIVHGLCK-HGGCMRAYQLLEEGIQF--GY--LPSEHTYKVLVEGLCG----E-------SDLEKARKVLQFMLSKKDV  241 (512)
Q Consensus       178 ~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~----~-------g~~~~a~~~~~~~~~~~~~  241 (512)
                      ...-..|.+ .+..++++++..+++..  +.  ...+..|..+.-+|..    .       ....++.+.+++..+.+ +
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~  475 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P  475 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence            333334433 45566666665555541  10  1122233333222211    1       11234555555555433 3


Q ss_pred             CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----------
Q 010342          242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC----------  311 (512)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------  311 (512)
                      .++.....+..-|...++.+.|.+..++..+.+...+...|..+.-.+.-.+++.+|+.+.+........          
T Consensus       476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~  555 (799)
T KOG4162|consen  476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH  555 (799)
T ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence            3334444555556667777777777777777755666777777777777777777777777665543210          


Q ss_pred             --------CCcHHHHHHHHHHHhh-----------------------cCCHHHHHHHHHh-----------h-----ccc
Q 010342          312 --------APDAVTFTTIIFGLLN-----------------------VGRIQEALNLLYQ-----------V-----MPQ  344 (512)
Q Consensus       312 --------~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~-----------~-----~~~  344 (512)
                              .....|...++..+-.                       .++..++......           +     ++.
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~  635 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS  635 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence                    0001111111111110                       0011111110000           0     111


Q ss_pred             CCCCCCh--------hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342          345 RGYSPGI--------VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS  416 (512)
Q Consensus       345 ~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  416 (512)
                      ..+.|++        ..|......+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|......+
T Consensus       636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld  714 (799)
T KOG4162|consen  636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD  714 (799)
T ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence            1112221        123444556667777888887777776642 4556677777778888889999999998887665


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          417 NIHDNYVYAAMIKGLCRSGKIHEAVH--FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       417 ~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                       +.++....++..++.+.|+..-|..  ++..+.+.+ +.+...|..+...+.+.|+.+.|.+-|....+
T Consensus       715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence             5567788889999999988777777  888888876 34788899999999999999999888888765

>PRK12370 invasion protein regulator; Provisional

Probab=99.45  E-value=2e-10  Score=109.65  Aligned_cols=251  Identities=9%  Similarity=-0.011  Sum_probs=171.5

Q ss_pred             CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH---------ccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 010342          224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALC---------LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR  294 (512)
Q Consensus       224 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  294 (512)
                      ++++|...|++..+. .+.....+..+..++.         ..++.++|...+++..+..+. +...+..+...+...|+
T Consensus       276 ~~~~A~~~~~~Al~l-dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        276 SLQQALKLLTQCVNM-SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence            356677777777643 2223334444433332         224467888888888877644 67778888888889999


Q ss_pred             HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 010342          295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF  374 (512)
Q Consensus       295 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  374 (512)
                      +++|...|++..+..  +.+...+..+...+...|++++|...+++.+...+..  ...+..++..+...|++++|...+
T Consensus       354 ~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        354 YIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--AAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhccCHHHHHHHH
Confidence            999999999998876  5677788888999999999999999999977554222  223333444566789999999999


Q ss_pred             HHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 010342          375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVT  453 (512)
Q Consensus       375 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~  453 (512)
                      +++.+...+.++..+..+..++...|+.++|...++++.... +.+....+.+...|...|  ++|...++.+.+. .-.
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~  506 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI  506 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence            998875423345567778888999999999999999876442 334445566666777777  4788877777653 123


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNG  486 (512)
Q Consensus       454 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  486 (512)
                      |....+  +...+.-.|+.+.+..+ +++.+.|
T Consensus       507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            333333  33444446777666555 7776643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1.1e-08  Score=91.25  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=58.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHH
Q 010342           36 IHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC  115 (512)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  115 (512)
                      ++.+...|++++|+....++...+ +-|...+..=+-+..+.+.++.|..+...-    +   ....+...+  +=.+||
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~----~---~~~~~~~~~--fEKAYc   88 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN----G---ALLVINSFF--FEKAYC   88 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc----c---hhhhcchhh--HHHHHH
Confidence            344455666666666666666543 233444445455556666666665322111    0   001111110  233443


Q ss_pred             --ccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010342          116 --REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR  168 (512)
Q Consensus       116 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  168 (512)
                        +.+..++|+..++-...    .+..+...-...+.+.|++++|..+|+.+.+.
T Consensus        89 ~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn  139 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKN  139 (652)
T ss_pred             HHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence              55666666666662222    12224444445566666777777777666554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.43  E-value=1.1e-08  Score=92.31  Aligned_cols=423  Identities=14%  Similarity=0.085  Sum_probs=265.4

Q ss_pred             cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN   84 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   84 (512)
                      ...|+-++|......-.+.+++ +.+.|..+.-.+-...++++|+..|......+ +-|...|.-+--.-++.++++...
T Consensus        52 ~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             hcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence            3568888888888887776555 67789988888888889999999999988864 345566777666667778877776


Q ss_pred             HHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCC-CCCcchhHHHH------HHHHHhcCChhh
Q 010342           85 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK-SVNEEFACGHM------IDSLCRSGRNHG  157 (512)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~~~~~~  157 (512)
                      ..-.++++..+.      ....|..+..++.-.|+...|..+++...+.. -.|+...+...      .......|.++.
T Consensus       130 ~tr~~LLql~~~------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~  203 (700)
T KOG1156|consen  130 ETRNQLLQLRPS------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK  203 (700)
T ss_pred             HHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            655555543222      24566777788888899999999988876654 23444444332      234556788888


Q ss_pred             HHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchh-hHHHHHHHHhc-cCCHHHHHHHHHHH
Q 010342          158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH-TYKVLVEGLCG-ESDLEKARKVLQFM  235 (512)
Q Consensus       158 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~-~g~~~~a~~~~~~~  235 (512)
                      |++.+...... +.-....-.+-...+.+.++.++|..++..++...  ||.. .|..+..++.+ .+..+....+|...
T Consensus       204 ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l  280 (700)
T KOG1156|consen  204 ALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAIL  280 (700)
T ss_pred             HHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            88877665543 11122233345566778899999999999998753  5544 44444445433 33333334666666


Q ss_pred             HhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHhhCCC-
Q 010342          236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL----NDMVAGKF-  310 (512)
Q Consensus       236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~-  310 (512)
                      .+. .+........-+.......-.+..-.++....+.|+++   ++..+...|-.....+-..++.    ..+...+. 
T Consensus       281 s~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f  356 (700)
T KOG1156|consen  281 SEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF  356 (700)
T ss_pred             hhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence            532 22222222222233333333445556777778888764   3444444443322222111221    11111110 


Q ss_pred             --------CCCcHHHHH--HHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342          311 --------CAPDAVTFT--TIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLG  379 (512)
Q Consensus       311 --------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  379 (512)
                              -+|....|.  .++..+-..|+++.|..+++..+..   .|+ +..|..-.+.+...|+++.|..++++..+
T Consensus       357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e  433 (700)
T KOG1156|consen  357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE  433 (700)
T ss_pred             CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence                    145554444  5677788999999999999886533   444 34455556888999999999999999998


Q ss_pred             CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH--------hHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 010342          380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY--------VYAAM--IKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       380 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      .+ .+|...-..-..-..+.++.++|.++.....+.|.  +..        +|-.+  ..+|.++|++..|.+-|..+.
T Consensus       434 lD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  434 LD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             cc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            75 55655544555666778999999999998877664  211        22222  346777777777766655443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.43  E-value=2.2e-09  Score=98.99  Aligned_cols=289  Identities=13%  Similarity=0.076  Sum_probs=170.6

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hc----
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL-RT----   77 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~----   77 (512)
                      .+.+.|++++|++.++.-... +.............+.+.|+.++|..++..+.+.+  |+...|...+..+. ..    
T Consensus        13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence            456789999999999886665 44346677888999999999999999999999985  77766655554444 22    


Q ss_pred             -CChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChh-HHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCCh
Q 010342           78 -RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN-EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN  155 (512)
Q Consensus        78 -~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  155 (512)
                       .+.+...+++.++....|...       ....+.-.+..-..+. .+..++..+..+|++   .+|+.+-..|......
T Consensus        90 ~~~~~~~~~~y~~l~~~yp~s~-------~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~  159 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKYPRSD-------APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKA  159 (517)
T ss_pred             cccHHHHHHHHHHHHHhCcccc-------chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHH
Confidence             234555555555544443321       1111111111112222 344455556666653   3555555556555555


Q ss_pred             hhHHHHHHHHHHc----C----------CCCCcc--hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 010342          156 HGASRVVYVMRKR----G----------LTPSLV--SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL  219 (512)
Q Consensus       156 ~~a~~~~~~~~~~----g----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  219 (512)
                      .-..+++......    +          -.|+..  ++..+...|...|++++|++.+++.++.. +-.+..|..-.+.+
T Consensus       160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil  238 (517)
T PF12569_consen  160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL  238 (517)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence            5555555554332    1          112222  33445566667788888888888777653 22356777777777


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhh--------HHHHHHHHHh
Q 010342          220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT--------LNTVINGFCK  291 (512)
Q Consensus       220 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~  291 (512)
                      -+.|++.+|.+.++.....+ ..+..+=+..+..+.+.|+.++|..++....+.+..|-...        ......+|.+
T Consensus       239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r  317 (517)
T PF12569_consen  239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR  317 (517)
T ss_pred             HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence            78888888888777776432 22223334445556667777777777766665543222211        1233556666


Q ss_pred             cCCHHHHHHHHHHHh
Q 010342          292 MGRIEEALKVLNDMV  306 (512)
Q Consensus       292 ~~~~~~a~~~~~~~~  306 (512)
                      .|++..|++.|..+.
T Consensus       318 ~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  318 QGDYGLALKRFHAVL  332 (517)
T ss_pred             HhhHHHHHHHHHHHH
Confidence            676666666555444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK12370 invasion protein regulator; Provisional

Probab=99.40  E-value=1.8e-10  Score=109.97  Aligned_cols=251  Identities=11%  Similarity=0.029  Sum_probs=164.4

Q ss_pred             CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh---------ccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC
Q 010342          153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---------KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES  223 (512)
Q Consensus       153 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  223 (512)
                      +++++|.+.|++..+..+. +...|..+..++.         ..+++++|...++++.+.. +.+...+..+...+...|
T Consensus       275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            4577888888887776322 3345555544333         2345788888888888764 446677777777888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN  303 (512)
Q Consensus       224 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  303 (512)
                      ++++|...+++..+. .+.+...+..+...+...|++++|...++...+..+. +...+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            888888888888764 3445567777788888888888888888888877544 22233344445666788999999998


Q ss_pred             HHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhC-C
Q 010342          304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-G  381 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~  381 (512)
                      +...... +.+...+..+..++...|+.++|...+.+....   .|+ ....+.+...|...|  +.+...++.+.+. .
T Consensus       431 ~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~  504 (553)
T PRK12370        431 ELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ  504 (553)
T ss_pred             HHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence            8876531 234555677777888899999999988775433   333 333445555666666  4777777776652 1


Q ss_pred             CCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342          382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS  416 (512)
Q Consensus       382 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  416 (512)
                      -.+....+  +-..|.-.|+-+.+... +++.+.+
T Consensus       505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            12222222  33445556666666555 7776543

>PF13041 PPR_2: PPR repeat family

Probab=99.39  E-value=1.4e-12  Score=79.08  Aligned_cols=50  Identities=38%  Similarity=0.691  Sum_probs=37.8

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc
Q 010342          454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN  503 (512)
Q Consensus       454 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  503 (512)
                      ||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.|+++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67777777777777777777777777777777777777777777777764

>PF13041 PPR_2: PPR repeat family

Probab=99.39  E-value=1.2e-12  Score=79.42  Aligned_cols=50  Identities=46%  Similarity=1.005  Sum_probs=48.3

Q ss_pred             CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 010342           27 PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR   76 (512)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~   76 (512)
                      ||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            79999999999999999999999999999999999999999999999864

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.39  E-value=2e-07  Score=84.29  Aligned_cols=452  Identities=11%  Similarity=0.106  Sum_probs=285.2

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010342           29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF  107 (512)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (512)
                      +..|..-++.+.++|+...-+..|++.+.. .+.-....|...+......+-++.+..++++.++-.|         ..-
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P---------~~~  172 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP---------EAR  172 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH---------HHH
Confidence            446778888888999999999999998764 2222445788888888888889899998888875433         234


Q ss_pred             HHHHHHHHccCChhHHHHHHHhcCCCC------CCCcchhHHHHHHHHHhcCChhh---HHHHHHHHHHcCCCCCc--ch
Q 010342          108 ANLVDSLCREGYVNEVFRIAEDMPQGK------SVNEEFACGHMIDSLCRSGRNHG---ASRVVYVMRKRGLTPSL--VS  176 (512)
Q Consensus       108 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~g~~p~~--~~  176 (512)
                      ...+..++..+++++|-+.+..+....      .+.+...|.-+.....+..+.-.   ...+++.+...  -+|.  ..
T Consensus       173 eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~L  250 (835)
T KOG2047|consen  173 EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFL  250 (835)
T ss_pred             HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHH
Confidence            558889999999999999998876532      22344556656555555443322   33333333322  2332  36


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhc----------------cCC------HHHHHHHHHH
Q 010342          177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----------------ESD------LEKARKVLQF  234 (512)
Q Consensus       177 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~------~~~a~~~~~~  234 (512)
                      |++|.+-|.+.|.+++|.++|++.+..-  .+..-|..+.++|+.                .|+      ++-...-|+.
T Consensus       251 w~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~  328 (835)
T KOG2047|consen  251 WCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES  328 (835)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence            8899999999999999999999887642  233333333333321                111      2223333444


Q ss_pred             HHhCCC-----------CCCcccHHHHHHHHHccCChhhHHHHHHHHHhcC-CC----CChhhHHHHHHHHHhcCCHHHH
Q 010342          235 MLSKKD-----------VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQ----PDVITLNTVINGFCKMGRIEEA  298 (512)
Q Consensus       235 ~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a  298 (512)
                      +.....           +.+...|..  ..-...|+..+....+.+..+.- +.    .-...|..+...|-..|+++.|
T Consensus       329 lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a  406 (835)
T KOG2047|consen  329 LMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA  406 (835)
T ss_pred             HHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence            333211           111111111  11223455666666666665431 11    1124577888999999999999


Q ss_pred             HHHHHHHhhCCCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCC----------CCC------ChhhHHHHHHH
Q 010342          299 LKVLNDMVAGKFCAPD--AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG----------YSP------GIVTYNAVLRG  360 (512)
Q Consensus       299 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~l~~~  360 (512)
                      ..+|++..+......+  ..+|......-.+..+++.|++++++......          .++      +...|...+..
T Consensus       407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl  486 (835)
T KOG2047|consen  407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL  486 (835)
T ss_pred             HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence            9999999876531111  34566666666788899999998877542110          011      23345555555


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhc---CC
Q 010342          361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRS---GK  436 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~---g~  436 (512)
                      --..|-++....+|+++.+..+. ++.+.......+..+.-++++.+++++-+..-..|+.. .|+..+.-+.+.   ..
T Consensus       487 eEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k  565 (835)
T KOG2047|consen  487 EESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK  565 (835)
T ss_pred             HHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence            56678899999999999987643 33333333334556667899999999877654455543 677777666553   36


Q ss_pred             HHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHH
Q 010342          437 IHEAVHFLYELVDSGVTPNIV--CYNVVIDGACKLSMKREAYQILREMRKNGLNPDA--VTWRILD  498 (512)
Q Consensus       437 ~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~  498 (512)
                      ++.|..+|++.++ |.+|...  .|-.....--+.|....|+.++++.... +++..  ..|+..|
T Consensus       566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I  629 (835)
T KOG2047|consen  566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYI  629 (835)
T ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence            8999999999999 5566432  2222233334568888999999997653 45543  3566655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=5.7e-11  Score=97.56  Aligned_cols=234  Identities=14%  Similarity=0.055  Sum_probs=196.5

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 010342          210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF  289 (512)
Q Consensus       210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  289 (512)
                      .--+.+.++|.+.|.+.+|++.++.-.+  ..+-+.+|..+.+.|.+..++..|+.++.+-++.- +.++....-+.+.+
T Consensus       224 wWk~Q~gkCylrLgm~r~AekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  224 WWKQQMGKCYLRLGMPRRAEKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHH
Confidence            3346788999999999999999998875  44566789999999999999999999999988764 33555556677888


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHH
Q 010342          290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE  369 (512)
Q Consensus       290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  369 (512)
                      ...++.++|.++++...+..  +.++....++...|.-.++++-|+..++++++ .| .-++..|+.+.-+|.-.++++-
T Consensus       301 eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG-~~speLf~NigLCC~yaqQ~D~  376 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MG-AQSPELFCNIGLCCLYAQQIDL  376 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHH-hc-CCChHHHhhHHHHHHhhcchhh
Confidence            88899999999999999876  67888888888999999999999999999774 44 3466789999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          370 AKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL  447 (512)
Q Consensus       370 a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  447 (512)
                      ++.-|.+.+..--.|+.  .+|-.+.......|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|++++|..++...
T Consensus       377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            99999998875444443  467778888888999999999999998765 667789999999999999999999999988


Q ss_pred             HHCC
Q 010342          448 VDSG  451 (512)
Q Consensus       448 ~~~~  451 (512)
                      .+..
T Consensus       456 ~s~~  459 (478)
T KOG1129|consen  456 KSVM  459 (478)
T ss_pred             hhhC
Confidence            7753

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.3e-07  Score=80.86  Aligned_cols=291  Identities=11%  Similarity=0.040  Sum_probs=213.8

Q ss_pred             HhcCChhhHHHHHHHHHHcC-CCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHH
Q 010342          150 CRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA  228 (512)
Q Consensus       150 ~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  228 (512)
                      +..++...+...+-.+.... ++-|+.....+.+.+...|+.++|...|++....+ +-+........-.+...|+.+..
T Consensus       207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~  285 (564)
T KOG1174|consen  207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD  285 (564)
T ss_pred             HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence            34455555555554444332 44467788899999999999999999999887543 12222222233345678899999


Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010342          229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG  308 (512)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  308 (512)
                      ..+...+.... ......|..-+......+++..|+.+-++.++.... +...+-.-...+...|+.++|.-.|+.....
T Consensus       286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L  363 (564)
T KOG1174|consen  286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML  363 (564)
T ss_pred             HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence            88888887543 223334444455566778899999998888876543 4555555567788889999999999998876


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH-HHH-HccCCHHHHHHHHHHHHhCCCCCC-
Q 010342          309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL-RGL-FRLRRVEEAKEVFNCMLGIGVVAD-  385 (512)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~-  385 (512)
                      .  +.+...|..++.+|...|...+|.-+-...++..  +.+..+...+. ..| ....--++|.++++...+.  .|+ 
T Consensus       364 a--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y  437 (564)
T KOG1174|consen  364 A--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY  437 (564)
T ss_pred             c--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence            5  5788999999999999999999998877766544  33444544442 222 2333457899999988875  344 


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      ....+.+...+...|..+.+..++++....  .||....+.|.+.+...+.+.+|.+.|....+.+
T Consensus       438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            446778889999999999999999998753  7899999999999999999999999999988764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.35  E-value=5.1e-09  Score=96.62  Aligned_cols=180  Identities=12%  Similarity=0.075  Sum_probs=120.2

Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C---------CCCCcHH--HHHHHHHHHhhc
Q 010342          264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG----K---------FCAPDAV--TFTTIIFGLLNV  328 (512)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------~~~~~~~--~~~~l~~~~~~~  328 (512)
                      ...+..+...|+++   +|+.+-..|......+-..+++......    +         ..+|+..  ++.-+.+.|...
T Consensus       131 ~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~  207 (517)
T PF12569_consen  131 DEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL  207 (517)
T ss_pred             HHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence            34445555555432   4555555555444444444454444321    0         1134443  345567778889


Q ss_pred             CCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 010342          329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF  408 (512)
Q Consensus       329 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  408 (512)
                      |++++|++.+++.+...  +..+..|..-.+.+-+.|++.+|...++...... ..|..+-+-.+..+.+.|++++|.++
T Consensus       208 g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~  284 (517)
T PF12569_consen  208 GDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKT  284 (517)
T ss_pred             CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999998877554  2335677777888889999999999999998875 45667777777888899999999999


Q ss_pred             HHHhhcCCCCCCHH------h--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          409 WDDIVWPSNIHDNY------V--YAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       409 ~~~~~~~~~~~~~~------~--~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      +....+.+..|-..      +  ......+|.+.|++..|++.|..+.+
T Consensus       285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99887666433221      1  24456788888998888877766554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.35  E-value=1.2e-08  Score=93.92  Aligned_cols=410  Identities=13%  Similarity=0.040  Sum_probs=227.7

Q ss_pred             CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010342           25 HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN  104 (512)
Q Consensus        25 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  104 (512)
                      +..|...|..|.-++...|++..+.+.|++.... .--....|..+-..+...|.-..|..+++.....-+    ..++.
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~----~ps~~  393 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE----QPSDI  393 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc----CCCcc
Confidence            4445666666666666666666666666665432 122344555555666666666666555544432211    11122


Q ss_pred             HhHHHHHHHHH-ccCChhHHHHHHHhcCC--CC--CCCcchhHHHHHHHHHhc-----------CChhhHHHHHHHHHHc
Q 010342          105 AAFANLVDSLC-REGYVNEVFRIAEDMPQ--GK--SVNEEFACGHMIDSLCRS-----------GRNHGASRVVYVMRKR  168 (512)
Q Consensus       105 ~~~~~l~~~~~-~~g~~~~a~~~~~~~~~--~~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~  168 (512)
                      ..+-..-+.|. +.+.+++++.+..+...  .+  .......|..+.-+|...           ....++++.+++..+.
T Consensus       394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~  473 (799)
T KOG4162|consen  394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF  473 (799)
T ss_pred             hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence            22323333333 34555555544444332  11  111222333333333211           1224456666666655


Q ss_pred             CCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHH
Q 010342          169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN  248 (512)
Q Consensus       169 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  248 (512)
                      +.. |+.+.-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... ...+.....
T Consensus       474 d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~  551 (799)
T KOG4162|consen  474 DPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMD  551 (799)
T ss_pred             CCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhch
Confidence            433 333333344445566677777777777766654566666666666666677777777776665432 111111112


Q ss_pred             HHHHHHHccCChhhHHHHHHHHHhc---------------------C-------CCCChhhHHHHHHHHHhcC---CHHH
Q 010342          249 IYLRALCLIKNPTELLNVLVFMLQT---------------------Q-------CQPDVITLNTVINGFCKMG---RIEE  297 (512)
Q Consensus       249 ~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~---~~~~  297 (512)
                      .-+..-...++.++++.....++..                     |       ..-...++..+.......+   ..+.
T Consensus       552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~  631 (799)
T KOG4162|consen  552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL  631 (799)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence            2222222344555444443332211                     0       0111122222222111111   1111


Q ss_pred             HHHHHHHHhhCCCCCCc------HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHH
Q 010342          298 ALKVLNDMVAGKFCAPD------AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK  371 (512)
Q Consensus       298 a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  371 (512)
                      .+..+   ....  .|+      ...|......+.+.+..++|...+.+.-.  -.+.....|......+...|...+|.
T Consensus       632 ~Lp~s---~~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~  704 (799)
T KOG4162|consen  632 KLPSS---TVLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAK  704 (799)
T ss_pred             ccCcc---cccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence            11111   1100  122      23455666778888899999877777432  22445566777777788899999999


Q ss_pred             HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH--HHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR--FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      ..|......+ |.++.+..++..++...|+..-|..  ++..+.+.+ +.+...|..+...+-+.|+.+.|.+.|+....
T Consensus       705 ~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  705 EAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            9999888764 4566689999999999998887777  999999887 77888999999999999999999999998876


Q ss_pred             C
Q 010342          450 S  450 (512)
Q Consensus       450 ~  450 (512)
                      .
T Consensus       783 L  783 (799)
T KOG4162|consen  783 L  783 (799)
T ss_pred             h
Confidence            5

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.30  E-value=7.5e-09  Score=81.26  Aligned_cols=209  Identities=14%  Similarity=0.057  Sum_probs=165.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG  360 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  360 (512)
                      ....+.-.|...|+...|..-+++..+..  +.+..++..+...|.+.|+.+.|.+.|++.+...  +-+-...|.....
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F  112 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence            34556677888999999999999988876  6777888888889999999999999998877554  4455677888888


Q ss_pred             HHccCCHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 010342          361 LFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE  439 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  439 (512)
                      +|..|.+++|...|++....- +.--..+|..+.-+..+.|+.+.|...+++.++.+ +....+.-.+.....+.|++-.
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence            888999999999998888742 22334578888888889999999999999988765 4555677888888899999999


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342          440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL  497 (512)
Q Consensus       440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  497 (512)
                      |..+++.....+. ++..+.-..|+.-.+.|+.+.+.++=..+.+  .-|.+..+-.+
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f  246 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF  246 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence            9999988877764 7888888888888889998888887777765  45666555443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=3.1e-07  Score=82.32  Aligned_cols=444  Identities=14%  Similarity=0.100  Sum_probs=252.2

Q ss_pred             ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH--HHHH--Hhc
Q 010342            2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL--VRGV--LRT   77 (512)
Q Consensus         2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--~~~~--~~~   77 (512)
                      +.+...|++++|.+....++..+ +.+..++..=+.++.+.++|++|+.+.+.-..      ..+++..  =.+|  .+.
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHc
Confidence            45678899999999999999886 33677888888899999999999966554332      1112222  2344  468


Q ss_pred             CChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCC-cchhHHHHHHHHHhcCChh
Q 010342           78 RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-EEFACGHMIDSLCRSGRNH  156 (512)
Q Consensus        78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  156 (512)
                      +..++|...+.-+ +        ..+..+...-.+.+-+.|++++|+.+|+.+.+.+... +...-..++.+-    -  
T Consensus        93 nk~Dealk~~~~~-~--------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a--  157 (652)
T KOG2376|consen   93 NKLDEALKTLKGL-D--------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----A--  157 (652)
T ss_pred             ccHHHHHHHHhcc-c--------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----H--
Confidence            8899887765411 1        1122344445677889999999999999997765421 111111122111    0  


Q ss_pred             hHHHHHHHHHHcCCCCCcchHHHHH---HHHhccCchhHHHHHHHHHHhCC-------CCC------ch-hhHHHHHHHH
Q 010342          157 GASRVVYVMRKRGLTPSLVSYNSIV---HGLCKHGGCMRAYQLLEEGIQFG-------YLP------SE-HTYKVLVEGL  219 (512)
Q Consensus       157 ~a~~~~~~~~~~g~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~  219 (512)
                       +... ..+......| ..+|..+.   ..+...|++.+|+++++...+.+       -.-      .. ..-..+..++
T Consensus       158 -~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl  234 (652)
T KOG2376|consen  158 -ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL  234 (652)
T ss_pred             -hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence             1111 1222222233 33444433   34567899999999999883221       011      11 1223445566


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHccCChh-hHHHHHHHHHhc-----------CCCCChhhHHH
Q 010342          220 CGESDLEKARKVLQFMLSKKDVDRTR---ICNIYLRALCLIKNPT-ELLNVLVFMLQT-----------QCQPDVITLNT  284 (512)
Q Consensus       220 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~~~~~  284 (512)
                      -..|+-++|..++..+........+.   +.|.++..-....-++ .++..++.....           .-.-....=+.
T Consensus       235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~  314 (652)
T KOG2376|consen  235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA  314 (652)
T ss_pred             HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999998765443321   1222222211111111 111111111100           00000111122


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh--hcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHH
Q 010342          285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL--NVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGL  361 (512)
Q Consensus       285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~  361 (512)
                      ++..|.  +..+.+.++-......   .|.. .+..++..+.  +...+..+..++.......  +-. .......+...
T Consensus       315 lL~l~t--nk~~q~r~~~a~lp~~---~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v~L~~aQl~  386 (652)
T KOG2376|consen  315 LLALFT--NKMDQVRELSASLPGM---SPES-LFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVVLLLRAQLK  386 (652)
T ss_pred             HHHHHh--hhHHHHHHHHHhCCcc---CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHHHHHHHHHH
Confidence            222222  3444454444443321   2333 3333333332  2235777888777643222  222 34455566777


Q ss_pred             HccCCHHHHHHHHH--------HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC--CCCCCHH----hHHHH
Q 010342          362 FRLRRVEEAKEVFN--------CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP--SNIHDNY----VYAAM  427 (512)
Q Consensus       362 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~----~~~~l  427 (512)
                      ...|+++.|.+++.        .+.+.+.  .+.+...+...+.+.++-+.|..++.+.+..  .-.+...    ++.-+
T Consensus       387 is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a  464 (652)
T KOG2376|consen  387 ISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA  464 (652)
T ss_pred             HhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence            88999999999998        5555443  3445666777788888777777777666421  0011112    33344


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM  482 (512)
Q Consensus       428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  482 (512)
                      +..-.+.|+.++|...++++.+.+ ++|..+...++.+|++. +++.|..+-+.+
T Consensus       465 a~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  465 AEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             hHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            444456799999999999999875 66888999999999865 577777776654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.28  E-value=7.5e-09  Score=81.25  Aligned_cols=195  Identities=11%  Similarity=0.010  Sum_probs=142.2

Q ss_pred             HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342          251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR  330 (512)
Q Consensus       251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (512)
                      ...|...|++..|..-+++.++..+. +..++..+...|.+.|..+.|.+-|++.....  +.+....|.....++..|+
T Consensus        42 al~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          42 ALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCC
Confidence            33444445555555555555444322 56677778888888888888888888888765  5667777777777888888


Q ss_pred             HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD  410 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  410 (512)
                      +++|...|.+.+......--..+|..+.-+..+.|+++.|...|++..+.. +..+.+...+.....+.|++-.|..+++
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            888888888877665555556678888877888888888888888888764 4455667777788888888888888888


Q ss_pred             HhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       411 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .....+ .++..++...|+.--..|+.+.+.+.=.++.+.
T Consensus       198 ~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         198 RYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            887666 477777777777777788887777766666554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=1.3e-08  Score=83.00  Aligned_cols=318  Identities=14%  Similarity=0.066  Sum_probs=184.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHH-
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN-  109 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-  109 (512)
                      -+.+.+..+.+..+++.|++++..-.++. +.+...++.+..+|....++..|-..++++-...|..       .-|.. 
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-------~qYrlY   83 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-------EQYRLY   83 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-------HHHHHH
Confidence            35666667777778888888887777653 2255667777778888888888877776665433332       22221 


Q ss_pred             HHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHH--HHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 010342          110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI--DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH  187 (512)
Q Consensus       110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  187 (512)
                      -.+.+-+.+.+..|+++...|.+..   ....-..-+  ......+++..+..+++.....|   +..+.+.......+.
T Consensus        84 ~AQSLY~A~i~ADALrV~~~~~D~~---~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke  157 (459)
T KOG4340|consen   84 QAQSLYKACIYADALRVAFLLLDNP---ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE  157 (459)
T ss_pred             HHHHHHHhcccHHHHHHHHHhcCCH---HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence            2455667788888888888776631   111111111  22345678888888887776432   445555555556678


Q ss_pred             CchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHH----HHHHHHHccCChhhH
Q 010342          188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN----IYLRALCLIKNPTEL  263 (512)
Q Consensus       188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a  263 (512)
                      |+++.|.+-|+...+.+.-.....|+..+ +..+.|+++.|.+...++.++|....+..--    ..+.+ ...|++.. 
T Consensus       158 gqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~-  234 (459)
T KOG4340|consen  158 GQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLV-  234 (459)
T ss_pred             ccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHH-
Confidence            89999999998888765444455676554 4456788889998888888776554332100    00000 00011000 


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc
Q 010342          264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP  343 (512)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  343 (512)
                            |-.++   -+..+|.-...+.+.|+++.|.+.+..|..+.....|+.|...+.-.-. .+++.+..+-+.-.+.
T Consensus       235 ------lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~  304 (459)
T KOG4340|consen  235 ------LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ  304 (459)
T ss_pred             ------HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh
Confidence                  00000   1223455555667777888888777777665544556666654432221 2223333333333233


Q ss_pred             cCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 010342          344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM  377 (512)
Q Consensus       344 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  377 (512)
                      ...+  -..||..++-.||+..-++.|-.++.+-
T Consensus       305 ~nPf--P~ETFANlLllyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  305 QNPF--PPETFANLLLLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             cCCC--ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence            3322  2347777777777777777777766543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.25  E-value=2.7e-08  Score=90.79  Aligned_cols=204  Identities=16%  Similarity=0.102  Sum_probs=107.9

Q ss_pred             HHHHHHHccCChhhHHHHHHHHHhc-----CC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010342          249 IYLRALCLIKNPTELLNVLVFMLQT-----QC-QP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI  321 (512)
Q Consensus       249 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  321 (512)
                      .+...|...+++++|..+|..+...     |. .| -..+++.|..+|.+.|++++|...++...+-             
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-------------  312 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-------------  312 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------
Confidence            3444555555555555555554432     11 11 2335566666788888887777777655421             


Q ss_pred             HHHHhhcCCHHHHHHHHHhhcccCCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCC----ChHhHHHHH
Q 010342          322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGI---GVVA----DSTTYAIVI  393 (512)
Q Consensus       322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~  393 (512)
                                      +.+.+  ....|.. ..++.+...|...++++.|..+++...+.   -..+    -..+++.|.
T Consensus       313 ----------------~~~~~--~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~  374 (508)
T KOG1840|consen  313 ----------------YEKLL--GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA  374 (508)
T ss_pred             ----------------HHHhh--ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence                            11100  0001111 12233444445555555555555444331   0111    134567777


Q ss_pred             HHHHhcCCHHHHHHHHHHhhcC----CC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CC-ChhhHH
Q 010342          394 DGLCESNQLDEAKRFWDDIVWP----SN---IHDNYVYAAMIKGLCRSGKIHEAVHFLYELV----DSGV-TP-NIVCYN  460 (512)
Q Consensus       394 ~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~p-~~~~~~  460 (512)
                      ..|...|++++|.+++++++..    +.   .-....++.|...|.+.+++.+|.++|.+..    ..|+ .| ...+|.
T Consensus       375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~  454 (508)
T KOG1840|consen  375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL  454 (508)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence            7777777777777777766521    11   1123356667777777777777776665533    2222 12 235567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 010342          461 VVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       461 ~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      .|...|.+.|+++.|.++.+...
T Consensus       455 nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  455 NLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHH
Confidence            77777777888887777766654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=2.4e-06  Score=81.67  Aligned_cols=445  Identities=12%  Similarity=0.110  Sum_probs=240.3

Q ss_pred             cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----------CCCCChhhHHHHHHH
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-----------GVLPNSLTYSVLVRG   73 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~~~~~l~~~   73 (512)
                      ...-.++++.+.+..|...+++.|....--+..-|...=-.+...++|+..+..           ++.-|+......|.+
T Consensus       654 Fg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqA  733 (1666)
T KOG0985|consen  654 FGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQA  733 (1666)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHH
Confidence            344567888889999998888888777777777777666667778888876442           245677777888999


Q ss_pred             HHhcCChhhHHHHHHH-----------HHHHhhhcCCCCc----chHhHHH-HHHHHHccCChhHHHHHH-HhcCCCCCC
Q 010342           74 VLRTRDVERANVLMFK-----------LWERMKEEEDLSV----NNAAFAN-LVDSLCREGYVNEVFRIA-EDMPQGKSV  136 (512)
Q Consensus        74 ~~~~~~~~~a~~~~~~-----------~~~~~~~~~~~~~----~~~~~~~-l~~~~~~~g~~~~a~~~~-~~~~~~~~~  136 (512)
                      .++.|++.+.+++.++           +++..+-.+....    +...|-. |+-.+-+. +..+-+++| +++-... .
T Consensus       734 A~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrn-n~~kyIE~yVQkvNps~-~  811 (1666)
T KOG0985|consen  734 ACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN-NLQKYIEIYVQKVNPSR-T  811 (1666)
T ss_pred             HHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHh-hHHHHHHHHHhhcCCcc-c
Confidence            9999998888765422           1111111111100    0011111 22112222 222222222 1111110 0


Q ss_pred             C-----------cc-hhH------------HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCch-h
Q 010342          137 N-----------EE-FAC------------GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC-M  191 (512)
Q Consensus       137 ~-----------~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~-~  191 (512)
                      |           +. ..-            .-|+.-..+.++..--...++...+.|.. +..++|.|.+.|...++- +
T Consensus       812 p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE  890 (1666)
T KOG0985|consen  812 PQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPE  890 (1666)
T ss_pred             chhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChH
Confidence            1           00 011            11233344555555566677777777776 888888888887765432 2


Q ss_pred             HHHH---HHHHH------HhC-----------C--------CCCchhhHHHHHHHHhccCCH---HHH--------HHHH
Q 010342          192 RAYQ---LLEEG------IQF-----------G--------YLPSEHTYKVLVEGLCGESDL---EKA--------RKVL  232 (512)
Q Consensus       192 ~a~~---~~~~~------~~~-----------~--------~~~~~~~~~~l~~~~~~~g~~---~~a--------~~~~  232 (512)
                      .-++   .|+..      .+.           |        +......|....+...+..|.   .+.        ..+.
T Consensus       891 ~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLi  970 (1666)
T KOG0985|consen  891 RFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLI  970 (1666)
T ss_pred             HhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHH
Confidence            1110   11100      000           0        000112233333333333332   122        2455


Q ss_pred             HHHHhCCCC--CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCC--CCChhhHH-------------------------
Q 010342          233 QFMLSKKDV--DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC--QPDVITLN-------------------------  283 (512)
Q Consensus       233 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~-------------------------  283 (512)
                      ++..+...+  .++......++++...+-+.+.+++++++.-..-  ..+...-+                         
T Consensus       971 DqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD 1050 (1666)
T KOG0985|consen  971 DQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD 1050 (1666)
T ss_pred             HHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC
Confidence            555444333  2345566667777777777777777766542211  00000001                         


Q ss_pred             --HHHHHHHhcCCHHHHHHHHHHHhhCC--------------------CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342          284 --TVINGFCKMGRIEEALKVLNDMVAGK--------------------FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV  341 (512)
Q Consensus       284 --~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  341 (512)
                        .+...+...+-+++|..+|+......                    .....+..|+.+..+-.+.|...+|++-|-+ 
T Consensus      1051 a~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik- 1129 (1666)
T KOG0985|consen 1051 APDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK- 1129 (1666)
T ss_pred             chhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh-
Confidence              11222334455666766666532100                    0023456788888888889999999887754 


Q ss_pred             cccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH
Q 010342          342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN  421 (512)
Q Consensus       342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  421 (512)
                            ..|+..|..++....+.|.+++-.+.+....+..-.|..  -..|+-+|++.+++.+.++++.       .||.
T Consensus      1130 ------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~ 1194 (1666)
T KOG0985|consen 1130 ------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNV 1194 (1666)
T ss_pred             ------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCc
Confidence                  237778999999999999999999988877776544444  4567888888888777666543       3455


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342          422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ  477 (512)
Q Consensus       422 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  477 (512)
                      .-...+.+-|...|.++.|.-++.         +...|..|...+...|+++.|..
T Consensus      1195 A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred             hhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555544442         22234444455555555544443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.23  E-value=1.6e-08  Score=88.32  Aligned_cols=204  Identities=14%  Similarity=-0.003  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010342          280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR  359 (512)
Q Consensus       280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  359 (512)
                      ..|..+...+...|+.++|...|++..+..  +.+...|..+...+...|++++|...|++.++..  +.+...+..+..
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~  140 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGI  140 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            345566666777777777777777777655  5566777777777777777777777777765332  223455666666


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 010342          360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE  439 (512)
Q Consensus       360 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  439 (512)
                      ++...|++++|...++...+..  |+..........+...++.++|...+++..... .++...+ .  ......|+..+
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~  214 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISE  214 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCH
Confidence            6777777777777777777643  332211111222344566777777776554322 2222111 1  22223444433


Q ss_pred             HHHHHHHHHHC---CC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 010342          440 AVHFLYELVDS---GV--T-PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR  495 (512)
Q Consensus       440 a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  495 (512)
                      + +.+..+.+.   .+  . .....|..+...+.+.|++++|...|++....+ +||.+.++
T Consensus       215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~  274 (296)
T PRK11189        215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR  274 (296)
T ss_pred             H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence            3 233333321   11  1 123467777777788888888888888877643 34554444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.22  E-value=1.2e-08  Score=93.05  Aligned_cols=166  Identities=12%  Similarity=0.049  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHH-----cCC-CCCcc-hHHHHHHHHhccCchhHHHHHHHHHHhC---CCCC---
Q 010342          141 ACGHMIDSLCRSGRNHGASRVVYVMRK-----RGL-TPSLV-SYNSIVHGLCKHGGCMRAYQLLEEGIQF---GYLP---  207 (512)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~---  207 (512)
                      +++.|...|.+.|++++|...++...+     .|. .|.+. .++.+...+...+++++|..+++...+.   -+.+   
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~  364 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV  364 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence            344444455555555555544443321     111 11221 3455566667777777777777765432   1111   


Q ss_pred             -chhhHHHHHHHHhccCCHHHHHHHHHHHHhCC----C---CCCcccHHHHHHHHHccCChhhHHHHHHHHHh----cCC
Q 010342          208 -SEHTYKVLVEGLCGESDLEKARKVLQFMLSKK----D---VDRTRICNIYLRALCLIKNPTELLNVLVFMLQ----TQC  275 (512)
Q Consensus       208 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~  275 (512)
                       -..+++.|...|...|++++|.++++.+....    .   ......++.+...|.+.+++.+|..+|.+...    .|+
T Consensus       365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~  444 (508)
T KOG1840|consen  365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP  444 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence             23567788888888888888888887775432    1   11122445555555555555555555544322    121


Q ss_pred             --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010342          276 --QPDVITLNTVINGFCKMGRIEEALKVLNDMV  306 (512)
Q Consensus       276 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  306 (512)
                        +-...+|..|...|.+.|+++.|.++.+.+.
T Consensus       445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence              1123455566666666666666666655544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.16  E-value=3.2e-09  Score=91.13  Aligned_cols=180  Identities=15%  Similarity=0.173  Sum_probs=102.5

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010342          293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE  372 (512)
Q Consensus       293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  372 (512)
                      ++.+.++.-+++.........+..........+...|++++|++++.+.       .+.......+..|.+.++++.|.+
T Consensus        80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k  152 (290)
T PF04733_consen   80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEK  152 (290)
T ss_dssp             TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHH
Confidence            3444454444443333221223333333334556677777777655431       345555666777777777777777


Q ss_pred             HHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          373 VFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      .++.|.+.+   +..+...+..++..    .+.+.+|..+|+++.+. ..++..+.+.++.++...|++++|.+++.+..
T Consensus       153 ~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al  228 (290)
T PF04733_consen  153 ELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL  228 (290)
T ss_dssp             HHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred             HHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            777777642   22333334443332    23577777777776654 35667777777777777777777777777776


Q ss_pred             HCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 010342          449 DSGVTPNIVCYNVVIDGACKLSMK-REAYQILREMRK  484 (512)
Q Consensus       449 ~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~  484 (512)
                      ..+.. ++.++..++.+....|+. +.+.+++.++..
T Consensus       229 ~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  229 EKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             CC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            55422 556666666666666766 556677777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.16  E-value=3.7e-07  Score=83.22  Aligned_cols=202  Identities=13%  Similarity=0.102  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh--hhHHHHH
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAVL  358 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~  358 (512)
                      ....+...+...|++++|...+++..+..  +.+...+..+...+...|++++|...+.+.+......|+.  ..|..+.
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la  193 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA  193 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence            33445566777788888888888887765  4556667777777888888888888887765443222332  2344566


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCC-CCChHhH-H--HHHHHHHhcCCHHHHHHH---HHHhhcC-CCCCCHHhHHHHHHH
Q 010342          359 RGLFRLRRVEEAKEVFNCMLGIGV-VADSTTY-A--IVIDGLCESNQLDEAKRF---WDDIVWP-SNIHDNYVYAAMIKG  430 (512)
Q Consensus       359 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~~-~~~~~~~~~~~l~~~  430 (512)
                      ..+...|++++|..++++...... .+..... +  .++..+...|....+.+.   ....... ..............+
T Consensus       194 ~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~  273 (355)
T cd05804         194 LFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALA  273 (355)
T ss_pred             HHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence            777788888888888888754321 1111111 1  223333334432222222   1111111 001111222356667


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCC------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          431 LCRSGKIHEAVHFLYELVDSGVT------P--NIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       431 ~~~~g~~~~a~~~~~~~~~~~~~------p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      +...|+.++|...++.+......      .  ..........++...|++++|.+.+.....
T Consensus       274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77888999999998887653211      0  122223334555688999999998888764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.16  E-value=7.5e-08  Score=84.20  Aligned_cols=189  Identities=11%  Similarity=-0.029  Sum_probs=96.1

Q ss_pred             HHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCH
Q 010342          252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI  331 (512)
Q Consensus       252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  331 (512)
                      ..+...|+.++|...|....+..+ .+...|+.+...+...|++++|...|++..+..  +.+..++..+..++...|++
T Consensus        72 ~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~  148 (296)
T PRK11189         72 VLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIALYYGGRY  148 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCH
Confidence            333334444444444444433332 245566666666667777777777776666544  34455666666666666777


Q ss_pred             HHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD  411 (512)
Q Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  411 (512)
                      ++|.+.+++.+...   |+..........+...++.++|...+.+..... .|+... ..+.  ....|+...+ ..++.
T Consensus       149 ~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~--~~~lg~~~~~-~~~~~  220 (296)
T PRK11189        149 ELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIV--EFYLGKISEE-TLMER  220 (296)
T ss_pred             HHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHH--HHHccCCCHH-HHHHH
Confidence            77777666655332   222111111122334556677777765544321 222211 1222  2223444332 23333


Q ss_pred             hhc---CCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          412 IVW---PSN---IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       412 ~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      +.+   ...   +.....|..+...+...|++++|...|++..+.+
T Consensus       221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            321   110   1123467777777777777777777777777654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=4.7e-06  Score=79.74  Aligned_cols=395  Identities=11%  Similarity=0.089  Sum_probs=264.7

Q ss_pred             HHHHHHHhCCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 010342           15 KLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG--VLPNSLTYSVLVRGVLRTRDVERANVLMFKL   90 (512)
Q Consensus        15 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   90 (512)
                      ++.++..+.+++  .|+........++...+-+.+..++++++.-..  +.-+...-+.++-...+ -+..+..+...++
T Consensus       968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL 1046 (1666)
T KOG0985|consen  968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL 1046 (1666)
T ss_pred             HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh
Confidence            344444444332  256667788889999999999999999987532  11122223333333333 2334443333222


Q ss_pred             HHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 010342           91 WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL  170 (512)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~  170 (512)
                          ..-  -.|+      +.......+-+++|+.+|+....     +..+.+.|+.   .-+..+.|.+.-+...    
T Consensus      1047 ----dny--Da~~------ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n---- 1102 (1666)
T KOG0985|consen 1047 ----DNY--DAPD------IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN---- 1102 (1666)
T ss_pred             ----ccC--Cchh------HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC----
Confidence                111  1222      67778888889999999988653     2334444443   3466677766655543    


Q ss_pred             CCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 010342          171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY  250 (512)
Q Consensus       171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  250 (512)
                        .+..|..+..+-.+.|...+|.+-|-+      ..|+..|..+++...+.|.+++-.+++....++...|  ..=..+
T Consensus      1103 --~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eL 1172 (1666)
T KOG0985|consen 1103 --EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSEL 1172 (1666)
T ss_pred             --ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHH
Confidence              457899999999999999998887754      3567789999999999999999999998777654443  344678


Q ss_pred             HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342          251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR  330 (512)
Q Consensus       251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (512)
                      +-+|++.++..+...++.       -|+......+.+-|...|.++.|.-+|....          -|..+...+...|+
T Consensus      1173 i~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGE 1235 (1666)
T ss_pred             HHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHH
Confidence            888999998887776653       5788888888999999999999988886543          47778888889999


Q ss_pred             HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD  410 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  410 (512)
                      +..|.+.-++       ..+..+|..+-.+|...+.+.-|     +|...++.....-...++..|...|-+++...+++
T Consensus      1236 yQ~AVD~aRK-------Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1236 YQGAVDAARK-------ANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred             HHHHHHHhhh-------ccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence            9999886655       23677999888888877766544     45555555566677889999999999999999998


Q ss_pred             HhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHhcCCHHHH
Q 010342          411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVT------PNIVCYNVVIDGACKLSMKREA  475 (512)
Q Consensus       411 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~a  475 (512)
                      ...-.. ......|+-|.-.|.+- ++++..+.++-+-.+ +++      -....|+-++-.|.+-..++.|
T Consensus      1304 a~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1304 AGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred             hhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            775332 33455777777777654 344444433322211 110      0223466666666665555554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=2.7e-07  Score=75.47  Aligned_cols=190  Identities=16%  Similarity=0.140  Sum_probs=132.2

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChhh
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV-LVRGVLRTRDVER   82 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~   82 (512)
                      +++..++++|++++....++.++ +....+.|..+|-...++..|-..++.+...  .|...-|.. -...+.+.+.+..
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHH
Confidence            36677899999999998888444 7778899999999999999999999999875  355544433 2345667788888


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHH
Q 010342           83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV  162 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (512)
                      |.++...+.+    .+.  ........-....-..+++..+..+.++....+   +..+.+...-...+.|+++.|.+-|
T Consensus        97 ALrV~~~~~D----~~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF  167 (459)
T KOG4340|consen   97 ALRVAFLLLD----NPA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF  167 (459)
T ss_pred             HHHHHHHhcC----CHH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence            8776544422    111  111111111223346788999999999887543   2333333444556889999999999


Q ss_pred             HHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCC
Q 010342          163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL  206 (512)
Q Consensus       163 ~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  206 (512)
                      ....+-|--.....|+..+. ..+.++++.|++...++++.|++
T Consensus       168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence            99887543335677876654 44678999999999999888754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.3e-06  Score=77.65  Aligned_cols=219  Identities=12%  Similarity=0.097  Sum_probs=100.9

Q ss_pred             HHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHH-------
Q 010342          248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT-------  320 (512)
Q Consensus       248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------  320 (512)
                      ..+.....+..+++.+.+-+....+..  .+..-++....+|...|.+..+...-+...+.+  ......|+.       
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g--re~rad~klIak~~~r  303 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG--RELRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh--HHHHHHHHHHHHHHHH
Confidence            345555566666777777776666654  355555666666777777666666655555444  222222322       


Q ss_pred             HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-HhHHHHHHHHHhc
Q 010342          321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCES  399 (512)
Q Consensus       321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~  399 (512)
                      +..++.+.++++.++..|.+.+.... .|+..         .+....+++....+...-.+  |.. .-...=...+.+.
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~R-t~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~  371 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHR-TPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKK  371 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhc-CHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhc
Confidence            23345556677777777776553321 22211         11122222222222222211  111 0111113334444


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010342          400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL  479 (512)
Q Consensus       400 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  479 (512)
                      |++..|...|.++++.. +.|...|..-.-+|.+.|.+..|+.-.+..++.+ ++....|.-=..++....+|++|.+.|
T Consensus       372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay  449 (539)
T KOG0548|consen  372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAY  449 (539)
T ss_pred             cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555554443 3444445555555555555555544444444432 112222333333333344444555554


Q ss_pred             HHHHH
Q 010342          480 REMRK  484 (512)
Q Consensus       480 ~~m~~  484 (512)
                      ++.++
T Consensus       450 ~eale  454 (539)
T KOG0548|consen  450 QEALE  454 (539)
T ss_pred             HHHHh
Confidence            44444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.11  E-value=8.6e-07  Score=80.82  Aligned_cols=201  Identities=12%  Similarity=0.009  Sum_probs=123.2

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChh-hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342           29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPNSL-TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA  106 (512)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (512)
                      .-.|..+...+...|+.+.+...+.+..+... .++.. ........+...|++++|...+.++++..|..      ...
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~------~~a   79 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD------LLA   79 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHH
Confidence            44566666777777778777776666654321 11221 12222334556788888888888777654432      122


Q ss_pred             HH---HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 010342          107 FA---NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG  183 (512)
Q Consensus       107 ~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~  183 (512)
                      +.   .+.......+..+.+.+.+...... .+........+...+...|++++|.+.++...+.... +...+..+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i  157 (355)
T cd05804          80 LKLHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHV  157 (355)
T ss_pred             HHHhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence            22   1111112345555666665552211 1122233344556778889999999999888886432 45677778888


Q ss_pred             HhccCchhHHHHHHHHHHhCCC-CCch--hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010342          184 LCKHGGCMRAYQLLEEGIQFGY-LPSE--HTYKVLVEGLCGESDLEKARKVLQFMLS  237 (512)
Q Consensus       184 ~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~  237 (512)
                      +...|++++|...+++...... .|+.  ..|..+...+...|++++|..+++....
T Consensus       158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            8888999999998888776432 1222  2455677788888999999999988753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.10  E-value=3.4e-06  Score=70.68  Aligned_cols=329  Identities=12%  Similarity=0.057  Sum_probs=191.9

Q ss_pred             ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH---HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010342           28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL---VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN  104 (512)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  104 (512)
                      ++.--.-+...+...|++..|+.-|....+-    |+..|..+   ...|...|+...|..-+.++++.       .|+.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-------KpDF  105 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-------KPDF  105 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-------CccH
Confidence            3444555677777888888888888887763    44444444   45677788888887766666643       3332


Q ss_pred             H-hHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 010342          105 A-AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG  183 (512)
Q Consensus       105 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~  183 (512)
                      . .-..-...+.+.|.+++|..=|+.+.+..+...               ...++.+-+..+.+.      ......+..
T Consensus       106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~---------------~~~eaqskl~~~~e~------~~l~~ql~s  164 (504)
T KOG0624|consen  106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG---------------LVLEAQSKLALIQEH------WVLVQQLKS  164 (504)
T ss_pred             HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc---------------hhHHHHHHHHhHHHH------HHHHHHHHH
Confidence            1 111123456677777777777777666543211               111111111111110      112233445


Q ss_pred             HhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhH
Q 010342          184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL  263 (512)
Q Consensus       184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  263 (512)
                      +.-.|+...|++....+++.. +.|...+..-..+|...|++..|..=++..... ...++..+..+-..+...|+.+.+
T Consensus       165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~s  242 (504)
T KOG0624|consen  165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENS  242 (504)
T ss_pred             HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHH
Confidence            556778888888888777653 457777777778888888888887777666532 333445555566666677777777


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc
Q 010342          264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP  343 (512)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  343 (512)
                      +..+++.++.+  ||...+-.      .-..+.+..+.++.|.                 .....+++.++++..+..|+
T Consensus       243 L~~iRECLKld--pdHK~Cf~------~YKklkKv~K~les~e-----------------~~ie~~~~t~cle~ge~vlk  297 (504)
T KOG0624|consen  243 LKEIRECLKLD--PDHKLCFP------FYKKLKKVVKSLESAE-----------------QAIEEKHWTECLEAGEKVLK  297 (504)
T ss_pred             HHHHHHHHccC--cchhhHHH------HHHHHHHHHHHHHHHH-----------------HHHhhhhHHHHHHHHHHHHh
Confidence            77776666542  33322111      1111222222222222                 23345566666666666664


Q ss_pred             cCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342          344 QRGYSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS  416 (512)
Q Consensus       344 ~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  416 (512)
                      ...-.+  ....+..+-.++...+++.+|++.-.+.+... +.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus       298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            432111  12233445556666788888888888887743 4447778777888888888888888888887654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.10  E-value=6.2e-06  Score=77.25  Aligned_cols=209  Identities=15%  Similarity=0.050  Sum_probs=111.7

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC-C-------C-CCChhhHHHHHHH
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-G-------V-LPNSLTYSVLVRG   73 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-------~-~~~~~~~~~l~~~   73 (512)
                      .|.-.|+.+.|.+..+.+.      +...|..+.+.|.+.++.+-|.-.+..|... |       . .|+ .+-..+.-.
T Consensus       737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL  809 (1416)
T KOG3617|consen  737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL  809 (1416)
T ss_pred             EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence            4667899999998887665      3568999999999999999888777776432 1       1 122 222222333


Q ss_pred             HHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcC
Q 010342           74 VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG  153 (512)
Q Consensus        74 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  153 (512)
                      ....|..++|+.+|.+.-+              |..|=+.|-..|.+++|+++.+.-..-..   ..+|......+...+
T Consensus       810 AieLgMlEeA~~lYr~ckR--------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~  872 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKR--------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARR  872 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhc
Confidence            4456777777776655422              12233445555666666665544222211   233444444444445


Q ss_pred             ChhhHHHHHHHH----------HHcC---------CCCCcchHHHHHHHHhccCchhHHHHHHHHHHhC----------C
Q 010342          154 RNHGASRVVYVM----------RKRG---------LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----------G  204 (512)
Q Consensus       154 ~~~~a~~~~~~~----------~~~g---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~  204 (512)
                      +.+.|++.|++.          ....         -..+...|.....-+-..|+.+.|+.+|..+.+.          |
T Consensus       873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qG  952 (1416)
T KOG3617|consen  873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQG  952 (1416)
T ss_pred             cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeecc
Confidence            555555444331          1110         0112333333444444455555555555543321          0


Q ss_pred             ----------CCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010342          205 ----------YLPSEHTYKVLVEGLCGESDLEKARKVLQFM  235 (512)
Q Consensus       205 ----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  235 (512)
                                -.-|....-.+.+.|-..|++.+|..+|.+.
T Consensus       953 k~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  953 KTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             CchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                      0123334445666676777777777666554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.6e-06  Score=77.02  Aligned_cols=103  Identities=19%  Similarity=0.146  Sum_probs=80.2

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS-LTYSVLVRGVLRTRDVE   81 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~   81 (512)
                      +.+..|+++.|+..|-+.+...+. |-..|..=..+|++.|++.+|++=-.+-.+.  .|+- ..|+....+..-.|+++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence            567889999999999999988554 7778999999999999999998877666654  5665 46999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHH
Q 010342           82 RANVLMFKLWERMKEEEDLSVNNAAFANLVDSL  114 (512)
Q Consensus        82 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  114 (512)
                      +|...|.+-++..+.      +...++.+.+++
T Consensus        88 eA~~ay~~GL~~d~~------n~~L~~gl~~a~  114 (539)
T KOG0548|consen   88 EAILAYSEGLEKDPS------NKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHHHhhcCCc------hHHHHHhHHHhh
Confidence            999988777654332      233444455555

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.05  E-value=4.3e-06  Score=86.50  Aligned_cols=372  Identities=12%  Similarity=0.004  Sum_probs=220.0

Q ss_pred             HHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchh
Q 010342          112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM  191 (512)
Q Consensus       112 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~  191 (512)
                      ..+...|++.+|............  -..............|+++.+..++..+.......+..........+...|+++
T Consensus       349 ~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~  426 (903)
T PRK04841        349 EAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS  426 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence            344455566555554444332110  001111122334456777776666665532211112333334444556788999


Q ss_pred             HHHHHHHHHHhCCC------CCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHccCC
Q 010342          192 RAYQLLEEGIQFGY------LPS--EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT----RICNIYLRALCLIKN  259 (512)
Q Consensus       192 ~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~  259 (512)
                      ++...+..+...--      .+.  ......+...+...|+++.|...++.........+.    .....+...+...|+
T Consensus       427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~  506 (903)
T PRK04841        427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE  506 (903)
T ss_pred             HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence            99988887754310      111  112223334556789999999999987653211111    233455566778999


Q ss_pred             hhhHHHHHHHHHhcCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CC-cHHHHHHHHHHHhhc
Q 010342          260 PTELLNVLVFMLQTQCQ---P--DVITLNTVINGFCKMGRIEEALKVLNDMVAG----KFC-AP-DAVTFTTIIFGLLNV  328 (512)
Q Consensus       260 ~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~~l~~~~~~~  328 (512)
                      +++|...+.........   +  ....+..+...+...|+++.|...+++....    +.. .+ ....+..+...+...
T Consensus       507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  586 (903)
T PRK04841        507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW  586 (903)
T ss_pred             HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence            99999988887643211   1  1234455667788899999999988876542    110 01 223344556667778


Q ss_pred             CCHHHHHHHHHhhcccCC-CCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChHhH-----HHHHHHHHhc
Q 010342          329 GRIQEALNLLYQVMPQRG-YSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTY-----AIVIDGLCES  399 (512)
Q Consensus       329 ~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~  399 (512)
                      |++++|...+.+.+.... ..+  ....+..+...+...|+++.|...++......... ....+     ...+..+...
T Consensus       587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (903)
T PRK04841        587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT  666 (903)
T ss_pred             cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence            999999998877543211 112  23334445667778999999999988875421011 11111     1122444567


Q ss_pred             CCHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCC
Q 010342          400 NQLDEAKRFWDDIVWPSNIHD---NYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTP-NIVCYNVVIDGACKLSM  471 (512)
Q Consensus       400 g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~  471 (512)
                      |+.+.|...+...........   ...+..+..++...|+.++|...+++....    |..+ ...+...+..++.+.|+
T Consensus       667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~  746 (903)
T PRK04841        667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR  746 (903)
T ss_pred             CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence            899999999877654221111   112456777888899999999999887653    3222 23456677788889999


Q ss_pred             HHHHHHHHHHHHHC
Q 010342          472 KREAYQILREMRKN  485 (512)
Q Consensus       472 ~~~a~~~~~~m~~~  485 (512)
                      .++|.+.+.+..+.
T Consensus       747 ~~~A~~~L~~Al~l  760 (903)
T PRK04841        747 KSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.04  E-value=3.5e-08  Score=84.82  Aligned_cols=249  Identities=14%  Similarity=0.050  Sum_probs=142.2

Q ss_pred             HhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhH
Q 010342          184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL  263 (512)
Q Consensus       184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  263 (512)
                      +.-.|++..++.-.+ ........+......+.+++...|+++.+.   ..+.. +..|.......+...+...++.+.+
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~-~~~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK-SSSPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T-TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc-CCChhHHHHHHHHHHHhCccchHHH
Confidence            334566665554443 222111122334444556666666655432   23322 2234444444444444333444445


Q ss_pred             HHHHHHHHhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhc
Q 010342          264 LNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM  342 (512)
Q Consensus       264 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  342 (512)
                      ..-+......... .+..........+...|++++|++++...       .+.......+..+.+.++++.|.+.+..+-
T Consensus        86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444443333222 22222223334556678888888887542       355666777888888888888888887743


Q ss_pred             ccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 010342          343 PQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI  418 (512)
Q Consensus       343 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  418 (512)
                       +.  ..| .+...+..++..    ...+.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++.+....+ +
T Consensus       159 -~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~  232 (290)
T PF04733_consen  159 -QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P  232 (290)
T ss_dssp             -CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred             -hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence             32  233 344445444432    34688899999998764 46788888888888889999999999998887665 5


Q ss_pred             CCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 010342          419 HDNYVYAAMIKGLCRSGKI-HEAVHFLYELVDS  450 (512)
Q Consensus       419 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~  450 (512)
                      .+..++..++.+....|+. +.+.+.+.++...
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            5666777777777777776 6677788887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.00  E-value=4e-06  Score=80.09  Aligned_cols=458  Identities=10%  Similarity=-0.014  Sum_probs=270.7

Q ss_pred             cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 010342            9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMF   88 (512)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   88 (512)
                      +...|...|=+..+..+. =...|..|.+.|....+...|...|++..+.+ .-|...+......|++..+++.|..+..
T Consensus       473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            355666666666665322 24479999999998888899999999998764 3466778888899999999999988743


Q ss_pred             HHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010342           89 KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR  168 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  168 (512)
                      ..-+..    ....-...+-...-.|...++...|+.-|+......+ .|...|..+..+|...|++..|.++|.+....
T Consensus       551 ~~~qka----~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L  625 (1238)
T KOG1127|consen  551 RAAQKA----PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL  625 (1238)
T ss_pred             HHhhhc----hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence            322211    1111112222355567788899999999988877665 67788999999999999999999999888765


Q ss_pred             CCCCCcchHHHH--HHHHhccCchhHHHHHHHHHHhCC------CCCchhhHHHHHHHHhccCCHHHHHHHHHHH-----
Q 010342          169 GLTPSLVSYNSI--VHGLCKHGGCMRAYQLLEEGIQFG------YLPSEHTYKVLVEGLCGESDLEKARKVLQFM-----  235 (512)
Q Consensus       169 g~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----  235 (512)
                        .|+ .+|...  ...-+..|.+.+++..+.......      ..--..++..+...+...|-...+..+++.-     
T Consensus       626 --rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~  702 (1238)
T KOG1127|consen  626 --RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI  702 (1238)
T ss_pred             --CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence              332 233322  223346788899888888765431      1111223333333333333333333333332     


Q ss_pred             --HhCCCCCCcccHHHHHHHHH---ccC-C-h-hhHHHHHHH-HHhcCCC--------------------CChhhHHHHH
Q 010342          236 --LSKKDVDRTRICNIYLRALC---LIK-N-P-TELLNVLVF-MLQTQCQ--------------------PDVITLNTVI  286 (512)
Q Consensus       236 --~~~~~~~~~~~~~~l~~~~~---~~~-~-~-~~a~~~~~~-~~~~~~~--------------------~~~~~~~~l~  286 (512)
                        .......+...|..+..++.   ... + + .....++.. ....+.-                    .+..+|..++
T Consensus       703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG  782 (1238)
T KOG1127|consen  703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG  782 (1238)
T ss_pred             HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence              22221112112221111111   111 0 0 000111111 1111111                    1233343443


Q ss_pred             HHHHh----c----CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342          287 NGFCK----M----GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL  358 (512)
Q Consensus       287 ~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  358 (512)
                      ..|.+    .    .+...|+..+.+..+..  ..+..+|+.|.-. ...|.+.-|.--|-+..  ...+....+|..+.
T Consensus       783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~--~sep~~~~~W~Nlg  857 (1238)
T KOG1127|consen  783 INYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSR--FSEPTCHCQWLNLG  857 (1238)
T ss_pred             HHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhh--hccccchhheeccc
Confidence            33333    1    23346777777776654  5677778877655 55567776666664432  22245667788888


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHh----hcCCCCCCHHhHHHHHHHHHhc
Q 010342          359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRS  434 (512)
Q Consensus       359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~  434 (512)
                      -.+....+++.|...|...+... |.+...|-.....-...|+.-++..+|..-    ...|-.++..-|-.........
T Consensus       858 vL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N  936 (1238)
T KOG1127|consen  858 VLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN  936 (1238)
T ss_pred             eeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence            88889999999999999988764 556666666555566778877888777662    1233344444444444445556


Q ss_pred             CCHHHHHHHHHHH----------HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          435 GKIHEAVHFLYEL----------VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       435 g~~~~a~~~~~~~----------~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      |+.++-+...+++          .. +.+-....|.+.....-+.+.+..|.+...++.
T Consensus       937 g~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  937 GNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             cchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            6665544433332          22 223355677777777788888888888877754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.99  E-value=7.8e-07  Score=91.94  Aligned_cols=269  Identities=14%  Similarity=0.034  Sum_probs=125.9

Q ss_pred             HHHHhcCChhhHHHHHHHHHHcCCCCCc----chHHHHHHHHhccCchhHHHHHHHHHHhC----CC-CCchhhHHHHHH
Q 010342          147 DSLCRSGRNHGASRVVYVMRKRGLTPSL----VSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GY-LPSEHTYKVLVE  217 (512)
Q Consensus       147 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~  217 (512)
                      ..+...|++++|...++.....-...+.    ...+.+...+...|++++|...+++....    |. .....++..+..
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            3344566666666666655442111111    12334444555566666666666655432    10 011223344455


Q ss_pred             HHhccCCHHHHHHHHHHHHhC----CCCC---CcccHHHHHHHHHccCChhhHHHHHHHHHhc----CCCCChhhHHHHH
Q 010342          218 GLCGESDLEKARKVLQFMLSK----KDVD---RTRICNIYLRALCLIKNPTELLNVLVFMLQT----QCQPDVITLNTVI  286 (512)
Q Consensus       218 ~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~  286 (512)
                      .+...|+++.|...+++....    +...   ....+..+...+...|++++|...+......    +.......+..+.
T Consensus       540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  619 (903)
T PRK04841        540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA  619 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence            556666666666665554331    1111   1112333344455556666666666554432    1111122333344


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhC---CCCCCcHHHH--HHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC--hhhHHHHHH
Q 010342          287 NGFCKMGRIEEALKVLNDMVAG---KFCAPDAVTF--TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG--IVTYNAVLR  359 (512)
Q Consensus       287 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~  359 (512)
                      ..+...|+++.|...++.....   ..........  ...+..+...|+.+.|..++..........+.  ...+..+..
T Consensus       620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~  699 (903)
T PRK04841        620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR  699 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence            5556667777776666665331   1000000010  11223344466666666666553321110110  011234555


Q ss_pred             HHHccCCHHHHHHHHHHHHhC----CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342          360 GLFRLRRVEEAKEVFNCMLGI----GVVAD-STTYAIVIDGLCESNQLDEAKRFWDDIVWP  415 (512)
Q Consensus       360 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  415 (512)
                      ++...|+.++|...+++....    |...+ ..+...+..++...|+.++|...+.+..+.
T Consensus       700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            566667777777666665542    22211 224455556666777777777777666543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.97  E-value=4.6e-06  Score=69.94  Aligned_cols=309  Identities=13%  Similarity=0.091  Sum_probs=191.8

Q ss_pred             HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHH---HHHHHhcCChhhHHHHHHHHHHcCCCCCcch-HHHHHHHH
Q 010342          109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM---IDSLCRSGRNHGASRVVYVMRKRGLTPSLVS-YNSIVHGL  184 (512)
Q Consensus       109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~-~~~l~~~~  184 (512)
                      .+.+.+...|++..|+.-|....+.+    +..|.++   ...|...|+...|+.-+....+.  +||-.. -..-...+
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~d----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGD----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCC----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence            36666777777777777666665533    2333333   34566666666666666666654  444321 11223345


Q ss_pred             hccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHH
Q 010342          185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL  264 (512)
Q Consensus       185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  264 (512)
                      .+.|.+++|..-|+..++..  |+..+   ...++.+.--.++-..                ....+..+...|+...++
T Consensus       117 lK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai  175 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAI  175 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHH
Confidence            56666777776666666543  21111   0111111111111111                122234455667777777


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc
Q 010342          265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ  344 (512)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  344 (512)
                      ..+..+++..+. |...+..-..+|...|++..|+.-++...+..  ..+..++-.+-..+...|+.+.++..+++.++ 
T Consensus       176 ~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-  251 (504)
T KOG0624|consen  176 EMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLK-  251 (504)
T ss_pred             HHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence            777777776544 66777777788888888888888777776654  45666666677777788888888887777553 


Q ss_pred             CCCCCChhhH----HHH---------HHHHHccCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHHHHHHH
Q 010342          345 RGYSPGIVTY----NAV---------LRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRF  408 (512)
Q Consensus       345 ~~~~~~~~~~----~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~  408 (512)
                        +.||....    ..+         +......+++.++....+...+.......   ..+..+-.++...|++.+|++.
T Consensus       252 --ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq  329 (504)
T KOG0624|consen  252 --LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ  329 (504)
T ss_pred             --cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence              24553221    111         12234567788888888887775422122   2455566778889999999999


Q ss_pred             HHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      ..+++... +.|..++.--..+|.-...++.|+.-|+...+.+
T Consensus       330 C~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  330 CKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            99998754 5568888888899999999999999999888764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=8.7e-08  Score=85.62  Aligned_cols=220  Identities=15%  Similarity=0.088  Sum_probs=94.6

Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010342          220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL  299 (512)
Q Consensus       220 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  299 (512)
                      .+.|++.+|.-.|+....+ .|.....|..+.......++-..|+..+++.++..+. +....-.|.-.|...|.-..|+
T Consensus       296 m~nG~L~~A~LafEAAVkq-dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQ-DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HhcCCchHHHHHHHHHHhh-ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence            4455555555555555432 3334445555555555555555555555555554432 4444455555555555555555


Q ss_pred             HHHHHHhhCCCCCCcHHHHHH-------HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010342          300 KVLNDMVAGKFCAPDAVTFTT-------IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE  372 (512)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  372 (512)
                      ..++.......  +-...-..       .-..+..........++|-++....+..+|+.....|.-.|--.|++++|..
T Consensus       374 ~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  374 KMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            55555543220  00000000       0001111111222233333333333333344444444444444455555555


Q ss_pred             HHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD-NYVYAAMIKGLCRSGKIHEAVHFLYE  446 (512)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~  446 (512)
                      .|+.++... |-|..+||.|...++...+.++|+..|+++++.  +|+ +.+...|.-+|...|.+++|.+.|-.
T Consensus       452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            555444432 223334455555554444555555555554432  222 12233344444445555555444433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.95  E-value=9.6e-06  Score=75.11  Aligned_cols=52  Identities=15%  Similarity=0.063  Sum_probs=22.2

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHH
Q 010342          145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE  199 (512)
Q Consensus       145 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  199 (512)
                      .|..|-+.|..+..+++.++--..   .-..|-..+..-+-..|+...|..-|-+
T Consensus       856 aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  856 AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence            344444555554444444332111   0112333444445555555555554433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.95  E-value=5.6e-06  Score=76.61  Aligned_cols=192  Identities=16%  Similarity=0.139  Sum_probs=99.3

Q ss_pred             HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342          251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR  330 (512)
Q Consensus       251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (512)
                      +.+....+.+.+|+.+++.+.+...  -..-|..+.+-|+..|+++.|.++|.+.-          .++-.+..|.+.|+
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence            3444555666666666666655432  23345556666667777777776665432          13344566677777


Q ss_pred             HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD  410 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  410 (512)
                      +..|.++-.+.+   |.......|-+-..-+-..|++.+|+++|-.+.    .|+.     -|.+|-+.|..+..+++.+
T Consensus       807 w~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  807 WEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             HHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence            777766654432   223334444444444555666666666554332    2222     3445556666666555555


Q ss_pred             HhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010342          411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI  478 (512)
Q Consensus       411 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  478 (512)
                      +-.-   ..-..|-..+..-|-..|+...|..-|-+.-         -|...++.|...+.|++|.++
T Consensus       875 k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri  930 (1636)
T KOG3616|consen  875 KHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI  930 (1636)
T ss_pred             HhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence            4321   1112244445555556666666665553322         134444455555555555444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=4.4e-06  Score=78.21  Aligned_cols=380  Identities=11%  Similarity=0.103  Sum_probs=214.4

Q ss_pred             ChHhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHH--------HHHHhhhc
Q 010342           28 NVVSYTTLIHG--YCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK--------LWERMKEE   97 (512)
Q Consensus        28 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~~~~~   97 (512)
                      |..+-..+++.  |..-|+.+.|.+-.+-++.      ...|..+.+.|.+.++.+-|.-.+-.        .+++..++
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~  798 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN  798 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            55666666654  6778999999888877764      45788999999988887777544322        22222222


Q ss_pred             CCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchH
Q 010342           98 EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY  177 (512)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~  177 (512)
                      ++     .+-.-..-.....|.+++|..+|.+.+..+         .|=..|-..|.+++|.++-+.-..-.+   ..||
T Consensus       799 ~~-----e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty  861 (1416)
T KOG3617|consen  799 GE-----EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY  861 (1416)
T ss_pred             Cc-----chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence            11     111113334457799999999998876533         355667788999999887664333222   2355


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc
Q 010342          178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI  257 (512)
Q Consensus       178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  257 (512)
                      ..-..-+...++.+.|++.|++..    .|--..+..|.      .++...+.+.+.+.      +...|.-..+.+-..
T Consensus       862 y~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~  925 (1416)
T KOG3617|consen  862 YNYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESV  925 (1416)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcc
Confidence            555556666788888988887642    12111222221      12233333333322      234555556666667


Q ss_pred             CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 010342          258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL  337 (512)
Q Consensus       258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  337 (512)
                      |+.+.|+.+|....         .|-++++..+-.|+.++|-++-++       ..|......+.+.|-..|++.+|...
T Consensus       926 GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~F  989 (1416)
T KOG3617|consen  926 GEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKF  989 (1416)
T ss_pred             cchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHH
Confidence            77777777776543         345566666667777777777654       33555566677777777777777777


Q ss_pred             HHhhcccCCCCCChhhHHHHHHHHHccCCHH----------------HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342          338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE----------------EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ  401 (512)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  401 (512)
                      |.+.          .++...|+.| +.++++                .|-.+|++.   |.     -+..-+..|-+.|.
T Consensus       990 fTrA----------qafsnAIRlc-KEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm 1050 (1416)
T KOG3617|consen  990 FTRA----------QAFSNAIRLC-KENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGM 1050 (1416)
T ss_pred             HHHH----------HHHHHHHHHH-HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcc
Confidence            7553          1444444433 222222                222222221   10     11223445666676


Q ss_pred             HHHHHHHHHH--------hhc--CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----------CC----------
Q 010342          402 LDEAKRFWDD--------IVW--PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD----------SG----------  451 (512)
Q Consensus       402 ~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~----------  451 (512)
                      +.+|+++--+        ++.  .+...|+...+.-.+-++...++++|..++-..++          .|          
T Consensus      1051 ~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~ 1130 (1416)
T KOG3617|consen 1051 IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAEL 1130 (1416)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHh
Confidence            6666654221        111  12223555555555555666666666555433221          11          


Q ss_pred             ------CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          452 ------VTPNI----VCYNVVIDGACKLSMKREAYQILRE  481 (512)
Q Consensus       452 ------~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~  481 (512)
                            -.|+.    .....+...|.++|.+..|-+-|-+
T Consensus      1131 mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1131 MTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred             cCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence                  12222    3356677888888888877655543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.86  E-value=1.4e-05  Score=76.58  Aligned_cols=479  Identities=12%  Similarity=0.002  Sum_probs=255.9

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhcCCh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR--GVLRTRDV   80 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~--~~~~~~~~   80 (512)
                      .+.+.++...|+.-|+...+..++ |...|..+..+|.+.|.+..|+++|.+....  .|+. +|.....  .-+..|.+
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY  646 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY  646 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence            356788999999999999988665 8899999999999999999999999998764  3433 3433333  33457889


Q ss_pred             hhHHHHHHHHHHHhhhcCCCCc-chHhHHHHHHHHHccCChhHHHHHHHh-------cCCCCCCCcchhHHHHHHHHHhc
Q 010342           81 ERANVLMFKLWERMKEEEDLSV-NNAAFANLVDSLCREGYVNEVFRIAED-------MPQGKSVNEEFACGHMIDSLCRS  152 (512)
Q Consensus        81 ~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~  152 (512)
                      .++...+..++........... ...++-.....+...|-...+...++.       ...+....+...|-.+-++|.-.
T Consensus       647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f  726 (1238)
T KOG1127|consen  647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF  726 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence            9998888777664433222111 122333333333333333333333332       22222111222222111111100


Q ss_pred             CC--hhh----HHHHHH-HHHHcC--------------------CCCCcchHHHHHHHHhc-------cC-chhHHHHHH
Q 010342          153 GR--NHG----ASRVVY-VMRKRG--------------------LTPSLVSYNSIVHGLCK-------HG-GCMRAYQLL  197 (512)
Q Consensus       153 ~~--~~~----a~~~~~-~~~~~g--------------------~~p~~~~~~~l~~~~~~-------~~-~~~~a~~~~  197 (512)
                      -.  ++-    ...+|. +....+                    ...+..+|..++..|.+       .+ +...|...+
T Consensus       727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~  806 (1238)
T KOG1127|consen  727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC  806 (1238)
T ss_pred             HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence            00  000    000010 011111                    11134445545444433       11 233567777


Q ss_pred             HHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCC
Q 010342          198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  277 (512)
                      .+.++.. ..+..+|+.|.-. ...|++.-+.-.|-+-.. ..+.....|..+...+....+++.|...|.......+. 
T Consensus       807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~-sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-  882 (1238)
T KOG1127|consen  807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF-SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-  882 (1238)
T ss_pred             HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh-ccccchhheeccceeEEecccHHHhhHHHHhhhhcCch-
Confidence            7766543 3455566655443 666777777766655442 23444567777788888889999999998887766433 


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc--------cC
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVA----GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP--------QR  345 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~  345 (512)
                      +...|..........|+.-+...+|..-..    .+. .++..-|-........+|+.++-+...+++-.        -.
T Consensus       883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk-a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~  961 (1238)
T KOG1127|consen  883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK-AKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL  961 (1238)
T ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc-cchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh
Confidence            555665555555667877777777765221    121 44544454555555666666655444333110        01


Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCChHhHH----HHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 010342          346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-GVVADSTTYA----IVIDGLCESNQLDEAKRFWDDIVWPSNIHD  420 (512)
Q Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  420 (512)
                      +.+.+...|.......-+.+.+..|..+..++... ....+...|+    ...+.+...|.++.|..-+.....   ..+
T Consensus       962 ~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evd 1038 (1238)
T KOG1127|consen  962 GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVD 1038 (1238)
T ss_pred             cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHH
Confidence            22445566766666666677777776666665321 1123333444    233455556666665554433211   111


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 010342          421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR  495 (512)
Q Consensus       421 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  495 (512)
                      ......-+.. .-.++++++.+.|++.... +-..+ ......++.+....+..+.|...+-+..... +|+....-
T Consensus      1039 Edi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll 1113 (1238)
T KOG1127|consen 1039 EDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLL 1113 (1238)
T ss_pred             HHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHH
Confidence            1111111111 3357888888888887653 11222 2334555555666777777777766665432 44443333

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.86  E-value=2.2e-06  Score=84.67  Aligned_cols=187  Identities=10%  Similarity=0.060  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG  360 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  360 (512)
                      .|.++++.-..-|.-+...++|+++.+..   .....|..|...|.+.+..++|.++++.|++..+  -....|...+..
T Consensus      1499 iWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADF 1573 (1710)
T ss_pred             HHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHH
Confidence            44455554444555555566666655431   2233455555566666666666666666555443  334455555666


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010342          361 LFRLRRVEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI  437 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  437 (512)
                      +.+.++-+.|..++.+..+.  -|.   .....-.+..-.+.|+.+++..+|+..+... +.-...|+.+++.-.++|+.
T Consensus      1574 Ll~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred             HhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCH
Confidence            66666666666666655553  122   1223333344445566666666666665432 33445666666666666666


Q ss_pred             HHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHH
Q 010342          438 HEAVHFLYELVDSGVTPNI--VCYNVVIDGACKLSMKREA  475 (512)
Q Consensus       438 ~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a  475 (512)
                      +.++.+|++.+..++.|-.  ..|...+..--..|+-+.+
T Consensus      1651 ~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence            6666666666666555432  3344444444444554433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.85  E-value=9.9e-07  Score=81.29  Aligned_cols=216  Identities=11%  Similarity=0.058  Sum_probs=176.5

Q ss_pred             cHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342          246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL  325 (512)
Q Consensus       246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  325 (512)
                      .-..+...+...|-...|..++++.         ..|..++.+|...|+..+|..+..+..+.   +|++..|..+.+..
T Consensus       400 ~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVL  467 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhc
Confidence            3455667777888888888888754         46778888999999999999999888873   78999999999998


Q ss_pred             hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342          326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA  405 (512)
Q Consensus       326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  405 (512)
                      ....-+++|.++.+..+..        .-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+.+++..|
T Consensus       468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence            8888899999988775432        11111222234789999999999887754 55677888899999999999999


Q ss_pred             HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .+.|...+... +.+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.++.+
T Consensus       539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            99999998654 6677899999999999999999999999999987 55777888889999999999999999998863

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.84  E-value=2.2e-06  Score=83.59  Aligned_cols=237  Identities=13%  Similarity=0.100  Sum_probs=162.8

Q ss_pred             ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342           28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL-TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA  106 (512)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (512)
                      +...+..|+..+...+++++|.++.+...+.  .|+.. .|..+...+.+.++.+.+..+  .                 
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~-----------------   88 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N-----------------   88 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h-----------------
Confidence            5668999999999999999999999977775  45544 444444566677776665433  2                 


Q ss_pred             HHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010342          107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK  186 (512)
Q Consensus       107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  186 (512)
                         ++.......++.-..-+...+...+  .+..++..+..+|-+.|+.++|.++++++.+..+. |+.+.|.+...|+.
T Consensus        89 ---~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae  162 (906)
T PRK14720         89 ---LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEE  162 (906)
T ss_pred             ---hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHH
Confidence               3333333444433333333444322  33446777899999999999999999999998744 88899999999999


Q ss_pred             cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 010342          187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV  266 (512)
Q Consensus       187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  266 (512)
                      . +.++|.+++.+++..               +...+++..+.+++.++.... +.+...+                ..+
T Consensus       163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f----------------~~i  209 (906)
T PRK14720        163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFF----------------LRI  209 (906)
T ss_pred             h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHH----------------HHH
Confidence            8 999999999887653               566678888888888887542 2222222                223


Q ss_pred             HHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342          267 LVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL  326 (512)
Q Consensus       267 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (512)
                      .+.+..+ +...-..++-.+-..|...+++++++.+++.+.+..  +.|.....-++.+|.
T Consensus       210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~  268 (906)
T PRK14720        210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence            3333322 223344556666677778888888888888888766  556666777777665

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.84  E-value=9.7e-07  Score=79.15  Aligned_cols=222  Identities=13%  Similarity=0.071  Sum_probs=120.4

Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHH
Q 010342          148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK  227 (512)
Q Consensus       148 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  227 (512)
                      -+.+.|+..+|.-.|+...+..+. +...|..|.......++-..|+..+++..+.. +-|......|.-.|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence            356777788888888877776544 66788888888888888788888888877654 4466677777777788887777


Q ss_pred             HHHHHHHHHhCCCCCCc-------ccHHHHHHHHHccCChhhHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010342          228 ARKVLQFMLSKKDVDRT-------RICNIYLRALCLIKNPTELLNVLVFML-QTQCQPDVITLNTVINGFCKMGRIEEAL  299 (512)
Q Consensus       228 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~  299 (512)
                      |.+.++.......+-..       ..+..- ..+........+.++|-.+. ..+..+|+.+...|.-.|--.|++++|.
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            88777776543211000       000000 00011111122222222222 2222244444555555555555555555


Q ss_pred             HHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 010342          300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCM  377 (512)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~  377 (512)
                      +.|+......  +.|...|+.|.-.++...+..+|+..|.+.++-   .|+ +.....|.-.|...|.+++|...|-..
T Consensus       451 Dcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  451 DCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            5555555543  445555555555555555555555555554322   333 233333444455555555555554443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.82  E-value=2e-06  Score=69.88  Aligned_cols=117  Identities=11%  Similarity=0.125  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH-HhcCC--HHHHH
Q 010342          365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL-CRSGK--IHEAV  441 (512)
Q Consensus       365 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~  441 (512)
                      ++.+++...++...+.. +.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+  .++|.
T Consensus        53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            33444444444444432 3444455555555555555555555555555443 33444444444432 33344  35555


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       442 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      +++++..+.+.. +...+..+...+.+.|++++|...|+++.+
T Consensus       131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555555554322 444455555555555555555555555554

>PLN02789 farnesyltranstransferase

Probab=98.80  E-value=8.2e-06  Score=71.37  Aligned_cols=218  Identities=10%  Similarity=0.077  Sum_probs=124.7

Q ss_pred             CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCH--HHH
Q 010342          258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI--QEA  334 (512)
Q Consensus       258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a  334 (512)
                      +..++|+..+..+++..+. +...|+.-..++...| ++++++..++++.+..  +.+..+|+.....+.+.|..  +++
T Consensus        51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhHHH
Confidence            4455566666655554322 3334444444455555 4677777777776655  45555555544444444442  455


Q ss_pred             HHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc---CC----HHHHHH
Q 010342          335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQ----LDEAKR  407 (512)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~  407 (512)
                      +..+.+++...  +-+..+|+...-++...|+++++++.++++.+.+ +-|...|+....++.+.   |.    .++...
T Consensus       128 l~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        128 LEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence            66665655333  3455666666666666677777777777777654 34455555555444433   22    235566


Q ss_pred             HHHHhhcCCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-------------
Q 010342          408 FWDDIVWPSNIHDNYVYAAMIKGLCRS----GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS-------------  470 (512)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------------  470 (512)
                      +..+++... +.|...|+.+...+...    +...+|.+++.+..+.+ ..+...+..|+..|+...             
T Consensus       205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~  282 (320)
T PLN02789        205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL  282 (320)
T ss_pred             HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence            665665543 55666777776666652    33455777777666543 225566667777776532             


Q ss_pred             -----CHHHHHHHHHHHH
Q 010342          471 -----MKREAYQILREMR  483 (512)
Q Consensus       471 -----~~~~a~~~~~~m~  483 (512)
                           ..++|.++++.+.
T Consensus       283 ~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        283 AEELSDSTLAQAVCSELE  300 (320)
T ss_pred             ccccccHHHHHHHHHHHH
Confidence                 3467888888874

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.80  E-value=9.7e-05  Score=66.21  Aligned_cols=151  Identities=10%  Similarity=0.042  Sum_probs=106.3

Q ss_pred             hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010342          260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY  339 (512)
Q Consensus       260 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  339 (512)
                      .+.....+...+.....--..+|-..++.-.+..-+..|..+|.+..+.+...-.+...++++..++ .++..-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            4555566666555433323446677777777888888888888888887764446677777777665 467778888887


Q ss_pred             hhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       340 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      --++..  ..++.-....+..+...++-..+..+|++....+++|+.  .+|..+++--..-|++..+.++-++..
T Consensus       426 LGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  426 LGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            666554  334444556677778888888888888888887655543  478888888888888888888777664

>PF12854 PPR_1: PPR repeat

Probab=98.79  E-value=8.7e-09  Score=55.78  Aligned_cols=34  Identities=56%  Similarity=1.163  Sum_probs=30.7

Q ss_pred             CCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 010342           23 RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR   56 (512)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~   56 (512)
                      .|..||..+|++||.+|++.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3788999999999999999999999999999884

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=1.7e-05  Score=64.23  Aligned_cols=152  Identities=14%  Similarity=0.147  Sum_probs=91.4

Q ss_pred             HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh--
Q 010342          321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE--  398 (512)
Q Consensus       321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  398 (512)
                      -...|.+.+++++|++.+.. .      .+......=+..+.+..+++-|.+.++.|.+.   .+..|.+.|..++.+  
T Consensus       114 aa~i~~~~~~~deAl~~~~~-~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la  183 (299)
T KOG3081|consen  114 AAIIYMHDGDFDEALKALHL-G------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLA  183 (299)
T ss_pred             hhHHhhcCCChHHHHHHHhc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHh
Confidence            34456677777777776644 1      12222222334455666777777777777763   355566666655544  


Q ss_pred             --cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH-HH
Q 010342          399 --SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR-EA  475 (512)
Q Consensus       399 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a  475 (512)
                        .+.+.+|.-+|+++.+. .+|+..+.+..+.++...|++++|..+++...+.... ++.+...++..-...|... -.
T Consensus       184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence              33567777777777643 3677777777777777777777777777777766433 4555555555555555443 34


Q ss_pred             HHHHHHHHH
Q 010342          476 YQILREMRK  484 (512)
Q Consensus       476 ~~~~~~m~~  484 (512)
                      .+.+.+++.
T Consensus       262 ~r~l~QLk~  270 (299)
T KOG3081|consen  262 ERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHh
Confidence            455555554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.76  E-value=7.7e-07  Score=81.97  Aligned_cols=235  Identities=11%  Similarity=0.069  Sum_probs=185.0

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 010342          210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF  289 (512)
Q Consensus       210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  289 (512)
                      ..-..+...+...|-...|..+++++.         .+...+.+|+..|+..+|..+..+-.+  -+|++..|..+.+..
T Consensus       399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL  467 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence            344566778888999999999998875         577889999999999999999998887  377889999998888


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHH
Q 010342          290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE  369 (512)
Q Consensus       290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  369 (512)
                      ....-+++|.++.+....+        .-..+.....+.+++.++.+.|+..+...  +....+|-.+..+..+.+++..
T Consensus       468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHH
Confidence            8878899999999876532        11222223345789999999999987766  3445588888888889999999


Q ss_pred             HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      |.+.|....... +.+...||.+-.+|.+.++..+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++.+
T Consensus       538 av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  538 AVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            999999888753 5566789999999999999999999999999877 56666787788888999999999999998875


Q ss_pred             CC-CCCChhhHHHHHHHHH
Q 010342          450 SG-VTPNIVCYNVVIDGAC  467 (512)
Q Consensus       450 ~~-~~p~~~~~~~l~~~~~  467 (512)
                      .. ...|......++....
T Consensus       616 ~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  616 LRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             hhhhcccchhhHHHHHHHH
Confidence            31 1114444444444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.76  E-value=3.6e-06  Score=68.11  Aligned_cols=158  Identities=16%  Similarity=0.098  Sum_probs=87.9

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 010342          319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE  398 (512)
Q Consensus       319 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  398 (512)
                      ..+-..+...|+-+....+..+....  .+.|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence            44444555555555555555443211  13333344445555666666666666666666543 5566666666666666


Q ss_pred             cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010342          399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI  478 (512)
Q Consensus       399 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  478 (512)
                      .|+++.|..-|.+..+.. +.+....+.|.-.+.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         147 LGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence            666666666666665543 3344455555555556666666666666665543 22445555555666666666666665


Q ss_pred             HHH
Q 010342          479 LRE  481 (512)
Q Consensus       479 ~~~  481 (512)
                      ...
T Consensus       225 ~~~  227 (257)
T COG5010         225 AVQ  227 (257)
T ss_pred             ccc
Confidence            443

>PF12854 PPR_1: PPR repeat

Probab=98.75  E-value=1.4e-08  Score=55.00  Aligned_cols=32  Identities=44%  Similarity=0.877  Sum_probs=21.8

Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          451 GVTPNIVCYNVVIDGACKLSMKREAYQILREM  482 (512)
Q Consensus       451 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  482 (512)
                      |+.||..+|++||.+|++.|+.++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56666666666666666666666666666665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.74  E-value=2.2e-06  Score=72.80  Aligned_cols=191  Identities=14%  Similarity=0.071  Sum_probs=125.3

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh-hh
Q 010342          276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VT  353 (512)
Q Consensus       276 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~  353 (512)
                      ......+..+...+...|+++.|...|+++.......+ ....+..+..++...|++++|...+.+.++..+-.|.. ..
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            34556677777888889999999999998877542111 12466777888889999999999998876554322221 13


Q ss_pred             HHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH
Q 010342          354 YNAVLRGLFRL--------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA  425 (512)
Q Consensus       354 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  425 (512)
                      +..+..++...        |++++|...++.+.+.. +.+...+..+.....    ...      ..        .....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence            44444555443        67788888888887652 222222222221110    000      00        00112


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          426 AMIKGLCRSGKIHEAVHFLYELVDSGV-TP-NIVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       426 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      .+...+.+.|++++|...+++..+... .| ....+..+..++.+.|++++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            466778899999999999999987632 12 3567889999999999999999999888753

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.73  E-value=9.5e-06  Score=80.43  Aligned_cols=224  Identities=11%  Similarity=0.049  Sum_probs=113.0

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHH
Q 010342          279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP---DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN  355 (512)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  355 (512)
                      ...|-..|......++.++|+++.++....-....   -...|.++++.-...|.-+...++|+++.+-   ......|.
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVHL 1534 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHHH
Confidence            34455555555555666666666655554221111   1233444444444555555555555553321   11223445


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHHh
Q 010342          356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCR  433 (512)
Q Consensus       356 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~  433 (512)
                      .|...|.+.+.+++|.++++.|.+. ..-...+|...+..+.+..+-+.|..++.++.+.- +.  ......-.+..-.+
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence            5555566666666666666666553 12344555556666666666566666666555321 11  22334444444455


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHhhccCCCCC
Q 010342          434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA--VTWRILDKLHGNRGNDF  508 (512)
Q Consensus       434 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~  508 (512)
                      .|+.+++..+|+..+..- +--...|+.+++.-.++|+.+.++.+|++....++.|-.  ..|...+..=...|++.
T Consensus      1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            566666666666555542 113445666666666666666666666666655555542  33444444444444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.72  E-value=4.1e-06  Score=67.77  Aligned_cols=159  Identities=15%  Similarity=0.135  Sum_probs=113.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342          283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF  362 (512)
Q Consensus       283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  362 (512)
                      ..+-..+...|+-+....+........  +.+.......+....+.|++..|...+++...  .-++|...|+.+.-+|.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald  145 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD  145 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence            445556666677777777766655443  45555666677777888888888888877543  33777788888888888


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342          363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH  442 (512)
Q Consensus       363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  442 (512)
                      +.|+++.|..-|.+..+.. +-++..++.+...|.-.|+++.|..++......+ .-|..+-..+.......|++++|.+
T Consensus       146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence            8888888888888887753 4455667777777777888888888888776543 4466666777777778888888877


Q ss_pred             HHHHH
Q 010342          443 FLYEL  447 (512)
Q Consensus       443 ~~~~~  447 (512)
                      +..+-
T Consensus       224 i~~~e  228 (257)
T COG5010         224 IAVQE  228 (257)
T ss_pred             hcccc
Confidence            66543

>PLN02789 farnesyltranstransferase

Probab=98.71  E-value=1.2e-05  Score=70.27  Aligned_cols=213  Identities=10%  Similarity=0.056  Sum_probs=156.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342          284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG-RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF  362 (512)
Q Consensus       284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  362 (512)
                      .+-..+...+..++|+.+.+++....  +.+..+|+....++...| ++++++..+.+++...  +.+..+|+.....+.
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~  117 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHH
Confidence            33444555678899999999999865  556667776666677777 5799999998877554  444455665544455


Q ss_pred             ccCC--HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc---CCH
Q 010342          363 RLRR--VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS---GKI  437 (512)
Q Consensus       363 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~  437 (512)
                      +.|+  .+++..+++.+.+.. +-|..+|+....++...|+++++++.+.++++.+ +.|...|+.....+.+.   |..
T Consensus       118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccc
Confidence            5565  367888998898865 5678889999999999999999999999999876 56677887777666554   222


Q ss_pred             ----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccC
Q 010342          438 ----HEAVHFLYELVDSGVTPNIVCYNVVIDGACKL----SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR  504 (512)
Q Consensus       438 ----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  504 (512)
                          ++..++..+++...+ -|...|+.+...+...    ++..+|.+.+.+..+.+ +.+...+..|++.|+..
T Consensus       196 ~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        196 EAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence                467777778877653 3788899888888773    44567888888877643 33566788888888763

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.71  E-value=4.2e-06  Score=68.00  Aligned_cols=156  Identities=8%  Similarity=0.095  Sum_probs=114.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC
Q 010342          286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR  365 (512)
Q Consensus       286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  365 (512)
                      +..|...|+++.+......+..     |. .       .+...++.+++...+.+.+...  +.+...|..+...|...|
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~-~-------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g   87 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD-----PL-H-------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRN   87 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC-----cc-c-------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCC
Confidence            4467788888876555433321     11 0       1223566677777777766555  667788888889999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCChHhHHHHHHHH-HhcCC--HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342          366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGL-CESNQ--LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH  442 (512)
Q Consensus       366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  442 (512)
                      ++++|...|++..+.. +.+...+..+..++ ...|+  .++|.+++++..+.+ +.+...+..+...+...|++++|+.
T Consensus        88 ~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~  165 (198)
T PRK10370         88 DYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIE  165 (198)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999998865 55777788887764 66676  589999999998776 5677888888899999999999999


Q ss_pred             HHHHHHHCCCCCChhhH
Q 010342          443 FLYELVDSGVTPNIVCY  459 (512)
Q Consensus       443 ~~~~~~~~~~~p~~~~~  459 (512)
                      .|+++.+.. +|+..-+
T Consensus       166 ~~~~aL~l~-~~~~~r~  181 (198)
T PRK10370        166 LWQKVLDLN-SPRVNRT  181 (198)
T ss_pred             HHHHHHhhC-CCCccHH
Confidence            999998875 4444333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=1.1e-05  Score=65.34  Aligned_cols=208  Identities=15%  Similarity=0.124  Sum_probs=134.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342          283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF  362 (512)
Q Consensus       283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  362 (512)
                      ..+-++|...|.+.....-.   ....  .|.......+......-++.+.-+.-+.+.+.......+......-...|+
T Consensus        45 ~y~~raylAlg~~~~~~~eI---~~~~--~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~  119 (299)
T KOG3081|consen   45 VYMYRAYLALGQYQIVISEI---KEGK--ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYM  119 (299)
T ss_pred             HHHHHHHHHccccccccccc---cccc--CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhh
Confidence            33445555555544333222   2211  334444444444444444544444444444434433444333334455688


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc----CCHH
Q 010342          363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS----GKIH  438 (512)
Q Consensus       363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~  438 (512)
                      +.+++++|++.....      -+......=+..+.+..+++-|.+.+++|.+.   .+..+.+.|..++.+.    +.+.
T Consensus       120 ~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q  190 (299)
T KOG3081|consen  120 HDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ  190 (299)
T ss_pred             cCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence            999999999988762      23344444455677888999999999999763   3556888888877653    5688


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCC
Q 010342          439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN  506 (512)
Q Consensus       439 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  506 (512)
                      +|.-+|++|-++ ..|++.+.+....++...|++++|..++++..... .-++.|..-++.+--..|.
T Consensus       191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK  256 (299)
T ss_pred             hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence            999999999774 48899999999999999999999999999998754 4456666655544444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.67  E-value=5.9e-06  Score=70.23  Aligned_cols=187  Identities=12%  Similarity=0.012  Sum_probs=129.7

Q ss_pred             CcccHHHHHHHHHccCChhhHHHHHHHHHhcCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH-HHHH
Q 010342          243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-P-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA-VTFT  319 (512)
Q Consensus       243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~  319 (512)
                      ....+......+...|+++.|...++.+....+. | ....+..+..++...|++++|...++++.+.....+.. .++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            3456777788889999999999999999876532 1 12466778899999999999999999998765212221 2455


Q ss_pred             HHHHHHhhc--------CCHHHHHHHHHhhcccCCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHH
Q 010342          320 TIIFGLLNV--------GRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA  390 (512)
Q Consensus       320 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  390 (512)
                      .+..++...        |+.++|.+.+.+.+...   |+. ..+..+.... .   ...      ...        ....
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~-~---~~~------~~~--------~~~~  170 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMD-Y---LRN------RLA--------GKEL  170 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHH-H---HHH------HHH--------HHHH
Confidence            555666554        77889999998876443   332 2222221110 0   000      000        1123


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          391 IVIDGLCESNQLDEAKRFWDDIVWPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .+...|.+.|++++|...+++..+...  +.....+..+..++...|++++|...++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            566778899999999999999886531  224568889999999999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.66  E-value=1.1e-06  Score=67.43  Aligned_cols=94  Identities=7%  Similarity=-0.155  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342          389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK  468 (512)
Q Consensus       389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  468 (512)
                      +..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|++..+.+ +.+...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            4445566666777777777777766554 4566666667777777777777777777776654 2356666666677777


Q ss_pred             cCCHHHHHHHHHHHHH
Q 010342          469 LSMKREAYQILREMRK  484 (512)
Q Consensus       469 ~g~~~~a~~~~~~m~~  484 (512)
                      .|++++|...++...+
T Consensus       105 ~g~~~eAi~~~~~Al~  120 (144)
T PRK15359        105 MGEPGLAREAFQTAIK  120 (144)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            7777777777777665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.65  E-value=0.0005  Score=65.73  Aligned_cols=93  Identities=13%  Similarity=0.055  Sum_probs=54.9

Q ss_pred             HHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010342          354 YNAVLRGLFRLRRVE---EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG  430 (512)
Q Consensus       354 ~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  430 (512)
                      .+.++..|-+.++..   +|+.+++...... +.|..+--.+++.|.-.|-+..|.++|..+--..+..|..-|. +...
T Consensus       439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~  516 (932)
T KOG2053|consen  439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR  516 (932)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence            345666777777655   3444555544432 3445555667788888888888888888775555555433322 2234


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 010342          431 LCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       431 ~~~~g~~~~a~~~~~~~~  448 (512)
                      +...|++..+...+....
T Consensus       517 ~~t~g~~~~~s~~~~~~l  534 (932)
T KOG2053|consen  517 AETSGRSSFASNTFNEHL  534 (932)
T ss_pred             HHhcccchhHHHHHHHHH
Confidence            444566666666555443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.62  E-value=3.1e-06  Score=64.89  Aligned_cols=110  Identities=8%  Similarity=-0.087  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC  432 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  432 (512)
                      .+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+++...+ +.+...+..+..++.
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~  103 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK  103 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            35566778889999999999999998865 5677888999999999999999999999998765 678888999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010342          433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG  465 (512)
Q Consensus       433 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  465 (512)
                      ..|++++|...|++.++.. +.+...|.....+
T Consensus       104 ~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~  135 (144)
T PRK15359        104 MMGEPGLAREAFQTAIKMS-YADASWSEIRQNA  135 (144)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            9999999999999998864 2244445444333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.62  E-value=2.4e-05  Score=75.78  Aligned_cols=146  Identities=14%  Similarity=0.118  Sum_probs=101.8

Q ss_pred             CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 010342          312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI  391 (512)
Q Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  391 (512)
                      +.+...+..|.....+.|.+++|..+++..++..  +-+......+...+.+.+++++|...+++..... +.+......
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            4557777777777888888888888887755332  2334455566777778888888888888887754 445566777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 010342          392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV  462 (512)
Q Consensus       392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  462 (512)
                      +..++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+.. .|....|+.+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~  228 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR  228 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence            7777888888888888888887633 4456677778888888888888888888777652 3333444433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.60  E-value=3.3e-05  Score=74.90  Aligned_cols=136  Identities=15%  Similarity=0.049  Sum_probs=78.8

Q ss_pred             CCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHH
Q 010342          240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT  319 (512)
Q Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  319 (512)
                      .+.+...+..+.....+.|.+++|..+++...+..+. +......+...+.+.+++++|+..+++.....  +.+.....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence            3334555666666666666666666666666655432 34445555556666666666666666666554  44555555


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342          320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI  380 (512)
Q Consensus       320 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  380 (512)
                      .+..++.+.|++++|..+|++.+...  +-+..++..+...+...|+.++|...|+...+.
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56666666666666666666654311  223455555666666666666666666666553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.60  E-value=2.8e-06  Score=65.01  Aligned_cols=104  Identities=10%  Similarity=0.015  Sum_probs=64.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      .....+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            445555566666677777777776665543 4455666666666666677777777776666554 33455566666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 010342          467 CKLSMKREAYQILREMRKNGLNPDAVTW  494 (512)
Q Consensus       467 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~  494 (512)
                      ...|++++|.+.+++..+  +.|+...+
T Consensus        96 ~~~g~~~~A~~~~~~al~--~~p~~~~~  121 (135)
T TIGR02552        96 LALGEPESALKALDLAIE--ICGENPEY  121 (135)
T ss_pred             HHcCCHHHHHHHHHHHHH--hccccchH
Confidence            677777777777776665  34554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.58  E-value=0.00048  Score=62.01  Aligned_cols=186  Identities=8%  Similarity=0.081  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH---hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHH
Q 010342          295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGL---LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK  371 (512)
Q Consensus       295 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  371 (512)
                      .+++..+++.....-. ..+..+|..+.+.-   ......+.....+.+.+......|+. +|..+++.-.+..-++.|.
T Consensus       309 t~e~~~~yEr~I~~l~-~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR  386 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLL-KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAAR  386 (656)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHH
Confidence            4556666666554221 22333333333221   11223556666777766556566664 6777888888888899999


Q ss_pred             HHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          372 EVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       372 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .+|.++.+.+..+ +..++++++.-|+ .++.+-|.++|+--.+.- ..+..--...+.-+...++-..+..+|++.+..
T Consensus       387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            9999999987777 6677888888766 578899999999876542 344445567788888899999999999999988


Q ss_pred             CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          451 GVTPN--IVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       451 ~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ++.|+  ..+|..++.--..-|+...+.++-+++..
T Consensus       465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            65654  47899999999999999999999888754

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=0.00012  Score=59.13  Aligned_cols=187  Identities=13%  Similarity=0.111  Sum_probs=119.4

Q ss_pred             ChhhHHHHHHHHHhc---C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHH
Q 010342          259 NPTELLNVLVFMLQT---Q-CQPDVI-TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE  333 (512)
Q Consensus       259 ~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  333 (512)
                      +++++.+++..++..   | ..++.. .|..++-+....|+.+.|...++++...-  +.+...-..-...+-..|.+++
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence            444455544444321   2 233333 34455556667788888888888877654  2333322222223455678888


Q ss_pred             HHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       334 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      |+++++..+.+.  +.|..++.--+...-..|+.-.|++-+.+..+. +..|...|.-+.+.|...|++++|.-.+++++
T Consensus       105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            888888877555  556666665555555667767777777777764 46788888888888888888888888888887


Q ss_pred             cCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCC
Q 010342          414 WPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSG  451 (512)
Q Consensus       414 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~  451 (512)
                      -.. |.+...+..+.+.+...|   +.+.+.++|.+.++..
T Consensus       182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            553 455556666666655544   4566788888777754

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.47  E-value=0.00015  Score=71.24  Aligned_cols=239  Identities=8%  Similarity=0.039  Sum_probs=152.8

Q ss_pred             CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 010342          173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR  252 (512)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  252 (512)
                      +...+..|+..+...+++++|.++.+...+.. +-....|-.+...+...++.+.+..+  .+               +.
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~   91 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL---------------ID   91 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence            44577888888888899999999888766642 22333444444456666665555544  22               22


Q ss_pred             HHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH
Q 010342          253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ  332 (512)
Q Consensus       253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  332 (512)
                      ......++..+..+...+.+.+  -+...+..+..+|.+.|+.++|..+++++.+..  +.++...+.+...|... +.+
T Consensus        92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHH
Confidence            2223334444444444555432  244577888899999999999999999999877  67888899999888888 999


Q ss_pred             HHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 010342          333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI  412 (512)
Q Consensus       333 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  412 (512)
                      +|.+++.+.+..                +...+++..+..+|.++.... +.+...+..+.+.....-            
T Consensus       167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~------------  217 (906)
T PRK14720        167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR------------  217 (906)
T ss_pred             HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh------------
Confidence            999888775422                566678888888888888753 223333332322221111            


Q ss_pred             hcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       413 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                         +..--..++-.+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus       218 ---~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        218 ---EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             ---ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence               11222334455556666777788888888888776422 5555666666665

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.46  E-value=1.1e-05  Score=61.60  Aligned_cols=98  Identities=15%  Similarity=0.093  Sum_probs=75.7

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010342          351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG  430 (512)
Q Consensus       351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  430 (512)
                      ......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++...+.+ +.+...+..+...
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~   94 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC   94 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence            3445566677778888888888888887754 5566777788888888888888888888887664 5566777778888


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 010342          431 LCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       431 ~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +...|++++|...|++..+.
T Consensus        95 ~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        95 LLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            88888888888888888775

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=0.00011  Score=65.11  Aligned_cols=147  Identities=16%  Similarity=0.163  Sum_probs=78.0

Q ss_pred             HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCCHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD-STTYAIVIDGLCESNQLD  403 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  403 (512)
                      +...|.+++|+..+...+...  +-|+.........+...++.++|.+.++.+...  .|+ ....-.+..+|.+.|++.
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence            344555566666555543332  333334444445555666666666666666554  233 334444555666666666


Q ss_pred             HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      +|..+++...... +.|...|..|.++|...|+..++.....                  ..+...|+++.|...+....
T Consensus       392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence            6666666555433 4555566666666666665555544332                  23334566666666666665


Q ss_pred             HCCCCCChHHHH
Q 010342          484 KNGLNPDAVTWR  495 (512)
Q Consensus       484 ~~~~~p~~~~~~  495 (512)
                      +. ..++..+|.
T Consensus       453 ~~-~~~~~~~~a  463 (484)
T COG4783         453 QQ-VKLGFPDWA  463 (484)
T ss_pred             Hh-ccCCcHHHH
Confidence            54 345544443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.36  E-value=0.0002  Score=63.61  Aligned_cols=147  Identities=18%  Similarity=0.193  Sum_probs=104.3

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCC
Q 010342          288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRR  366 (512)
Q Consensus       288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~  366 (512)
                      .+...|.+++|+..++.+....  +.|+..+......+.+.++.++|.+.+++++...   |+ ....-.+..++.+.|+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---P~~~~l~~~~a~all~~g~  389 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALD---PNSPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCccHHHHHHHHHHHhcCC
Confidence            4455678888888888877665  5667777777778888888888888887766443   43 4455566777888888


Q ss_pred             HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE  446 (512)
Q Consensus       367 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  446 (512)
                      +.+|+.+++...... +.|+..|..|..+|...|+..++..-..+...                  ..|+++.|...+..
T Consensus       390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~  450 (484)
T COG4783         390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMR  450 (484)
T ss_pred             hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHH
Confidence            888888888877754 67777888888888888888877777776632                  34777777777776


Q ss_pred             HHHCCCCCChhhH
Q 010342          447 LVDSGVTPNIVCY  459 (512)
Q Consensus       447 ~~~~~~~p~~~~~  459 (512)
                      ..+.. .++..+|
T Consensus       451 A~~~~-~~~~~~~  462 (484)
T COG4783         451 ASQQV-KLGFPDW  462 (484)
T ss_pred             HHHhc-cCCcHHH
Confidence            66542 3444444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=0.00034  Score=56.61  Aligned_cols=189  Identities=13%  Similarity=0.125  Sum_probs=109.5

Q ss_pred             cCchhHHHHHHHHHHhC---C-CCCchh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChh
Q 010342          187 HGGCMRAYQLLEEGIQF---G-YLPSEH-TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT  261 (512)
Q Consensus       187 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  261 (512)
                      ..+.++..+++.++...   | ..++.. .|..++-+....|..+.|...++.+..+ .+.+..+...-.          
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lka----------   93 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKA----------   93 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHH----------
Confidence            44566677766666532   3 334433 3344444555566666666666666543 122222211111          


Q ss_pred             hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342          262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV  341 (512)
Q Consensus       262 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  341 (512)
                                               -.+...|++++|+++++.+.+.+  +.|..++-.-+-..-..|+..+|++-+.+.
T Consensus        94 -------------------------m~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~Y  146 (289)
T KOG3060|consen   94 -------------------------MLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEY  146 (289)
T ss_pred             -------------------------HHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence                                     12334567777777777777665  455555555555555566666676666665


Q ss_pred             cccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHHhhcCC
Q 010342          342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPS  416 (512)
Q Consensus       342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~  416 (512)
                      ++..  ..|...|..+...|...|++++|.-.++++.-.. |.++..+..+.+.+...|   +.+.+.++|.+.++..
T Consensus       147 L~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  147 LDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            4433  5677777777777777777777777777776643 445555556665554444   4566777777776554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.32  E-value=0.0036  Score=60.20  Aligned_cols=221  Identities=14%  Similarity=0.071  Sum_probs=133.6

Q ss_pred             cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHG--YCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER   82 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~   82 (512)
                      ...+++..|.+....+.+.  .||. .|..++.+  +.+.|+.++|..+++.....+.. |..|+..+-.+|...++.++
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            3567888899988888876  4554 34455555  45789999999888888765433 77788888889999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhH----HHHHHHhcCCCCCCCcchhHHHHHHHHHhc-CCh--
Q 010342           83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE----VFRIAEDMPQGKSVNEEFACGHMIDSLCRS-GRN--  155 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~--  155 (512)
                      +..+|+++...       .|+..-...+..+|.+.+++.+    |.++++..++.     ...+=+++...... ...  
T Consensus        96 ~~~~Ye~~~~~-------~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-----~yyfWsV~Slilqs~~~~~~  163 (932)
T KOG2053|consen   96 AVHLYERANQK-------YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-----AYYFWSVISLILQSIFSENE  163 (932)
T ss_pred             HHHHHHHHHhh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHhccCCcc
Confidence            99888887644       4444555566777777776654    55666644432     22333344443332 111  


Q ss_pred             -------hhHHHHHHHHHHcC-CCCCcchHHHHHHHHhccCchhHHHHHHHH-HHhCCCCCchhhHHHHHHHHhccCCHH
Q 010342          156 -------HGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-GIQFGYLPSEHTYKVLVEGLCGESDLE  226 (512)
Q Consensus       156 -------~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~  226 (512)
                             .-|.+.++.+.+.+ ..-+..-...-...+...|.+++|++++.. ..+.-..-+...-+.-+..+...+.+.
T Consensus       164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~  243 (932)
T KOG2053|consen  164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ  243 (932)
T ss_pred             cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence                   12444555555443 111111112222334456778888888743 222222234444445566677777888


Q ss_pred             HHHHHHHHHHhCCCC
Q 010342          227 KARKVLQFMLSKKDV  241 (512)
Q Consensus       227 ~a~~~~~~~~~~~~~  241 (512)
                      +..++-.++..++..
T Consensus       244 ~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  244 ELFELSSRLLEKGND  258 (932)
T ss_pred             HHHHHHHHHHHhCCc
Confidence            777777777765433

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.30  E-value=1.5e-06  Score=48.03  Aligned_cols=33  Identities=42%  Similarity=0.837  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010342          458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPD  490 (512)
Q Consensus       458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~  490 (512)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            677888888888888888888888888787776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.30  E-value=1.6e-06  Score=47.98  Aligned_cols=34  Identities=38%  Similarity=0.823  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS   64 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~   64 (512)
                      +||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            7999999999999999999999999999999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.27  E-value=1.8e-06  Score=47.28  Aligned_cols=33  Identities=36%  Similarity=0.735  Sum_probs=31.5

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010342           30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP   62 (512)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~   62 (512)
                      .+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999887

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.24  E-value=2.4e-06  Score=46.80  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010342          457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNP  489 (512)
Q Consensus       457 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p  489 (512)
                      .+|+.++.+|.+.|+++.|.+++++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356667777777777777777777776666665

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.24  E-value=6e-05  Score=67.44  Aligned_cols=123  Identities=15%  Similarity=0.097  Sum_probs=76.9

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 010342          355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS  434 (512)
Q Consensus       355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  434 (512)
                      ..++..+...++++.|..+++++.+..  |+  ....++..+...++-.+|.+++.+.++.. +.+...+......|.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            344555555666777777777766543  33  33345566666666667777776666443 44555666666667777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      ++++.|..+.+++.... +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus       248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            77777777777776652 2244567777777777777777776666654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.23  E-value=8.8e-05  Score=57.22  Aligned_cols=126  Identities=14%  Similarity=0.076  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH--HhHHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN--YVYAAM  427 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l  427 (512)
                      .|..++..+ ..++...+...++.+.+.. +.+.   ...-.+...+...|++++|...|+.+......++.  .....|
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344444444 3667777777777777643 2221   22333446667777777888777777765422221  234446


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM  482 (512)
Q Consensus       428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  482 (512)
                      ...+...|++++|...++.....  ......+......+.+.|++++|...|+..
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            66777778888887777653322  233445666777777788888887777653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=0.0015  Score=60.77  Aligned_cols=371  Identities=12%  Similarity=0.093  Sum_probs=186.5

Q ss_pred             CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHH------HHHHHHccCChhHHHHHHHhcCCCC
Q 010342           61 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN------LVDSLCREGYVNEVFRIAEDMPQGK  134 (512)
Q Consensus        61 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~g~~~~a~~~~~~~~~~~  134 (512)
                      .|.+..|..+.......-.++.|+..|-+.    ..-.+++.-...-..      -...-.--|++++|.+++-++..++
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc----~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC----GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhh----ccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence            577888877776666666666665543222    222222111110000      1122233588999999988877655


Q ss_pred             CCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhH
Q 010342          135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT--PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY  212 (512)
Q Consensus       135 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  212 (512)
                      .         .+..+.+.|++-...++++.--. +..  --...|+.+...++....|++|.+.|..-..         .
T Consensus       765 L---------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~  825 (1189)
T KOG2041|consen  765 L---------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T  825 (1189)
T ss_pred             h---------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence            3         67777888888777666643111 000  0124677777777777788888887765322         1


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 010342          213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM  292 (512)
Q Consensus       213 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  292 (512)
                      ...+.++.+..++++-+.+-+.     .+.+....-.+..++...|.-++|.+.+-+..    .|     ...+..|...
T Consensus       826 e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~L  891 (1189)
T KOG2041|consen  826 ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVEL  891 (1189)
T ss_pred             HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHH
Confidence            2355666666666665554433     34456677777888888888887776654321    11     1345667777


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCcHHHHHHH--------------HHHHhhcCCHHHHHHHHHhhccc---CCCCCChhhHH
Q 010342          293 GRIEEALKVLNDMVAGKFCAPDAVTFTTI--------------IFGLLNVGRIQEALNLLYQVMPQ---RGYSPGIVTYN  355 (512)
Q Consensus       293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~  355 (512)
                      ++|.+|.++-+...     .|...+..+-              |..+.+.|..-+|.+++.++..+   .+.++-..--.
T Consensus       892 nQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl  966 (1189)
T KOG2041|consen  892 NQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL  966 (1189)
T ss_pred             HHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence            78888877766554     3444333211              22233344444444444443211   11111111001


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010342          356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG  435 (512)
Q Consensus       356 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  435 (512)
                      .++.++ -..+..++.+-.+.....|...+...       +...|-..++-++.+..- .  -.....|..|..-....|
T Consensus       967 YVL~Al-LvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~W-r--gAEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen  967 YVLGAL-LVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTW-R--GAEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred             HHHHHH-HHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhh-h--hHHHHHHHHHHHHHHHhc
Confidence            111111 11122222222222222332211110       111122222222222111 0  112344555666666778


Q ss_pred             CHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          436 KIHEAVHFLYELVD-SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       436 ~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .++.|.+.--.+.+ ..+-|....|+.+.-+.+....+...-+.|-++..
T Consensus      1036 ~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred             hHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence            88888776555544 24566777887776666655555555555544443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.20  E-value=0.0037  Score=55.30  Aligned_cols=455  Identities=13%  Similarity=0.122  Sum_probs=221.8

Q ss_pred             cccCcHHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH--Hh
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHVPNVV------SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV--LR   76 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~~   76 (512)
                      -+++++.+|.++|.++-+.- ..++.      .-+.++++|.. ++.+.....+....+.  .| ...|..+..+.  .+
T Consensus        17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK   91 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence            46889999999999888762 21222      23567777754 4667777777766664  23 44566666554  45


Q ss_pred             cCChhhHHHHHHHHHHHhhhcCCCCcchHh---------HHHHHHHHHccCChhHHHHHHHhcCCCCC----CCcchhHH
Q 010342           77 TRDVERANVLMFKLWERMKEEEDLSVNNAA---------FANLVDSLCREGYVNEVFRIAEDMPQGKS----VNEEFACG  143 (512)
Q Consensus        77 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~  143 (512)
                      .+.+.+|.+.+.....+.......-.+...         -+..+..+...|++.++..+++++...-.    .-+..+|+
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd  171 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD  171 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence            788888888876666554333222222111         12233444555555555555555433222    13444444


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHc---CCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010342          144 HMIDSLCRSGRNHGASRVVYVMRKR---GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC  220 (512)
Q Consensus       144 ~l~~~~~~~~~~~~a~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  220 (512)
                      .++-.+++.        .|-++++.   .+-|+   |--++-.|.+.      ...++...-..+.|.......++....
T Consensus       172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhlf  234 (549)
T PF07079_consen  172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHLF  234 (549)
T ss_pred             HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence            433333221        22222111   11111   11122121110      000000000012333333333333222


Q ss_pred             cc--CCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHccCChhhHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcC
Q 010342          221 GE--SDLEKARKVLQFMLSKKDVDRTR-ICNIYLRALCLIKNPTELLNVLVFMLQTQCQ----PDVITLNTVINGFCKMG  293 (512)
Q Consensus       221 ~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~  293 (512)
                      -.  ....--+++++.....-..|+.. +...+...+..  +.+++..+.+.+....+.    .-..++..++....+.+
T Consensus       235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~  312 (549)
T PF07079_consen  235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV  312 (549)
T ss_pred             hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  11122233333333233333322 22233333333  455555444444333211    12346677777788888


Q ss_pred             CHHHHHHHHHHHhhCCCCCCcHHHHH-------HHHHHHh-h---cCCHHHHHHHHHhhcccCCCCCCh-hhHHHHH---
Q 010342          294 RIEEALKVLNDMVAGKFCAPDAVTFT-------TIIFGLL-N---VGRIQEALNLLYQVMPQRGYSPGI-VTYNAVL---  358 (512)
Q Consensus       294 ~~~~a~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~-~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~---  358 (512)
                      +...|.+.+.-+....   |+...-.       .+-+..+ .   .-+...=+.++.. .+..  ..|. .....++   
T Consensus       313 ~T~~a~q~l~lL~~ld---p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~-~qs~--DiDrqQLvh~L~~~A  386 (549)
T PF07079_consen  313 QTEEAKQYLALLKILD---PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE-IQSY--DIDRQQLVHYLVFGA  386 (549)
T ss_pred             hHHHHHHHHHHHHhcC---CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH-HHhh--cccHHHHHHHHHHHH
Confidence            8888888877666432   2222111       1111111 0   1111222233322 2122  1121 1111222   


Q ss_pred             HHHHccCC-HHHHHHHHHHHHhCCCCCChHhHHHHH----HHHHh---cCCHHHHHHHHHHhhcCCCCC----CHHhHHH
Q 010342          359 RGLFRLRR-VEEAKEVFNCMLGIGVVADSTTYAIVI----DGLCE---SNQLDEAKRFWDDIVWPSNIH----DNYVYAA  426 (512)
Q Consensus       359 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~~----~~~~~~~  426 (512)
                      .-+-+.|. -++|..+++...+.. +-|..+-|.+.    .+|..   ...+.+-..+-+-+.+.|++|    +...-|.
T Consensus       387 k~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~  465 (549)
T PF07079_consen  387 KHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF  465 (549)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence            23344555 788999999888742 23333333322    22322   234444455555555667665    3345555


Q ss_pred             HHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342          427 MIKG--LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL  497 (512)
Q Consensus       427 l~~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  497 (512)
                      |.++  +..+|++.++.-.-..+.+  +.|++.+|..+.-+.....++++|..++..     ++|+..+++.=
T Consensus       466 LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dsk  531 (549)
T PF07079_consen  466 LADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSK  531 (549)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHH
Confidence            5544  5578999988766555554  578999999999999999999999999876     57777777643

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=8.9e-05  Score=66.34  Aligned_cols=125  Identities=14%  Similarity=0.165  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG  360 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  360 (512)
                      ....++..+...++++.|+.+|+++.+..   |+  ....++..+...++..+|++++.+.+...  +.+...+..-...
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF  243 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence            34556677777889999999999998753   44  34557778888888899999999887543  4455666666777


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      +.+.++++.|..+.+++.+.. |.+-.+|..|..+|...|+++.|+..++.+.
T Consensus       244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            889999999999999998863 4455589999999999999999999888774

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.12  E-value=0.00021  Score=55.08  Aligned_cols=117  Identities=15%  Similarity=0.045  Sum_probs=58.9

Q ss_pred             cCCHHHHHHHHHhhcccCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh--HhHHHHHHHHHhcCCHHH
Q 010342          328 VGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       328 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~  404 (512)
                      .++...+...+..+....+-.+ .......+...+...|++++|...|+.+......|+.  .....|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            4555555555555433321110 0122223344555666666666666666664311211  123334556666666666


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE  446 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  446 (512)
                      |...++.....  ......+....+.|.+.|+.++|...|++
T Consensus       104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            66666553322  22334455566666666666666666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.07  E-value=0.00021  Score=53.09  Aligned_cols=98  Identities=11%  Similarity=-0.007  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP--NIVCYNVVI  463 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~  463 (512)
                      ++..++..+.+.|++++|...+..+.....  +.....+..+..++.+.|++++|...++.+.......  ....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            344555566666777777777766654321  1112345556667777777777777777766542221  234566666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 010342          464 DGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       464 ~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      .++.+.|++++|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            6677777777777777777664

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.05  E-value=0.00011  Score=52.08  Aligned_cols=94  Identities=15%  Similarity=0.118  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342          389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK  468 (512)
Q Consensus       389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  468 (512)
                      +..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            3445555666666777777666665443 3333555666666666677777777776666553 2233456666666777


Q ss_pred             cCCHHHHHHHHHHHHH
Q 010342          469 LSMKREAYQILREMRK  484 (512)
Q Consensus       469 ~g~~~~a~~~~~~m~~  484 (512)
                      .|++++|...++...+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            7777777777666654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.04  E-value=0.001  Score=57.95  Aligned_cols=54  Identities=11%  Similarity=0.139  Sum_probs=26.7

Q ss_pred             HHhcc-CchhHHHHHHHHHHhC----CCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010342          183 GLCKH-GGCMRAYQLLEEGIQF----GYLP--SEHTYKVLVEGLCGESDLEKARKVLQFMLS  237 (512)
Q Consensus       183 ~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  237 (512)
                      .|... |+++.|.+.|+++.+.    + .+  -..++..+...+.+.|++++|.++|+++..
T Consensus       123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34444 5666666666655432    1 11  123444555566666666666666666554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.02  E-value=0.0001  Score=66.35  Aligned_cols=123  Identities=12%  Similarity=0.189  Sum_probs=82.7

Q ss_pred             CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHH
Q 010342          312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR-GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA  390 (512)
Q Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  390 (512)
                      +.+......++..+....+.+.+..++.+..... ....-+.|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            4566666777777777777777777776643322 122234455677787888888888888777777777788888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 010342          391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS  434 (512)
Q Consensus       391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  434 (512)
                      .|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88888888888888877777776555555555555444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.02  E-value=0.0002  Score=64.44  Aligned_cols=92  Identities=10%  Similarity=-0.021  Sum_probs=69.6

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010342          358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI  437 (512)
Q Consensus       358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  437 (512)
                      ...+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|...+++++... +.+...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence            445567788888888888888754 4566677777788888888888888888887664 45666777778888888888


Q ss_pred             HHHHHHHHHHHHCC
Q 010342          438 HEAVHFLYELVDSG  451 (512)
Q Consensus       438 ~~a~~~~~~~~~~~  451 (512)
                      ++|...|++.++.+
T Consensus        87 ~eA~~~~~~al~l~  100 (356)
T PLN03088         87 QTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHhC
Confidence            88888888887753

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.98  E-value=3.5e-05  Score=53.63  Aligned_cols=84  Identities=13%  Similarity=0.372  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC----ChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPNSLTYSVLVRGVLRTR----DVERANVLMFKLWERMKEEEDLSVNNAA  106 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (512)
                      -..-|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+..    +.+...--+..+++.+-.. .+.|+..+
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et  106 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET  106 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence            34455555556777777777777777777 677777777776665422    2332222222233333222 57777777


Q ss_pred             HHHHHHHHHc
Q 010342          107 FANLVDSLCR  116 (512)
Q Consensus       107 ~~~l~~~~~~  116 (512)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            7777766654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.95  E-value=0.00023  Score=61.59  Aligned_cols=129  Identities=12%  Similarity=0.087  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh-cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                      +|..+++..-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+. ++.+...|...++-+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            34455555555555666666666665432 2233334333333222 34445566666665543 344555566666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          432 CRSGKIHEAVHFLYELVDSGVTPNI---VCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       432 ~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ...|+.+.|..+|++.+.. +.++.   ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666665543 12221   3566666666666666666666666655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.95  E-value=0.00018  Score=50.87  Aligned_cols=95  Identities=14%  Similarity=0.153  Sum_probs=63.4

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 010342          354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR  433 (512)
Q Consensus       354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  433 (512)
                      +..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            3445556666777777777777776643 3344566667777777777777777777776543 3344566777777777


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 010342          434 SGKIHEAVHFLYELVDS  450 (512)
Q Consensus       434 ~g~~~~a~~~~~~~~~~  450 (512)
                      .|++++|...+....+.
T Consensus        81 ~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          81 LGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHhHHHHHHHHHHHHcc
Confidence            77777777777776553

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.95  E-value=0.00017  Score=64.93  Aligned_cols=124  Identities=10%  Similarity=0.080  Sum_probs=91.8

Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHh
Q 010342          346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV  423 (512)
Q Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  423 (512)
                      +.+.+...+..++..+....+.+.+..++.+....  ....-..|..++++.|...|..+.+..+++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            33556667777777777777788888888777764  2222334556888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 010342          424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL  469 (512)
Q Consensus       424 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  469 (512)
                      ++.|++.+.+.|++..|.++...|...+...++.|+..-+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888888888888888888888887776666666766666666654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00078  Score=56.49  Aligned_cols=112  Identities=12%  Similarity=0.057  Sum_probs=84.1

Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhH
Q 010342          383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTPNIVCY  459 (512)
Q Consensus       383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~  459 (512)
                      +-|...|..|...|...|+.+.|..-|.+..+.. +++...+..+..++..+.   ...++..+|++++... +-|+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            6677888888888888888888888888887764 667777777777766543   3567888888888775 3367777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 010342          460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD  498 (512)
Q Consensus       460 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~  498 (512)
                      ..|...+...|++.+|...|+.|.+.  -|....++.++
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i  267 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI  267 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence            78888888888888888888888874  34444455544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.0018  Score=56.47  Aligned_cols=157  Identities=15%  Similarity=0.044  Sum_probs=86.0

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhH---HHH-------
Q 010342          288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY---NAV-------  357 (512)
Q Consensus       288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l-------  357 (512)
                      ++.-.|+.++|.++--...+..  ..+....-.-..++...++.+.|...|.+.+..   .|+...-   ...       
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~~  252 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEVK  252 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHHH
Confidence            4455566666666665555443  223332222233344556666666666664422   2332111   111       


Q ss_pred             ---HHHHHccCCHHHHHHHHHHHHhC---CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          358 ---LRGLFRLRRVEEAKEVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       358 ---~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                         ..-..+.|++..|.+.|.+.+..   ...++...|.....+..+.|+.++|+.-.++..+.+ +.-...+..-..++
T Consensus       253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~  331 (486)
T KOG0550|consen  253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCH  331 (486)
T ss_pred             HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHH
Confidence               12235677788888888777763   234445556666667777788888887777775432 11111222333445


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 010342          432 CRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       432 ~~~g~~~~a~~~~~~~~~~  450 (512)
                      ...+++++|.+-+++..+.
T Consensus       332 l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  332 LALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            5567778888777777654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.94  E-value=1.5e-05  Score=42.37  Aligned_cols=29  Identities=41%  Similarity=0.781  Sum_probs=19.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          458 CYNVVIDGACKLSMKREAYQILREMRKNG  486 (512)
Q Consensus       458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  486 (512)
                      +|+.++++|++.|++++|.+++++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56666666666666666666666666655

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.93  E-value=0.00011  Score=51.24  Aligned_cols=78  Identities=15%  Similarity=0.300  Sum_probs=58.4

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCC-CCCcchHHHHHHHHhccC--------chhHHHHHHHHHHhCCCCCchhhHHH
Q 010342          144 HMIDSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHG--------GCMRAYQLLEEGIQFGYLPSEHTYKV  214 (512)
Q Consensus       144 ~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~  214 (512)
                      ..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        ..-+.+.+|+.|+..+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            345556666888888888888888888 788888888887776532        24457788888888888888888888


Q ss_pred             HHHHHhc
Q 010342          215 LVEGLCG  221 (512)
Q Consensus       215 l~~~~~~  221 (512)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            8876643

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.93  E-value=1.4e-05  Score=42.51  Aligned_cols=31  Identities=52%  Similarity=1.078  Sum_probs=28.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 010342           30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV   60 (512)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~   60 (512)
                      .+|+.++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3799999999999999999999999998764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.00079  Score=56.13  Aligned_cols=94  Identities=13%  Similarity=0.188  Sum_probs=54.3

Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 010342          362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV  441 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  441 (512)
                      .+.+++.+|...|.+.++.. +-|.+.|..-..+|.+.|.++.|.+-.+..+..+ +....+|..|..+|...|++++|+
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence            44556666666666666643 3455555555666666666666666666665543 334446666666666666666666


Q ss_pred             HHHHHHHHCCCCCChhhH
Q 010342          442 HFLYELVDSGVTPNIVCY  459 (512)
Q Consensus       442 ~~~~~~~~~~~~p~~~~~  459 (512)
                      +.|++.++.  .|+-.+|
T Consensus       170 ~aykKaLel--dP~Ne~~  185 (304)
T KOG0553|consen  170 EAYKKALEL--DPDNESY  185 (304)
T ss_pred             HHHHhhhcc--CCCcHHH
Confidence            666665553  4443333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.87  E-value=0.00069  Score=51.27  Aligned_cols=91  Identities=11%  Similarity=0.005  Sum_probs=47.3

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK  436 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  436 (512)
                      +..-+...|++++|..+|+-+.... +-+..-|-.|..++-..|++++|+..|......+ +.|...+-.+..++...|+
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence            3333445555555555555555433 2333444555555555555555555555555444 3444455555555555555


Q ss_pred             HHHHHHHHHHHHH
Q 010342          437 IHEAVHFLYELVD  449 (512)
Q Consensus       437 ~~~a~~~~~~~~~  449 (512)
                      .+.|.+.|+..+.
T Consensus       119 ~~~A~~aF~~Ai~  131 (157)
T PRK15363        119 VCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.86  E-value=0.0052  Score=53.58  Aligned_cols=171  Identities=13%  Similarity=0.097  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CC--hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL---PN--SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA  105 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  105 (512)
                      .|......|-..+++++|.+.|.+.......   +.  ...|.....++. ..+++.|...+.+                
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~----------------   99 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEK----------------   99 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHH----------------
Confidence            4666677777778888888777776432110   10  112222333332 2355555554444                


Q ss_pred             hHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhc-CChhhHHHHHHHHHH----cCCCC--CcchHH
Q 010342          106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS-GRNHGASRVVYVMRK----RGLTP--SLVSYN  178 (512)
Q Consensus       106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~g~~p--~~~~~~  178 (512)
                          .+..|...|++..|-+.+..               +...|... |+++.|.+.|+...+    .| .+  -..++.
T Consensus       100 ----A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~  159 (282)
T PF14938_consen  100 ----AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLL  159 (282)
T ss_dssp             ----HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred             ----HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHH
Confidence                45556666666666554443               45556566 677777777766543    22 11  123566


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHhCCCC-----Cchh-hHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010342          179 SIVHGLCKHGGCMRAYQLLEEGIQFGYL-----PSEH-TYKVLVEGLCGESDLEKARKVLQFMLSK  238 (512)
Q Consensus       179 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~  238 (512)
                      .+...+.+.|++++|.++|++.......     .+.. .+...+-++...||+..|.+.++.....
T Consensus       160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7777888899999999999988764322     1222 2333444667788999999999988754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.85  E-value=0.0011  Score=62.37  Aligned_cols=143  Identities=15%  Similarity=0.018  Sum_probs=86.0

Q ss_pred             CCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHHhhc
Q 010342          348 SPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--------NQLDEAKRFWDDIVW  414 (512)
Q Consensus       348 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~  414 (512)
                      +.+...|...+++....     ++...|..+|++..+.. |.....+..+..++...        .++..+.+..++...
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            45666666666654332     22557777777777653 22333444443333221        122333444444332


Q ss_pred             C-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH
Q 010342          415 P-SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT  493 (512)
Q Consensus       415 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  493 (512)
                      . ..+.+...+.++.-.+...|++++|...+++..+.+  |+...|..+...+...|+.++|.+.+++...  +.|...|
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt  488 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT  488 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence            2 123445667777666667788888888888888764  5677788888888888888888888888766  4565555


Q ss_pred             HH
Q 010342          494 WR  495 (512)
Q Consensus       494 ~~  495 (512)
                      |.
T Consensus       489 ~~  490 (517)
T PRK10153        489 LY  490 (517)
T ss_pred             HH
Confidence            43

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.85  E-value=0.00049  Score=52.06  Aligned_cols=94  Identities=9%  Similarity=-0.082  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342          389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK  468 (512)
Q Consensus       389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  468 (512)
                      .-.+...+...|++++|.++|+-+...+ +.+..-|..|.-++-..|++++|+..|.......+ -|+..+-.+..++..
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~  115 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence            3444455566777777777777766544 44555566666667677777777777777766653 356666677777777


Q ss_pred             cCCHHHHHHHHHHHHH
Q 010342          469 LSMKREAYQILREMRK  484 (512)
Q Consensus       469 ~g~~~~a~~~~~~m~~  484 (512)
                      .|+.+.|.+-|+..+.
T Consensus       116 lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        116 CDNVCYAIKALKAVVR  131 (157)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            7777777777776654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.84  E-value=2.5e-05  Score=53.63  Aligned_cols=81  Identities=19%  Similarity=0.182  Sum_probs=57.2

Q ss_pred             cCcHHHHHHHHHHHHhCCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342            7 LSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV   85 (512)
Q Consensus         7 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   85 (512)
                      +|+++.|+.+|+++.+..+. |+...+..+..++.+.|++++|..++++ .+.+ +.+......+..++.+.|++++|+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            68899999999999987442 2445566688999999999999999988 3221 1233444455678888888888887


Q ss_pred             HHHH
Q 010342           86 LMFK   89 (512)
Q Consensus        86 ~~~~   89 (512)
                      .+.+
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.84  E-value=3.7e-05  Score=52.77  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=44.3

Q ss_pred             cCCHHHHHHHHHHhhcCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342          399 SNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ  477 (512)
Q Consensus       399 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  477 (512)
                      .|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            35666666666666654321 1333444466667777777777777666 22221 122333445666667777777776


Q ss_pred             HHHH
Q 010342          478 ILRE  481 (512)
Q Consensus       478 ~~~~  481 (512)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.82  E-value=0.00073  Score=60.86  Aligned_cols=93  Identities=12%  Similarity=0.002  Sum_probs=72.5

Q ss_pred             HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010342          321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN  400 (512)
Q Consensus       321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  400 (512)
                      -...+...|++++|+..|.+.+...  +.+...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            3456677888888888888877554  4456677777888888888888888888888764 456667888888888888


Q ss_pred             CHHHHHHHHHHhhcCC
Q 010342          401 QLDEAKRFWDDIVWPS  416 (512)
Q Consensus       401 ~~~~a~~~~~~~~~~~  416 (512)
                      ++++|...|+++++.+
T Consensus        85 ~~~eA~~~~~~al~l~  100 (356)
T PLN03088         85 EYQTAKAALEKGASLA  100 (356)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            8888888888887654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.82  E-value=0.0006  Score=54.24  Aligned_cols=60  Identities=8%  Similarity=-0.062  Sum_probs=25.4

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--ChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      +..+...+...|++++|...|++.......+  ...++..+..++...|++++|...+++..
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3333444444444555555444444321111  11234444444444444444444444444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.81  E-value=0.00092  Score=49.60  Aligned_cols=96  Identities=14%  Similarity=0.059  Sum_probs=38.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCC-ChhhHHHHHHHH
Q 010342          284 TVINGFCKMGRIEEALKVLNDMVAGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGL  361 (512)
Q Consensus       284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~  361 (512)
                      .+...+.+.|++++|...|..+...... +.....+..+..++...|+++.|...+.+.....+-.+ ....+..+..++
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            3344444445555555555554432210 00122333344444444555555554444332221111 122333344444


Q ss_pred             HccCCHHHHHHHHHHHHh
Q 010342          362 FRLRRVEEAKEVFNCMLG  379 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~  379 (512)
                      .+.|+.++|...++++.+
T Consensus        87 ~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        87 QELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHhCChHHHHHHHHHHHH
Confidence            444444444444444444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.80  E-value=0.0015  Score=52.17  Aligned_cols=84  Identities=11%  Similarity=-0.028  Sum_probs=40.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                      +..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+++..... +.+...+..+..++
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~  116 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            44444455555556666555555554321111  2344555555555555555555555555432 22333444444455


Q ss_pred             HhcCCHH
Q 010342          432 CRSGKIH  438 (512)
Q Consensus       432 ~~~g~~~  438 (512)
                      ...|+..
T Consensus       117 ~~~g~~~  123 (172)
T PRK02603        117 HKRGEKA  123 (172)
T ss_pred             HHcCChH
Confidence            4444433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.79  E-value=0.015  Score=54.57  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342          315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG  379 (512)
Q Consensus       315 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  379 (512)
                      ...|-.+.+-....|..+.|+..--..-.-..+-|-...|+.+.-+.+..+.+...-+.|-++..
T Consensus      1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence            34444555555666777777665433222223345555666555555555555544444444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.79  E-value=5.9e-05  Score=49.31  Aligned_cols=64  Identities=20%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV   71 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~   71 (512)
                      ++.|++++|++.|+.+.+..+. +...+..++.+|.+.|++++|..+++++...  .|+...|..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence            5789999999999999988444 7888889999999999999999999999886  46655554443

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.76  E-value=0.0096  Score=50.29  Aligned_cols=64  Identities=9%  Similarity=0.050  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hH---HHHHHHHHhcCChhhHHHHHHHHHHHhhhc
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL-TY---SVLVRGVLRTRDVERANVLMFKLWERMKEE   97 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   97 (512)
                      +-.....+...|++++|.+.|+++....  |+.. ..   -.+..++.+.++++.|...++++++..|..
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~  102 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH  102 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence            3344445556667777777777766642  3221 11   234455566666666666666666655543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.75  E-value=0.0027  Score=53.59  Aligned_cols=55  Identities=15%  Similarity=0.089  Sum_probs=43.8

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHh---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVS---YTTLIHGYCRTGEMDVAYKVFDEMRHCG   59 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~   59 (512)
                      +.+.|++++|++.|+.+.+.-+.+ ..+   .-.++.++.+.+++++|...+++..+..
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            356799999999999999874332 222   2456778899999999999999998864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.74  E-value=0.0023  Score=51.06  Aligned_cols=88  Identities=9%  Similarity=-0.034  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 010342          316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID  394 (512)
Q Consensus       316 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  394 (512)
                      ..+..+...+...|++++|...|.+.+....-.++ ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            33444455555555666665555554432211111 2344455555555566666665555555532 223334444445


Q ss_pred             HHHhcCCHHH
Q 010342          395 GLCESNQLDE  404 (512)
Q Consensus       395 ~~~~~g~~~~  404 (512)
                      ++...|+...
T Consensus       115 ~~~~~g~~~~  124 (172)
T PRK02603        115 IYHKRGEKAE  124 (172)
T ss_pred             HHHHcCChHh
Confidence            5555444333

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.74  E-value=0.012  Score=45.54  Aligned_cols=127  Identities=12%  Similarity=0.160  Sum_probs=57.6

Q ss_pred             CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCChHhHHH
Q 010342          313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-VADSTTYAI  391 (512)
Q Consensus       313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~  391 (512)
                      |+......+..+..+.|+..+|...|.+.+ ..-+..|......+.++....+++..|...++++-+... .-++.+.-.
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            444444445555555555555555555533 222233444444555555555555555555555544220 001222334


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342          392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH  442 (512)
Q Consensus       392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  442 (512)
                      +.+.+...|....|+.-|+.....  .|+...-......+.++|+.+++..
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence            445555555555555555555432  2333333333334444554444433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0026  Score=53.47  Aligned_cols=113  Identities=12%  Similarity=0.070  Sum_probs=86.2

Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCHHhH
Q 010342          348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIHDNYVY  424 (512)
Q Consensus       348 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~  424 (512)
                      +-|...|..|..+|...|+++.|..-|....+.. ++++..+..+..++....   ...++..++++++..+ +.|..+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            5677888888899999999999999998888853 567777777776665443   4567888999988765 6677788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010342          425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID  464 (512)
Q Consensus       425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  464 (512)
                      ..|...+...|++.+|...|+.|.+..  |....+..++.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            888888889999999999999998874  33334444443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.72  E-value=0.00083  Score=58.23  Aligned_cols=128  Identities=11%  Similarity=0.075  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH-HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG-LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR  359 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  359 (512)
                      +|..+++...+.+..+.|..+|.+..+.+.  .+...|...... +...++.+.|.++|+..++..  +.+...|...+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~   78 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence            344444555555555555555555553332  222222222222 112334444555555544332  334444445555


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          360 GLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       360 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      .+...++.+.|..+|++.... ++++.   ..|...+..-.+.|+++.+.++.+++.
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~  134 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE  134 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            555555555555555555543 12211   245555555555555555555555443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.00077  Score=56.22  Aligned_cols=101  Identities=18%  Similarity=0.127  Sum_probs=82.9

Q ss_pred             HHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 010342          323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL  402 (512)
Q Consensus       323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  402 (512)
                      .-+.+.+++.+|+..|.+.+.-.  +-|.+-|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence            34778999999999999987544  5567778888999999999999999999888754 33456899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342          403 DEAKRFWDDIVWPSNIHDNYVYAAMI  428 (512)
Q Consensus       403 ~~a~~~~~~~~~~~~~~~~~~~~~l~  428 (512)
                      ++|.+.|++.++.  .|+..+|..=+
T Consensus       166 ~~A~~aykKaLel--dP~Ne~~K~nL  189 (304)
T KOG0553|consen  166 EEAIEAYKKALEL--DPDNESYKSNL  189 (304)
T ss_pred             HHHHHHHHhhhcc--CCCcHHHHHHH
Confidence            9999999999774  56666654433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.67  E-value=0.00026  Score=45.67  Aligned_cols=56  Identities=13%  Similarity=0.108  Sum_probs=31.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ...+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...++++.+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555566666666666665553 22455555566666666666666666666554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.64  E-value=0.0015  Score=51.98  Aligned_cols=115  Identities=9%  Similarity=-0.012  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHH-hCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHHhcCCHHHHHHH
Q 010342          367 VEEAKEVFNCML-GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAVHF  443 (512)
Q Consensus       367 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~  443 (512)
                      +..+...+..+. ..+..-....+..+...+...|++++|...+++.......+  ...++..+...+...|++++|.+.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444444443 22222234567778888889999999999999997653222  235788899999999999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 010342          444 LYELVDSGVTPNIVCYNVVIDGAC-------KLSMKREAYQILREM  482 (512)
Q Consensus       444 ~~~~~~~~~~p~~~~~~~l~~~~~-------~~g~~~~a~~~~~~m  482 (512)
                      +++..... +.....+..+...+.       ..|++++|...+++.
T Consensus        95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033         95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            99998763 224556666776776       788888666655544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.62  E-value=0.00021  Score=46.69  Aligned_cols=63  Identities=21%  Similarity=0.270  Sum_probs=38.4

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342          432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL  497 (512)
Q Consensus       432 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  497 (512)
                      ...|++++|.+.|+++.+..+. +...+..+..+|.+.|++++|.++++++...  .|+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            3456777777777777665322 5556666777777777777777777776653  4554444433

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.58  E-value=0.046  Score=48.13  Aligned_cols=109  Identities=18%  Similarity=0.237  Sum_probs=81.6

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                      .+.+..+.-+...|+...|.++-.+..    .|+..-|...+.+++..+++++-.++...      +.++.-|..++.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            456666777788888888888866653    47888888899999999999888776542      22346788899999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR  480 (512)
Q Consensus       432 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  480 (512)
                      .+.|+..+|..++.++          .+..-+..|.+.|++.+|.+..-
T Consensus       248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~  286 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF  286 (319)
T ss_pred             HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999998888662          22456677788888888876543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.56  E-value=0.0008  Score=53.49  Aligned_cols=91  Identities=14%  Similarity=0.250  Sum_probs=41.7

Q ss_pred             ChHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc------------CChhhHHHHHHHH
Q 010342           28 NVVSYTTLIHGYCR-----TGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT------------RDVERANVLMFKL   90 (512)
Q Consensus        28 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~   90 (512)
                      +-.+|..++..|.+     .|..+=....+..|.+-|+..|..+|+.|+..+=+.            ..+..-.+...++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            44445555554442     244554555555555555555555555555443221            1222333333344


Q ss_pred             HHHhhhcCCCCcchHhHHHHHHHHHccCC
Q 010342           91 WERMKEEEDLSVNNAAFANLVDSLCREGY  119 (512)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  119 (512)
                      +++|... ++-|+..++..|++.+.+.+.
T Consensus       126 L~qME~~-gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENN-GVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence            4444433 555555555555555544443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.55  E-value=0.00056  Score=44.10  Aligned_cols=58  Identities=14%  Similarity=0.217  Sum_probs=42.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +...+...|++++|...|+++++.. +.+...+..+..++...|++++|...|+++++.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456677788888888888887665 556667777778888888888888888777764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.021  Score=50.18  Aligned_cols=196  Identities=13%  Similarity=0.086  Sum_probs=120.8

Q ss_pred             HHHHHHHHhhCCCCCCcHHHHHHH-HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH--HHHccCCHHHHHHHH
Q 010342          298 ALKVLNDMVAGKFCAPDAVTFTTI-IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR--GLFRLRRVEEAKEVF  374 (512)
Q Consensus       298 a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~  374 (512)
                      ++..++........+|.-.++..+ ..++.-.+++++|...-...++.....    .+...++  ++.-.++.+.+...|
T Consensus       151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n----~~al~vrg~~~yy~~~~~ka~~hf  226 (486)
T KOG0550|consen  151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN----AEALYVRGLCLYYNDNADKAINHF  226 (486)
T ss_pred             hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch----hHHHHhcccccccccchHHHHHHH
Confidence            333344433333223433444433 345667889998888777766544222    2222332  334577889999999


Q ss_pred             HHHHhCCCCCChHhH---HHH----------HHHHHhcCCHHHHHHHHHHhhcCC---CCCCHHhHHHHHHHHHhcCCHH
Q 010342          375 NCMLGIGVVADSTTY---AIV----------IDGLCESNQLDEAKRFWDDIVWPS---NIHDNYVYAAMIKGLCRSGKIH  438 (512)
Q Consensus       375 ~~~~~~~~~~~~~~~---~~l----------~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~  438 (512)
                      ++.+..+  |+...-   ...          .+-..+.|++..|.+.+.+.+..+   ..++...|.....+..+.|+..
T Consensus       227 ~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~  304 (486)
T KOG0550|consen  227 QQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR  304 (486)
T ss_pred             hhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch
Confidence            9988754  443321   111          233467899999999999997543   3456667777788888999999


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhc
Q 010342          439 EAVHFLYELVDSGVTPNIVCYNVV--IDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILDKLHG  502 (512)
Q Consensus       439 ~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~  502 (512)
                      +|+.--++..+.+   +..+...+  ..++...++|++|.+-++...+....+ +..++.-...++.
T Consensus       305 eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  305 EAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK  368 (486)
T ss_pred             hhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence            9999888877642   22333333  344556889999999999987643332 2344444444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.52  E-value=0.0061  Score=44.50  Aligned_cols=92  Identities=21%  Similarity=0.208  Sum_probs=47.3

Q ss_pred             HHHHHccCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHhh
Q 010342          251 LRALCLIKNPTELLNVLVFMLQTQCQPD--VITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-APDAVTFTTIIFGLLN  327 (512)
Q Consensus       251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~  327 (512)
                      ..++-..|+.++|+.+|+.....|....  ...+-.+...+...|++++|..+|++....... .-+......+..++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            3344445555555555555555554332  223444555666667777777777666654210 0012222223335556


Q ss_pred             cCCHHHHHHHHHhhc
Q 010342          328 VGRIQEALNLLYQVM  342 (512)
Q Consensus       328 ~~~~~~a~~~~~~~~  342 (512)
                      .|+.++|+.++-..+
T Consensus        88 ~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   88 LGRPKEALEWLLEAL  102 (120)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            667777766665543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.52  E-value=0.00049  Score=45.03  Aligned_cols=63  Identities=16%  Similarity=0.135  Sum_probs=38.4

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 010342          421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS-MKREAYQILREMRK  484 (512)
Q Consensus       421 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~  484 (512)
                      ..+|..+...+...|++++|+..|.+.++.+ +.+...|..+..++...| ++++|++.+++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            4455666666666666666666666666653 224556666666666666 56666666666554

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.51  E-value=0.011  Score=55.85  Aligned_cols=66  Identities=14%  Similarity=-0.022  Sum_probs=46.4

Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +.++..|..+.-.....|++++|...+++++..+  |+...|..+...+...|+.++|.+.+++....
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3445566666655666677777777777777654  46667777777777777777777777777665

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.49  E-value=0.0019  Score=51.45  Aligned_cols=99  Identities=16%  Similarity=0.183  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhCCCCCChHhHHHHHHHHHh-----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC---------
Q 010342          370 AKEVFNCMLGIGVVADSTTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG---------  435 (512)
Q Consensus       370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------  435 (512)
                      ....|+....  -..+..+|..+++.|.+     .|..+=....+..|.+-|+..|..+|+.|++.+=+..         
T Consensus        33 ~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~  110 (228)
T PF06239_consen   33 HEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA  110 (228)
T ss_pred             hHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence            3444444422  25677888888888865     4677777788888888888889999999988875421         


Q ss_pred             -------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010342          436 -------KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS  470 (512)
Q Consensus       436 -------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  470 (512)
                             +-+-|++++++|...|+-||..++..++..+.+.+
T Consensus       111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence                   22346666666666666666666666666665444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.46  E-value=0.031  Score=43.30  Aligned_cols=131  Identities=17%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHH
Q 010342          276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN  355 (512)
Q Consensus       276 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  355 (512)
                      .|+...-..|..+..+.|+..+|...|.+....- ...|......+.++....+++..|...+++.++...-..++.+..
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            3444444555555666666666666666555422 244555555555555566666666666655554332222333444


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 010342          356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW  409 (512)
Q Consensus       356 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  409 (512)
                      .+.+.+...|.+.+|+..|+.....  -|+...-......+.+.|+.+++..-+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence            4555555566666666666655553  233333333333445555554444333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.45  E-value=0.00056  Score=44.77  Aligned_cols=65  Identities=9%  Similarity=0.130  Sum_probs=47.7

Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 010342          385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHFLYELVDS  450 (512)
Q Consensus       385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~  450 (512)
                      ++.+|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.+++.++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            34567777777777888888888888777664 556667777777787777 678888877777654

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.41  E-value=0.0077  Score=46.56  Aligned_cols=74  Identities=16%  Similarity=0.303  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCChHHHHHH
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVTWRIL  497 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~l  497 (512)
                      +...++..+...|++++|....+.+.... +.+...|..++.++...|+..+|.+.|+++.     +.|+.|+..+-...
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~  142 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY  142 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence            56667778888999999999999999875 4478899999999999999999999998874     45999988775543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.014  Score=47.86  Aligned_cols=136  Identities=11%  Similarity=0.034  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV  111 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~  111 (512)
                      .+.++..+...+.+.-...++.+..+...+.++...+.+++.-.+.||.+.|...++++-+....-.+...+..+.....
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            35566666667777777777777777655556667777777777778877777766655443333333333333333334


Q ss_pred             HHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010342          112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR  168 (512)
Q Consensus       112 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  168 (512)
                      ..+.-.+++.+|...+.++...+. .++..-|.-.-+..-.|+..+|.+.++.+++.
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            445556667777777766665543 23333333333344456666677777666665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.36  E-value=0.014  Score=42.65  Aligned_cols=53  Identities=21%  Similarity=0.240  Sum_probs=24.3

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          361 LFRLRRVEEAKEVFNCMLGIGVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      +-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..++++..
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~   65 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL   65 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555555555555555443322  1123334444445555555555555444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.32  E-value=0.0023  Score=42.41  Aligned_cols=63  Identities=16%  Similarity=0.092  Sum_probs=39.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 010342          429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW  494 (512)
Q Consensus       429 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  494 (512)
                      ..|.+.+++++|.++++.++..+ +.+...|......+.+.|++++|.+.+++..+  ..|+..+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~   65 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDA   65 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHH
Confidence            45566667777777777766654 22555666666666777777777777777665  34554443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.31  E-value=0.0027  Score=54.01  Aligned_cols=103  Identities=11%  Similarity=0.023  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA  106 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (512)
                      .|......+.+.|++++|...|+.+.+..  |+.    ..+..+..++...|+++.|...+.++++..|..   ......
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~dA  219 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAADA  219 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhHH
Confidence            34444444455666667766666666642  332    355556666666677777766666666555432   223344


Q ss_pred             HHHHHHHHHccCChhHHHHHHHhcCCCCCCCc
Q 010342          107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNE  138 (512)
Q Consensus       107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  138 (512)
                      +-.+...+...|+.++|..+|+.+.+..+...
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            44556666666777777776666655544433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.25  E-value=0.044  Score=51.10  Aligned_cols=268  Identities=16%  Similarity=0.138  Sum_probs=132.3

Q ss_pred             CCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 010342          172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL  251 (512)
Q Consensus       172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  251 (512)
                      |....+.+-+..|...|.+++|.++-      +.-....-|.-+.......-+++-|.+.|.+....             
T Consensus       554 ~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-------------  614 (1081)
T KOG1538|consen  554 AVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL-------------  614 (1081)
T ss_pred             cccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence            34444555556666777777666542      11122233444444444445666666655554321             


Q ss_pred             HHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHH-----HHHHHh
Q 010342          252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT-----IIFGLL  326 (512)
Q Consensus       252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~  326 (512)
                             .+-+...-++++.+.|-.|+...   +...++-.|.+.+|-++|.+--..+   .-...|+-     ..+-+.
T Consensus       615 -------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en---RAlEmyTDlRMFD~aQE~~  681 (1081)
T KOG1538|consen  615 -------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN---RALEMYTDLRMFDYAQEFL  681 (1081)
T ss_pred             -------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh---hHHHHHHHHHHHHHHHHHh
Confidence                   12233445566666666666543   3344555667777777765432211   11111111     123334


Q ss_pred             hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH------HHhCCC---CCChHhHHHHHHHHH
Q 010342          327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC------MLGIGV---VADSTTYAIVIDGLC  397 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~  397 (512)
                      ..|..++-..+.++-. +  ..-+..-=.+....+...|+.++|..+.-+      +.+.+.   ..+..+...+..-+.
T Consensus       682 ~~g~~~eKKmL~RKRA-~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk  758 (1081)
T KOG1538|consen  682 GSGDPKEKKMLIRKRA-D--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLK  758 (1081)
T ss_pred             hcCChHHHHHHHHHHH-H--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHh
Confidence            4444444333332210 0  000100111223334455555555443211      111111   223444555555555


Q ss_pred             hcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-----------HHHHHHHH
Q 010342          398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC-----------YNVVIDGA  466 (512)
Q Consensus       398 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-----------~~~l~~~~  466 (512)
                      +...+.-|-++|..+-+         ...+++.....+++.+|..+-++.-+.  .|+...           |.-.-.+|
T Consensus       759 ~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAf  827 (1081)
T KOG1538|consen  759 KLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAF  827 (1081)
T ss_pred             hccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHH
Confidence            66667777777777632         234666777778888887776654432  233221           33445678


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 010342          467 CKLSMKREAYQILREMRKN  485 (512)
Q Consensus       467 ~~~g~~~~a~~~~~~m~~~  485 (512)
                      .++|+..+|.++++++...
T Consensus       828 hkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  828 HKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             HHhcchHHHHHHHHHhhhh
Confidence            8888888888888887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.25  E-value=0.04  Score=45.32  Aligned_cols=68  Identities=12%  Similarity=0.046  Sum_probs=38.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhc
Q 010342           30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE   97 (512)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   97 (512)
                      ...-.....+...|++.+|...|+++.....  +--......++.++.+.|+++.|...+.++++..|..
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~   75 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS   75 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            3444455556677777777777777766421  1112234455666777777777777777776665554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.22  E-value=0.0094  Score=50.78  Aligned_cols=95  Identities=13%  Similarity=0.004  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHH
Q 010342          389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD---NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV--TPNIVCYNVVI  463 (512)
Q Consensus       389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~  463 (512)
                      |...+..+.+.|++++|...|+.+++.. +.+   ...+..+..+|...|++++|...|+.+++.-+  +.....+..+.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            3333333344455555555555555432 111   13444555555556666666666655554311  01122333344


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 010342          464 DGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       464 ~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ..+...|++++|.++++.+.+
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            455556666666666665554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.21  E-value=0.0024  Score=55.64  Aligned_cols=273  Identities=15%  Similarity=0.107  Sum_probs=157.5

Q ss_pred             hHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChhhHHHHHHHHH---HHhhhcCCCC
Q 010342           31 SYTTLIH--GYCRTGEMDVAYKVFDEMRHCGVLPNSL----TYSVLVRGVLRTRDVERANVLMFKLW---ERMKEEEDLS  101 (512)
Q Consensus        31 ~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~  101 (512)
                      .+...+.  -+++.|+....+.+|+...+.|. -|..    .|+.|..+|.-.+++++|.+.+..=+   +.+....   
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl---   92 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL---   92 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh---
Confidence            4444333  37889999999999999988773 3443    45666778888888888887653211   1111111   


Q ss_pred             cchHhHHHHHHHHHccCChhHHHHHHHhcCC----CC-CCCcchhHHHHHHHHHhcCC--------------------hh
Q 010342          102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQ----GK-SVNEEFACGHMIDSLCRSGR--------------------NH  156 (512)
Q Consensus       102 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~--------------------~~  156 (512)
                      -...+-..|...+--.|.+++|.-...+-..    .| ......++..+..+|...|+                    ++
T Consensus        93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~  172 (639)
T KOG1130|consen   93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE  172 (639)
T ss_pred             ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence            1111122255555566777776544332111    01 01112233335555544332                    23


Q ss_pred             hHHHHHHHH----HHcCCC-CCcchHHHHHHHHhccCchhHHHHHHHHHH----hCCCCC-chhhHHHHHHHHhccCCHH
Q 010342          157 GASRVVYVM----RKRGLT-PSLVSYNSIVHGLCKHGGCMRAYQLLEEGI----QFGYLP-SEHTYKVLVEGLCGESDLE  226 (512)
Q Consensus       157 ~a~~~~~~~----~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~~  226 (512)
                      .|.+.|.+-    .+.|-. .-...|..|...|.-.|+++.|+...+.-.    +.|-.. ....+..+..+++-.|+++
T Consensus       173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe  252 (639)
T KOG1130|consen  173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE  252 (639)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence            344444332    122211 123456677777777888998887665432    223222 3457788888888899999


Q ss_pred             HHHHHHHHHHhC-----CCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhcCCHH
Q 010342          227 KARKVLQFMLSK-----KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-----QCQPDVITLNTVINGFCKMGRIE  296 (512)
Q Consensus       227 ~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~  296 (512)
                      .|.+.|+.....     +..........+...|.-..++++|+.++..-+..     ...-....+-+|..+|...|..+
T Consensus       253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~  332 (639)
T KOG1130|consen  253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR  332 (639)
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence            999888765321     12223445666777777777888888776553321     11224566778888888888888


Q ss_pred             HHHHHHHHHhh
Q 010342          297 EALKVLNDMVA  307 (512)
Q Consensus       297 ~a~~~~~~~~~  307 (512)
                      +|+...+...+
T Consensus       333 kAl~fae~hl~  343 (639)
T KOG1130|consen  333 KALYFAELHLR  343 (639)
T ss_pred             HHHHHHHHHHH
Confidence            88877765543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.1  Score=43.03  Aligned_cols=140  Identities=15%  Similarity=0.111  Sum_probs=101.6

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH----
Q 010342          317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV----  392 (512)
Q Consensus       317 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----  392 (512)
                      ..+.++..+.-.+.+.-.++.+.+.++ ..-+.++.....+++.-.+.||.+.|...|++..+..-..+..+.+.+    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            345667777778888888888888664 444567788888999999999999999999987764334444444333    


Q ss_pred             -HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 010342          393 -IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN  460 (512)
Q Consensus       393 -~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  460 (512)
                       ...|.-.+++..|...+.++...+ +.|....|.-.-+....|+..+|++.+..|....  |...+-+
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e  323 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE  323 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence             345566778889999998888765 4555566666666667899999999999998864  4443433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.14  E-value=0.0054  Score=53.60  Aligned_cols=286  Identities=13%  Similarity=0.075  Sum_probs=147.5

Q ss_pred             HHHhccCchhHHHHHHHHHHhCCCCCchh----hHHHHHHHHhccCCHHHHHHHHHHHHh----CCC-CCCcccHHHHHH
Q 010342          182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEH----TYKVLVEGLCGESDLEKARKVLQFMLS----KKD-VDRTRICNIYLR  252 (512)
Q Consensus       182 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~  252 (512)
                      .-+++.|+......+|+.+++.| .-|..    .|..|..+|.-.+|+++|+++...=..    .+. .-.......+..
T Consensus        25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            34778899999999999998877 44433    466667777788888888877643110    011 111222233333


Q ss_pred             HHHccCChhhHHHHHHHH----HhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhh
Q 010342          253 ALCLIKNPTELLNVLVFM----LQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN  327 (512)
Q Consensus       253 ~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  327 (512)
                      .+--.|.+++|.-....-    .+.|-+ .....+..+...|...|+.-....    -.+.+  ..+...-.        
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g--~f~~ev~~--------  169 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKG--AFNAEVTS--------  169 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcc--cccHHHHH--------
Confidence            333344444444322111    111100 011122222333332222100000    00000  00000000        


Q ss_pred             cCCHHHHHHHHHhhcc---cCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHH----hCCCCC-ChHhHHHHHHHHHh
Q 010342          328 VGRIQEALNLLYQVMP---QRGY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCML----GIGVVA-DSTTYAIVIDGLCE  398 (512)
Q Consensus       328 ~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~  398 (512)
                        .++.|.+.|.+-++   ..|- -..-..|..|...|.-.|+++.|+...+.-.    +.|-.. ....+..+.++++-
T Consensus       170 --al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif  247 (639)
T KOG1130|consen  170 --ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF  247 (639)
T ss_pred             --HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence              12233333332111   1000 0112345566666667788888887665433    233221 23467778888888


Q ss_pred             cCCHHHHHHHHHHhh----cCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCChhhHHHHHHHHHh
Q 010342          399 SNQLDEAKRFWDDIV----WPSN-IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD----SG-VTPNIVCYNVVIDGACK  468 (512)
Q Consensus       399 ~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~  468 (512)
                      .|+++.|.+.|+...    +.|. .....+..+|...|.-..++++|+.++.+-..    .+ ..-....+.+|..++..
T Consensus       248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            899999988887653    2221 11233455677788777888888888765332    11 12244567788888988


Q ss_pred             cCCHHHHHHHHHHHHH
Q 010342          469 LSMKREAYQILREMRK  484 (512)
Q Consensus       469 ~g~~~~a~~~~~~m~~  484 (512)
                      .|..++|+.+.+.-++
T Consensus       328 lg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  328 LGEHRKALYFAELHLR  343 (639)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            9999988887766543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.12  E-value=0.16  Score=44.53  Aligned_cols=311  Identities=14%  Similarity=0.080  Sum_probs=197.4

Q ss_pred             hhHHHHHHHHHHcCCCCCcchHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHH--hccCCHHHHHHH
Q 010342          156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCK--HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLEKARKV  231 (512)
Q Consensus       156 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~  231 (512)
                      ..+.+.|..-+.      ...|..|-.++..  .|+-..|.++-.+..+. +..|...+..++.+.  .-.|+++.|.+-
T Consensus        70 ~t~~Ryfr~rKR------drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~k  142 (531)
T COG3898          70 YTARRYFRERKR------DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKK  142 (531)
T ss_pred             HHHHHHHHHHHh------hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHH
Confidence            344455544443      2457777666654  67777777776665432 233444444455443  457999999999


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010342          232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC  311 (512)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  311 (512)
                      |+.|.... ....--+..+.-...+.|..+.|...-...-..-.. -...+...+...+..|+|+.|+++++.-.....+
T Consensus       143 feAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi  220 (531)
T COG3898         143 FEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVI  220 (531)
T ss_pred             HHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence            99997421 111112333334445688888888888777665433 3456778888999999999999999988876655


Q ss_pred             CCcHHHHH--HHHHHHh---hcCCHHHHHHHHHhhcccCCCCCChhhH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 010342          312 APDAVTFT--TIIFGLL---NVGRIQEALNLLYQVMPQRGYSPGIVTY-NAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD  385 (512)
Q Consensus       312 ~~~~~~~~--~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  385 (512)
                      .++..-..  .|+.+-.   -..+...|.+.-.+   ...+.||..-- .....++.+.|+..++-.+++.+-+..  |.
T Consensus       221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~---a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PH  295 (531)
T COG3898         221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALE---ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PH  295 (531)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH---HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CC
Confidence            66654333  3333322   13345555554433   44556664432 234577889999999999999999864  44


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 010342          386 STTYAIVIDGLCESNQLDEAKRFWDDIVW--PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI  463 (512)
Q Consensus       386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  463 (512)
                      +.+...  ..+.+.|+.  +..-+++..+  .-.+.+......+..+-...|++..|..--+...+.  .|....|..|.
T Consensus       296 P~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlA  369 (531)
T COG3898         296 PDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLA  369 (531)
T ss_pred             hHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHH
Confidence            444332  234455542  2222222211  111446667777888888899999888777666553  77888888877


Q ss_pred             HHHHh-cCCHHHHHHHHHHHHHCC
Q 010342          464 DGACK-LSMKREAYQILREMRKNG  486 (512)
Q Consensus       464 ~~~~~-~g~~~~a~~~~~~m~~~~  486 (512)
                      +.-.. .|+-.++..++.+..+.-
T Consensus       370 dIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         370 DIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             HHHhhccCchHHHHHHHHHHhcCC
Confidence            76654 499999999998888643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.07  E-value=0.18  Score=44.25  Aligned_cols=297  Identities=12%  Similarity=0.053  Sum_probs=180.6

Q ss_pred             hHHHHHHHHHh--cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh--ccCchhHHHHHHHHHHhCCCCCchh--hHHH
Q 010342          141 ACGHMIDSLCR--SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC--KHGGCMRAYQLLEEGIQFGYLPSEH--TYKV  214 (512)
Q Consensus       141 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~  214 (512)
                      .|.+|-.++..  .|+-..|.+.-.+..+. +.-|......++.+-.  -.|+++.|.+-|+.|..   .|...  -+..
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg  159 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG  159 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence            56666666554  46666676666554322 2336666666665544  47899999999999875   33322  2233


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcC-CCCChhh--HHHHHHHHHh
Q 010342          215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVIT--LNTVINGFCK  291 (512)
Q Consensus       215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~~  291 (512)
                      |.-..-+.|+.+.|..+-+..-.. -+.-.......+...|..|+++.|+++++.-.... +.++..-  -..|+.+-..
T Consensus       160 LyleAqr~GareaAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~  238 (531)
T COG3898         160 LYLEAQRLGAREAARHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM  238 (531)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence            333445778888888888777543 33345677888888999999999999988776543 2333322  2233333221


Q ss_pred             ---cCCHHHHHHHHHHHhhCCCCCCcHHH-HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCH
Q 010342          292 ---MGRIEEALKVLNDMVAGKFCAPDAVT-FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV  367 (512)
Q Consensus       292 ---~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  367 (512)
                         ..+...|...-.+..+.   .|+..- -..-..++.+.|+..++-.+++.+-+.   .|.+..+...  .+.+.|+.
T Consensus       239 s~ldadp~~Ar~~A~~a~KL---~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt  310 (531)
T COG3898         239 SLLDADPASARDDALEANKL---APDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT  310 (531)
T ss_pred             HHhcCChHHHHHHHHHHhhc---CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc
Confidence               13455566555555443   344332 233456788899999998888875533   4555544333  33455553


Q ss_pred             HHHHHHHHHHHh-CCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHH
Q 010342          368 EEAKEVFNCMLG-IGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR-SGKIHEAVHFL  444 (512)
Q Consensus       368 ~~a~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~  444 (512)
                      .  ..-+++..+ ..+ +.+.++...+..+-...|++..|..--+....  ..|....|..|.+.-.. .||-.++...+
T Consensus       311 a--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wl  386 (531)
T COG3898         311 A--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWL  386 (531)
T ss_pred             H--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence            3  222222222 012 33455666777777888888888777776654  36777777777776544 48888888888


Q ss_pred             HHHHHCCCCC
Q 010342          445 YELVDSGVTP  454 (512)
Q Consensus       445 ~~~~~~~~~p  454 (512)
                      .+.++..-.|
T Consensus       387 Aqav~APrdP  396 (531)
T COG3898         387 AQAVKAPRDP  396 (531)
T ss_pred             HHHhcCCCCC
Confidence            8887754333

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.01  E-value=0.097  Score=46.63  Aligned_cols=80  Identities=13%  Similarity=0.040  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHhcCCCC---CCCcchhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCCcchHHH
Q 010342          106 AFANLVDSLCREGYVNEVFRIAEDMPQGK---SVNEEFACGHMIDSLCR---SGRNHGASRVVYVMRKRGLTPSLVSYNS  179 (512)
Q Consensus       106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~g~~p~~~~~~~  179 (512)
                      +...++-+|....+++..+++.+.+....   .......-....-++-+   .|+.++|++++..+......+++.+|..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            33345556777777777777777776542   11112222233444555   6777777777777555555566777776


Q ss_pred             HHHHHh
Q 010342          180 IVHGLC  185 (512)
Q Consensus       180 l~~~~~  185 (512)
                      +.+.|-
T Consensus       223 ~GRIyK  228 (374)
T PF13281_consen  223 LGRIYK  228 (374)
T ss_pred             HHHHHH
Confidence            666553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.01  E-value=0.14  Score=48.00  Aligned_cols=89  Identities=13%  Similarity=0.139  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhh-----
Q 010342          279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT-----  353 (512)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----  353 (512)
                      ..+...+...+.+...+..|-++|..|-.          ...+++.....+++++|..+-++ .  ....||...     
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~-h--Pe~~~dVy~pyaqw  813 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEK-H--PEFKDDVYMPYAQW  813 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhh-C--ccccccccchHHHH
Confidence            33444444445555667777788877653          23456777888888888887655 2  223444321     


Q ss_pred             ------HHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342          354 ------YNAVLRGLFRLRRVEEAKEVFNCMLGI  380 (512)
Q Consensus       354 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~  380 (512)
                            |...-.+|.+.|+..+|..+++++...
T Consensus       814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence                  233345667777777777777777654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.00  E-value=0.006  Score=40.34  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=37.7

Q ss_pred             HHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      ..|.+.+++++|.++++.++..+ +.+...+.....++...|++++|.+.|++..+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45666677777777777776654 445566666667777777777777777777665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.97  E-value=0.0084  Score=46.35  Aligned_cols=100  Identities=15%  Similarity=0.211  Sum_probs=70.5

Q ss_pred             ccCcHHHHHHHHHHHHhC--C-CCCChH------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 010342            6 GLSRVGEAHKLFFDMKSR--G-HVPNVV------------------SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS   64 (512)
Q Consensus         6 ~~g~~~~A~~~~~~~~~~--~-~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~   64 (512)
                      ..|+.+.+...++++...  | +-|+..                  +...++..+...|++++|..+.+++.... +.|.
T Consensus        18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E   96 (146)
T PF03704_consen   18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PYDE   96 (146)
T ss_dssp             HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-H
T ss_pred             HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCH
Confidence            456778888888877765  2 122211                  23556666778999999999999998864 4577


Q ss_pred             hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342           65 LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA  106 (512)
Q Consensus        65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (512)
                      ..|..+|.++...|+...|.+.|.++.+.+.+.-++.|+..+
T Consensus        97 ~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   97 EAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            889999999999999999999999998888887788888654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.95  E-value=0.46  Score=46.82  Aligned_cols=445  Identities=13%  Similarity=0.088  Sum_probs=213.1

Q ss_pred             ChHhHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCC--hhhHHHHHHHHH-hcCChhhHHHHHHHHHHHhhhcCCCC-c
Q 010342           28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMR-HCGVLPN--SLTYSVLVRGVL-RTRDVERANVLMFKLWERMKEEEDLS-V  102 (512)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-~  102 (512)
                      +...|..||.         .|+..++-+. +..++|.  ..++..+...+. ...+.+.|+..+.+.+...... +.. .
T Consensus        29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~~d~   98 (608)
T PF10345_consen   29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RLTDL   98 (608)
T ss_pred             hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHH
Confidence            3445666655         4556666665 3333342  234555556555 5778888888887766554431 211 1


Q ss_pred             chHhHHHHHHHHHccCChhHHHHHHHhcCCC----CCCCcchhHHHH-HHHHHhcCChhhHHHHHHHHHHcC---CCCCc
Q 010342          103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQG----KSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRG---LTPSL  174 (512)
Q Consensus       103 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g---~~p~~  174 (512)
                      .-..-..+++.+.+.+... |.+.+++..+.    +..+....+..+ +..+...+++..|.+.++.+....   ..|..
T Consensus        99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen   99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence            1223334556666666555 77766664332    222233333333 233333478888888888776532   23344


Q ss_pred             chHHHHHHHHh--ccCchhHHHHHHHHHHhCC---------CCCchhhHHHHHHHH--hccCCHHHHHHHHHHHHh---C
Q 010342          175 VSYNSIVHGLC--KHGGCMRAYQLLEEGIQFG---------YLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLS---K  238 (512)
Q Consensus       175 ~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~---~  238 (512)
                      .++..++.+..  ..+..+.+.+.++.+....         ..|...+|..+++.+  ...|++..+...++.+..   .
T Consensus       178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~  257 (608)
T PF10345_consen  178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE  257 (608)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            45555555544  3455666666666653321         133455666666654  456777677666655522   0


Q ss_pred             --CCC------CC-----------------ccc-----------HHHHH--HHHHccCChhhHHHHH-------HHHH-h
Q 010342          239 --KDV------DR-----------------TRI-----------CNIYL--RALCLIKNPTELLNVL-------VFML-Q  272 (512)
Q Consensus       239 --~~~------~~-----------------~~~-----------~~~l~--~~~~~~~~~~~a~~~~-------~~~~-~  272 (512)
                        ..+      ++                 ...           +..++  -..+..+..+.+.+.+       +... .
T Consensus       258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~  337 (608)
T PF10345_consen  258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK  337 (608)
T ss_pred             hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence              000      00                 000           11111  1223344443444444       4444 1


Q ss_pred             cCCCCCh--------hhHHHHHH---------HHHhcCCHHHHHHHHHHHhhCCCCCCc-------HHHHHHHHHHHhhc
Q 010342          273 TQCQPDV--------ITLNTVIN---------GFCKMGRIEEALKVLNDMVAGKFCAPD-------AVTFTTIIFGLLNV  328 (512)
Q Consensus       273 ~~~~~~~--------~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~  328 (512)
                      ....+..        ..|...+.         ..+-.+++..|...++.+.......|+       +..+....-.+-..
T Consensus       338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~  417 (608)
T PF10345_consen  338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST  417 (608)
T ss_pred             CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence            1111111        11111111         223458898999999888754321121       22222223334467


Q ss_pred             CCHHHHHHHHH-------hhcccCCCCCChhhHHHH--HHHHHc--cCCHHH--HHHHHHHHHhC-CCCCCh--HhHHH-
Q 010342          329 GRIQEALNLLY-------QVMPQRGYSPGIVTYNAV--LRGLFR--LRRVEE--AKEVFNCMLGI-GVVADS--TTYAI-  391 (512)
Q Consensus       329 ~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~l--~~~~~~--~~~~~~--a~~~~~~~~~~-~~~~~~--~~~~~-  391 (512)
                      |+.+.|...|.       +.....+...+..++..+  +-.+..  ..+..+  ...+++.+... .-.|+.  .++.. 
T Consensus       418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~  497 (608)
T PF10345_consen  418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL  497 (608)
T ss_pred             CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence            99999999997       334344444444444321  111222  222223  66777766542 112222  23333 


Q ss_pred             HHHHHHhcC--CHHHHHHHHHHhhc-----CCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHH
Q 010342          392 VIDGLCESN--QLDEAKRFWDDIVW-----PSNI-HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS---GVTPNIVCYN  460 (512)
Q Consensus       392 l~~~~~~~g--~~~~a~~~~~~~~~-----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~  460 (512)
                      ++.++....  ...++...+.+..+     .+.. .-..+++.|...+. .|+..+..+........   ...-....|.
T Consensus       498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~  576 (608)
T PF10345_consen  498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH  576 (608)
T ss_pred             HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            333332222  12244444433322     1111 11123333333333 67777765555443321   1122344563


Q ss_pred             H-----HHHHHHhcCCHHHHHHHHHHHHH
Q 010342          461 V-----VIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       461 ~-----l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .     +...+...|+.++|.....+...
T Consensus       577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  577 LVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            3     34446778999999988877653

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK15331 chaperone protein SicA; Provisional

Probab=96.94  E-value=0.009  Score=45.64  Aligned_cols=85  Identities=12%  Similarity=-0.068  Sum_probs=49.8

Q ss_pred             cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN   84 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   84 (512)
                      ..+|++++|..+|.-+.-.++. +..-|..|..++-..+++++|+..|......+ .-|+........++...|+.+.|.
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence            3566666666666666555433 44455566666666666666666666654433 234455555566666666666666


Q ss_pred             HHHHHHH
Q 010342           85 VLMFKLW   91 (512)
Q Consensus        85 ~~~~~~~   91 (512)
                      ..+..+.
T Consensus       126 ~~f~~a~  132 (165)
T PRK15331        126 QCFELVN  132 (165)
T ss_pred             HHHHHHH
Confidence            6554444

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.93  E-value=0.021  Score=42.21  Aligned_cols=52  Identities=10%  Similarity=0.121  Sum_probs=36.3

Q ss_pred             CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHH
Q 010342          416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       416 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~  467 (512)
                      ...|+..+..+++.+|+..|++..|.++++.+.+. +++.+..+|..|+.=+.
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            34677777778888887778888888877777653 55556677777765443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.90  E-value=0.38  Score=45.00  Aligned_cols=61  Identities=15%  Similarity=0.146  Sum_probs=26.6

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCChhhHHHHHHHHHH
Q 010342           30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT-YSVLVRGVLRTRDVERANVLMFKLWE   92 (512)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~   92 (512)
                      ..|+.|+.---.....+.+..+++.+...  .|-..- |......-.+.|..+.+..++++.+.
T Consensus        46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~  107 (577)
T KOG1258|consen   46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ  107 (577)
T ss_pred             cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444444433334444455555555533  233332 22222333344555555555555444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.84  E-value=0.081  Score=43.50  Aligned_cols=66  Identities=20%  Similarity=0.101  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCC
Q 010342           67 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS  135 (512)
Q Consensus        67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  135 (512)
                      +-.........|++++|...+.++..+.|..   .......-.++.++.+.|++++|...++++....+
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP   73 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP   73 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            3344555667788888888888777766543   22233444566677777777777777777655443

>PRK15331 chaperone protein SicA; Provisional

Probab=96.81  E-value=0.15  Score=39.14  Aligned_cols=85  Identities=11%  Similarity=-0.066  Sum_probs=37.9

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342          363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH  442 (512)
Q Consensus       363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  442 (512)
                      ..|++++|..+|+-+...+ +-+..-+..|..++-..+++++|...|......+ ..|...+-....++...|+.+.|..
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence            4455555555555444433 2233334444444444555555555554443322 2222233334444445555555555


Q ss_pred             HHHHHHH
Q 010342          443 FLYELVD  449 (512)
Q Consensus       443 ~~~~~~~  449 (512)
                      .|...++
T Consensus       127 ~f~~a~~  133 (165)
T PRK15331        127 CFELVNE  133 (165)
T ss_pred             HHHHHHh
Confidence            5544443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.80  E-value=0.024  Score=41.89  Aligned_cols=81  Identities=14%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhh--------------CCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC
Q 010342          280 ITLNTVINGFCKMGRIEEALKVLNDMVA--------------GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR  345 (512)
Q Consensus       280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  345 (512)
                      .++..++.++++.|+.+....+++..=.              .....|+..+..+++.+|+..+++..|+++++...+..
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            4455566666666666666555544321              11223444444555555555555555555544444444


Q ss_pred             CCCCChhhHHHHHHH
Q 010342          346 GYSPGIVTYNAVLRG  360 (512)
Q Consensus       346 ~~~~~~~~~~~l~~~  360 (512)
                      +++.+..+|..|+..
T Consensus        83 ~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   83 PIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            444444444444443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.79  E-value=0.24  Score=41.12  Aligned_cols=171  Identities=16%  Similarity=0.095  Sum_probs=94.6

Q ss_pred             cccCcHHHHHHHHHHHHhCCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHh-----
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLR-----   76 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~-----   76 (512)
                      ++.|++++|.+.|+.+..+.+-  -...+.-.++-++-+.++++.|+..+++..+.. -.||. -|...|.+...     
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~  123 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID  123 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence            4678888899888888876221  123355666677778888888888888887753 22333 34444444432     


Q ss_pred             --cCChh---hHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHh
Q 010342           77 --TRDVE---RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR  151 (512)
Q Consensus        77 --~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  151 (512)
                        .+|..   .|..-+.+++++.|.. ...++...                   -...+...-    ...=..+.+.|.+
T Consensus       124 ~~~rDq~~~~~A~~~f~~~i~ryPnS-~Ya~dA~~-------------------~i~~~~d~L----A~~Em~IaryY~k  179 (254)
T COG4105         124 DVTRDQSAARAAFAAFKELVQRYPNS-RYAPDAKA-------------------RIVKLNDAL----AGHEMAIARYYLK  179 (254)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHCCCC-cchhhHHH-------------------HHHHHHHHH----HHHHHHHHHHHHH
Confidence              12222   2333344444444433 22232211                   111000000    0001135677888


Q ss_pred             cCChhhHHHHHHHHHHcCCCCCc---chHHHHHHHHhccCchhHHHHHHHHHH
Q 010342          152 SGRNHGASRVVYVMRKRGLTPSL---VSYNSIVHGLCKHGGCMRAYQLLEEGI  201 (512)
Q Consensus       152 ~~~~~~a~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~  201 (512)
                      .|.+..|..-++.|.+. .+-+.   ..+-.+..+|...|-.++|...-.-+.
T Consensus       180 r~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         180 RGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             hcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            88888888888888775 22122   245566677777887777776655443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.78  E-value=0.0055  Score=41.21  Aligned_cols=64  Identities=17%  Similarity=0.110  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc-hHhHHHHHHHHHccCChhHHHHHHHh
Q 010342           66 TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCREGYVNEVFRIAED  129 (512)
Q Consensus        66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~  129 (512)
                      +|+.+...+...|++++|...+++.++.....++..+. ..++..+...+...|++++|++.+++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45555566666666666666666655542222122222 34555566666666666666666654

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.68  E-value=0.45  Score=42.78  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=95.6

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHh-HHHHH
Q 010342          351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMI  428 (512)
Q Consensus       351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~  428 (512)
                      ...|...+..-.+..-++.|..+|-++.+.+ +.++..++++++..++ .|+...|..+|+--...  -||... -+-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3456677777777788899999999998887 5677788888887665 57888888988876543  233333 35666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          429 KGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       429 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .-+...++-+.|..+|+..++. +..+  ..+|..++.--..-|+...+..+-++|..
T Consensus       474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            6777888888899999865543 1222  45788888888888888888887777765

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.67  E-value=0.17  Score=47.60  Aligned_cols=117  Identities=16%  Similarity=0.155  Sum_probs=77.3

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChHhHHH-HHHHHHhcCCHHHHHHHHHHhhcCCC---CCCHHhHHHHHHHHHhcCCHHH
Q 010342          364 LRRVEEAKEVFNCMLGIGVVADSTTYAI-VIDGLCESNQLDEAKRFWDDIVWPSN---IHDNYVYAAMIKGLCRSGKIHE  439 (512)
Q Consensus       364 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~  439 (512)
                      ..+.+.|.++++.+.+.  -|+...|.. -.+.+...|++++|.+.++++.....   +.....+--+...+....++++
T Consensus       246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~  323 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE  323 (468)
T ss_pred             CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence            45677888888888875  355554433 34666778888999988887653111   1123345667777888889999


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCCH-------HHHHHHHHHHH
Q 010342          440 AVHFLYELVDSGVTPNIVCYNVVIDGA-CKLSMK-------REAYQILREMR  483 (512)
Q Consensus       440 a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~m~  483 (512)
                      |.+.|..+.+.. ..+..+|..+..+| ...|+.       ++|.+++.+..
T Consensus       324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            999999888764 33445555444333 456766       77888877764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.66  E-value=0.0063  Score=40.92  Aligned_cols=61  Identities=18%  Similarity=0.247  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELVDS----GV-TPN-IVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      +++.+...|...|++++|+..|++..+.    |. .|+ ..++..+...+...|++++|++.+++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555666666666666666666655432    11 111 3445666666666677777766666654

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.60  E-value=0.52  Score=42.50  Aligned_cols=422  Identities=14%  Similarity=0.150  Sum_probs=206.1

Q ss_pred             cHHHHHHHHHHHHhCCCCCChHhHHHHHHH--HHhcCChhHHHHHHHHHHhC--CCCC------------ChhhHHHHHH
Q 010342            9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHG--YCRTGEMDVAYKVFDEMRHC--GVLP------------NSLTYSVLVR   72 (512)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~l~~   72 (512)
                      +.+.-...+....+.  .| ...|-.+..+  +-+.+++++|++.|..-...  +..|            |...=+..++
T Consensus        60 nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~  136 (549)
T PF07079_consen   60 NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH  136 (549)
T ss_pred             hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence            444444455555554  22 2345555444  34788999999988877654  2222            1112244567


Q ss_pred             HHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhc
Q 010342           73 GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS  152 (512)
Q Consensus        73 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  152 (512)
                      ++...|.+.+++.++++++.++-.. ...++..+|+.++-.+++.=-++-    -+. ...++-|+   |--++-.|.+.
T Consensus       137 sLIe~g~f~EgR~iLn~i~~~llkr-E~~w~~d~yd~~vlmlsrSYfLEl----~e~-~s~dl~pd---yYemilfY~kk  207 (549)
T PF07079_consen  137 SLIETGRFSEGRAILNRIIERLLKR-ECEWNSDMYDRAVLMLSRSYFLEL----KES-MSSDLYPD---YYEMILFYLKK  207 (549)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhhh-hhcccHHHHHHHHHHHhHHHHHHH----HHh-cccccChH---HHHHHHHHHHH
Confidence            8889999999999999998876554 567888889887766655321111    011 11111121   22233333222


Q ss_pred             CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCchh-hHHHHHHHHhccCCHHHHH
Q 010342          153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK--HGGCMRAYQLLEEGIQFGYLPSEH-TYKVLVEGLCGESDLEKAR  229 (512)
Q Consensus       153 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~  229 (512)
                      =..-++      -.=..+.|-......++....-  .....--.++++.-...-+.|+.. ....+...+..  +.+++.
T Consensus       208 i~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~  279 (549)
T PF07079_consen  208 IHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG  279 (549)
T ss_pred             HHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence            100000      0000011111111111111111  111111222222222223344332 22233333332  445555


Q ss_pred             HHHHHHHhCCCCC----CcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChh-----hHHHHHHHHHh----cCCHH
Q 010342          230 KVLQFMLSKKDVD----RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI-----TLNTVINGFCK----MGRIE  296 (512)
Q Consensus       230 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~  296 (512)
                      .+-+.+......+    -...+..++....+.++...|.+.+.-+....+.....     +-..+-+..+.    .-+..
T Consensus       280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr  359 (549)
T PF07079_consen  280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLR  359 (549)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHH
Confidence            4444443321100    02345666666677777777777666655443221100     00111112221    11233


Q ss_pred             HHHHHHHHHhhCCCCCCcHHHHHHHHH---HHhhcCC-HHHHHHHHHhhcccCCCCCChhhHHHHH----HHHHc---cC
Q 010342          297 EALKVLNDMVAGKFCAPDAVTFTTIIF---GLLNVGR-IQEALNLLYQVMPQRGYSPGIVTYNAVL----RGLFR---LR  365 (512)
Q Consensus       297 ~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~  365 (512)
                      .-+.+|+.....+.  .....-..++.   -+-+.|. -++|+++++.+++-.  +-|...-|.+.    .+|.+   ..
T Consensus       360 ~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~  435 (549)
T PF07079_consen  360 DYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMH  435 (549)
T ss_pred             HHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhh
Confidence            34555555554331  12222222222   2233444 777888887755332  22322222221    22322   33


Q ss_pred             CHHHHHHHHHHHHhCCCCCChH----hHHHHHHH--HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 010342          366 RVEEAKEVFNCMLGIGVVADST----TYAIVIDG--LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE  439 (512)
Q Consensus       366 ~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  439 (512)
                      .+.+-..+-+-+.+.|++|-..    .-|.|.++  +...|++.++.-.-.-+.+  +.|++.+|..+.-++....++++
T Consensus       436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e  513 (549)
T PF07079_consen  436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE  513 (549)
T ss_pred             hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence            4555555555566678777443    34444432  4567888887765444433  57899999999999999999999


Q ss_pred             HHHHHHHHHHCCCCCChhhHHH
Q 010342          440 AVHFLYELVDSGVTPNIVCYNV  461 (512)
Q Consensus       440 a~~~~~~~~~~~~~p~~~~~~~  461 (512)
                      |..++..+     +|+..+++.
T Consensus       514 A~~~l~~L-----P~n~~~~ds  530 (549)
T PF07079_consen  514 AWEYLQKL-----PPNERMRDS  530 (549)
T ss_pred             HHHHHHhC-----CCchhhHHH
Confidence            99999764     777777764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.83  Score=44.61  Aligned_cols=51  Identities=8%  Similarity=0.117  Sum_probs=32.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY  445 (512)
Q Consensus       391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  445 (512)
                      -++..+.+..+.+.+..+.+..-+    .++..|..++..+++.+.++...+...
T Consensus       710 dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~  760 (933)
T KOG2114|consen  710 DLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVY  760 (933)
T ss_pred             HHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHH
Confidence            355666677777777777776542    266677777777777775554444333

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.57  E-value=0.16  Score=36.97  Aligned_cols=139  Identities=12%  Similarity=0.202  Sum_probs=78.3

Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHH
Q 010342          291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA  370 (512)
Q Consensus       291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  370 (512)
                      -.|..++..++..+...    +.+..-++.++--....-+-+-..++++..-+-.    |..          .+|+....
T Consensus        14 ldG~V~qGveii~k~v~----Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Dis----------~C~NlKrV   75 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVN----SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DIS----------KCGNLKRV   75 (161)
T ss_dssp             HTT-HHHHHHHHHHHHH----HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----GG----------G-S-THHH
T ss_pred             HhchHHHHHHHHHHHcC----cCCccccceeeeecchhhchhHHHHHHHHHhhhc----Cch----------hhcchHHH
Confidence            35778888888887776    3455566666666666666666666665532222    211          22333333


Q ss_pred             HHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      ..-+-.+     ..+......-+..+...|.-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.
T Consensus        76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3332221     1233445556677777888888888888876533 677777888888888888888888888888887


Q ss_pred             CCC
Q 010342          451 GVT  453 (512)
Q Consensus       451 ~~~  453 (512)
                      |++
T Consensus       150 G~k  152 (161)
T PF09205_consen  150 GLK  152 (161)
T ss_dssp             T-H
T ss_pred             chH
Confidence            753

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.78  Score=44.17  Aligned_cols=117  Identities=12%  Similarity=0.163  Sum_probs=88.7

Q ss_pred             CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhH
Q 010342          345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY  424 (512)
Q Consensus       345 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  424 (512)
                      .+..-...+.+--+.-+...|+..+|.++-.+.+    -||...|-.-+.+++..+++++-+++-+...      ++.-|
T Consensus       678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy  747 (829)
T KOG2280|consen  678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGY  747 (829)
T ss_pred             hccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCc
Confidence            3434444566677777888999999999887765    5788888888899999999998887776553      13467


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR  480 (512)
Q Consensus       425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  480 (512)
                      .....+|.+.|+.++|.+++-+...     .    .-...+|.+.|++.+|.+.--
T Consensus       748 ~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  748 LPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             hhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHH
Confidence            7788999999999999998865421     1    156788888999888877643

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.4  Score=40.66  Aligned_cols=54  Identities=22%  Similarity=0.219  Sum_probs=36.6

Q ss_pred             HHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010342          183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS  237 (512)
Q Consensus       183 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  237 (512)
                      .....|++.+|..+|....+.. +-+...-..++.+|...|+.+.|..++..+..
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~  196 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL  196 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence            4456777777777777776653 23345556677777778888888877776653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.45  E-value=0.06  Score=48.67  Aligned_cols=64  Identities=14%  Similarity=0.052  Sum_probs=45.8

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWP  415 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  415 (512)
                      +...++.+..+|...|++++|+..|++..+.  .|+.    .+|..+..+|...|++++|...++++++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556777777777788888888888777764  3443    24777777777788888888888777654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.4  Score=39.32  Aligned_cols=25  Identities=8%  Similarity=0.134  Sum_probs=12.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEMR   56 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m~   56 (512)
                      |..-..+|-...++++|...+.+..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~   58 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKAS   58 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4444445555555555555554443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.46  Score=40.33  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=54.7

Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 010342          218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE  297 (512)
Q Consensus       218 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  297 (512)
                      .....|++.+|..+|+...... +.+......+..++...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            3456677777777777766532 222444455555555555555555555544322211111111122222223222222


Q ss_pred             HHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc
Q 010342          298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ  344 (512)
Q Consensus       298 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  344 (512)
                      ...+-.+....   +.|...-..+...+...|+.+.|++.+-.+++.
T Consensus       222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            22222222221   224444444555555555555555555444433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.39  E-value=0.63  Score=41.15  Aligned_cols=108  Identities=14%  Similarity=0.196  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 010342          317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL  396 (512)
Q Consensus       317 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  396 (512)
                      +.+..+.-+...|+...|.++-.+ .   + -|+..-|...+.+++..+++++...+...      .-++.-|..++.+|
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~-F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKE-F---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHH-c---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            344445556666777776665443 2   2 36667777777777777777776665432      12345677777777


Q ss_pred             HhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY  445 (512)
Q Consensus       397 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  445 (512)
                      .+.|+..+|..+..++          .+..-+..|.+.|++.+|.+.-.
T Consensus       248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~  286 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF  286 (319)
T ss_pred             HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence            7777777777777663          11345566677777777766543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.39  E-value=0.24  Score=36.17  Aligned_cols=140  Identities=16%  Similarity=0.209  Sum_probs=81.1

Q ss_pred             hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHH
Q 010342          326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA  405 (512)
Q Consensus       326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  405 (512)
                      .-.|..++..+++.+.....    +..-+|.++--....-+-+-..++++..-+   -.|..          .+|++...
T Consensus        13 ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrV   75 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRV   75 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHH
T ss_pred             HHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHH
Confidence            44677777778777765433    333444444333333333444444444432   22222          23444444


Q ss_pred             HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      ...+-.+     ..+......-+..+..+|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.++++++.+.
T Consensus        76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            4444333     2234456667788899999999999999988644 788999999999999999999999999999999


Q ss_pred             CCC
Q 010342          486 GLN  488 (512)
Q Consensus       486 ~~~  488 (512)
                      |++
T Consensus       150 G~k  152 (161)
T PF09205_consen  150 GLK  152 (161)
T ss_dssp             T-H
T ss_pred             chH
Confidence            864

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.39  E-value=0.13  Score=47.61  Aligned_cols=130  Identities=14%  Similarity=0.092  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG  360 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  360 (512)
                      ..+.++..+.+.|-++.|+++...-.             .-.....+.|+.+.|.++..+       .+++..|..|...
T Consensus       297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~  356 (443)
T PF04053_consen  297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE-------LDDPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC-------CSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh-------cCcHHHHHHHHHH
Confidence            35555666666666666665543211             122334556666666554322       2245566666666


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 010342          361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA  440 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  440 (512)
                      ....|+++-|+..|.+...         +..|+-.|...|+.+.-.++.+.....|      -++....++...|+.++.
T Consensus       357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c  421 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC  421 (443)
T ss_dssp             HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred             HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence            6666666666666655432         3445555555666666555555555444      233344444445555555


Q ss_pred             HHHHH
Q 010342          441 VHFLY  445 (512)
Q Consensus       441 ~~~~~  445 (512)
                      .+++.
T Consensus       422 v~lL~  426 (443)
T PF04053_consen  422 VDLLI  426 (443)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.36  E-value=0.71  Score=41.37  Aligned_cols=31  Identities=13%  Similarity=0.190  Sum_probs=19.6

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       420 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            4444556666666667777777777766654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.12  Score=44.39  Aligned_cols=151  Identities=13%  Similarity=0.037  Sum_probs=100.1

Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH----HHHHHHccCC
Q 010342          291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA----VLRGLFRLRR  366 (512)
Q Consensus       291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~  366 (512)
                      -.|+..+|-..++++.+..  |.|...+.-.-.++...|+...-...+.+++..-  .++...|..    +.-++...|-
T Consensus       115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence            4577777777888888765  6777777777788888888888888887776543  344433332    2233456788


Q ss_pred             HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC----CHHhHHHHHHHHHhcCCHHHHHH
Q 010342          367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH----DNYVYAAMIKGLCRSGKIHEAVH  442 (512)
Q Consensus       367 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~  442 (512)
                      +++|++.-++..+.+ +.|...-.++...+.-.|++.++.++..+-... ...    -..-|-...-.+...+.++.|.+
T Consensus       191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            888888888877754 456666666777777788888888877765321 111    11233344445566678888888


Q ss_pred             HHHHH
Q 010342          443 FLYEL  447 (512)
Q Consensus       443 ~~~~~  447 (512)
                      +|+.=
T Consensus       269 IyD~e  273 (491)
T KOG2610|consen  269 IYDRE  273 (491)
T ss_pred             HHHHH
Confidence            88653

>PRK11906 transcriptional regulator; Provisional

Probab=96.35  E-value=0.41  Score=43.62  Aligned_cols=148  Identities=13%  Similarity=0.035  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhcccCCCCCCh-hhHHHHHHHHH---------ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010342          331 IQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLF---------RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN  400 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  400 (512)
                      .+.|+.+|.+........|+- ..|..+..++.         ...+..+|.++-+...+.+ +.|+.....+..+....+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence            456667777766444555553 22322222221         1234556777777777766 667788888888778888


Q ss_pred             CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 010342          401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQIL  479 (512)
Q Consensus       401 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~  479 (512)
                      +++.|...|++....+ +....+|......+.-.|+.++|.+.+++..+..+.- -.......+..|+..+ .++|.+++
T Consensus       353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~  430 (458)
T PRK11906        353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY  430 (458)
T ss_pred             chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence            8999999999987764 4455567777777778899999999998877653221 1223333344666544 56677665


Q ss_pred             HH
Q 010342          480 RE  481 (512)
Q Consensus       480 ~~  481 (512)
                      -+
T Consensus       431 ~~  432 (458)
T PRK11906        431 YK  432 (458)
T ss_pred             hh
Confidence            43

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.34  E-value=0.067  Score=40.01  Aligned_cols=72  Identities=17%  Similarity=0.184  Sum_probs=48.8

Q ss_pred             cccCcHHHHHHHHHHHHhCCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR   76 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~   76 (512)
                      ++.|++++|++.|+.+..+-+.  -...+...|+.+|.+.+++++|...+++..+.+..--..-|...+.++..
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            5678888888888888876211  13445677888888888888888888888876422222345555555443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.32  E-value=1.3  Score=45.28  Aligned_cols=79  Identities=16%  Similarity=0.104  Sum_probs=40.5

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH--hHHHHHHHHHhcC
Q 010342          358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY--VYAAMIKGLCRSG  435 (512)
Q Consensus       358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g  435 (512)
                      ...+...+.+++|--.|+..-+         ..--+.+|..+|++.+|..+..++..   ..+..  +-..|..-+..++
T Consensus       946 a~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen  946 ADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred             HHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcc
Confidence            3334445555555555554322         12234556666666666666665531   11111  1244555666666


Q ss_pred             CHHHHHHHHHHHH
Q 010342          436 KIHEAVHFLYELV  448 (512)
Q Consensus       436 ~~~~a~~~~~~~~  448 (512)
                      +.-+|-++..+..
T Consensus      1014 kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYL 1026 (1265)
T ss_pred             cchhHHHHHHHHh
Confidence            6666666665544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.30  E-value=0.064  Score=48.53  Aligned_cols=101  Identities=11%  Similarity=0.074  Sum_probs=73.6

Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 010342          383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY  459 (512)
Q Consensus       383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  459 (512)
                      +.+...++.+..+|...|++++|...|++.++.+ +.+.   .+|..+..+|...|+.++|++.+++.++.+ .|   .|
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f  146 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF  146 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence            4566789999999999999999999999998764 2233   358999999999999999999999998852 11   23


Q ss_pred             HHHHH--HHHhcCCHHHHHHHHHHHHHCCCC
Q 010342          460 NVVID--GACKLSMKREAYQILREMRKNGLN  488 (512)
Q Consensus       460 ~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~  488 (512)
                      ..+..  .+....+.++..++++.+.+.|.+
T Consensus       147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~  177 (453)
T PLN03098        147 STILNDPDLAPFRASPEFKELQEEARKGGED  177 (453)
T ss_pred             HHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence            21111  111233445677788888877754

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.1  Score=46.10  Aligned_cols=95  Identities=9%  Similarity=-0.028  Sum_probs=67.7

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY-NVVIDG  465 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~  465 (512)
                      .++..|..+|.+.+++..|++.....+..+ ++|...+-.=..+|...|+++.|+..|+++++.  .|+.... +-|+..
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence            356677788888888888888888888776 677777777788888889999999999988886  4544443 344444


Q ss_pred             HHhcCCH-HHHHHHHHHHHH
Q 010342          466 ACKLSMK-REAYQILREMRK  484 (512)
Q Consensus       466 ~~~~g~~-~~a~~~~~~m~~  484 (512)
                      -.+.... ++..++|..|..
T Consensus       335 ~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            3333333 334677888764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.19  Score=44.54  Aligned_cols=97  Identities=12%  Similarity=0.062  Sum_probs=73.9

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                      .+++.+..++.+.+++..|+..-+..+..+ ++|....-.-..+|...|+++.|...|+++++.. +.|..+-+.|+.+-
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK  335 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            466778888999999999999999999876 7788888888899999999999999999998764 44444445555444


Q ss_pred             HhcCCH-HHHHHHHHHHHHC
Q 010342          432 CRSGKI-HEAVHFLYELVDS  450 (512)
Q Consensus       432 ~~~g~~-~~a~~~~~~~~~~  450 (512)
                      .+..+. +...++|..|...
T Consensus       336 ~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            444433 3457788888753

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.08  E-value=1.3  Score=41.66  Aligned_cols=186  Identities=10%  Similarity=-0.048  Sum_probs=106.6

Q ss_pred             chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 010342          208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN  287 (512)
Q Consensus       208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  287 (512)
                      +..+|..-+..-...|+.+.+.-+|+.... ....-...|-.++......|+.+-+..++....+...+..+.+--.-..
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli-~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLI-PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHh-HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            446788888888899999999999988763 2333345566666666666888888777777666544433332222222


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHH---HHHHhhcccCCCCCChhhHHHHHHH----
Q 010342          288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL---NLLYQVMPQRGYSPGIVTYNAVLRG----  360 (512)
Q Consensus       288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~~----  360 (512)
                      ..-..|++..|..+++.+....  +.-...-..-+....+.|..+.+.   .++.... ..  .-+..+...+.--    
T Consensus       375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~-~~--~~~~~i~~~l~~~~~r~  449 (577)
T KOG1258|consen  375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY-EG--KENNGILEKLYVKFARL  449 (577)
T ss_pred             HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc-cc--ccCcchhHHHHHHHHHH
Confidence            2344578888888888887653  222222222333445566666655   3332211 11  1122222222211    


Q ss_pred             -HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010342          361 -LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN  400 (512)
Q Consensus       361 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  400 (512)
                       +.-.++.+.|..++.++... ++++...|..+++.....+
T Consensus       450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence             22356777788887777765 3666666766666555444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.07  E-value=0.097  Score=43.77  Aligned_cols=104  Identities=16%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA  108 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (512)
                      .|+.-+..+ +.|++..|...|....+...  ...+..+..|..++...|+++.|...|..+.+..|..   .--+..+-
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdall  219 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDALL  219 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHHH
Confidence            455555443 56667777777777766531  1122345567777777777777777777777666544   22334555


Q ss_pred             HHHHHHHccCChhHHHHHHHhcCCCCCCCc
Q 010342          109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNE  138 (512)
Q Consensus       109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  138 (512)
                      -|.....+.|+-++|...|+++.+.-+..+
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            677777777777777777777766554433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.05  E-value=0.2  Score=40.96  Aligned_cols=202  Identities=12%  Similarity=0.092  Sum_probs=102.6

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER   82 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~   82 (512)
                      +|....++++|...+.+..+- ...|...|.       ....++.|.-+.++|.+.  +--...|......|...|..+.
T Consensus        40 afRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   40 AFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             HHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcch
Confidence            455667788888877766632 121222222       122345555555555542  1122345555566666666666


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchH--hHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHH
Q 010342           83 ANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR  160 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  160 (512)
                      |-..+.+.-+-+.   +..|+..  .|..-+......++...|.++               +...-+.+.+...+++|-.
T Consensus       110 AAmaleKAak~le---nv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Eaa~  171 (308)
T KOG1585|consen  110 AAMALEKAAKALE---NVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEAAT  171 (308)
T ss_pred             HHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHHHH
Confidence            6555544433222   2333321  122222222222333333332               2334445556666666554


Q ss_pred             HHHHHHH----cCCCCCc-chHHHHHHHHhccCchhHHHHHHHHHHhCC---CCCchhhHHHHHHHHhccCCHHHHHHHH
Q 010342          161 VVYVMRK----RGLTPSL-VSYNSIVHGLCKHGGCMRAYQLLEEGIQFG---YLPSEHTYKVLVEGLCGESDLEKARKVL  232 (512)
Q Consensus       161 ~~~~~~~----~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~  232 (512)
                      .|.+-..    -.-.|+. ..|...|-.+....++..|..+++.--+.+   -+-+..+...|+.+| ..||.+++.+++
T Consensus       172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            4433221    1111222 346666667777788888888888754432   233566777788776 567888777765


Q ss_pred             H
Q 010342          233 Q  233 (512)
Q Consensus       233 ~  233 (512)
                      .
T Consensus       251 ~  251 (308)
T KOG1585|consen  251 S  251 (308)
T ss_pred             c
Confidence            4

>PRK11906 transcriptional regulator; Provisional

Probab=95.98  E-value=0.44  Score=43.48  Aligned_cols=140  Identities=11%  Similarity=-0.005  Sum_probs=100.5

Q ss_pred             CHHHHHHHHHHHHh-CCCCCC-hHhHHHHHHHHHh---------cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 010342          366 RVEEAKEVFNCMLG-IGVVAD-STTYAIVIDGLCE---------SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS  434 (512)
Q Consensus       366 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  434 (512)
                      ..+.|..+|.+... +...|+ ...|..+..++..         ..+..+|.++-++.++.+ +.|......+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            35678888988882 223443 4455555544432         234567888888888877 77888888888888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHhhccCCCCCC
Q 010342          435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA---VTWRILDKLHGNRGNDFG  509 (512)
Q Consensus       435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~  509 (512)
                      ++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+  +.|..   ......++.|+..+-+.+
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~~~~~  426 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNPLKNN  426 (458)
T ss_pred             cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCchhhh
Confidence            9999999999999887522 466777788888889999999999999766  56653   344445567766654443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=1.7  Score=41.97  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 010342          318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC  397 (512)
Q Consensus       318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  397 (512)
                      .+--+.-+...|+-.+|.++-.+ .+    -||...|-.-+.+++..+++++-+++-+...      .+.-|.-.+.+|.
T Consensus       687 l~dTv~~li~~g~~k~a~ql~~~-Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~  755 (829)
T KOG2280|consen  687 LHDTVTTLILIGQNKRAEQLKSD-FK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL  755 (829)
T ss_pred             HHHHHHHHHHccchHHHHHHHHh-cC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence            33444445555555555554433 11    3455555555555555555555554433322      1334555555666


Q ss_pred             hcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 010342          398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL  444 (512)
Q Consensus       398 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  444 (512)
                      +.|+.++|.+++.+...     ..    -...+|.+.|++.+|.+.-
T Consensus       756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence            66666666666655421     11    3445555556665555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.92  E-value=0.32  Score=45.16  Aligned_cols=156  Identities=11%  Similarity=0.095  Sum_probs=92.5

Q ss_pred             HHHhcCChhHHHHHHH--HHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHH
Q 010342           38 GYCRTGEMDVAYKVFD--EMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC  115 (512)
Q Consensus        38 ~~~~~~~~~~a~~~~~--~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  115 (512)
                      ...-.++++++.+..+  ++.. .+  +..-.+.+++.+.+.|..+.|+++...-            +     .-.+...
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~-----~rFeLAl  329 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------D-----HRFELAL  329 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------H-----HHHHHHH
T ss_pred             HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------H-----HHhHHHH
Confidence            3445677777666664  1121 11  2444777778788888888887643221            1     2445667


Q ss_pred             ccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHH
Q 010342          116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ  195 (512)
Q Consensus       116 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~  195 (512)
                      +.|+++.|.++.++..      +...|..|.....+.|+++-|.+.|.+...         |..|+-.|.-.|+.+...+
T Consensus       330 ~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k  394 (443)
T PF04053_consen  330 QLGNLDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK  394 (443)
T ss_dssp             HCT-HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred             hcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence            7888888888766654      455788888888888888888888776543         4556666677777777777


Q ss_pred             HHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 010342          196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF  234 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  234 (512)
                      +.+.....|      -++....++.-.|+.++..+++..
T Consensus       395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            776666554      244455555566777777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.70  E-value=0.21  Score=42.51  Aligned_cols=73  Identities=12%  Similarity=0.194  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD-----SGVTPNIVCYNV  461 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~  461 (512)
                      ++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            44445555555555555555555555443 34444555555555555555555555544432     344444444433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.66  E-value=0.93  Score=42.86  Aligned_cols=163  Identities=16%  Similarity=0.103  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHH-----HHHHHHHHHhh----cCCHHHHHHHHHhhcccCCCCCChh
Q 010342          282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV-----TFTTIIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIV  352 (512)
Q Consensus       282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  352 (512)
                      +..++....-.||-+.+++.+.+..+.+.+.....     .|..++..++.    ....+.|.+++..+...   -|+..
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~  267 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA  267 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence            34555555566777777777766655433222111     12222222222    34556666766664432   35544


Q ss_pred             hHHHH-HHHHHccCCHHHHHHHHHHHHhCCC---CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342          353 TYNAV-LRGLFRLRRVEEAKEVFNCMLGIGV---VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI  428 (512)
Q Consensus       353 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  428 (512)
                      .|... .+.+...|+.++|++.|++......   +.....+--+...+...+++++|...|..+.+.+ ..+..+|..+.
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~  346 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence            44332 3445567777777777776543110   1122334445556666777777777777776644 33444444333


Q ss_pred             H-HHHhcCCH-------HHHHHHHHHHH
Q 010342          429 K-GLCRSGKI-------HEAVHFLYELV  448 (512)
Q Consensus       429 ~-~~~~~g~~-------~~a~~~~~~~~  448 (512)
                      . ++...|+.       ++|.++|.+..
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            3 23345655       66666666543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.66  E-value=0.22  Score=39.64  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch--H
Q 010342           30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS--LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN--A  105 (512)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~  105 (512)
                      ..+..+...|.+.|+.+.|++.|.++......+..  ..+..+|+.....+++..+...+.++-..+...++....+  .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            46889999999999999999999999886544433  3567788888999999999888777755544422211111  1


Q ss_pred             hHHHHHHHHHccCChhHHHHHHHhcCC
Q 010342          106 AFANLVDSLCREGYVNEVFRIAEDMPQ  132 (512)
Q Consensus       106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  132 (512)
                      .|..  -.+...+++.+|-+.|-+...
T Consensus       117 ~~~g--L~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEG--LANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHH--HHHHHhchHHHHHHHHHccCc
Confidence            1222  223346778887777766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.59  E-value=0.056  Score=31.24  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=14.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          458 CYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      +|..+..+|.+.|++++|.++++++.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555555555555555555555555

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.59  E-value=0.74  Score=35.14  Aligned_cols=66  Identities=20%  Similarity=0.250  Sum_probs=32.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc-CCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342          280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-GRIQEALNLLYQVMPQRGYSPGIVTYNAVL  358 (512)
Q Consensus       280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  358 (512)
                      .....+++.|.+.+.++++.-++.++..          +...+..+... ++++.|.+.+.+       ..++..|..++
T Consensus        70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~-------~~~~~lw~~~~  132 (140)
T smart00299       70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK-------QNNPELWAEVL  132 (140)
T ss_pred             CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh-------CCCHHHHHHHH
Confidence            3344456666666666666666655431          11122222223 556666665543       12444555555


Q ss_pred             HHHH
Q 010342          359 RGLF  362 (512)
Q Consensus       359 ~~~~  362 (512)
                      ..+.
T Consensus       133 ~~~l  136 (140)
T smart00299      133 KALL  136 (140)
T ss_pred             HHHH
Confidence            5443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.54  E-value=0.56  Score=39.43  Aligned_cols=96  Identities=18%  Similarity=0.215  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCCHHhHHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHDNYVYAAM  427 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l  427 (512)
                      .|+.-+.. .+.|++..|...|....+.. |-+   ...+-.|..++...|++++|..+|..+.+.-.  +.-+..+--|
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            45555553 35666777777777777642 222   23455566777777777777777776654321  1122355556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 010342          428 IKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       428 ~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      ..+..+.|+.++|..+|+++.+.
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHH
Confidence            66666677777777777776665

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.67  Score=40.01  Aligned_cols=156  Identities=15%  Similarity=0.069  Sum_probs=109.9

Q ss_pred             HHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHhhcC
Q 010342          254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA----VTFTTIIFGLLNVG  329 (512)
Q Consensus       254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~  329 (512)
                      ....|+..+|-..++++++.- +.|...+...=.+|.-.|+.+.-...++++...-  .++.    ..-..+..++...|
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhc
Confidence            345778888888888888764 4478888888889999999999999999887652  2333    33344556677899


Q ss_pred             CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCChHhHHHHHHHHHhcCCHHHHH
Q 010342          330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAK  406 (512)
Q Consensus       330 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~  406 (512)
                      -+++|.+.-++.++-.  +.|.-.-.++...+--.++.+++.++..+-...   +--.-..-|-...-.+...+.++.|+
T Consensus       190 ~y~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al  267 (491)
T KOG2610|consen  190 IYDDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL  267 (491)
T ss_pred             cchhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence            9999999888866443  445555667777777889999999987655431   11111223444455567779999999


Q ss_pred             HHHHHhhc
Q 010342          407 RFWDDIVW  414 (512)
Q Consensus       407 ~~~~~~~~  414 (512)
                      ++|+.-+-
T Consensus       268 eIyD~ei~  275 (491)
T KOG2610|consen  268 EIYDREIW  275 (491)
T ss_pred             HHHHHHHH
Confidence            99987553

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.27  E-value=0.071  Score=30.81  Aligned_cols=27  Identities=22%  Similarity=0.301  Sum_probs=13.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          424 YAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       424 ~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +..+...|...|++++|.++|+++++.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444445555555555555555555544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.25  E-value=1.2  Score=38.98  Aligned_cols=85  Identities=15%  Similarity=0.241  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh--cC----ChhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCh
Q 010342           10 VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR--TG----EMDVAYKVFDEMRHCGV---LPNSLTYSVLVRGVLRTRDV   80 (512)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~~~~   80 (512)
                      +.+...+++.|.+.|++-+..+|-+.......  ..    ...+|..+|+.|++.+.   .++..++..++..  ...+.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            44567778888888888776555443333322  22    34568899999988752   3344555555443  44455


Q ss_pred             hhHHHHHHHHHHHhhh
Q 010342           81 ERANVLMFKLWERMKE   96 (512)
Q Consensus        81 ~~a~~~~~~~~~~~~~   96 (512)
                      +.-.+..+.+++.+..
T Consensus       156 e~l~~~~E~~Y~~L~~  171 (297)
T PF13170_consen  156 EELAERMEQCYQKLAD  171 (297)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5444444444444433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.21  E-value=1.6  Score=36.52  Aligned_cols=183  Identities=15%  Similarity=0.106  Sum_probs=105.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342          280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL  358 (512)
Q Consensus       280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  358 (512)
                      ..|+. +..-.+.|++++|.+.|+.+....... -...+.-.++.++.+.++++.|+..+++.+...+-.|+. -|...|
T Consensus        36 ~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl  113 (254)
T COG4105          36 ELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL  113 (254)
T ss_pred             HHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence            33444 334566799999999999998765322 244556667778889999999999999988877777764 343444


Q ss_pred             HHHHc-------cCCHHHHHHHH---HHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342          359 RGLFR-------LRRVEEAKEVF---NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI  428 (512)
Q Consensus       359 ~~~~~-------~~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  428 (512)
                      .+++.       ..|...+...+   ++++.. . ||..             =...|..-...+...    -...=..+.
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-y-PnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~Ia  174 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-Y-PNSR-------------YAPDAKARIVKLNDA----LAGHEMAIA  174 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-C-CCCc-------------chhhHHHHHHHHHHH----HHHHHHHHH
Confidence            44432       22333333333   333332 1 2211             111111111111100    000112355


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          429 KGLCRSGKIHEAVHFLYELVDSGVTPNI---VCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       429 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      +-|.+.|.+..|..-+++|++. .+-+.   ..+-.+..+|.+.|..++|.+.-+-+..
T Consensus       175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            6778888888888888888875 22222   3355667788888888888776655543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.14  E-value=0.19  Score=42.05  Aligned_cols=72  Identities=22%  Similarity=0.260  Sum_probs=40.2

Q ss_pred             CcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc----------------CChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 010342            8 SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRT----------------GEMDVAYKVFDEMRHCGVLPNSLTYSVLV   71 (512)
Q Consensus         8 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~   71 (512)
                      +.++=--..+..|.+.|+.-|..+|+.|+..+-+.                .+-+-+++++++|...|+.||..+-..++
T Consensus        86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv  165 (406)
T KOG3941|consen   86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV  165 (406)
T ss_pred             chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence            33444444555566666666666666666654332                12233566666666666666666666666


Q ss_pred             HHHHhcCC
Q 010342           72 RGVLRTRD   79 (512)
Q Consensus        72 ~~~~~~~~   79 (512)
                      .++.+.+.
T Consensus       166 n~FGr~~~  173 (406)
T KOG3941|consen  166 NAFGRWNF  173 (406)
T ss_pred             HHhccccc
Confidence            66655444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.12  E-value=1.2  Score=34.59  Aligned_cols=125  Identities=10%  Similarity=0.062  Sum_probs=53.2

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH--HHHccCCH
Q 010342          290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR--GLFRLRRV  367 (512)
Q Consensus       290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~  367 (512)
                      .+.+..++|+.-|..+.+.+.-.-.....-.......+.|+...|...|.++-....+|.-..-..-|=.  .+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            3445556666666665554421112222222233344555566666656553322211111101111111  12345555


Q ss_pred             HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 010342          368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW  414 (512)
Q Consensus       368 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  414 (512)
                      +....-.+-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            55555555444433222222334444444555555555555555543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.04  E-value=1.1  Score=33.78  Aligned_cols=54  Identities=11%  Similarity=0.047  Sum_probs=26.8

Q ss_pred             HccCCHHHHHHHHHHHHhCCCCC---ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342          362 FRLRRVEEAKEVFNCMLGIGVVA---DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS  416 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  416 (512)
                      .+.|++++|.+.|+.+... .+.   ....--.|+.+|.+.+++++|...+++.++..
T Consensus        21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            3555555565555555543 111   12233444555555555555555555555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.99  E-value=4.1  Score=40.20  Aligned_cols=175  Identities=10%  Similarity=0.044  Sum_probs=92.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH----HHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010342           33 TTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV----RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA  108 (512)
Q Consensus        33 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (512)
                      ..-+..+.+...++-|+.+-+.-   +  .|..+...+.    .-+.+.|++++|...|-+.+.      -+.|.     
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~------~le~s-----  401 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG------FLEPS-----  401 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc------cCChH-----
Confidence            34455555556666666554432   2  2333333333    334457777777665544332      12222     


Q ss_pred             HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 010342          109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG  188 (512)
Q Consensus       109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~  188 (512)
                      .++.-|....+..+...+++.+.+.|. .+...-..|+.+|.+.++.+.-.+..+... .|..  ..-....+..+.+.+
T Consensus       402 ~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn  477 (933)
T KOG2114|consen  402 EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN  477 (933)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence            256666666666666777777776665 344444567777877777776665554433 2211  112334455555555


Q ss_pred             chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010342          189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM  235 (512)
Q Consensus       189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  235 (512)
                      -.++|.-+-....     .+......++.   ..+++++|.+.+..+
T Consensus       478 yl~~a~~LA~k~~-----~he~vl~ille---~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  478 YLDEAELLATKFK-----KHEWVLDILLE---DLHNYEEALRYISSL  516 (933)
T ss_pred             hHHHHHHHHHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence            5555554443321     23334444433   456777777777554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.85  E-value=1.3  Score=38.81  Aligned_cols=159  Identities=10%  Similarity=-0.044  Sum_probs=65.9

Q ss_pred             hcCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccC
Q 010342           41 RTGEMDVAYKVFDEMRHCG--VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG  118 (512)
Q Consensus        41 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  118 (512)
                      ...+.++|+..+.+-..+-  ..-...+|-.+..+..+.|.+++++...-..++...+..+....-..|..+.+++-+.-
T Consensus        18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~   97 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC   97 (518)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555443320  00011234444455556666665544332222222222222222334444555555555


Q ss_pred             ChhHHHHHHHhcCCC-CCCC---cchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCCcchHHHHHHHHhccCc
Q 010342          119 YVNEVFRIAEDMPQG-KSVN---EEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-----LTPSLVSYNSIVHGLCKHGG  189 (512)
Q Consensus       119 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~~~  189 (512)
                      ++.+++.+-..-... |..|   .-.....+..++...+.++++++.|+...+-.     ......++..|...|.+..|
T Consensus        98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D  177 (518)
T KOG1941|consen   98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD  177 (518)
T ss_pred             HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence            555555544432221 1111   01112223444455555555555555443311     01112345555555555555


Q ss_pred             hhHHHHHHHH
Q 010342          190 CMRAYQLLEE  199 (512)
Q Consensus       190 ~~~a~~~~~~  199 (512)
                      +++|.-+..+
T Consensus       178 ~~Kal~f~~k  187 (518)
T KOG1941|consen  178 YEKALFFPCK  187 (518)
T ss_pred             hhHHhhhhHh
Confidence            5555544443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.83  E-value=3.1  Score=37.93  Aligned_cols=65  Identities=14%  Similarity=0.112  Sum_probs=36.0

Q ss_pred             chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CcccHHHHHHHHHccCChhhHHHHHHHHHh
Q 010342          208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD---RTRICNIYLRALCLIKNPTELLNVLVFMLQ  272 (512)
Q Consensus       208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  272 (512)
                      ...++..++..+.+.|.++.|...+..+.......   .+.+....++.....|+..+|+..++....
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33455566666666666666666666655432111   234444455555566666666666655554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.76  E-value=0.57  Score=34.18  Aligned_cols=92  Identities=16%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh--hhHHHHHHHHHccC
Q 010342          288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAVLRGLFRLR  365 (512)
Q Consensus       288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~  365 (512)
                      +.+..|+.+.|++.|.+....-  +.....|+.-.+++.-.|+.++|++-+.+.++-.|-....  ..|..-...|-..|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            4566677888888877776543  5666777777777777777777777777766555433211  12222233455567


Q ss_pred             CHHHHHHHHHHHHhCC
Q 010342          366 RVEEAKEVFNCMLGIG  381 (512)
Q Consensus       366 ~~~~a~~~~~~~~~~~  381 (512)
                      +.+.|..-|+..-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            7777777777666655

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.72  E-value=1.4  Score=38.67  Aligned_cols=231  Identities=13%  Similarity=0.037  Sum_probs=129.9

Q ss_pred             HhccCCHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHccCChhhHHHHHHH----HHhcC-CCCChhhHHHHHHHHHh
Q 010342          219 LCGESDLEKARKVLQFMLSKKD--VDRTRICNIYLRALCLIKNPTELLNVLVF----MLQTQ-CQPDVITLNTVINGFCK  291 (512)
Q Consensus       219 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~  291 (512)
                      +....+.++++..+.+...+-.  ......+..+..+.++.|.+++++..--.    ..+.. -..--..|..+.+++.+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888888777664321  12234566666777777777766543211    11110 00012233444444444


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCC----ChhhHHHHHHHHHcc
Q 010342          292 MGRIEEALKVLNDMVAGKFCAP---DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP----GIVTYNAVLRGLFRL  364 (512)
Q Consensus       292 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~  364 (512)
                      .-++.+++.+-..-.......+   .......+..++...+.++++++.|+..++-..-..    ....+..|-..|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            4455555555444443332222   123334566677777788888888887764332222    235677788888888


Q ss_pred             CCHHHHHHHHHHHHh----CCCCCChHhH-----HHHHHHHHhcCCHHHHHHHHHHhhc----CCCCC-CHHhHHHHHHH
Q 010342          365 RRVEEAKEVFNCMLG----IGVVADSTTY-----AIVIDGLCESNQLDEAKRFWDDIVW----PSNIH-DNYVYAAMIKG  430 (512)
Q Consensus       365 ~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~  430 (512)
                      .|+++|.-+..+..+    .++..-..-|     ..+.-++...|.+..|.+..++..+    .|..+ .......+.+.
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            888888777666544    2222211122     2344566677888888887777643    33222 22345667778


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 010342          431 LCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       431 ~~~~g~~~~a~~~~~~~~~  449 (512)
                      |...|+.+.|..-|++...
T Consensus       256 yR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHhcccHhHHHHHHHHHHH
Confidence            8888888888777776654

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.67  E-value=0.39  Score=40.25  Aligned_cols=103  Identities=16%  Similarity=0.150  Sum_probs=57.8

Q ss_pred             CChHhHHHHHHHHHh-----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 010342          384 ADSTTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC  458 (512)
Q Consensus       384 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  458 (512)
                      -|..+|...+..+..     .+.++-....++.|.+-|+..|..+|+.|+..+-+..-                .|. ..
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv  127 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV  127 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence            355566666665543     24555566666677777777777777777766544321                111 11


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCC
Q 010342          459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG  505 (512)
Q Consensus       459 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  505 (512)
                      +......|-++  -+-++.++++|...|+.||..+-..|+.++++.+
T Consensus       128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~  172 (406)
T KOG3941|consen  128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN  172 (406)
T ss_pred             HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence            11111112111  1236667777777777777777777777776644

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.65  E-value=1.6  Score=34.03  Aligned_cols=135  Identities=16%  Similarity=0.226  Sum_probs=83.3

Q ss_pred             HHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 010342           14 HKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER   93 (512)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   93 (512)
                      .+.+..+.+.+++|+...+..++..+.+.|++.....    +...++-+|.......+-.+  .+....+.++-.+++.+
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence            4556667778889999999999999999998666544    44555566666554443222  23445566665666665


Q ss_pred             hhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010342           94 MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK  167 (512)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  167 (512)
                      +..         .+..+++.+...|++-+|.++..........    ....++.+..+.+|...-..+++-..+
T Consensus        88 L~~---------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~----~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 LGT---------AYEEIIEVLLSKGQVLEALRYARQYHKVDSV----PARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             hhh---------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccC----CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            431         2344777888888888888888775432221    122355555555555555555544444

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.57  E-value=2.9  Score=36.59  Aligned_cols=24  Identities=4%  Similarity=0.124  Sum_probs=13.1

Q ss_pred             hHHHHHHHHHhcCCCCChhhHHHH
Q 010342          262 ELLNVLVFMLQTQCQPDVITLNTV  285 (512)
Q Consensus       262 ~a~~~~~~~~~~~~~~~~~~~~~l  285 (512)
                      .+..+++.+.+.++++....|..+
T Consensus       200 r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  200 RVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHcCCccccccccHH
Confidence            455555566666666555554443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.50  E-value=3  Score=36.38  Aligned_cols=19  Identities=16%  Similarity=-0.085  Sum_probs=12.5

Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 010342          465 GACKLSMKREAYQILREMR  483 (512)
Q Consensus       465 ~~~~~g~~~~a~~~~~~m~  483 (512)
                      .+.+.+++++|.++++-..
T Consensus       255 ~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHhhcCHHHHHHHHHHHH
Confidence            3455777777777777543

It is also involved in sporulation [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.44  E-value=1.1  Score=32.88  Aligned_cols=53  Identities=21%  Similarity=0.259  Sum_probs=26.6

Q ss_pred             HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       396 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      ....|+++.|++.|.+.+..- +.....||.-..++.-+|+.++|.+-+++.++
T Consensus        53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            344455555555555554332 33444555555555555555555555555544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.43  E-value=0.64  Score=39.71  Aligned_cols=82  Identities=15%  Similarity=0.086  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL  110 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (512)
                      ++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|.++.+.+.++.++.|...+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            45667778888899999999999998875 45788899999999999999999999999888777777888876655444


Q ss_pred             HHH
Q 010342          111 VDS  113 (512)
Q Consensus       111 ~~~  113 (512)
                      .+.
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.42  E-value=1.7  Score=33.16  Aligned_cols=85  Identities=18%  Similarity=0.109  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342          283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF  362 (512)
Q Consensus       283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  362 (512)
                      ..++..+...+........++.+...+  ..+....+.++..|++.+ ..+.++.+..       .++......+++.|.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~   80 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence            345555555566666666666665554  245555566666665442 2333333321       112233334555555


Q ss_pred             ccCCHHHHHHHHHHH
Q 010342          363 RLRRVEEAKEVFNCM  377 (512)
Q Consensus       363 ~~~~~~~a~~~~~~~  377 (512)
                      +.+-++.+..++.++
T Consensus        81 ~~~l~~~~~~l~~k~   95 (140)
T smart00299       81 KAKLYEEAVELYKKD   95 (140)
T ss_pred             HcCcHHHHHHHHHhh
Confidence            555555555555443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.34  E-value=4.3  Score=37.58  Aligned_cols=61  Identities=20%  Similarity=0.213  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV  341 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  341 (512)
                      .-..+..++-+.|+.++|++.++++.+.............++.++...+.+.++..++.+.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3345677777889999999999999865421234556778899999999999999988774

The molecular function of this protein is uncertain.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.27  E-value=3.4  Score=36.07  Aligned_cols=62  Identities=16%  Similarity=0.196  Sum_probs=30.7

Q ss_pred             hHHHHHHHHhccCCHHH---HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc
Q 010342          211 TYKVLVEGLCGESDLEK---ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT  273 (512)
Q Consensus       211 ~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  273 (512)
                      ++..++.++...+..+.   |.++++.+.. ..+..+.++..-+..+.+.++.+.+.+.+..|...
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            45555566655555433   3334444422 22333444444555555555556666666665554

It is also involved in sporulation [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.26  E-value=1.9  Score=33.19  Aligned_cols=86  Identities=12%  Similarity=0.002  Sum_probs=44.2

Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 010342          362 FRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA  440 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  440 (512)
                      .+.++.+++..++..+.-.  .|... .-..-...+...|++.+|..+++++...  .|....-..|+..|....+-..-
T Consensus        21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~W   96 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSW   96 (160)
T ss_pred             HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHH
Confidence            4566777777777777663  33332 2222334456677777777777776543  23333334444444433322223


Q ss_pred             HHHHHHHHHCC
Q 010342          441 VHFLYELVDSG  451 (512)
Q Consensus       441 ~~~~~~~~~~~  451 (512)
                      ...-+++.+.+
T Consensus        97 r~~A~evle~~  107 (160)
T PF09613_consen   97 RRYADEVLESG  107 (160)
T ss_pred             HHHHHHHHhcC
Confidence            33333444443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.20  E-value=5.6  Score=38.77  Aligned_cols=151  Identities=10%  Similarity=0.025  Sum_probs=71.5

Q ss_pred             hcCCHHHHHHHHHhhccc------CCCCCChhhHHHHHHHHHccC-----CHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010342          327 NVGRIQEALNLLYQVMPQ------RGYSPGIVTYNAVLRGLFRLR-----RVEEAKEVFNCMLGIGVVADSTTYAIVIDG  395 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  395 (512)
                      ...+.+.|+.+|....+.      .+   .+.....+..+|.+..     +.+.|..++....+.| .|+....-..+..
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~  336 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE  336 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            455566666666554331      22   2234445555555422     5566777777776665 3343332222222


Q ss_pred             HHh-cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010342          396 LCE-SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC----RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS  470 (512)
Q Consensus       396 ~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  470 (512)
                      ... ..+...|.++|......|. ++  .+-.+..+|.    ...+.+.|..++++..+.| .|....-...+..+.. +
T Consensus       337 ~g~~~~d~~~A~~yy~~Aa~~G~-~~--A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~  411 (552)
T KOG1550|consen  337 TGTKERDYRRAFEYYSLAAKAGH-IL--AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G  411 (552)
T ss_pred             cCCccccHHHHHHHHHHHHHcCC-hH--HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence            222 2356677777777766552 22  2222222221    1235667777777777666 3222222222222222 5


Q ss_pred             CHHHHHHHHHHHHHCC
Q 010342          471 MKREAYQILREMRKNG  486 (512)
Q Consensus       471 ~~~~a~~~~~~m~~~~  486 (512)
                      .++.+.-.+..+...|
T Consensus       412 ~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  412 RYDTALALYLYLAELG  427 (552)
T ss_pred             cccHHHHHHHHHHHhh
Confidence            5555555554444443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.80  E-value=0.0064  Score=46.82  Aligned_cols=50  Identities=8%  Similarity=0.066  Sum_probs=24.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010342           35 LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN   84 (512)
Q Consensus        35 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   84 (512)
                      +++.+.+.+.+..+...++.+...+...+....+.++..|++.++.++..
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~   62 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLL   62 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHH
Confidence            34444445555555555555554433334445555555555555444443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.52  E-value=4  Score=34.30  Aligned_cols=202  Identities=18%  Similarity=0.141  Sum_probs=115.2

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342          279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL  358 (512)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  358 (512)
                      ...+......+...+.+..+...+...............+......+...+.+..+...+..........  ........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  136 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--DLAEALLA  136 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc--chHHHHHH
Confidence            3455555666666677777766666665410113445555556666666666777777766644221111  11122222


Q ss_pred             H-HHHccCCHHHHHHHHHHHHhCCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhc
Q 010342          359 R-GLFRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRS  434 (512)
Q Consensus       359 ~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  434 (512)
                      . .+...|+++.+...+.+......  ......+......+...++.+.+...+....... +. ....+..+...+...
T Consensus       137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHc
Confidence            2 56677777777777777754211  0122333334444566677777777777776543 23 355666777777777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ++++.+...+......... ....+..+...+...+..+++...+.+...
T Consensus       216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777777777664211 233444444444456667777777777665

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.46  E-value=0.21  Score=27.25  Aligned_cols=26  Identities=8%  Similarity=-0.139  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          458 CYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       458 ~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      +|..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36677788888888888888888754

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.38  E-value=0.13  Score=27.61  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=22.9

Q ss_pred             HHHHHhCCCCCChHhHHHHHHHHHhcCChhHHH
Q 010342           17 FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAY   49 (512)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   49 (512)
                      |++.++..+. |+.+|+.+...|...|++++|+
T Consensus         2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence            4555555333 6778888888888888888875

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.26  E-value=3.1  Score=32.34  Aligned_cols=23  Identities=13%  Similarity=0.057  Sum_probs=11.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhh
Q 010342          285 VINGFCKMGRIEEALKVLNDMVA  307 (512)
Q Consensus       285 l~~~~~~~~~~~~a~~~~~~~~~  307 (512)
                      |.-+-.+.|++.+|.+.|.++..
T Consensus       173 LglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         173 LGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HhHHHHhccchHHHHHHHHHHHc
Confidence            33334445555555555555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.23  E-value=0.24  Score=27.03  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=14.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHH
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEM   55 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m   55 (512)
                      |+.|...|.+.|++++|+++|++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555666666666666666666663

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=93.20  E-value=4.9  Score=34.42  Aligned_cols=57  Identities=16%  Similarity=0.218  Sum_probs=25.9

Q ss_pred             CCcchHhHHHHHHHHHccCChhHHHHHHHhcCCC-CCCCcchhHHHHHHHHHhcCChh
Q 010342          100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG-KSVNEEFACGHMIDSLCRSGRNH  156 (512)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~  156 (512)
                      ..++..+...+++.++..+++...++..+..... ++..|...|..+|......|+..
T Consensus       198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~  255 (292)
T PF13929_consen  198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE  255 (292)
T ss_pred             cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence            4444444444555555555555555544443322 33334444444444444444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.07  E-value=7.5  Score=36.14  Aligned_cols=61  Identities=15%  Similarity=0.065  Sum_probs=42.5

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342          355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP  415 (512)
Q Consensus       355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  415 (512)
                      ..+..++-+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..++.+--+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            44556666788888888888888764211 23346677888888888888888888876443

The molecular function of this protein is uncertain.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.04  E-value=7.2  Score=35.87  Aligned_cols=89  Identities=11%  Similarity=-0.017  Sum_probs=46.2

Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHH
Q 010342          148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK  227 (512)
Q Consensus       148 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  227 (512)
                      .+...|+++.+.+.+...... +.....+...+++.....|+++.|..+-+.|....+. ++.......-..-..|-+++
T Consensus       332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~  409 (831)
T PRK15180        332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK  409 (831)
T ss_pred             HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence            344556666666666554432 2224445566666666666666666666666654432 22222222222233455666


Q ss_pred             HHHHHHHHHhC
Q 010342          228 ARKVLQFMLSK  238 (512)
Q Consensus       228 a~~~~~~~~~~  238 (512)
                      +.-.|+++...
T Consensus       410 ~~~~wk~~~~~  420 (831)
T PRK15180        410 SYHYWKRVLLL  420 (831)
T ss_pred             HHHHHHHHhcc
Confidence            66666666543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.98  E-value=0.12  Score=27.78  Aligned_cols=20  Identities=20%  Similarity=0.243  Sum_probs=7.8

Q ss_pred             HHhHHHHHHHHHhcCCHHHH
Q 010342          421 NYVYAAMIKGLCRSGKIHEA  440 (512)
Q Consensus       421 ~~~~~~l~~~~~~~g~~~~a  440 (512)
                      ...|..+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            33333344444444443333

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=92.95  E-value=0.47  Score=32.46  Aligned_cols=44  Identities=14%  Similarity=0.138  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      +.+-++.+....+-|++....+.+++|.+.+++..|.++++-.+
T Consensus        26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34444444444555555555555555555555555555555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.63  E-value=0.54  Score=37.49  Aligned_cols=88  Identities=15%  Similarity=0.127  Sum_probs=60.6

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHH--HHH--HHH
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPN--VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-NSLTYSV--LVR--GVL   75 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~--l~~--~~~   75 (512)
                      .|++.|+.++|.+.|.++.+....|.  ...+-.+|......+++..+.....+....--.+ |...-+.  ...  .+.
T Consensus        45 ~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l  124 (177)
T PF10602_consen   45 HYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANL  124 (177)
T ss_pred             HHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            57889999999999999998743332  4467888999999999999999888876532222 2222222  112  234


Q ss_pred             hcCChhhHHHHHHHH
Q 010342           76 RTRDVERANVLMFKL   90 (512)
Q Consensus        76 ~~~~~~~a~~~~~~~   90 (512)
                      ..+++..|-+.+.+.
T Consensus       125 ~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  125 AQRDFKEAAELFLDS  139 (177)
T ss_pred             HhchHHHHHHHHHcc
Confidence            578888887766544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.54  E-value=0.32  Score=25.93  Aligned_cols=27  Identities=15%  Similarity=0.127  Sum_probs=13.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          458 CYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      +|..+..++...|++++|+..+++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344455555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.39  E-value=12  Score=36.85  Aligned_cols=110  Identities=11%  Similarity=0.015  Sum_probs=71.4

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCC---ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVP---NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV   80 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~   80 (512)
                      +.+.+.+++|.+..+.....  .|   -...+...|..+...|++++|-.+.-+|...    +..-|-.-+.-+...++.
T Consensus       366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l  439 (846)
T KOG2066|consen  366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL  439 (846)
T ss_pred             HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence            56677888888888765543  33   2346788888889999999999988888753    566676666666666665


Q ss_pred             hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHH
Q 010342           81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE  128 (512)
Q Consensus        81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  128 (512)
                      ...       ..-+|.. +...+...|..++..+.. .+...-.++..
T Consensus       440 ~~I-------a~~lPt~-~~rL~p~vYemvLve~L~-~~~~~F~e~i~  478 (846)
T KOG2066|consen  440 TDI-------APYLPTG-PPRLKPLVYEMVLVEFLA-SDVKGFLELIK  478 (846)
T ss_pred             chh-------hccCCCC-CcccCchHHHHHHHHHHH-HHHHHHHHHHH
Confidence            432       3334444 335566677777776666 44333333333

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.24  E-value=6.3  Score=33.20  Aligned_cols=192  Identities=9%  Similarity=0.039  Sum_probs=93.5

Q ss_pred             CChhhHHHHHHHHHHcCCCC---CcchHHHHHHHHhccCchhHHHHHHHHHHhC---CC--CCchhhHHHHHHHHhccCC
Q 010342          153 GRNHGASRVVYVMRKRGLTP---SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF---GY--LPSEHTYKVLVEGLCGESD  224 (512)
Q Consensus       153 ~~~~~a~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~  224 (512)
                      .++++|+.-|++..+.....   ...+.-.++....+.+++++..+.|.++...   .+  ..+..+.++++.......+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            34555555555555431111   1112334555556666666666655555421   11  1233445555555555555


Q ss_pred             HHHHHHHHHHHHh-----CCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCC-----------ChhhHHHHHHH
Q 010342          225 LEKARKVLQFMLS-----KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP-----------DVITLNTVING  288 (512)
Q Consensus       225 ~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~  288 (512)
                      .+.-..+++.-.+     ++...+..+-..+...|...+.+.+...++.++..+-...           -...|..-|+.
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm  200 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM  200 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence            4444444433221     1122222333445555555566666655555554321110           12355666777


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH----HHHHhhcCCHHHHHHHHHhhccc
Q 010342          289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI----IFGLLNVGRIQEALNLLYQVMPQ  344 (512)
Q Consensus       289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~  344 (512)
                      |....+-.....++++.......-|.+.....+    .....+.|++++|..-|.+..+.
T Consensus       201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence            777777666667777665433324444433332    12345677777777666665543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.96  E-value=0.41  Score=25.41  Aligned_cols=26  Identities=12%  Similarity=0.102  Sum_probs=12.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          459 YNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       459 ~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      |..+...+...|++++|++.+++..+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44444555555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.91  E-value=0.0081  Score=46.24  Aligned_cols=46  Identities=13%  Similarity=-0.005  Sum_probs=17.6

Q ss_pred             HHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHH
Q 010342          183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA  228 (512)
Q Consensus       183 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  228 (512)
                      .+.+.+.......+++.+...+...+....+.++..|++.++.+..
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l   61 (143)
T PF00637_consen   16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKL   61 (143)
T ss_dssp             HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHH
T ss_pred             HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHH
Confidence            3333444444444444444333233334444444444444333333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.67  E-value=7.2  Score=32.69  Aligned_cols=200  Identities=19%  Similarity=0.117  Sum_probs=118.5

Q ss_pred             cHHHHHHHHHccCChhhHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHH-
Q 010342          246 ICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF-  323 (512)
Q Consensus       246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-  323 (512)
                      ........+...+....+...+...... ........+......+...+.+..+...+........  .+......... 
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  138 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP--DPDLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC--CcchHHHHHHHH
Confidence            3344444444455555555444444431 1223444555555666666677777777777765432  11122222222 


Q ss_pred             HHhhcCCHHHHHHHHHhhcccCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcC
Q 010342          324 GLLNVGRIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESN  400 (512)
Q Consensus       324 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  400 (512)
                      .+...|+++.|...+.+... ...  ......+......+...++.+.+...+....... +. ....+..+...+...+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence            67777888888887777532 211  1122333333344566778888888888887753 33 3567777788888888


Q ss_pred             CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       401 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +++.+...+....... +.....+..+...+...+..+.+...+.+....
T Consensus       217 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         217 KYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             cHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8888888888887643 222344555555555667788888888887765

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=91.60  E-value=3.4  Score=28.82  Aligned_cols=44  Identities=14%  Similarity=0.123  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      ..+-++.+....+-|++.+..+.+++|.|.+++..|.++++-.+
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33334444444455555555555555555555555555555544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.57  E-value=1.8  Score=39.54  Aligned_cols=126  Identities=15%  Similarity=0.101  Sum_probs=70.0

Q ss_pred             HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342          322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ  401 (512)
Q Consensus       322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  401 (512)
                      |.--...|+.-.|-+-+...+......|+.....+.  .....|+++.+...+...... +.....+..++++...+.|+
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence            334445666666666555555555444444333333  345567777777666555442 23344556666666667777


Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      ++.|...-+-|....+ .+......-....-..|-++++...|+++...+
T Consensus       373 ~~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        373 WREALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            7777776666654432 233343333333444566677777776666554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.08  E-value=5.9  Score=30.63  Aligned_cols=18  Identities=6%  Similarity=-0.010  Sum_probs=8.9

Q ss_pred             HccCCHHHHHHHHHHHHh
Q 010342          362 FRLRRVEEAKEVFNCMLG  379 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~  379 (512)
                      .+.|++.+|..+|+++.+
T Consensus        55 i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   55 IVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HHhCCHHHHHHHHHHHhc
Confidence            344555555555555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.02  E-value=5.6  Score=30.22  Aligned_cols=53  Identities=13%  Similarity=0.092  Sum_probs=33.4

Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342          362 FRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPS  416 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  416 (512)
                      ...++.+++..+++.|.-.  .|+.. .-..-...+...|++++|.++++++.+.+
T Consensus        21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            3477788888888777764  33322 22223344667788888888888876543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=90.91  E-value=14  Score=34.49  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=65.4

Q ss_pred             CCChHhH-HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHH-CCCCCChh
Q 010342          383 VADSTTY-AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL---CRSGKIHEAVHFLYELVD-SGVTPNIV  457 (512)
Q Consensus       383 ~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~-~~~~p~~~  457 (512)
                      .|+..++ +.+++-+...|-..+|..++..+.... +|+...|..++..=   ..+| ..-+.+.++.+.. -|  .++.
T Consensus       456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~  531 (568)
T KOG2396|consen  456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD  531 (568)
T ss_pred             CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence            4454443 456677777777888888888876553 66667777776532   2223 6667777777765 35  5667


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          458 CYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       458 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .|.-.+.--...|..+.+-.++.++.+
T Consensus       532 lw~~y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  532 LWMDYMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             HHHHHHHhhccCCCcccccHHHHHHHH
Confidence            777777776778888888887766654

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=90.67  E-value=10  Score=32.63  Aligned_cols=65  Identities=15%  Similarity=0.063  Sum_probs=34.1

Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWD  410 (512)
Q Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  410 (512)
                      +..++..+...++..++..+++.+-.++++..... +...|...|..+++.....|+..-...+..
T Consensus       197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            33445555555555555556666555555555443 334445555555555555555544444443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.46  E-value=7.1  Score=33.78  Aligned_cols=101  Identities=17%  Similarity=0.151  Sum_probs=54.8

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhH
Q 010342          277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC--APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY  354 (512)
Q Consensus       277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  354 (512)
                      ....+...++..-....+++.+...+-++......  .++. +-.++++.+ ..-++++++.++..-+ ..|+-||..++
T Consensus        62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npI-qYGiF~dqf~~  138 (418)
T KOG4570|consen   62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPI-QYGIFPDQFTF  138 (418)
T ss_pred             cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcc-hhccccchhhH
Confidence            34444445554444556666666666666543210  0111 111222222 2234556666665533 66777777777


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342          355 NAVLRGLFRLRRVEEAKEVFNCMLGI  380 (512)
Q Consensus       355 ~~l~~~~~~~~~~~~a~~~~~~~~~~  380 (512)
                      +.+|..+.+.+++.+|..+.-.|...
T Consensus       139 c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  139 CLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            77777777777777777766665543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.22  E-value=3  Score=39.42  Aligned_cols=100  Identities=18%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             ccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHH
Q 010342          186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN  265 (512)
Q Consensus       186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  265 (512)
                      +.|+.+.|.++..+.      .+..-|..|.++....|++..|.+.|.....         +..++..+...|+.+....
T Consensus       649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            455666666554442      3344566666666666666666666655432         3344555555555555555


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010342          266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV  306 (512)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  306 (512)
                      +-....+.|.. |     .-.-+|...|+++++.+++..-.
T Consensus       714 la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~t~  748 (794)
T KOG0276|consen  714 LASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLISTQ  748 (794)
T ss_pred             HHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence            54445444432 2     22334556677777777776543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.88  E-value=8.1  Score=30.29  Aligned_cols=35  Identities=9%  Similarity=0.200  Sum_probs=20.3

Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342           51 VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV   85 (512)
Q Consensus        51 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   85 (512)
                      .+..+.+.+++|+...+..++..+.+.|.+....+
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q   50 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ   50 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            33344445666666666666666666666554433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.78  E-value=1.1  Score=23.77  Aligned_cols=28  Identities=14%  Similarity=0.282  Sum_probs=18.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +|..+..+|...|++++|+..|++.++.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            4566666677777777777777666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.74  E-value=17  Score=33.75  Aligned_cols=458  Identities=12%  Similarity=0.028  Sum_probs=211.5

Q ss_pred             HHHHhcC--ChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHH-HhcCChhhHHHHHHHHHHHhhhcCCC-CcchHhHHHH
Q 010342           37 HGYCRTG--EMDVAYKVFDEMRHCGVLPN--SLTYSVLVRGV-LRTRDVERANVLMFKLWERMKEEEDL-SVNNAAFANL  110 (512)
Q Consensus        37 ~~~~~~~--~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~l  110 (512)
                      ..+-..|  +..++++.++......++--  ..+...+...+ .-..+++.|..-+++.|..+..-+.. .....+++.|
T Consensus        15 e~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlL   94 (629)
T KOG2300|consen   15 EHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLL   94 (629)
T ss_pred             HHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHH
Confidence            3444555  55667777776665432111  12333333333 33677888888888888766554433 3333456667


Q ss_pred             HHHHHccC-ChhHHHHHHHhcCCCCCCCcchh---HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh-
Q 010342          111 VDSLCREG-YVNEVFRIAEDMPQGKSVNEEFA---CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC-  185 (512)
Q Consensus       111 ~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~-  185 (512)
                      .+.|.... .+..+..++....+-........   ...|+..+.-..++..|.+++.---.. -.|-...|..++..+. 
T Consensus        95 a~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~  173 (629)
T KOG2300|consen   95 AHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSM  173 (629)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHH
Confidence            77777665 66677766665433211111122   223455666677888887774332221 1112223332222211 


Q ss_pred             --------ccCchhHHHHHHHHHHhCCCCCchhh--------HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 010342          186 --------KHGGCMRAYQLLEEGIQFGYLPSEHT--------YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI  249 (512)
Q Consensus       186 --------~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  249 (512)
                              +..++..+.....++.+. ..+|..-        .+.-+..|...|+...+...++++...-....+..+..
T Consensus       174 ~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h  252 (629)
T KOG2300|consen  174 LMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGH  252 (629)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCc
Confidence                    122334444444555543 3444322        12223344566777777766666644211111100000


Q ss_pred             HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH-------HHHHHHhhCCCCCCcH-----HH
Q 010342          250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL-------KVLNDMVAGKFCAPDA-----VT  317 (512)
Q Consensus       250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-------~~~~~~~~~~~~~~~~-----~~  317 (512)
                      -...   .|.+  -...+..+.+..+  ..-+|......-...|-+++|.       ...++..+...+.|-.     .+
T Consensus       253 ~e~i---lgsp--s~~l~~wlpkeqi--caLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~  325 (629)
T KOG2300|consen  253 DEKI---LGSP--SPILFEWLPKEQI--CALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL  325 (629)
T ss_pred             cccc---cCCC--ChHHHhhccHhhh--HhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence            0000   0000  0001111100000  0001100000001123333333       3333333322111111     11


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhh-------HHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCChHh-
Q 010342          318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT-------YNAVL-RGLFRLRRVEEAKEVFNCMLGIGVVADSTT-  388 (512)
Q Consensus       318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-  388 (512)
                      ...++.+-.-.|++.+|++-+.++..-..-.|.+..       ...++ ..++..+.++.|+.-|....+.--..|... 
T Consensus       326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~  405 (629)
T KOG2300|consen  326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF  405 (629)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence            222233334578888888877765443333444211       12222 334557788888888877766432333332 


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH----------HHHHHHHhcCCHHHHHHHHHHHHHCC-----C
Q 010342          389 -YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA----------AMIKGLCRSGKIHEAVHFLYELVDSG-----V  452 (512)
Q Consensus       389 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~g~~~~a~~~~~~~~~~~-----~  452 (512)
                       -..+.-.|.+.|+-+.-.++++.+-    +++..++.          .-.--....+++.+|..++.+-.+-.     .
T Consensus       406 ~nlnlAi~YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~  481 (629)
T KOG2300|consen  406 CNLNLAISYLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLN  481 (629)
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHH
Confidence             2345567888888777777777664    22222111          11111235789999999988876531     1


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCChHH--HH--HHHHhhccCCCC
Q 010342          453 TPNIVCYNVVIDGACKLSMKREAYQILREMR-KNGLNPDAVT--WR--ILDKLHGNRGND  507 (512)
Q Consensus       453 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~--~~--~l~~~~~~~g~~  507 (512)
                      +...-....|...+...|+..++.+.+.-.. -..-.||..+  |.  .+-++|...|++
T Consensus       482 rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~  541 (629)
T KOG2300|consen  482 RLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEK  541 (629)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcc
Confidence            1111223344455667888888887765543 2223456432  32  222555555553

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.62  E-value=23  Score=35.20  Aligned_cols=187  Identities=16%  Similarity=0.061  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHh-CCCCCC--hHhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhcCChhh
Q 010342           12 EAHKLFFDMKS-RGHVPN--VVSYTTLIHGYC-RTGEMDVAYKVFDEMRHCGVLPNSL-----TYSVLVRGVLRTRDVER   82 (512)
Q Consensus        12 ~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~l~~~~~~~~~~~~   82 (512)
                      -|++.++.+.+ ..++|.  ..++..+...+. ...+++.|+..+++....--.++..     +...++..+.+.+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            46777777773 333332  335667777776 6788999999999885543222222     2233456666666555 


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchHhHHHH-HHHHHccCChhHHHHHHHhcCCCC---CCCcchhHHHHHHHHH--hcCChh
Q 010342           83 ANVLMFKLWERMKEEEDLSVNNAAFANL-VDSLCREGYVNEVFRIAEDMPQGK---SVNEEFACGHMIDSLC--RSGRNH  156 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~  156 (512)
                      |...+.+.++..... +..+-...|.-+ +..+...+++..|.+.++.+....   ..|....+..++.+..  +.+..+
T Consensus       118 a~~~l~~~I~~~~~~-~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 ALKNLDKAIEDSETY-GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence            888888877766553 333334455554 444444489999999988865432   2344444444554443  456567


Q ss_pred             hHHHHHHHHHHcCC---------CCCcchHHHHHHHHh--ccCchhHHHHHHHHH
Q 010342          157 GASRVVYVMRKRGL---------TPSLVSYNSIVHGLC--KHGGCMRAYQLLEEG  200 (512)
Q Consensus       157 ~a~~~~~~~~~~g~---------~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~  200 (512)
                      ++.+.+..+.....         .|...+|..+++.++  ..|+++.+.+.++++
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777776643211         234557777777655  467766666665554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.61  E-value=1.1  Score=23.65  Aligned_cols=28  Identities=11%  Similarity=0.268  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .+..+...+...|++++|++.|++.++.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4556666777777777777777776654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.33  E-value=5.5  Score=32.12  Aligned_cols=76  Identities=16%  Similarity=0.141  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHH
Q 010342           46 DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF  124 (512)
Q Consensus        46 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  124 (512)
                      +.|++.|-.+...+.--++.....+...| ...+.++++.++.+.++....  +-.+++..+.+|+..+.+.|+++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            45666666666554333444443433333 355666666666666554332  22555566666666666666666553

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=89.01  E-value=47  Score=37.87  Aligned_cols=324  Identities=11%  Similarity=0.008  Sum_probs=172.2

Q ss_pred             HHHHHHHccCChhHHHHHHHhcCCCCC--CCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010342          109 NLVDSLCREGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK  186 (512)
Q Consensus       109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  186 (512)
                      .+..+-.+++.+.+|...+++-.....  ......+..+...|..-+++|+...+...-..     +...+. -|-....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence            455566788999999999998422111  11223445555699999999998887764221     223333 3444567


Q ss_pred             cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 010342          187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV  266 (512)
Q Consensus       187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  266 (512)
                      .|++..|...|+.+.+.+ ++...+++-++......|.++......+.............++.-..+.-+.++++.....
T Consensus      1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred             hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence            899999999999999765 4557788888888888888888887666665443333344555556666777888777766


Q ss_pred             HHHHHhcCCCCChhhHHHH--HHHHHhc--CCHHHHHHHHHHHhhCCC--------CCCcHHHHHHHHHHHhhcCCHHHH
Q 010342          267 LVFMLQTQCQPDVITLNTV--INGFCKM--GRIEEALKVLNDMVAGKF--------CAPDAVTFTTIIFGLLNVGRIQEA  334 (512)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a  334 (512)
                      +.   ..    +..+|...  .....+.  .+.-.-.+..+.+.+.-.        ...-...|..++....-..-....
T Consensus      1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred             hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            55   11    22233322  2222222  111111122222221110        011123444444443322211111


Q ss_pred             HHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHH-HHHhC----CC-CCChHhHHHHHHHHHhcCCHHHHHHH
Q 010342          335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN-CMLGI----GV-VADSTTYAIVIDGLCESNQLDEAKRF  408 (512)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~  408 (512)
                      .. +...-......-+..-|..-+..-....+..+-+--++ .+...    +. .--..+|-...+...+.|.++.|...
T Consensus      1614 ~~-l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 EE-LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred             HH-hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence            11 11111111111111122222221111111111111111 11111    11 11234677777777888999999887


Q ss_pred             HHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +-.+.+.+ .|  ..+--.+.-+...|+...|+.++++.++.
T Consensus      1693 ll~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1693 LLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred             HHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            77776554 33  35556667778889999999999888754

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.77  E-value=3.8  Score=28.59  Aligned_cols=61  Identities=10%  Similarity=0.162  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 010342           11 GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR   72 (512)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~   72 (512)
                      -+.++-++.+...+..|++....+.+.+|-|-+++..|.++|+-.+.+- .+....|..+++
T Consensus        27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq   87 (108)
T PF02284_consen   27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence            3556666666667777788888888888888888888888888776531 222225655544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=88.51  E-value=5.2  Score=27.64  Aligned_cols=63  Identities=10%  Similarity=0.154  Sum_probs=46.9

Q ss_pred             cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 010342            9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR   72 (512)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~   72 (512)
                      +.-++++-++.+...+..|++....+.+++|-|-+++.-|.++|+-.+.+- ..+...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence            556777788888888888888888889999999999999999998777431 123445655544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.50  E-value=5.2  Score=32.24  Aligned_cols=75  Identities=12%  Similarity=0.047  Sum_probs=60.7

Q ss_pred             cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCChhhHH
Q 010342            9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC---GVLPNSLTYSVLVRGVLRTRDVERAN   84 (512)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~   84 (512)
                      .-+.|.+.|-.+...+.--++.....|...|. ..+.+++..++-+..+.   +-.+|+..+.+|...+.+.++++.|.
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            44678888888888776667777777777777 66889999999988763   33678999999999999999998873

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.31  E-value=1.5  Score=24.56  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      +++.|...|...|++++|..++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            44445555555555555555554443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.24  E-value=19  Score=32.31  Aligned_cols=118  Identities=5%  Similarity=0.021  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHH
Q 010342          368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR---SGKIHEAVHFL  444 (512)
Q Consensus       368 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~  444 (512)
                      +.-+.++++.++.+ +.+......++..+.+..+.++..+-|+++.... +.+...|...+.....   .-.++....+|
T Consensus        48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y  125 (321)
T PF08424_consen   48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY  125 (321)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            44555666665552 3445555666666666666666666677766543 3355566666654433   22345555555


Q ss_pred             HHHHHC------CC----CCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010342          445 YELVDS------GV----TPNIV-------CYNVVIDGACKLSMKREAYQILREMRKNGL  487 (512)
Q Consensus       445 ~~~~~~------~~----~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  487 (512)
                      .+.++.      +.    .+...       .+..+...+..+|..+.|..+++.+.+.++
T Consensus       126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            443321      11    00011       122233334457777777777777776555

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.14  E-value=9  Score=36.47  Aligned_cols=99  Identities=14%  Similarity=0.116  Sum_probs=52.5

Q ss_pred             HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  404 (512)
                      ..+.|+.+.|.++..+       ..+..-|..|..+....+++..|.+.|.....         |..|+-.+...|+-+.
T Consensus       647 al~lgrl~iA~~la~e-------~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~  710 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVE-------ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG  710 (794)
T ss_pred             hhhcCcHHHHHHHHHh-------hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence            3455666666665544       12445566666666666666666666655443         3345555555565555


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY  445 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  445 (512)
                      ...+-....+.| ..|     .-.-+|...|+++++.+++.
T Consensus       711 l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  711 LAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             HHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHH
Confidence            555544444444 222     22234445566666666553

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=88.12  E-value=32  Score=34.81  Aligned_cols=226  Identities=14%  Similarity=0.019  Sum_probs=120.0

Q ss_pred             ccCchhHHHHHHHHHHhCCCCCchh-------hHHHHHH-HHhccCCHHHHHHHHHHHHhCC----CCCCcccHHHHHHH
Q 010342          186 KHGGCMRAYQLLEEGIQFGYLPSEH-------TYKVLVE-GLCGESDLEKARKVLQFMLSKK----DVDRTRICNIYLRA  253 (512)
Q Consensus       186 ~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~  253 (512)
                      ...++.+|..++.++...-..|+..       .++.+-. .....|+++.|.++-+.....-    ..+....+..+..+
T Consensus       427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a  506 (894)
T COG2909         427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA  506 (894)
T ss_pred             HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence            4678888888888876543233221       2332222 2345788999998888776532    12223456666777


Q ss_pred             HHccCChhhHHHHHHHHHhcCCCCChhhHHHHH-----HHHHhcCC--HHHHHHHHHHHhhC-----CCCCCcHHHHHHH
Q 010342          254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI-----NGFCKMGR--IEEALKVLNDMVAG-----KFCAPDAVTFTTI  321 (512)
Q Consensus       254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~-----~~~~~~~~~~~~l  321 (512)
                      ..-.|++++|..+.....+..-..+...+....     ..+...|.  .......|......     ....+-..++..+
T Consensus       507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l  586 (894)
T COG2909         507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL  586 (894)
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence            788899999998887766553333444333322     23445563  23333333333221     1112233455555


Q ss_pred             HHHHhhcCC-HHHHHHHHHhhcccCCCCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCC----ChHhHHHHHH
Q 010342          322 IFGLLNVGR-IQEALNLLYQVMPQRGYSPGIVTY--NAVLRGLFRLRRVEEAKEVFNCMLGIGVVA----DSTTYAIVID  394 (512)
Q Consensus       322 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~  394 (512)
                      ..++.+... ..++..-+ +........|-...+  ..++......|+.++|...++++......+    +..+....+.
T Consensus       587 l~~~~r~~~~~~ear~~~-~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~  665 (894)
T COG2909         587 LRAWLRLDLAEAEARLGI-EVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK  665 (894)
T ss_pred             HHHHHHHhhhhHHhhhcc-hhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence            556555221 12222222 111112112222222  366778888999999999999988743333    2222222222


Q ss_pred             --HHHhcCCHHHHHHHHHHh
Q 010342          395 --GLCESNQLDEAKRFWDDI  412 (512)
Q Consensus       395 --~~~~~g~~~~a~~~~~~~  412 (512)
                        .....|+.+.+.....+-
T Consensus       666 ~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         666 LILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHhcccCCHHHHHHHHHhc
Confidence              234567777777666653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=87.87  E-value=0.91  Score=39.32  Aligned_cols=89  Identities=10%  Similarity=-0.074  Sum_probs=60.6

Q ss_pred             ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342            2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE   81 (512)
Q Consensus         2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~   81 (512)
                      +-|+++|++++|++.|.+-+...+. |++++..-..+|.+...+..|..-.+.....+ ..=...|+.-+.+-...|...
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence            3578999999999999988776322 78888888888998888887776666555421 011224555555555666777


Q ss_pred             hHHHHHHHHHH
Q 010342           82 RANVLMFKLWE   92 (512)
Q Consensus        82 ~a~~~~~~~~~   92 (512)
                      +|..-++.+++
T Consensus       183 EAKkD~E~vL~  193 (536)
T KOG4648|consen  183 EAKKDCETVLA  193 (536)
T ss_pred             HHHHhHHHHHh
Confidence            77666655554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.83  E-value=1.5  Score=24.60  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=17.3

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010342           30 VSYTTLIHGYCRTGEMDVAYKVFDEMRH   57 (512)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~   57 (512)
                      .+++.|...|...|++++|+.++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3566666666666777777666666543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.45  E-value=25  Score=32.96  Aligned_cols=166  Identities=10%  Similarity=0.034  Sum_probs=66.8

Q ss_pred             chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 010342          208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN  287 (512)
Q Consensus       208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  287 (512)
                      |.....+++..+.....+.-.+.+..++..-+  .+.-.+..++++|... ..+....+++++.+..+. |+..-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            33344444444444444444444444444321  1222344444444444 334444444444444332 2222233333


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc
Q 010342          288 GFCKMGRIEEALKVLNDMVAGKFCAP----DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR  363 (512)
Q Consensus       288 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  363 (512)
                      .|.+ ++.+.+...|.++..+-..+.    -...|..+....  ..+.+..+.+..+.-...|...-...+.-+-..|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            3333 455555555544443221000    011222222111  233344444444433333333334444444455555


Q ss_pred             cCCHHHHHHHHHHHHhC
Q 010342          364 LRRVEEAKEVFNCMLGI  380 (512)
Q Consensus       364 ~~~~~~a~~~~~~~~~~  380 (512)
                      ..++++|++++..+.+.
T Consensus       218 ~eN~~eai~Ilk~il~~  234 (711)
T COG1747         218 NENWTEAIRILKHILEH  234 (711)
T ss_pred             ccCHHHHHHHHHHHhhh
Confidence            55566666665555443

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=87.30  E-value=6.1  Score=33.56  Aligned_cols=88  Identities=14%  Similarity=0.174  Sum_probs=56.1

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 010342          215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK---  291 (512)
Q Consensus       215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  291 (512)
                      =|.+++..++|.++..+.-+.-+.....++.+...-|-.|.+.+.+..+.++-...+...-.-+...|.+++..|..   
T Consensus        89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL  168 (309)
T PF07163_consen   89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL  168 (309)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence            35666677777777666655554444455566666677777777777777776666654333344446666555543   


Q ss_pred             --cCCHHHHHHHH
Q 010342          292 --MGRIEEALKVL  302 (512)
Q Consensus       292 --~~~~~~a~~~~  302 (512)
                        .|.+++|+++.
T Consensus       169 lPLG~~~eAeelv  181 (309)
T PF07163_consen  169 LPLGHFSEAEELV  181 (309)
T ss_pred             hccccHHHHHHHH
Confidence              58888888877

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.19  E-value=11  Score=32.69  Aligned_cols=105  Identities=19%  Similarity=0.246  Sum_probs=69.6

Q ss_pred             CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhh
Q 010342          204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR--TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT  281 (512)
Q Consensus       204 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  281 (512)
                      |.+....+...++..-....+++.+...+-++........  ..+....++. +-.-++++++.++..-++.|+-||-.+
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence            4444555555555555556677777777766653321111  1122222333 334466788888888888899999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010342          282 LNTVINGFCKMGRIEEALKVLNDMVAGK  309 (512)
Q Consensus       282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  309 (512)
                      +..+|+.+.+.+++.+|.++...|....
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999988887776544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.10  E-value=1.2  Score=23.64  Aligned_cols=25  Identities=16%  Similarity=0.018  Sum_probs=11.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          459 YNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       459 ~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      |..+...+...|++++|.+.|++..
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~   28 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344444444455555555444444

...

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=87.00  E-value=2.8  Score=30.43  Aligned_cols=43  Identities=14%  Similarity=0.132  Sum_probs=21.1

Q ss_pred             HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      .+-+..+..-++.|+..+...-+++|.+.+|+..|.++|+-+.
T Consensus        69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK  111 (149)
T KOG4077|consen   69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK  111 (149)
T ss_pred             HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3334444444445555555555555555555555555554443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=86.76  E-value=45  Score=35.07  Aligned_cols=53  Identities=15%  Similarity=0.056  Sum_probs=26.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCChH--hHHHHHHHHHhcCCHHHHHHHHHHh
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADST--TYAIVIDGLCESNQLDEAKRFWDDI  412 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~  412 (512)
                      .+.+|..+|++.+|..+..++...   -+..  +-..|+.-+...+++-+|-++..+.
T Consensus       971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            445555566666666665554321   1111  1234455555555555555555554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.65  E-value=12  Score=28.48  Aligned_cols=53  Identities=17%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342          326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI  380 (512)
Q Consensus       326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  380 (512)
                      ...++.+++..++..+---..-.+...++...+  +...|++++|..+|+++.+.
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS   73 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence            346666666666655322222223334444333  45667777777777777664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.49  E-value=7  Score=31.38  Aligned_cols=87  Identities=13%  Similarity=0.059  Sum_probs=54.0

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHh
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVV------SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-NSLTYSVLVRGVLR   76 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~   76 (512)
                      +++.|++++|..-|.+.++.  .|...      .|..-..++.+.+.++.|+.--.+..+.+  | ....+..-..+|.+
T Consensus       105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK  180 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence            56778888888888887776  33222      35555566777888888877777777643  2 11222222345666


Q ss_pred             cCChhhHHHHHHHHHHHh
Q 010342           77 TRDVERANVLMFKLWERM   94 (512)
Q Consensus        77 ~~~~~~a~~~~~~~~~~~   94 (512)
                      ...++.|+.-|.++++..
T Consensus       181 ~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESD  198 (271)
T ss_pred             hhhHHHHHHHHHHHHHhC
Confidence            667777777666665543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.27  E-value=15  Score=29.11  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          439 EAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       439 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      +|.+.|++..+.  .|+..+|+.-+...
T Consensus        98 kA~~~FqkAv~~--~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   98 KATEYFQKAVDE--DPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence            333334433332  45555555444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=85.72  E-value=13  Score=27.79  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=44.8

Q ss_pred             CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 010342          418 IHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVD-SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV  492 (512)
Q Consensus       418 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  492 (512)
                      .++..+--.+.+++.+..+   ..+.+.+++.+.+ ....-.......|.-++.+.++++++.++++.+.+  ..||..
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~  105 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR  105 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence            3444555556677766543   4456677777765 22222334555666777788888888888887776  455543

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=85.57  E-value=74  Score=36.49  Aligned_cols=326  Identities=11%  Similarity=-0.016  Sum_probs=161.3

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHH
Q 010342           71 VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC  150 (512)
Q Consensus        71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  150 (512)
                      ..+-.+.+.+.+|...+++-..   ..........-|..+...|..-+++|...-+...-..     +. ....-|....
T Consensus      1390 a~aSfrc~~y~RalmylEs~~~---~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e 1460 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRS---TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHE 1460 (2382)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHH
Confidence            3455566777777665544310   0111122223344455589999998887777663111     11 2223556677


Q ss_pred             hcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHH-HHHHHhccCCHHHHH
Q 010342          151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV-LVEGLCGESDLEKAR  229 (512)
Q Consensus       151 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~  229 (512)
                      ..|++..|...|+.+.+.+.. ....++.++......|.++......+-.... ..+....++. =+.+.-+.++++...
T Consensus      1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred             hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence            889999999999999987432 4667887777777777777777655544432 1233333332 233445677777766


Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHccCChh--hHHHHHHHHHhcCCCC---------ChhhHHHHHHHHHhcCCHHHH
Q 010342          230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPT--ELLNVLVFMLQTQCQP---------DVITLNTVINGFCKMGRIEEA  298 (512)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a  298 (512)
                      ..+.   ..+.....  ...+.....+...-+  .-.+.++.+.+.-+.|         -...|..++....-. +.+.-
T Consensus      1539 ~~l~---~~n~e~w~--~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~ 1612 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWS--VESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENS 1612 (2382)
T ss_pred             hhhh---cccccchh--HHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHH
Confidence            6654   11111111  111233333222221  1112333333221111         012333333332221 11111


Q ss_pred             HHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC----CC-CCChhhHHHHHHHHHccCCHHHHHHH
Q 010342          299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR----GY-SPGIVTYNAVLRGLFRLRRVEEAKEV  373 (512)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~  373 (512)
                      .+.+...........+..-|..-+..-....+..+-+-.+++.+-..    +. .--..+|....+..-+.|+++.|...
T Consensus      1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred             HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence            11111111111001111122222222111112222222222222111    11 12245677778877789999999888


Q ss_pred             HHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 010342          374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS  416 (512)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  416 (512)
                      +-...+.+ .  +..+--........|+...|..++++.+...
T Consensus      1693 ll~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            77776655 2  3445556677888999999999999887443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.51  E-value=20  Score=29.81  Aligned_cols=25  Identities=8%  Similarity=0.038  Sum_probs=16.2

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCC
Q 010342          215 LVEGLCGESDLEKARKVLQFMLSKK  239 (512)
Q Consensus       215 l~~~~~~~g~~~~a~~~~~~~~~~~  239 (512)
                      +....+..+++.+|.++|+++....
T Consensus       160 vA~yaa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  160 VAQYAAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344455677788888888776543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=85.14  E-value=1.6  Score=22.74  Aligned_cols=21  Identities=19%  Similarity=0.485  Sum_probs=8.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 010342          429 KGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       429 ~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      .++.+.|++++|.+.|+++++
T Consensus         8 ~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    8 RCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHH
Confidence            333334444444444444433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=84.82  E-value=3.3  Score=21.78  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +|..+...|...|++++|.+.|++.++.
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5666777788888888888888777653

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=84.81  E-value=1.6  Score=22.82  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=14.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhC
Q 010342           34 TLIHGYCRTGEMDVAYKVFDEMRHC   58 (512)
Q Consensus        34 ~l~~~~~~~~~~~~a~~~~~~m~~~   58 (512)
                      .+..++.+.|++++|.+.|+++.+.
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3445555566666666666665553

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.75  E-value=1.8  Score=21.39  Aligned_cols=22  Identities=18%  Similarity=0.233  Sum_probs=14.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHH
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFD   53 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~   53 (512)
                      ...+...+...|++++|+.+++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            4456666777777777776664

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.48  E-value=20  Score=28.89  Aligned_cols=93  Identities=8%  Similarity=0.035  Sum_probs=46.2

Q ss_pred             HHHHHHccCChhHHHHHHHhcCCCCCCC--cchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 010342          110 LVDSLCREGYVNEVFRIAEDMPQGKSVN--EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH  187 (512)
Q Consensus       110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  187 (512)
                      +...+...|++++|..-++.........  ...+--.|.+.....|.+|+|+.+++.....+..  ......-.+.+...
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k  172 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence            3445555566666665555443221100  0111112344555566666666666665554321  12233344556666


Q ss_pred             CchhHHHHHHHHHHhCC
Q 010342          188 GGCMRAYQLLEEGIQFG  204 (512)
Q Consensus       188 ~~~~~a~~~~~~~~~~~  204 (512)
                      |+-++|..-|++..+..
T Consensus       173 g~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         173 GDKQEARAAYEKALESD  189 (207)
T ss_pred             CchHHHHHHHHHHHHcc
Confidence            66666666666666553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=84.36  E-value=5.6  Score=34.77  Aligned_cols=92  Identities=10%  Similarity=0.003  Sum_probs=55.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK  436 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  436 (512)
                      -...|.+.|.+++|+..|....... +-|+.++..-..+|.+...+..|+.-...++..+ ..-...|..-+.+-...|.
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence            3556778888888888887766642 3377777777778888888877777666665432 1112233333333333455


Q ss_pred             HHHHHHHHHHHHHC
Q 010342          437 IHEAVHFLYELVDS  450 (512)
Q Consensus       437 ~~~a~~~~~~~~~~  450 (512)
                      ..+|.+-++..++.
T Consensus       181 ~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  181 NMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHhHHHHHhh
Confidence            55555555555543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.31  E-value=2.7  Score=24.19  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=10.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 010342          427 MIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       427 l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      |..+|...|+.+.|.++++++..
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            34444444454555444444443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.27  E-value=8.2  Score=33.03  Aligned_cols=72  Identities=13%  Similarity=0.086  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN  104 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  104 (512)
                      ++.....|..+|.+.+|.++.++....+ +.+...+..++..+...||--.+...++++-+.+...-++..+.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd  353 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD  353 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence            3455566777888888888888777654 44666777778888888887777776666666555554555443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=83.73  E-value=10  Score=29.93  Aligned_cols=28  Identities=11%  Similarity=0.143  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHCCCCCChHHHHHHHHhh
Q 010342          472 KREAYQILREMRKNGLNPDAVTWRILDKLH  501 (512)
Q Consensus       472 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  501 (512)
                      +++|.+.|++..+  ..|+...|+.-+.+.
T Consensus        96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   96 FEKATEYFQKAVD--EDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence            4555566666655  578888887665544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=83.66  E-value=19  Score=29.09  Aligned_cols=87  Identities=16%  Similarity=0.095  Sum_probs=40.1

Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCChH-----hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342          362 FRLRRVEEAKEVFNCMLGIGVVADST-----TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK  436 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  436 (512)
                      ++.|++++|..-|...+..- ++...     .|..-..++.+.+.++.|+.-..+.++.+ +.....+..-..+|.+...
T Consensus       106 F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek  183 (271)
T KOG4234|consen  106 FKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK  183 (271)
T ss_pred             hhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence            44555555555555555431 22111     22222334455555555555555554433 2122222223345555556


Q ss_pred             HHHHHHHHHHHHHC
Q 010342          437 IHEAVHFLYELVDS  450 (512)
Q Consensus       437 ~~~a~~~~~~~~~~  450 (512)
                      +++|++-|+++.+.
T Consensus       184 ~eealeDyKki~E~  197 (271)
T KOG4234|consen  184 YEEALEDYKKILES  197 (271)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666666554

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.64  E-value=28  Score=30.04  Aligned_cols=59  Identities=20%  Similarity=0.137  Sum_probs=40.4

Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010342          177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML  236 (512)
Q Consensus       177 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  236 (512)
                      ++...+.|..+|.+.+|.++.+..+... +.+...+..++..++..||--.+.+-++.+.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3445566777777777777777777654 5566777777777777777666666665553

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=83.52  E-value=23  Score=29.02  Aligned_cols=28  Identities=21%  Similarity=0.173  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +|--|..-+...|+.++|..+|+-.+..
T Consensus       239 tyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         239 TYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            5556666666777777777777666554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=83.16  E-value=6.5  Score=23.78  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=18.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342          461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL  497 (512)
Q Consensus       461 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  497 (512)
                      .+.-++.+.|++++|.+..+.+++  +.|+..-...|
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L   40 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence            344555666666666666666665  45554443333

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.57  E-value=14  Score=30.31  Aligned_cols=77  Identities=22%  Similarity=0.148  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--VTPNIVCYNVVIDG  465 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~  465 (512)
                      |.+.-++.+.+.+.+.+++...+.-++.+ +.|...-..++..++-.|++++|..-++-.-...  ..+...+|..++++
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            44556677788889999999988887764 5566677788899999999999988777665432  23334556666554

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.38  E-value=13  Score=30.40  Aligned_cols=78  Identities=10%  Similarity=0.014  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV  111 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~  111 (512)
                      .+..++.+.+.++..+++...+.-.+.. +.|..+-..+++.++-.|++++|...++-+-+..   ....+....|..++
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~---p~~t~~a~lyr~li   79 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS---PQDTVGASLYRHLI   79 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcC---cccchHHHHHHHHH
Confidence            4556667777888888888877766652 3355666777888888888888877654443221   13344445555555


Q ss_pred             HH
Q 010342          112 DS  113 (512)
Q Consensus       112 ~~  113 (512)
                      ..
T Consensus        80 r~   81 (273)
T COG4455          80 RC   81 (273)
T ss_pred             HH
Confidence            43

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.04  E-value=31  Score=29.34  Aligned_cols=188  Identities=11%  Similarity=0.115  Sum_probs=92.5

Q ss_pred             ccCcHHHHHHHHHHHHhCCCCCChH---hHHHHHHHHHhcCChhHHHHHHHHHHhC---CC--CCChhhHHHHHHHHHhc
Q 010342            6 GLSRVGEAHKLFFDMKSRGHVPNVV---SYTTLIHGYCRTGEMDVAYKVFDEMRHC---GV--LPNSLTYSVLVRGVLRT   77 (512)
Q Consensus         6 ~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~l~~~~~~~   77 (512)
                      +..++++|+..|+...+........   +...++....+.+++++....+.+|...   .+  ..+..+.+.++......
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            3456777777777777653222222   3345566677777777777766666431   11  11223444454444444


Q ss_pred             CChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhh
Q 010342           78 RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG  157 (512)
Q Consensus        78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  157 (512)
                      .+.+-....++.-++.+.+..+-+.-..|-.-|.                                   ..|...+++..
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLg-----------------------------------kl~fd~~e~~k  163 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLG-----------------------------------KLYFDRGEYTK  163 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHh-----------------------------------hhheeHHHHHH
Confidence            4444443333333333332222111111222233                                   44444444444


Q ss_pred             HHHHHHHHHHc------------CCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhC-CCCCchhhHHHHHHHH-----
Q 010342          158 ASRVVYVMRKR------------GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGL-----  219 (512)
Q Consensus       158 a~~~~~~~~~~------------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----  219 (512)
                      ..++++++.++            |.+ =...|..=|..|....+-.+...+|++.... ...|.+.... +|+-|     
T Consensus       164 l~KIlkqLh~SCq~edGedD~kKGtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMH  241 (440)
T KOG1464|consen  164 LQKILKQLHQSCQTEDGEDDQKKGTQ-LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMH  241 (440)
T ss_pred             HHHHHHHHHHHhccccCchhhhccch-hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccc
Confidence            44444444321            111 2345666677777777777777777776543 2234444433 34433     


Q ss_pred             hccCCHHHHHH
Q 010342          220 CGESDLEKARK  230 (512)
Q Consensus       220 ~~~g~~~~a~~  230 (512)
                      .+.|.+++|..
T Consensus       242 lreg~fe~AhT  252 (440)
T KOG1464|consen  242 LREGEFEKAHT  252 (440)
T ss_pred             cccchHHHHHh
Confidence            45677777653

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.68  E-value=68  Score=33.08  Aligned_cols=56  Identities=14%  Similarity=0.051  Sum_probs=31.7

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChH-hHHHHHH---HHHhcCChhHHHHHHHHHHhC
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVV-SYTTLIH---GYCRTGEMDVAYKVFDEMRHC   58 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~---~~~~~~~~~~a~~~~~~m~~~   58 (512)
                      .+....++++|..+-+.....++.-... .+.....   -+..++++++|.+.|+++...
T Consensus       316 ~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d  375 (877)
T KOG2063|consen  316 DLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID  375 (877)
T ss_pred             HHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence            3455566777776666544421111111 1122222   245688999999999998763

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=81.61  E-value=7.7  Score=22.85  Aligned_cols=34  Identities=12%  Similarity=0.162  Sum_probs=22.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 010342          466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDK  499 (512)
Q Consensus       466 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  499 (512)
                      ..+.|-..++..++++|.+.|+..+...+..+++
T Consensus        12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~   45 (48)
T PF11848_consen   12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR   45 (48)
T ss_pred             HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence            3445666677777777777777777766666654

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.28  E-value=4.3  Score=23.35  Aligned_cols=26  Identities=15%  Similarity=0.193  Sum_probs=23.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          461 VVIDGACKLSMKREAYQILREMRKNG  486 (512)
Q Consensus       461 ~l~~~~~~~g~~~~a~~~~~~m~~~~  486 (512)
                      .+..+|...|+.+.|.+++++....|
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            47889999999999999999999755

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=81.14  E-value=29  Score=28.50  Aligned_cols=179  Identities=15%  Similarity=0.040  Sum_probs=91.6

Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHH
Q 010342          292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEA  370 (512)
Q Consensus       292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a  370 (512)
                      .|-+.-|.--|.+.....  +.-+..||-+.-.+...|+++.|.+.|+..++-.   |+ ..+...-.-++.--|++.-|
T Consensus        78 lGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y~Ya~lNRgi~~YY~gR~~LA  152 (297)
T COG4785          78 LGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRYKLA  152 (297)
T ss_pred             hhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC---CcchHHHhccceeeeecCchHhh
Confidence            344555555555555443  4455667777777778888888888887755322   21 11111111122345677777


Q ss_pred             HHHHHHHHhCCCCCChH--hHHHHHHHHHhcCCHHHHHHH-HHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          371 KEVFNCMLGIGVVADST--TYAIVIDGLCESNQLDEAKRF-WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL  447 (512)
Q Consensus       371 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  447 (512)
                      .+-+...-..+ +.|+.  .|-.+.   ...-++.+|..- .++..    ..|..-|...+-.+. .|++. ...+++++
T Consensus       153 q~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~  222 (297)
T COG4785         153 QDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFY-LGKIS-EETLMERL  222 (297)
T ss_pred             HHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHH-Hhhcc-HHHHHHHH
Confidence            66665555433 22222  222222   122344454433 33332    234344544433332 12221 11223333


Q ss_pred             HHCCCCC-------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          448 VDSGVTP-------NIVCYNVVIDGACKLSMKREAYQILREMRKNG  486 (512)
Q Consensus       448 ~~~~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  486 (512)
                      ... -..       -..||-.|..-+...|+.++|..+|+-...++
T Consensus       223 ~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         223 KAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             Hhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            221 111       12467778888899999999999999887654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=80.63  E-value=50  Score=30.92  Aligned_cols=108  Identities=13%  Similarity=0.002  Sum_probs=62.5

Q ss_pred             HHhhcCCHHHHHHHHHhhc--ccCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHHh-------CCCCCCh---
Q 010342          324 GLLNVGRIQEALNLLYQVM--PQRGYSPG-----IVTYNAVLRGLFRLRRVEEAKEVFNCMLG-------IGVVADS---  386 (512)
Q Consensus       324 ~~~~~~~~~~a~~~~~~~~--~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~---  386 (512)
                      .+.-.|++.+|.+++...-  ...|...+     -..+|.+.-.+.+.|.+..+..+|....+       .|++|..   
T Consensus       249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t  328 (696)
T KOG2471|consen  249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT  328 (696)
T ss_pred             HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence            3455788888888775421  11111111     11234454455566666666666665553       3544422   


Q ss_pred             --------HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 010342          387 --------TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR  433 (512)
Q Consensus       387 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  433 (512)
                              .+||. .-.|...|++-.|.+.|.+.+.. +..++..|-.|..+|..
T Consensus       329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM  381 (696)
T ss_pred             hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence                    22332 33567788888888888887643 35567788888888764

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=80.59  E-value=48  Score=30.68  Aligned_cols=132  Identities=13%  Similarity=0.072  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010342          316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG  395 (512)
Q Consensus       316 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  395 (512)
                      ..|...+....+....+.|..+|.+.-+..-+.+++..+++++..++ .|+...|..+|+--... .+.+..--+-.+.-
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f  475 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF  475 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence            34566677777777888888888885433336778888888888664 57788888888766553 22333333455566


Q ss_pred             HHhcCCHHHHHHHHHHhhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          396 LCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       396 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +...++-+.|..+|+..+.. +..+  ...|..++.--..-|+...+..+=+.|.+.
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            67788888888888865432 1222  347888888777788887777776666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	512
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-15
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-11
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 76.8 bits (187), Expect = 7e-15
 Identities = 24/218 (11%), Positives = 52/218 (23%), Gaps = 35/218 (16%)

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
              Q Q       L           ++  A  +L                          
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG--------------------- 155

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
                          Q+     +  YNAV+ G  R    +E   V   +   G+  D  +
Sbjct: 156 -------------QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202

Query: 389 YAIVIDGLCESNQLDEA-KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           YA  +  +   +Q     +R  + +            A ++    R+  +          
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
                 P  V  + ++        +    ++   ++  
Sbjct: 263 SLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 73.3 bits (178), Expect = 9e-14
 Identities = 24/218 (11%), Positives = 67/218 (30%), Gaps = 4/218 (1%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P E     L++   G+  L+  +         +   + +    + +   L        ++
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 267 LVF---MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           LV      Q +    +   N V+ G+ + G  +E + VL  +       PD +++   + 
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAALQ 208

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
            +    +    +    + M Q G     +    +L    R   ++   +V         +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                 + ++  +   +      +    +     + + 
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 71.4 bits (173), Expect = 3e-13
 Identities = 37/297 (12%), Positives = 86/297 (28%), Gaps = 12/297 (4%)

Query: 1   MDQLCGLSRVGEAHKL---FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
                   ++  AH L       + +  +  +  Y  ++ G+ R G       V   ++ 
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193

Query: 58  CGVLPNSLTYSVLVRGVLR----TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 113
            G+ P+ L+Y+  ++ + R       +ER    M +   +++      + +      V  
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253

Query: 114 LCREGYVNEVFRIAEDMPQGKS-VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP 172
              +             P   S +  +        S  +        + ++  +      
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELA 313

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           S V   S+            A + L+              +     L  E ++ + R  L
Sbjct: 314 SRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRL--EREVYEGRFSL 371

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
              L    +D   +  + L+ L  +    E    L   L  +     +     ++G 
Sbjct: 372 YPFLC--LLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQ 426

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 66.4 bits (160), Expect = 1e-11
 Identities = 28/255 (10%), Positives = 68/255 (26%), Gaps = 6/255 (2%)

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           R+   +       E  A    +    R      A  +    R+   +P       ++   
Sbjct: 43  RLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEA 102

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF---MLSKKDV 241
                         +  Q      +       +       L  A  +L        K+ +
Sbjct: 103 PGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL 162

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL-K 300
               + N  +          EL+ VL  +      PD+++    +    +  +    + +
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L  M            FT ++    +   + +A++ +          P  V  + +LR 
Sbjct: 223 CLEQMSQEGLKLQAL--FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280

Query: 361 LFRLRRVEEAKEVFN 375
           ++         ++  
Sbjct: 281 VYAKDGRVSYPKLHL 295

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 56.7 bits (135), Expect = 1e-08
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFL---YELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
                 A  K    + ++  A H L   +          +  YN V+ G  +    +E  
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
            +L  ++  GL PD +++    +  G +  D G
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 71/407 (17%), Positives = 135/407 (33%), Gaps = 123/407 (30%)

Query: 209 EHTYK----VLVEGLCGESDLEKARKVLQFMLSKKDVD-----RTRICNIYLRALCLIKN 259
           ++ YK    V  +      D +  + + + +LSK+++D     +  +         L+  
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 260 PTELLNVLV---------FM---LQTQC-QPDVIT------LNTVING---FCKMG--RI 295
             E++   V         F+   ++T+  QP ++T       + + N    F K    R+
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 296 E------EALK--------VLNDMV-AGKFC-APDAVTFTTII----FGL--LNVGRIQE 333
           +      +AL         +++ ++ +GK   A D      +     F +  LN+     
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 334 A-------LNLLYQVMPQ-----RGYSPGIVTYNAV---LRGLFR----------LRRVE 368
                     LLYQ+ P         S   +  +++   LR L +          L  V+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 369 EAK--EVFN--C-MLGIGV------VADS----TTYAIVIDGLCESNQLDEAKRFWDDIV 413
            AK    FN  C +L   +      V D     TT  I +D    +   DE K      +
Sbjct: 255 NAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 414 W------PSNIHD-NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
                  P  +   N    ++I    R G      ++ +   D   T      NV+    
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVL---- 366

Query: 467 CKLSMKREAYQILREMRKNGLNPDAV---TW---------RILDKLH 501
            + +  R+ +  L     +   P  +    W          +++KLH
Sbjct: 367 -EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 76/530 (14%), Positives = 152/530 (28%), Gaps = 154/530 (29%)

Query: 42  TGEMDVAYK----VFDEM----RHCGVLPNSLTYSVLVRGVLRTRDVE-------RANVL 86
           TGE    YK    VF++       C  + +        + +L   +++         +  
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------KSILSKEEIDHIIMSKDAVSGT 64

Query: 87  MFKLWE-RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           +   W    K+EE            V+ + R  Y   +  I  +  Q   +   +     
Sbjct: 65  LRLFWTLLSKQEE-------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR- 116

Query: 146 IDSLCRSGR---NHGASRVVYVMR-KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
            D L    +    +  SR+   ++ ++ L     + N ++ G+    G          G 
Sbjct: 117 -DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV---LGS---------G- 162

Query: 202 QFGYLPSEHTYK-VLVEGLCGESDLEKAR--KVLQFMLSKKDVDRTRICNIYLRALC--L 256
                      K  +   +C    ++     K+  F L+ K+ +        L+ L   +
Sbjct: 163 -----------KTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 257 IKNPTELLNVLVFMLQTQCQPDVI-TLNTVINGFCKMGRIEEALKVLNDM----VAGKF- 310
             N T   +       +      I ++   +    K    E  L VL ++        F 
Sbjct: 210 DPNWTSRSD------HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 311 --CAPDAVTFTT----IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF-- 362
             C    +  TT    +   L        +L            +P        ++ L   
Sbjct: 264 LSC---KILLTTRFKQVTDFLSAATTTHISL-----DHHSMTLTP------DEVKSLLLK 309

Query: 363 -------RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-----------------E 398
                   L R  E          + ++A       + DGL                  E
Sbjct: 310 YLDCRPQDLPR--EVLTTN--PRRLSIIA-----ESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 399 S--NQLDEA---KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV- 452
           S  N L+ A   K F    V+P + H   +   ++  +       + +  + +L    + 
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 453 -----TPNIVCYNVVIDGACKLSMKR-------EAYQILREMRKNGLNPD 490
                   I   ++ ++   KL  +        + Y I +    + L P 
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 64/516 (12%), Positives = 149/516 (28%), Gaps = 142/516 (27%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           +SR+    KL   +       NV+     I G                +   G       
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVL-----IDG----------------VLGSG------- 162

Query: 67  YSVLVRGVLRTRDVERANVLMFKL-WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
            + +   V  +  V+      FK+ W  +K              L   L  +  ++  + 
Sbjct: 163 KTWVALDVCLSYKVQCKMD--FKIFWLNLKNCNS---PETVLEMLQK-LLYQ--IDPNWT 214

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL-----VSYNSI 180
              D      +                      + +  +++ +     L     V     
Sbjct: 215 SRSDHSSNIKLRIHSI----------------QAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 181 VHGLCKHGGCMRAYQLL----EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            +    +  C    ++L     + +   +L +  T  + ++        ++ + +L   L
Sbjct: 259 WNAF--NLSC----KILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 237 SKKDVD-RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             +  D    +     R L +I    E +   +         +   L T+I     +   
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIA---ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLL--NVGR--IQEALNLLYQV-MPQRGYSPG 350
            E  K+ + +    F  P +    TI+  L+  +V +  +   +N L++  + ++     
Sbjct: 369 AEYRKMFDRLSV--F--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 351 IVTYNAVLRGLFRLRR-VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            ++  ++      L+  +E    +   ++          Y I                  
Sbjct: 425 TISIPSI---YLELKVKLENEYALHRSIV--------DHYNI------------PKTFDS 461

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           DD++ P    D Y Y+                H  + L +             I+   ++
Sbjct: 462 DDLIPPYL--DQYFYS----------------HIGHHLKN-------------IEHPERM 490

Query: 470 SMKREAYQILR----EMRKNGLNPDAVTWRILDKLH 501
           ++ R  +   R    ++R +    +A    IL+ L 
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQ 525

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	512
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.85
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.82
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.75
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.73
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.72
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.68
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.67
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.67
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.67
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.66
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.61
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.6
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.59
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.59
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.58
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.54
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.52
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.52
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.51
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.44
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.4
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.38
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.37
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.36
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.34
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.33
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.31
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.27
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.23
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.23
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.22
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.2
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.2
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.19
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.19
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.14
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.13
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.1
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.05
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.03
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.03
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.02
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.01
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.0
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.99
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.99
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.98
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.98
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.96
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.94
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.87
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.87
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.86
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.86
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.85
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.8
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.76
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.74
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.73
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.71
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.71
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.71
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.65
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.65
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.64
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.63
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.56
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.55
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.54
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.54
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.52
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.51
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.48
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.47
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.47
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.45
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.44
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.41
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.37
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.35
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.33
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.29
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.27
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.25
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.25
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.18
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.14
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.13
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.05
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.01
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.96
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.89
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.82
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.81
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.8
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.8
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.76
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.71
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.68
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.68
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.67
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.64
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.54
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.45
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.42
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.3
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.07
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.9
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.86
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.74
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.74
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.65
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.65
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.57
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.55
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.54
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.52
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.51
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.49
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.32
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.27
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.25
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.23
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.17
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.1
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.86
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.85
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.67
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.35
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.14
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.07
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.75
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.31
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.31
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.6
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.41
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.13
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.99
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.17
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.84
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	90.64
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.37
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.27
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.15
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.49
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.42
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.03
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	88.66
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	87.31
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.05
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	86.97
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	86.39
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	85.5
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.2
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.67
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.04

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-41  Score=332.29  Aligned_cols=471  Identities=10%  Similarity=-0.036  Sum_probs=395.4

Q ss_pred             cCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 010342            7 LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL   86 (512)
Q Consensus         7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   86 (512)
                      .|....+...+..+.    .++...|+.++..|.+.|++++|+.+|++|...  .|+..++..++.+|...|++++|...
T Consensus        66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~  139 (597)
T 2xpi_A           66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL  139 (597)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence            344445555554433    357889999999999999999999999999864  58889999999999999999999887


Q ss_pred             HHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCC---------------CCCCcchhHHHHHHHHHh
Q 010342           87 MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG---------------KSVNEEFACGHMIDSLCR  151 (512)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~  151 (512)
                      +.++..       ..++..+++.++..|.+.|++++|.++|+++...               +.+++..+|+.++.+|.+
T Consensus       140 ~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  212 (597)
T 2xpi_A          140 LTKEDL-------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN  212 (597)
T ss_dssp             HHHTCG-------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhc-------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence            765531       2466789999999999999999999999964332               223467899999999999


Q ss_pred             cCChhhHHHHHHHHHHcCCCCCcchHHH--------------------------------------HHHHHhccCchhHH
Q 010342          152 SGRNHGASRVVYVMRKRGLTPSLVSYNS--------------------------------------IVHGLCKHGGCMRA  193 (512)
Q Consensus       152 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~--------------------------------------l~~~~~~~~~~~~a  193 (512)
                      .|++++|.+.|+++.+.++. +...+..                                      ++..|.+.|++++|
T Consensus       213 ~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  291 (597)
T 2xpi_A          213 LSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA  291 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence            99999999999999987432 3333332                                      35567788999999


Q ss_pred             HHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc
Q 010342          194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  273 (512)
                      .++|+++.+.  +++..++..++..+.+.|++++|.++|+++...+ +.+..++..++.++...|++++|..+++.+.+.
T Consensus       292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  368 (597)
T 2xpi_A          292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR  368 (597)
T ss_dssp             HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence            9999998865  5889999999999999999999999999998653 457788999999999999999999999999876


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhh
Q 010342          274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT  353 (512)
Q Consensus       274 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  353 (512)
                      . +.+..+++.++..|.+.|++++|.++|+++.+..  +.+..+|..++.++.+.|++++|+++|++++...  +.+..+
T Consensus       369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~  443 (597)
T 2xpi_A          369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLP  443 (597)
T ss_dssp             C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHH
T ss_pred             C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHH
Confidence            5 4478899999999999999999999999998754  5678899999999999999999999999976443  557889


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC----CCCCC--HHhHHHH
Q 010342          354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNIHD--NYVYAAM  427 (512)
Q Consensus       354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l  427 (512)
                      |..++.+|.+.|++++|..+|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.    +..|+  ..+|..+
T Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            9999999999999999999999999864 567889999999999999999999999999765    55676  7899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhcc
Q 010342          428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILDKLHGN  503 (512)
Q Consensus       428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~  503 (512)
                      +.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.  .| +...+..|..+|..
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC-
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHhc
Confidence            999999999999999999999875 447899999999999999999999999999984  45 45677777777753

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.4e-40  Score=319.50  Aligned_cols=446  Identities=10%  Similarity=-0.031  Sum_probs=384.5

Q ss_pred             ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010342            2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE   81 (512)
Q Consensus         2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~   81 (512)
                      ..|.+.|++++|+.+|+++...  .|+..++..++.+|.+.|++++|..+|+++...  +++..+++.++.+|.+.|+++
T Consensus        92 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~  167 (597)
T 2xpi_A           92 HDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ  167 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH
Confidence            3577899999999999999965  668889999999999999999999999998653  678999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhc-------------CCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHH-----
Q 010342           82 RANVLMFKLWERMKEE-------------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG-----  143 (512)
Q Consensus        82 ~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----  143 (512)
                      +|..++.+.   ++..             .+...+..+++.++..|.+.|++++|.++|+++.+.++. +...+.     
T Consensus       168 ~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~  243 (597)
T 2xpi_A          168 GALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSN  243 (597)
T ss_dssp             HHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred             HHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHh
Confidence            998876531   1211             123456789999999999999999999999999876532 222222     


Q ss_pred             ---------------------------------HHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCch
Q 010342          144 ---------------------------------HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC  190 (512)
Q Consensus       144 ---------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~  190 (512)
                                                       .++..|.+.|++++|.++|+.+.+.  .++..+|+.++..+.+.|++
T Consensus       244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~  321 (597)
T 2xpi_A          244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRF  321 (597)
T ss_dssp             TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCH
T ss_pred             hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCH
Confidence                                             2245566789999999999998876  47899999999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHH
Q 010342          191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM  270 (512)
Q Consensus       191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  270 (512)
                      ++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++.+... .+.+...+..++..|.+.|++++|..+|+.+
T Consensus       322 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  399 (597)
T 2xpi_A          322 IDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKS  399 (597)
T ss_dssp             HHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999999865 457889999999999999999999999999853 4566778999999999999999999999999


Q ss_pred             HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC
Q 010342          271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG  350 (512)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  350 (512)
                      .+..+ .+..+|+.++.+|.+.|++++|+++|+++.+..  +.+..++..++.+|.+.|++++|.+.|.+++...  +.+
T Consensus       400 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~  474 (597)
T 2xpi_A          400 STMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYD  474 (597)
T ss_dssp             HHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCC
T ss_pred             HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence            88653 368899999999999999999999999999876  6788999999999999999999999999977544  457


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhH
Q 010342          351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY  424 (512)
Q Consensus       351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  424 (512)
                      ..+|+.++..|.+.|++++|..+|+++.+.    +..|+  ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~  553 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVH  553 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHH
Confidence            889999999999999999999999999875    66777  6799999999999999999999999998765 6688999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      ..++.+|.+.|++++|.+.|+++.+.. +.+...+..+...|
T Consensus       554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          554 TAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            999999999999999999999999874 22566666665554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2.7e-29  Score=230.97  Aligned_cols=382  Identities=12%  Similarity=0.054  Sum_probs=297.9

Q ss_pred             HHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc
Q 010342          110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG  189 (512)
Q Consensus       110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~  189 (512)
                      +...+.+.|++++|.+.++.+....+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            34455666777777777766655432 233455556667777778888877777776653 2356677778888888888


Q ss_pred             hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHH
Q 010342          190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF  269 (512)
Q Consensus       190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  269 (512)
                      +++|.+.|+++.+.. +.+..+|..+..++...|++++|.+.|+++... .+.....+..+...+...|++++|...++.
T Consensus        83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-NPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            888888888777643 334556777778888888888888888777753 333455666777777778888888888888


Q ss_pred             HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCC
Q 010342          270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP  349 (512)
Q Consensus       270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  349 (512)
                      +.+..+. +..+|..+...+.+.|++++|...|+++....  +.+...+..+...+...|++++|...+.+.+...  +.
T Consensus       161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~  235 (388)
T 1w3b_A          161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PN  235 (388)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TT
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cC
Confidence            7776433 57788889999999999999999999998765  5677888899999999999999999998876543  34


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK  429 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  429 (512)
                      +..++..+...+...|++++|...|+++.+.. +.+..++..+..++.+.|++++|...++++.+.. +.+..++..+..
T Consensus       236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  313 (388)
T 1w3b_A          236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN  313 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence            57788889999999999999999999998864 4567789999999999999999999999998764 677889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhccCC
Q 010342          430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRG  505 (512)
Q Consensus       430 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g  505 (512)
                      .+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++.+  +.|+ ...|..+..++...|
T Consensus       314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence            9999999999999999998764 33677899999999999999999999999987  4554 567777777776655

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2.1e-28  Score=225.11  Aligned_cols=377  Identities=12%  Similarity=0.008  Sum_probs=182.3

Q ss_pred             cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN   84 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   84 (512)
                      .+.|++++|++.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+..++...|++++|.
T Consensus        10 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~   87 (388)
T 1w3b_A           10 YQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence            3445555555555555544211 33344444445555555555555555544432 234444555555555555555554


Q ss_pred             HHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHH
Q 010342           85 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV  164 (512)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  164 (512)
                      ..+.++++                                        ..+ .+..+|..+..++.+.|++++|.+.|+.
T Consensus        88 ~~~~~al~----------------------------------------~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  126 (388)
T 1w3b_A           88 EHYRHALR----------------------------------------LKP-DFIDGYINLAAALVAAGDMEGAVQAYVS  126 (388)
T ss_dssp             HHHHHHHH----------------------------------------HCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred             HHHHHHHH----------------------------------------cCc-chHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44444432                                        221 2233455556666666666666666666


Q ss_pred             HHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 010342          165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT  244 (512)
Q Consensus       165 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  244 (512)
                      +.+..+. +...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.... +.  
T Consensus       127 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~--  201 (388)
T 1w3b_A          127 ALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN--  201 (388)
T ss_dssp             HHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT--
T ss_pred             HHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC--
Confidence            6554221 33445555666666666666666666666542 3345566666666666666666666666665421 12  


Q ss_pred             ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 010342          245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG  324 (512)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  324 (512)
                                                       +...+..+...+...|++++|...+++.....  +.+..++..+...
T Consensus       202 ---------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~  246 (388)
T 1w3b_A          202 ---------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACV  246 (388)
T ss_dssp             ---------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             ---------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHH
Confidence                                             22333333444444444444444444443322  2233444444444


Q ss_pred             HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  404 (512)
                      +...|++++|...|.+++...  +.++.++..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus       247 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  323 (388)
T 1w3b_A          247 YYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHH
Confidence            444444444444444433221  1223344444444444555555555555444432 3344445555555555555555


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL  469 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  469 (512)
                      |...++++.+.. +.+..++..++.++.+.|++++|.+.|+++.+.. +.+...|..+...+...
T Consensus       324 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~  386 (388)
T 1w3b_A          324 AVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence            555555554432 3334455555555555555555555555555432 11334444444444443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.9e-31  Score=247.09  Aligned_cols=204  Identities=14%  Similarity=0.136  Sum_probs=147.5

Q ss_pred             HHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCC---------HHH
Q 010342          299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR---------VEE  369 (512)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~  369 (512)
                      ..+.+.+.+.+........++.+|.+|++.|++++|+++|++ |...|+.||..+|+.||.+|++.+.         ++.
T Consensus        10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~-M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A           10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDE-ARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHH-HHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            334444444333222233456666666677777777766666 3456667777777777766665443         577


Q ss_pred             HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      |.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc
Q 010342          450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN  503 (512)
Q Consensus       450 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  503 (512)
                      .|+.||..+|++|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            888888888888888888888888888888888888888888888888777664

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=6.9e-30  Score=237.82  Aligned_cols=202  Identities=14%  Similarity=0.132  Sum_probs=160.6

Q ss_pred             HHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC---------HHHHH
Q 010342          266 VLVFMLQTQCQPDV-ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR---------IQEAL  335 (512)
Q Consensus       266 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~  335 (512)
                      +.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.+. .||..+|+.++.+|.+.+.         .+.|.
T Consensus        12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~   90 (501)
T 4g26_A           12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF   90 (501)
T ss_dssp             ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence            33444444443332 3466777777777777777777777777664 7777777777777765543         67888


Q ss_pred             HHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342          336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP  415 (512)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  415 (512)
                      ++|.+ |...|+.||..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus        91 ~lf~~-M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A           91 DIFKQ-MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHHH-HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHH-HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            88887 45788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 010342          416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL  469 (512)
Q Consensus       416 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  469 (512)
                      |+.||..+|++|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus       170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999988888753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-25  Score=214.64  Aligned_cols=431  Identities=8%  Similarity=-0.039  Sum_probs=236.1

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER   82 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~   82 (512)
                      .+.+.|++++|+..|+++.+.+  |+..+|..+..++.+.|++++|+..|+++.+.+ +.+..+|..+..++...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~   91 (514)
T 2gw1_A           15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD   91 (514)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence            3456677777777777777663  566677777777777777777777777776643 2345566677777777777777


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHH
Q 010342           83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV  162 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  162 (512)
                      |...+.+++...+      ++......++..+........+.+.+..+......|+......................+.
T Consensus        92 A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
T 2gw1_A           92 AMFDLSVLSLNGD------FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA  165 (514)
T ss_dssp             HHHHHHHHHHSSS------CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred             HHHHHHHHHhcCC------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence            7776666554321      1222222333333332222222222222211111111111100000011111111111111


Q ss_pred             HHHHHcCCC--------C-CcchHHHHHHHHhc---cCchhHHHHHHHHHHh-----CCC--------CCchhhHHHHHH
Q 010342          163 YVMRKRGLT--------P-SLVSYNSIVHGLCK---HGGCMRAYQLLEEGIQ-----FGY--------LPSEHTYKVLVE  217 (512)
Q Consensus       163 ~~~~~~g~~--------p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~  217 (512)
                      ..+......        | +...+......+..   .|++++|...++++.+     ...        +.+..++..+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (514)
T 2gw1_A          166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI  245 (514)
T ss_dssp             HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence            111111111        1 12333333333333   6777777777777766     211        123445666667


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 010342          218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE  297 (512)
Q Consensus       218 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  297 (512)
                      .+...|++++|...++.+......  ...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++
T Consensus       246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~  322 (514)
T 2gw1_A          246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQ  322 (514)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHH
Confidence            777777777777777776654322  556666666677777777777777766655432 45566666667777777777


Q ss_pred             HHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 010342          298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM  377 (512)
Q Consensus       298 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  377 (512)
                      |...+++.....  +.+...+..+...+...|++++|...+.+.+...  +.+...+..+...+...|++++|...++++
T Consensus       323 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          323 AGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             HHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            777777766654  3455566666666777777777777776655433  334456666666667777777777777666


Q ss_pred             HhCCC-CCC----hHhHHHHHHHHHh---cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          378 LGIGV-VAD----STTYAIVIDGLCE---SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       378 ~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      .+... .++    ...+..+..++..   .|++++|...++++.... +.+..++..+..++...|++++|...|++..+
T Consensus       399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD  477 (514)
T ss_dssp             HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            55321 111    2256666666666   677777777777666543 44555666666677777777777777776666


Q ss_pred             C
Q 010342          450 S  450 (512)
Q Consensus       450 ~  450 (512)
                      .
T Consensus       478 ~  478 (514)
T 2gw1_A          478 L  478 (514)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.4e-25  Score=211.97  Aligned_cols=446  Identities=10%  Similarity=-0.038  Sum_probs=329.3

Q ss_pred             ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010342           28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF  107 (512)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (512)
                      ....+......+.+.|++++|+..|+++.+.+  |+..+|..+..++...|++++|...+.++++..|      .+..++
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~   76 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP------DYSKVL   76 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS------CCHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh------HHHHHH
Confidence            35578888999999999999999999999874  7999999999999999999999999988886532      245688


Q ss_pred             HHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 010342          108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH  187 (512)
Q Consensus       108 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  187 (512)
                      ..+..++...|++++|...|+++...++ ++......++..+........+.+.+..+...+..|+...+..-.......
T Consensus        77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  155 (514)
T 2gw1_A           77 LRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ  155 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence            8899999999999999999999877664 334444445554444433333333333332222222221111111001111


Q ss_pred             CchhHHHHHHHHHHhCCC---------CCchhhHHHHHHHHhc---cCCHHHHHHHHHHHHh-----CCCC--------C
Q 010342          188 GGCMRAYQLLEEGIQFGY---------LPSEHTYKVLVEGLCG---ESDLEKARKVLQFMLS-----KKDV--------D  242 (512)
Q Consensus       188 ~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~~--------~  242 (512)
                      ........+...+.....         +.+...+......+..   .|+++.|..+++++..     ....        .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (514)
T 2gw1_A          156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK  235 (514)
T ss_dssp             -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred             cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence            111111111111111111         1224445445554444   8999999999999987     3112        2


Q ss_pred             CcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Q 010342          243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII  322 (512)
Q Consensus       243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  322 (512)
                      ....+..+...+...|++++|...++.+.+..+.  ...+..+..++...|++++|...++++....  +.+...+..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~  311 (514)
T 2gw1_A          236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRG  311 (514)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHH
Confidence            2456778888999999999999999999988654  8888999999999999999999999999875  56778899999


Q ss_pred             HHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 010342          323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL  402 (512)
Q Consensus       323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  402 (512)
                      ..+...|++++|...+.+.+...  +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus       312 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  388 (514)
T 2gw1_A          312 QMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDF  388 (514)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCH
Confidence            99999999999999999976543  4456788889999999999999999999998864 55678899999999999999


Q ss_pred             HHHHHHHHHhhcCCCC-CC----HHhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 010342          403 DEAKRFWDDIVWPSNI-HD----NYVYAAMIKGLCR---SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE  474 (512)
Q Consensus       403 ~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  474 (512)
                      ++|...++++.+.... ++    ...+..+...+..   .|++++|...++++.+.. +.+..++..+...+.+.|++++
T Consensus       389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~  467 (514)
T 2gw1_A          389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDE  467 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHH
Confidence            9999999998753211 11    3488999999999   999999999999998865 3367788999999999999999


Q ss_pred             HHHHHHHHHHCCCCCChH
Q 010342          475 AYQILREMRKNGLNPDAV  492 (512)
Q Consensus       475 a~~~~~~m~~~~~~p~~~  492 (512)
                      |.+.++++.+  +.|+..
T Consensus       468 A~~~~~~a~~--~~~~~~  483 (514)
T 2gw1_A          468 AITLFEESAD--LARTME  483 (514)
T ss_dssp             HHHHHHHHHH--HCSSHH
T ss_pred             HHHHHHHHHH--hccccH
Confidence            9999999998  456543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=7.9e-24  Score=203.60  Aligned_cols=433  Identities=11%  Similarity=0.027  Sum_probs=219.0

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010342           29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA  108 (512)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (512)
                      ...+..+...+.+.|++++|+..|+++.+.. +.++.+|..+..++...|++++|...+.++++..|.      +..++.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~   97 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD------HSKALL   97 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------hHHHHH
Confidence            4567777788888888888888888887753 346677777888888888888888887777664322      356677


Q ss_pred             HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCCcchHHHHHHHHhc
Q 010342          109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL--TPSLVSYNSIVHGLCK  186 (512)
Q Consensus       109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~  186 (512)
                      .+...+...|++++|...|+.+..... +.    ...+..+...+....|...++.+....+  .+........+..+..
T Consensus        98 ~la~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  172 (537)
T 3fp2_A           98 RRASANESLGNFTDAMFDLSVLSLNGD-FD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG  172 (537)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhcCCC-CC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence            778888888888888888864432211 11    1123344445555667777777654310  0011111112222222


Q ss_pred             cCchhHHHHHHHHHHhCCCCCc-hhhHHHHHHHHhc--------cCCHHHHHHHHHHHHhCCCCCCcc-------cHHHH
Q 010342          187 HGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCG--------ESDLEKARKVLQFMLSKKDVDRTR-------ICNIY  250 (512)
Q Consensus       187 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l  250 (512)
                      ..+.+.+...+......  .+. ......+...+..        .|++++|..+++.+.+.. +.+..       .+..+
T Consensus       173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~  249 (537)
T 3fp2_A          173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYT  249 (537)
T ss_dssp             TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred             hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHH
Confidence            33333332222211110  111 0111122211111        124555555555554321 11111       23334


Q ss_pred             HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342          251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR  330 (512)
Q Consensus       251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (512)
                      ...+...|++++|...+....+..  |+...+..+...+...|++++|...++++....  +.+..++..+...+...|+
T Consensus       250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~  325 (537)
T 3fp2_A          250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQD  325 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCC
Confidence            444555555555555555555543  224455555555555555555555555555443  3445555555555555555


Q ss_pred             HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD  410 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  410 (512)
                      +++|...+.+.+...  +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus       326 ~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  402 (537)
T 3fp2_A          326 YKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD  402 (537)
T ss_dssp             HHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            555555555544332  2233445555555555566666666555555542 3344455555555555566666555555


Q ss_pred             HhhcCC-----CCCCHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010342          411 DIVWPS-----NIHDNYVYAAMIKGLCRS----------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA  475 (512)
Q Consensus       411 ~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a  475 (512)
                      ++.+..     .......+..+...+...          |++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus       403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A  481 (537)
T 3fp2_A          403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA  481 (537)
T ss_dssp             HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence            554321     001111233333444444          55556666665555543 22444555555555556666666


Q ss_pred             HHHHHHHHH
Q 010342          476 YQILREMRK  484 (512)
Q Consensus       476 ~~~~~~m~~  484 (512)
                      .+.++++.+
T Consensus       482 ~~~~~~al~  490 (537)
T 3fp2_A          482 IELFEDSAI  490 (537)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            665555554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=2e-23  Score=196.11  Aligned_cols=302  Identities=13%  Similarity=0.073  Sum_probs=150.4

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 010342          105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL  184 (512)
Q Consensus       105 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  184 (512)
                      ..+..++..+.+.|++++|..+|+++....+ .+..++..+..++...|++++|...|+.+.+.+.. +..++..+..++
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~  104 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence            3444555555555666666666555544322 34455566666666666666666666666655322 445666666666


Q ss_pred             hccCchhHHHHHHHHHHhCCCCCch---hhHHHH------------HHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 010342          185 CKHGGCMRAYQLLEEGIQFGYLPSE---HTYKVL------------VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI  249 (512)
Q Consensus       185 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  249 (512)
                      ...|++++|.+.|+++.+.. +.+.   ..+..+            ...+...|++++|...++.+... .+.+...+..
T Consensus       105 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~  182 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELREL  182 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHH
Confidence            66666666666666666542 2222   333333            23355566666666666665542 2233444555


Q ss_pred             HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH--------
Q 010342          250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI--------  321 (512)
Q Consensus       250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------  321 (512)
                      +...+...|++++|...+..+.+... .+..++..+..++...|++++|+..|+++....  +.+...+..+        
T Consensus       183 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~  259 (450)
T 2y4t_A          183 RAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNK  259 (450)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHH
Confidence            55555555555555555555554432 245555556666666666666666666555433  2233333322        


Q ss_pred             ----HHHHhhcCCHHHHHHHHHhhcccCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010342          322 ----IFGLLNVGRIQEALNLLYQVMPQRGYSPG--IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG  395 (512)
Q Consensus       322 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  395 (512)
                          ...+...|++++|...|.+++......|.  ...+..+...+.+.|++++|...++++.+.. +.+...+..+..+
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~  338 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEA  338 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence                34444444444444444443322111000  1233444444444444444444444444321 2233444444444


Q ss_pred             HHhcCCHHHHHHHHHHhhc
Q 010342          396 LCESNQLDEAKRFWDDIVW  414 (512)
Q Consensus       396 ~~~~g~~~~a~~~~~~~~~  414 (512)
                      |...|++++|...++++.+
T Consensus       339 ~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          339 YLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHH
Confidence            4444444444444444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=3.2e-23  Score=199.38  Aligned_cols=426  Identities=8%  Similarity=-0.016  Sum_probs=316.2

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER   82 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~   82 (512)
                      .+.+.|++++|+..|+++.+..+. ++.+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++
T Consensus        34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~  111 (537)
T 3fp2_A           34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD  111 (537)
T ss_dssp             HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence            467899999999999999998543 78899999999999999999999999998864 3467789999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCC--CCcchhHHHHHHHHHhcCChhhHHH
Q 010342           83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDSLCRSGRNHGASR  160 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~  160 (512)
                      |...+. .+...+       +  .....+..+...+...+|...++.+....+  .+........+..+....+.+.+..
T Consensus       112 A~~~~~-~~~~~~-------~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          112 AMFDLS-VLSLNG-------D--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHHHH-HHC--------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHH-HHhcCC-------C--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            998874 332211       1  111234455566667889999988866421  1111122334555555666555544


Q ss_pred             HHHHHHHcCCCCCcc-hHHHHHHHHhc--------cCchhHHHHHHHHHHhCCCCCc-------hhhHHHHHHHHhccCC
Q 010342          161 VVYVMRKRGLTPSLV-SYNSIVHGLCK--------HGGCMRAYQLLEEGIQFGYLPS-------EHTYKVLVEGLCGESD  224 (512)
Q Consensus       161 ~~~~~~~~g~~p~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~  224 (512)
                      .+......  .+... ....+...+..        .|++++|..+++++.+.. +.+       ..++..+...+...|+
T Consensus       182 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~  258 (537)
T 3fp2_A          182 SVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNN  258 (537)
T ss_dssp             TSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhccc
Confidence            33322211  11111 22233333222        247889999999988653 222       2356677788889999


Q ss_pred             HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND  304 (512)
Q Consensus       225 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  304 (512)
                      +++|...++.+....  |+...+..+...+...|++++|...+....+..+. +..++..+...+...|++++|...+++
T Consensus       259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~  335 (537)
T 3fp2_A          259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQK  335 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            999999999998753  33678888889999999999999999999887643 678899999999999999999999999


Q ss_pred             HhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--
Q 010342          305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV--  382 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--  382 (512)
                      .....  +.+...+..+...+...|++++|...+.+.+...  +.+...+..+...+...|++++|...|+++.+...  
T Consensus       336 a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          336 AQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             HHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            98865  5567888999999999999999999999977654  45567888899999999999999999999876421  


Q ss_pred             ---CCChHhHHHHHHHHHhc----------CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          383 ---VADSTTYAIVIDGLCES----------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       383 ---~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                         ......+..+..++...          |++++|...++++.+.. +.+..++..+..+|...|++++|.+.|++..+
T Consensus       412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence               11122244556777777          99999999999998765 56778899999999999999999999999998


Q ss_pred             CC
Q 010342          450 SG  451 (512)
Q Consensus       450 ~~  451 (512)
                      ..
T Consensus       491 ~~  492 (537)
T 3fp2_A          491 LA  492 (537)
T ss_dssp             HC
T ss_pred             hC
Confidence            64

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=2.1e-23  Score=195.97  Aligned_cols=357  Identities=12%  Similarity=0.038  Sum_probs=289.3

Q ss_pred             CcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHH
Q 010342          137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV  216 (512)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  216 (512)
                      .+...+..+...+.+.|++++|...|+.+.+... .+..+|..+..++...|++++|...|+++.+.+ +.+..++..+.
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  101 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            4567788899999999999999999999988643 367899999999999999999999999999875 55678999999


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCCCCc---ccHHHH------------HHHHHccCChhhHHHHHHHHHhcCCCCChhh
Q 010342          217 EGLCGESDLEKARKVLQFMLSKKDVDRT---RICNIY------------LRALCLIKNPTELLNVLVFMLQTQCQPDVIT  281 (512)
Q Consensus       217 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  281 (512)
                      .++...|++++|.+.|+.+.... +.+.   ..+..+            ...+...|++++|...++.+.+..+ .+...
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  179 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL  179 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence            99999999999999999998643 2233   444444            4458889999999999999998754 37788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH----
Q 010342          282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV----  357 (512)
Q Consensus       282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----  357 (512)
                      +..+..+|.+.|++++|...|+++.+..  +.+..++..+...+...|++++|...|.+++...  +.+...+..+    
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~  255 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVK  255 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHH
Confidence            9999999999999999999999998765  6778999999999999999999999999977443  2333444444    


Q ss_pred             --------HHHHHccCCHHHHHHHHHHHHhCCCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhH
Q 010342          358 --------LRGLFRLRRVEEAKEVFNCMLGIGVVAD-----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY  424 (512)
Q Consensus       358 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  424 (512)
                              ...+.+.|++++|...|+++.+..  |+     ...+..+..++.+.|++++|...++++.+.. +.+..+|
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~  332 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL  332 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence                    788999999999999999998853  44     3478889999999999999999999998754 5578899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH------------HHhcC-----CHHHHHHHHHHH-HHCC
Q 010342          425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG------------ACKLS-----MKREAYQILREM-RKNG  486 (512)
Q Consensus       425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~m-~~~~  486 (512)
                      ..++.+|...|++++|...++++.+..+ -+...+..+..+            |...|     +.+++.+.++++ .+  
T Consensus       333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--  409 (450)
T 2y4t_A          333 KDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--  409 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--
Confidence            9999999999999999999999998642 245666666533            33344     566778888874 33  


Q ss_pred             CCCCh-----------HHHHHHHHhhccCCCC
Q 010342          487 LNPDA-----------VTWRILDKLHGNRGND  507 (512)
Q Consensus       487 ~~p~~-----------~~~~~l~~~~~~~g~~  507 (512)
                      ..||.           ..+..+..+|...|+.
T Consensus       410 ~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~  441 (450)
T 2y4t_A          410 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP  441 (450)
T ss_dssp             SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred             hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence            34432           2667777887777664

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=6.2e-20  Score=166.69  Aligned_cols=328  Identities=12%  Similarity=0.055  Sum_probs=197.8

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010342          141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC  220 (512)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  220 (512)
                      .+..+...+...|++++|...|+.+.+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence            4445555666666666666666666654322 45566666666666666666666666666543 334556666666666


Q ss_pred             ccCCHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 010342          221 GESDLEKARKVLQFMLSKKDV--DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA  298 (512)
Q Consensus       221 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  298 (512)
                      ..|++++|...++.+......  .+...+..+....                       ....+..+...+...|++++|
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~~~A  139 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADYTAA  139 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCHHHH
Confidence            666666666666666543110  1111111111000                       011122334556666666666


Q ss_pred             HHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 010342          299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML  378 (512)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  378 (512)
                      ...++++.+..  +.+...+..+...+...|++++|...+.+.+...  +.+...+..+...+...|++++|...+++..
T Consensus       140 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          140 ITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            66666666544  4455666666666666666666666666654332  3445566666666666667777776666666


Q ss_pred             hCCCCCChHhHH------------HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHH
Q 010342          379 GIGVVADSTTYA------------IVIDGLCESNQLDEAKRFWDDIVWPSNIHDN----YVYAAMIKGLCRSGKIHEAVH  442 (512)
Q Consensus       379 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~  442 (512)
                      +.. +.+...+.            .+...+...|++++|...++++.+.. +.+.    ..+..+..++...|++++|..
T Consensus       216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~  293 (359)
T 3ieg_A          216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIR  293 (359)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            542 22222222            23566778888888888888887654 2233    234456778888888888888


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhc
Q 010342          443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG  502 (512)
Q Consensus       443 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~  502 (512)
                      .+++..+.. +.+..+|..+...+...|++++|.+.++++.+  +.|+ ...+..+.++..
T Consensus       294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence            888888763 33677888888888888888888888888887  4455 445555555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=7.4e-20  Score=166.21  Aligned_cols=329  Identities=11%  Similarity=0.022  Sum_probs=226.2

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 010342          105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL  184 (512)
Q Consensus       105 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  184 (512)
                      ..+..+...+...|++++|...|+++.+..+ .+..++..+..++...|++++|...++...+.... +...+..+...+
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~   81 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence            3445566677777777777777777665443 34567777888888888888888888888876422 557788888888


Q ss_pred             hccCchhHHHHHHHHHHhCCCC---CchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChh
Q 010342          185 CKHGGCMRAYQLLEEGIQFGYL---PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT  261 (512)
Q Consensus       185 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  261 (512)
                      ...|++++|...++++.+.. +   .+...+..+.....       +.                .+......+...|+++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-------~~----------------~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-------MQ----------------RLRSQALDAFDGADYT  137 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHTTCHH
T ss_pred             HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHccCHH
Confidence            88899999999988887653 2   23333333321110       00                1222334445555556


Q ss_pred             hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342          262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV  341 (512)
Q Consensus       262 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  341 (512)
                      +|...++.+.+..+ .+...+..+..++...|++++|...+++.....  +.+...+..+...+...|++++|...+.+.
T Consensus       138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66665555555432 356667777777788888888888888777654  566777777777888888888888888776


Q ss_pred             cccCCCCCChhhHH------------HHHHHHHccCCHHHHHHHHHHHHhCCCCCCh----HhHHHHHHHHHhcCCHHHH
Q 010342          342 MPQRGYSPGIVTYN------------AVLRGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEA  405 (512)
Q Consensus       342 ~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a  405 (512)
                      +...  +.+...+.            .+...+.+.|++++|...++++.+.. +.+.    ..+..+..++...|++++|
T Consensus       215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          215 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence            6443  22222222            23566888999999999999988854 2233    2355577889999999999


Q ss_pred             HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      ...++++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +-+...+..+..+..
T Consensus       292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            99999998764 5577889999999999999999999999998864 224555655555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.1e-19  Score=162.89  Aligned_cols=291  Identities=11%  Similarity=0.026  Sum_probs=206.1

Q ss_pred             CchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 010342          207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI  286 (512)
Q Consensus       207 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  286 (512)
                      .+...+..+...+...|++++|.++++.+... .+.+...+..++..+...|++++|...+..+.+..+ .+...+..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence            34445555555555566666666666665543 233344455555555666666666666666665542 2566777777


Q ss_pred             HHHHhcC-CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC
Q 010342          287 NGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR  365 (512)
Q Consensus       287 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  365 (512)
                      ..+...| ++++|...|++.....  +.+...+..+...+...|++++|...+.+.+...  +.+...+..+...+...|
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence            8888888 8888888888887665  4566777888888888888888888888766543  334556666778888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC--------CCCCHHhHHHHHHHHHhcCCH
Q 010342          366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--------NIHDNYVYAAMIKGLCRSGKI  437 (512)
Q Consensus       366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~  437 (512)
                      ++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..        .+.+..++..+..++...|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            8888888888888764 5566778888888888888888888888876421        133456788888888888999


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHhh-ccCCCC
Q 010342          438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILDKLH-GNRGND  507 (512)
Q Consensus       438 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~-~~~g~~  507 (512)
                      ++|...+++..+.. +.+...+..+...+.+.|++++|.+.++++.+  +.| +...+..+..++ ...|+.
T Consensus       253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence            99999998888764 33677888888888889999999999888876  345 456677777766 455543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=2.6e-19  Score=160.60  Aligned_cols=270  Identities=8%  Similarity=-0.014  Sum_probs=143.7

Q ss_pred             CcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHH
Q 010342          137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV  216 (512)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  216 (512)
                      .+...+..+...+...|++++|.++|+.+.+.... +...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            34445556666777777777777777777665332 44566666677777777777777777776643 34556666777


Q ss_pred             HHHhccC-CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 010342          217 EGLCGES-DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI  295 (512)
Q Consensus       217 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  295 (512)
                      ..+...| ++++|...+++.... .+.....+..+...+...|++++|...++...+.... +...+..+...+...|++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence            7777777 777777777777643 2223344445555555555555555555555444322 233444455555555555


Q ss_pred             HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCC-------CCCChhhHHHHHHHHHccCCHH
Q 010342          296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-------YSPGIVTYNAVLRGLFRLRRVE  368 (512)
Q Consensus       296 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~  368 (512)
                      ++|...+++..+..  +.+...+..+...+...|++++|...+.+.+....       .+.....+..+...+...|+++
T Consensus       176 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          176 KLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            55555555555443  33444555555555555555555555544432210       0112233444444444444444


Q ss_pred             HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       369 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      +|...+++..+.. +.+...+..+..+|...|++++|...++++.
T Consensus       254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4444444444332 2233344444444444444444444444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=8.2e-18  Score=160.77  Aligned_cols=415  Identities=10%  Similarity=0.024  Sum_probs=266.3

Q ss_pred             cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCChhhH
Q 010342            5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV-LRTRDVERA   83 (512)
Q Consensus         5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~~~~~~a   83 (512)
                      .+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|+++...  .|+...|...+... ...|+.+.|
T Consensus        23 ~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a   99 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSY   99 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred             HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhH
Confidence            4578899999999999887 3336778889999999999999999999999876  36777777766533 346777777


Q ss_pred             HHHHHHHHHHhhhcCCCCc-chHhHHHHHHHHHc---------cCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcC
Q 010342           84 NVLMFKLWERMKEEEDLSV-NNAAFANLVDSLCR---------EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG  153 (512)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  153 (512)
                      .+.+.+++++.....+..| +...|...+....+         .|++++|..+|++.......+....|..........+
T Consensus       100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~  179 (530)
T 2ooe_A          100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN  179 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence            7655555554433223332 34556666665544         6788888888888776211111122222211110000


Q ss_pred             ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHH------HhCC---CCCc--------hhhHHHHH
Q 010342          154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG------IQFG---YLPS--------EHTYKVLV  216 (512)
Q Consensus       154 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~  216 (512)
                      .                    .+...++.  ...+++..|..++...      .+..   ++|+        ...|...+
T Consensus       180 ~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~  237 (530)
T 2ooe_A          180 I--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI  237 (530)
T ss_dssp             H--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred             h--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence            0                    00000110  1223344454444431      1111   1222        13444444


Q ss_pred             HHHhc----cCCH----HHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-------cCChh-------hHHHHHHHHHhcC
Q 010342          217 EGLCG----ESDL----EKARKVLQFMLSKKDVDRTRICNIYLRALCL-------IKNPT-------ELLNVLVFMLQTQ  274 (512)
Q Consensus       217 ~~~~~----~g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~  274 (512)
                      .....    .++.    ..+..+|++.... .+.+...|..++..+..       .|+.+       +|..+++...+.-
T Consensus       238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~  316 (530)
T 2ooe_A          238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL  316 (530)
T ss_dssp             HHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence            33221    1222    3566677776653 34456667767666664       57765       7888888877632


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhh
Q 010342          275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA-VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT  353 (512)
Q Consensus       275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  353 (512)
                      .+.+...|..++..+.+.|++++|..+|+++.+..  +.+. ..|..++..+.+.|+.++|..+|.+.+...  +.+...
T Consensus       317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~  392 (530)
T 2ooe_A          317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHV  392 (530)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHH
Confidence            23467788888888889999999999999988754  3333 578888888888899999999998876543  222233


Q ss_pred             HHHHHHH-HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-CC--CHHhHHHHHH
Q 010342          354 YNAVLRG-LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-IH--DNYVYAAMIK  429 (512)
Q Consensus       354 ~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~  429 (512)
                      |...... +...|+.++|..+|+...+.. +.+...+..++..+.+.|+.++|..+|++++.... .|  ....|...+.
T Consensus       393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~  471 (530)
T 2ooe_A          393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA  471 (530)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            3322222 335899999999999888753 45677888999999999999999999999987532 22  2447888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 010342          430 GLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       430 ~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .....|+.+.+..+++++.+.
T Consensus       472 ~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          472 FESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            888889999999999888775

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=2.7e-17  Score=157.20  Aligned_cols=427  Identities=9%  Similarity=0.019  Sum_probs=279.1

Q ss_pred             HHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhh
Q 010342           17 FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE   96 (512)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   96 (512)
                      |++.++..+. +..+|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..++.+++..   
T Consensus         2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---   75 (530)
T 2ooe_A            2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---   75 (530)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---
T ss_pred             hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Confidence            5555555333 6778888888 477899999999999998753 346667888888888888888888877776532   


Q ss_pred             cCCCCcchHhHHHHHHHH-HccCChhHHHH----HHHhcCCC-CCC-CcchhHHHHHHHHHh---------cCChhhHHH
Q 010342           97 EEDLSVNNAAFANLVDSL-CREGYVNEVFR----IAEDMPQG-KSV-NEEFACGHMIDSLCR---------SGRNHGASR  160 (512)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~  160 (512)
                          .|+...|..++... ...|+.++|.+    +|+..... |.. ++...|...+.....         .|+++.|..
T Consensus        76 ----~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (530)
T 2ooe_A           76 ----VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR  151 (530)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred             ----CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence                24444555555422 34566665554    55443221 221 233455555544433         455556666


Q ss_pred             HHHHHHHcCCCCCc---chHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH--
Q 010342          161 VVYVMRKRGLTPSL---VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM--  235 (512)
Q Consensus       161 ~~~~~~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--  235 (512)
                      +|+...+.   |..   ..|..........+.                    .+...++.  ...+++..|..+++.+  
T Consensus       152 ~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~  206 (530)
T 2ooe_A          152 VYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYET  206 (530)
T ss_dssp             HHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHH
Confidence            66555542   211   111111110000000                    00011110  1234566677666652  


Q ss_pred             ----HhCC---CCCCc--------ccHHHHHHHHHcc----CCh----hhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-
Q 010342          236 ----LSKK---DVDRT--------RICNIYLRALCLI----KNP----TELLNVLVFMLQTQCQPDVITLNTVINGFCK-  291 (512)
Q Consensus       236 ----~~~~---~~~~~--------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  291 (512)
                          .+..   .+|..        ..|..++......    ++.    ..+...|++.+...+ .+...|..++..+.+ 
T Consensus       207 ~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~  285 (530)
T 2ooe_A          207 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQS  285 (530)
T ss_dssp             HHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHh
Confidence                2221   12221        2344444332221    222    367788888887643 367788888888775 


Q ss_pred             ------cCCHH-------HHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-h-hhHHH
Q 010342          292 ------MGRIE-------EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-I-VTYNA  356 (512)
Q Consensus       292 ------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~  356 (512)
                            .|+++       +|..+|++..+.-. +.+...|..++..+.+.|++++|..+|++.+..   .|+ . ..|..
T Consensus       286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~-p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~  361 (530)
T 2ooe_A          286 SKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQ  361 (530)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHH
T ss_pred             chhhhhccchhhhhhhhHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHH
Confidence                  68876       89999999986321 567889999999999999999999999998753   444 2 47888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH-HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG  435 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  435 (512)
                      ++..+.+.|++++|..+|++..+.. +.+...+...... +...|+.++|..+|++.++.. +.+...|..++..+.+.|
T Consensus       362 ~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g  439 (530)
T 2ooe_A          362 YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLN  439 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCC
Confidence            8888889999999999999999853 3333344333222 346899999999999998764 557889999999999999


Q ss_pred             CHHHHHHHHHHHHHCCC-CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          436 KIHEAVHFLYELVDSGV-TPN--IVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       436 ~~~~a~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      +.++|..+|++.+..+. .|+  ...|...+......|+.+.+..+.+++.+.
T Consensus       440 ~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          440 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999998742 222  347888888888899999999999998763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.85  E-value=8.9e-17  Score=151.98  Aligned_cols=383  Identities=8%  Similarity=-0.083  Sum_probs=251.6

Q ss_pred             ChhhHHHHHHHHHh----cCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHc----cCChhHHHHHHHhcCCCC
Q 010342           63 NSLTYSVLVRGVLR----TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR----EGYVNEVFRIAEDMPQGK  134 (512)
Q Consensus        63 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  134 (512)
                      ++..+..+...|..    .+++++|...+.+..+.        -+...+..|...|..    .+++++|.+.|++..+.+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  109 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG  109 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            44455555555554    55555555555554431        123344445555555    556666666666554433


Q ss_pred             CCCcchhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCchhHHHHHHHHHHhCCCC
Q 010342          135 SVNEEFACGHMIDSLCR----SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK----HGGCMRAYQLLEEGIQFGYL  206 (512)
Q Consensus       135 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~  206 (512)
                         +...+..+...|..    .+++++|...|+...+.|   +...+..+...|..    .++.++|.+.|++..+.+  
T Consensus       110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--  181 (490)
T 2xm6_A          110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--  181 (490)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred             ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence               23444555555655    566777777777666654   44556666666655    667777777777776643  


Q ss_pred             CchhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCCC
Q 010342          207 PSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL----IKNPTELLNVLVFMLQTQCQPD  278 (512)
Q Consensus       207 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~  278 (512)
                       +...+..+...|..    .+++++|.++|++..+.+   +...+..+...+..    .+++++|..+++...+.+   +
T Consensus       182 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  254 (490)
T 2xm6_A          182 -NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N  254 (490)
T ss_dssp             -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred             -CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence             45566666666665    677777777777776543   33455555555554    667777777777776654   4


Q ss_pred             hhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc-----CCHHHHHHHHHhhcccCCCCC
Q 010342          279 VITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-----GRIQEALNLLYQVMPQRGYSP  349 (512)
Q Consensus       279 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~  349 (512)
                      ...+..+...|..    .+++++|+..|++..+.+    +...+..+...+...     +++++|..+|.+....    .
T Consensus       255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~  326 (490)
T 2xm6_A          255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----G  326 (490)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----T
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----C
Confidence            4566667777777    788999999999887643    455666777777776     8999999999886643    2


Q ss_pred             ChhhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHH
Q 010342          350 GIVTYNAVLRGLFRLR---RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNY  422 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~  422 (512)
                      +...+..+...|...|   +.++|...|++..+.|   +...+..|...|..    .+++++|...|++..+.+   +..
T Consensus       327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~  400 (490)
T 2xm6_A          327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSA  400 (490)
T ss_dssp             CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHH
Confidence            4556667777776655   7889999999988864   66778888888888    789999999999988765   466


Q ss_pred             hHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          423 VYAAMIKGLCR----SGKIHEAVHFLYELVDSGVT-P-NIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       423 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .+..|...|..    .+++++|...|++..+.+.. | +......+...+.  .+.+.+.+...+..+
T Consensus       401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~  466 (490)
T 2xm6_A          401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIE  466 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHH
Confidence            78888888887    78999999999999887643 2 3334444433332  234445544444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=1.7e-19  Score=164.50  Aligned_cols=266  Identities=13%  Similarity=-0.008  Sum_probs=185.0

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010342          211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC  290 (512)
Q Consensus       211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  290 (512)
                      .+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++.+.+..+ .+...+..+..++.
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~  143 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT  143 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence            3444555555555555555555555432 223334444555555555555555555555554432 25556666666777


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCcHHHHHH---------------HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHH
Q 010342          291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTT---------------IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN  355 (512)
Q Consensus       291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  355 (512)
                      ..|++++|...++++....  +.+...+..               .+..+...|++++|...+.+.+......++..++.
T Consensus       144 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  221 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC  221 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence            7777777777777766544  222222211               12333388899999999988776553333577888


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010342          356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG  435 (512)
Q Consensus       356 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  435 (512)
                      .+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|...|
T Consensus       222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g  299 (368)
T 1fch_A          222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG  299 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence            89999999999999999999988864 5567789999999999999999999999988764 566788999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCC----------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          436 KIHEAVHFLYELVDSGVTP----------NIVCYNVVIDGACKLSMKREAYQILREM  482 (512)
Q Consensus       436 ~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m  482 (512)
                      ++++|...++++.+.....          ...+|..+..++...|++++|..++++.
T Consensus       300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence            9999999999988643221          1578999999999999999999887643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=5.2e-19  Score=161.23  Aligned_cols=307  Identities=9%  Similarity=-0.042  Sum_probs=204.8

Q ss_pred             HHccCChhHHHH-HHHhcCCCCC---CCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc
Q 010342          114 LCREGYVNEVFR-IAEDMPQGKS---VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG  189 (512)
Q Consensus       114 ~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~  189 (512)
                      +...|++++|.. .+++.....+   ..+...+..+...+...|++++|...|+.+.+.... +..++..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence            445578888888 8886554332   224566778889999999999999999999887433 66788889999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHH
Q 010342          190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF  269 (512)
Q Consensus       190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  269 (512)
                      +++|.+.++++.+.. +.+..++..+...+...|++++|.+.++.+...... ....+......       ..       
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------  177 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------  177 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence            999999999988765 557788888999999999999999999998865322 22221111000       00       


Q ss_pred             HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCC
Q 010342          270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP  349 (512)
Q Consensus       270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  349 (512)
                          ...+. ..+..+. .+...|++++|...++++.......++..++..+...+...|++++|...+.+.+...  +.
T Consensus       178 ----~~~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~  249 (368)
T 1fch_A          178 ----GAGLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PN  249 (368)
T ss_dssp             -------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred             ----hhccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence                00000 0111222 2236677888888888777654211256777777778888888888888887766443  34


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC----------C
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI----------H  419 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~  419 (512)
                      +...+..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...++++.+....          .
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  328 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM  328 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence            56677777778888888888888888877753 455667778888888888888888888877643211          1


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          420 DNYVYAAMIKGLCRSGKIHEAVHFLYE  446 (512)
Q Consensus       420 ~~~~~~~l~~~~~~~g~~~~a~~~~~~  446 (512)
                      ...+|..+..+|...|++++|..++.+
T Consensus       329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          329 SENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            156788888888888888888777654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.85  E-value=1.6e-16  Score=150.30  Aligned_cols=353  Identities=8%  Similarity=-0.050  Sum_probs=292.8

Q ss_pred             chHhHHHHHHHHHc----cCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCc
Q 010342          103 NNAAFANLVDSLCR----EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR----SGRNHGASRVVYVMRKRGLTPSL  174 (512)
Q Consensus       103 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~  174 (512)
                      +...+..+...|..    .+++++|+..|++..+.+   +..++..|...|..    .+++++|.+.|+...+.|   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            34455567777777    899999999999887654   45677778888888    899999999999998875   66


Q ss_pred             chHHHHHHHHhc----cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCccc
Q 010342          175 VSYNSIVHGLCK----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRI  246 (512)
Q Consensus       175 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~  246 (512)
                      ..+..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|.++|++..+.+   +...
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            778888888887    889999999999998865   45677778777876    889999999999998764   4667


Q ss_pred             HHHHHHHHHc----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcHHHH
Q 010342          247 CNIYLRALCL----IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTF  318 (512)
Q Consensus       247 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  318 (512)
                      +..+...|..    .+++++|..+++...+.+   +...+..+...|..    .+++++|...|++..+.+    +...+
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~  258 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQ  258 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence            7788888887    899999999999998875   56677788888886    789999999999998753    45566


Q ss_pred             HHHHHHHhh----cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCChHhH
Q 010342          319 TTIIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTY  389 (512)
Q Consensus       319 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~  389 (512)
                      ..+...+..    .++.++|+.+|.+....    .++..+..+...|...     +++++|...|++..+.|   +...+
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~  331 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ  331 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence            677777777    89999999999987643    2556777777888776     89999999999999865   45677


Q ss_pred             HHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 010342          390 AIVIDGLCESN---QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVTPNIVCYNVV  462 (512)
Q Consensus       390 ~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  462 (512)
                      ..+...|...|   ++++|.+.+++..+.+   +...+..|...|..    .+++++|.+.|++..+.+   +...+..|
T Consensus       332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L  405 (490)
T 2xm6_A          332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL  405 (490)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence            78888888766   8899999999998764   56788889999988    899999999999999875   56788889


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHCCC
Q 010342          463 IDGACK----LSMKREAYQILREMRKNGL  487 (512)
Q Consensus       463 ~~~~~~----~g~~~~a~~~~~~m~~~~~  487 (512)
                      ...|..    .+++++|...|++..+.+.
T Consensus       406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          406 GEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            999988    8999999999999998763

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.83  E-value=9.1e-19  Score=155.26  Aligned_cols=285  Identities=10%  Similarity=0.058  Sum_probs=132.4

Q ss_pred             ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010342            6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV   85 (512)
Q Consensus         6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   85 (512)
                      +.|++++|.+.++++.      ++.+|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|..
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            4678999999999883      2358999999999999999999999653      577899999999999999999988


Q ss_pred             HHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHH
Q 010342           86 LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM  165 (512)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  165 (512)
                      .+....+.       .+++.+.+.++.+|.+.|+++++.++++.       |+..+|..+...|...|.+++|...|..+
T Consensus        83 yl~~ark~-------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a  148 (449)
T 1b89_A           83 YLQMARKK-------ARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV  148 (449)
T ss_dssp             ---------------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT
T ss_pred             HHHHHHHh-------CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            66554432       23355667799999999999998887753       66679999999999999999999999966


Q ss_pred             HHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 010342          166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR  245 (512)
Q Consensus       166 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  245 (512)
                               ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......     ....+.
T Consensus       149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad  208 (449)
T 1b89_A          149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHAD  208 (449)
T ss_dssp             ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHH
T ss_pred             ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHh
Confidence                     47999999999999999999999987      3788999999999999999999655443     223334


Q ss_pred             cHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------cHHHHH
Q 010342          246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP------DAVTFT  319 (512)
Q Consensus       246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~  319 (512)
                      ....++..|.+.|.++++..+++..+... +-....|+.+.-+|++- ++++..+.++....+-.++|      +...|.
T Consensus       209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~  286 (449)
T 1b89_A          209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA  286 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            45567788899999999999999888665 44667777777777664 44444444444333222122      356688


Q ss_pred             HHHHHHhhcCCHHHHHHHH
Q 010342          320 TIIFGLLNVGRIQEALNLL  338 (512)
Q Consensus       320 ~l~~~~~~~~~~~~a~~~~  338 (512)
                      .+...|.+.++++.|...+
T Consensus       287 e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          287 ELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhhchHHHHHHHH
Confidence            8888889999999888755

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=2.3e-19  Score=163.28  Aligned_cols=267  Identities=10%  Similarity=-0.017  Sum_probs=182.1

Q ss_pred             cchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 010342          174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA  253 (512)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  253 (512)
                      ...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++....              
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------  129 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------------  129 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence            3445666666666666666666666666543 3345566666666666666666666666655421              


Q ss_pred             HHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc----------HHHHHHHHH
Q 010342          254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD----------AVTFTTIIF  323 (512)
Q Consensus       254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~  323 (512)
                                            +.+...+..+..+|...|++++|...++++.+..  +.+          ...+..+..
T Consensus       130 ----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~  185 (365)
T 4eqf_A          130 ----------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSK  185 (365)
T ss_dssp             ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC----------------
T ss_pred             ----------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHH
Confidence                                  1245556666666666666666666666665532  111          222334467


Q ss_pred             HHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHH
Q 010342          324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD  403 (512)
Q Consensus       324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  403 (512)
                      .+...|++++|...+.+.+......++..++..+...+...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  264 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSE  264 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            7788888888888888877655333367788888888888899999999998888764 556778888999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CChhhHHHHHHHHHhcCCH
Q 010342          404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT-----------PNIVCYNVVIDGACKLSMK  472 (512)
Q Consensus       404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~  472 (512)
                      +|...++++++.. +.+..++..+..+|...|++++|...|+++.+....           .+..+|..+..++...|+.
T Consensus       265 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  343 (365)
T 4eqf_A          265 EAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP  343 (365)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence            9999999988764 556778888999999999999999999988764211           1367789999999999999


Q ss_pred             HHHHHHHHH
Q 010342          473 REAYQILRE  481 (512)
Q Consensus       473 ~~a~~~~~~  481 (512)
                      +.+.+..++
T Consensus       344 ~~a~~~~~~  352 (365)
T 4eqf_A          344 ELFQAANLG  352 (365)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            888877654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.82  E-value=2.7e-17  Score=145.89  Aligned_cols=353  Identities=14%  Similarity=0.102  Sum_probs=169.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL  110 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (512)
                      +.+.|+.   +.|+.++|.+.++++.      ++.+|+.++.++.+.|++++|...+.+           .++..+|..+
T Consensus         8 a~~~ll~---~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-----------a~D~~~y~~V   67 (449)
T 1b89_A            8 AVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-----------ADDPSSYMEV   67 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHH---HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-----------CCCHHHHHHH
Confidence            3444444   6778999999999993      335899999999999999999887743           2466788899


Q ss_pred             HHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCch
Q 010342          111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC  190 (512)
Q Consensus       111 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~  190 (512)
                      +..+...|++++|+++++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+
T Consensus        68 ~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~y  138 (449)
T 1b89_A           68 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMY  138 (449)
T ss_dssp             -------------------------------------------CHHHHTTTTT-------CC----------------CT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCH
Confidence            99999999999999988877664  3556778889999999999999988874       36778999999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHH
Q 010342          191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM  270 (512)
Q Consensus       191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  270 (512)
                      ++|...|..+         ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|...... 
T Consensus       139 eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-  202 (449)
T 1b89_A          139 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-  202 (449)
T ss_dssp             TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred             HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence            9999999976         47999999999999999999999988      3577899999999999999999654443 


Q ss_pred             HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc--CCHHHHHHHHHhhcccCCCC
Q 010342          271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV--GRIQEALNLLYQVMPQRGYS  348 (512)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~  348 (512)
                          +...+.....++..|.+.|.+++|+.+++......  +.....|+.+.-+|++-  ++..+.++.|..   ...++
T Consensus       203 ----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~  273 (449)
T 1b89_A          203 ----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIP  273 (449)
T ss_dssp             ----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHH
T ss_pred             ----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCc
Confidence                22344445678899999999999999999998765  56677777777666653  445555555543   44555


Q ss_pred             C------ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 010342          349 P------GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY  422 (512)
Q Consensus       349 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  422 (512)
                      |      +...|..+...|.+.++++.|...   |.+.  +++..-.....+...+..+.+--.+...-.+..  .|.  
T Consensus       274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~--  344 (449)
T 1b89_A          274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--  344 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHH--
Confidence            5      567899999999999999988775   4432  445444445555555555555433333333211  232  


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYE  446 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~  446 (512)
                      .++.|+.++...=|...+..+|++
T Consensus       345 ~l~~ll~~l~~~ld~~r~v~~~~~  368 (449)
T 1b89_A          345 LLNDLLMVLSPRLDHTRAVNYFSK  368 (449)
T ss_dssp             GHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHH
Confidence            466666666666666666666543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=8.6e-19  Score=159.50  Aligned_cols=257  Identities=11%  Similarity=-0.058  Sum_probs=203.8

Q ss_pred             cccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Q 010342          244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF  323 (512)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  323 (512)
                      ...+......+...|++++|...++.+.+..+ .+...+..+..++...|++++|+..|+++.+..  +.+..++..+..
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~  141 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV  141 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence            44577777778888888888888888877654 378889999999999999999999999998865  567889999999


Q ss_pred             HHhhcCCHHHHHHHHHhhcccCCCCCC--------hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--ChHhHHHHH
Q 010342          324 GLLNVGRIQEALNLLYQVMPQRGYSPG--------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIVI  393 (512)
Q Consensus       324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~  393 (512)
                      .+...|++++|...+.+.+....-.++        ...+..+...+...|++++|...++++.+.. +.  +..++..+.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence            999999999999999997754311111        1223345778899999999999999999864 33  678999999


Q ss_pred             HHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010342          394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR  473 (512)
Q Consensus       394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  473 (512)
                      ..|...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|.+.|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence            99999999999999999998765 5678899999999999999999999999999874 335788999999999999999


Q ss_pred             HHHHHHHHHHHCC---CCC--------ChHHHHHHHHhhccCCC
Q 010342          474 EAYQILREMRKNG---LNP--------DAVTWRILDKLHGNRGN  506 (512)
Q Consensus       474 ~a~~~~~~m~~~~---~~p--------~~~~~~~l~~~~~~~g~  506 (512)
                      +|.+.++++.+..   ..|        +...|..|..++...|+
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  342 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ  342 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence            9999999987531   011        25678888877766554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=9.4e-16  Score=152.12  Aligned_cols=261  Identities=10%  Similarity=0.025  Sum_probs=115.7

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010342          141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC  220 (512)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  220 (512)
                      +|..+..++...|++++|...|.+.      -|...|..++.++.+.|++++|.+.+...++..  +++...+.++.+|+
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence            4444444444444444444444321      133444444444444444444444444443322  11111112444444


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010342          221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK  300 (512)
Q Consensus       221 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  300 (512)
                      +.++++....+.    .   .++...+..+...+...|++++|...|...         ..|..+..++.+.|+++.|.+
T Consensus      1179 Kl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A         1179 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred             hhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence            444444322221    0   111122333444444444444444444432         244444444444444444444


Q ss_pred             HHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342          301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI  380 (512)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  380 (512)
                      .+++.       .+..+|..+..+|...|++..|......      +..++..+..++..|.+.|.+++|+.+++.....
T Consensus      1243 aarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1243 GARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             HHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            44433       2234444444444444444444443321      1223344555666666666666666666655543


Q ss_pred             CCCCChHhHHHHHHHHHhc--CCHHHHHHHHHHhhcCCCCC------CHHhHHHHHHHHHhcCCHHHHH
Q 010342          381 GVVADSTTYAIVIDGLCES--NQLDEAKRFWDDIVWPSNIH------DNYVYAAMIKGLCRSGKIHEAV  441 (512)
Q Consensus       381 ~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~  441 (512)
                      . +.....|+-+..+|++.  ++..++.++|..-..  +++      +...|..+.-.|.+.|+++.|.
T Consensus      1310 e-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1310 E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            3 33334454455444443  233444444443221  111      3445666666666666666665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=2.5e-15  Score=149.09  Aligned_cols=383  Identities=12%  Similarity=0.097  Sum_probs=292.9

Q ss_pred             ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010342           28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA  105 (512)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  105 (512)
                      ++.--...+++|+..|.+.+|+++++++...+-  .-+...-+.++.+..+. +..+......++-            ..
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd------------~~ 1050 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD------------NY 1050 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh------------hc
Confidence            444557788889999999999999999985421  12334455566666665 5565555443331            11


Q ss_pred             hHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh
Q 010342          106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC  185 (512)
Q Consensus       106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~  185 (512)
                      ....+...+...|.+++|..+|++...     ...+.+.++   ...+++++|.++.++..      +..+|..+..++.
T Consensus      1051 d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A         1051 DAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQL 1116 (1630)
T ss_pred             cHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHH
Confidence            123388889999999999999999642     112222232   27789999999988652      5789999999999


Q ss_pred             ccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHH
Q 010342          186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN  265 (512)
Q Consensus       186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  265 (512)
                      ..|++++|.+.|.+.      .|...|..++.++.+.|++++|.+++....+..  +++.....++.+|++.+++++...
T Consensus      1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A         1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred             hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence            999999999999663      567788899999999999999999999887654  333344568899999998886554


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC
Q 010342          266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR  345 (512)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  345 (512)
                      .+    +   .++...|..+...|...|++++|...|...          ..|..+..++.+.|++++|.+.+.+.    
T Consensus      1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A         1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred             HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence            43    1   446677888999999999999999999975          36899999999999999999999874    


Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH
Q 010342          346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA  425 (512)
Q Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  425 (512)
                         .+..+|..+..+|...|++..|......     +..++..+..++..|.+.|.+++|..+++..+... +-....|+
T Consensus      1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmft 1318 (1630)
T 1xi4_A         1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 1318 (1630)
T ss_pred             ---CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHH
Confidence               3668999999999999999999887653     34567778899999999999999999999987665 55666787


Q ss_pred             HHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------ChhhHHHHHHHHHhcCCHHHHHH
Q 010342          426 AMIKGLCRS--GKIHEAVHFLYELVDSGVTP------NIVCYNVVIDGACKLSMKREAYQ  477 (512)
Q Consensus       426 ~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~  477 (512)
                      -|...|++-  ++..++.+.|..-.  +++|      +...|.-++..|.+.|+++.|..
T Consensus      1319 ELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1319 ELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            787777764  34555555554322  2222      45679999999999999999983

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=1.2e-17  Score=149.42  Aligned_cols=154  Identities=9%  Similarity=-0.051  Sum_probs=123.0

Q ss_pred             HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  404 (512)
                      +...|++++|...+.+.+...  +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  224 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE  224 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence            566777888888887766443  3456677778888888888888888888887754 4567788888889999999999


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHHHhcCCHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-----------NIVCYNVVIDGACKLSMKR  473 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~  473 (512)
                      |...++++.+.. +.+..++..+...+...|++++|.+.++++.+.....           +...|..+..++.+.|+++
T Consensus       225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence            999999887654 5567788889999999999999999999988754332           4678889999999999999


Q ss_pred             HHHHHHHHH
Q 010342          474 EAYQILREM  482 (512)
Q Consensus       474 ~a~~~~~~m  482 (512)
                      +|..++++.
T Consensus       304 ~A~~~~~~~  312 (327)
T 3cv0_A          304 LVELTYAQN  312 (327)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHHHH
Confidence            999988754

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=2.4e-17  Score=147.47  Aligned_cols=281  Identities=13%  Similarity=-0.008  Sum_probs=186.2

Q ss_pred             cchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHH
Q 010342          138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE  217 (512)
Q Consensus       138 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  217 (512)
                      +...+..+...+...|++++|..+|+.+.+.... +..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            3445666777888888888888888888776433 56677888888888888888888888887754 446777888888


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHH--HHHhcCCH
Q 010342          218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN--GFCKMGRI  295 (512)
Q Consensus       218 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~  295 (512)
                      .+...|++++|.+.++.+..... .....+..+...                      .|+......+..  .+...|++
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~  154 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY  154 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence            88888888888888888876432 222222222100                      011111112212  25566777


Q ss_pred             HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 010342          296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN  375 (512)
Q Consensus       296 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  375 (512)
                      ++|...++++.+..  +.+...+..+...+...|++++|...+.+.+...  +.+...+..+...+...|++++|...++
T Consensus       155 ~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~  230 (327)
T 3cv0_A          155 RECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYN  230 (327)
T ss_dssp             HHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77777777776654  4466667777777777777777777777665443  3345667777777777777777777777


Q ss_pred             HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-----------CHHhHHHHHHHHHhcCCHHHHHHHH
Q 010342          376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-----------DNYVYAAMIKGLCRSGKIHEAVHFL  444 (512)
Q Consensus       376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~  444 (512)
                      ++.+.. +.+..++..+..+|...|++++|...++++.+.....           +..++..+..++...|++++|..++
T Consensus       231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  309 (327)
T 3cv0_A          231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY  309 (327)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            777653 4456677777777888888888888887776543111           4567777888888888888888777


Q ss_pred             HHHH
Q 010342          445 YELV  448 (512)
Q Consensus       445 ~~~~  448 (512)
                      ++..
T Consensus       310 ~~~l  313 (327)
T 3cv0_A          310 AQNV  313 (327)
T ss_dssp             TCCS
T ss_pred             HHHH
Confidence            6543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=4.7e-16  Score=146.74  Aligned_cols=400  Identities=10%  Similarity=-0.043  Sum_probs=201.2

Q ss_pred             CChHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C---CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcC
Q 010342           27 PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-----G---VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE   98 (512)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   98 (512)
                      .....||.|...+...|++++|++.|++..+.     +   .+....+|+.+..+|...|++++|...+.++.+..+...
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34567888888888889998888888876441     1   122345677788888888888888877777665444322


Q ss_pred             CC-C-cchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcch
Q 010342           99 DL-S-VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS  176 (512)
Q Consensus        99 ~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~  176 (512)
                      +. . ....++..+..++...                                 ..+++++|...|++..+..+. ++..
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~---------------------------------~~~~y~~A~~~~~kal~~~p~-~~~~  174 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKC---------------------------------GGNQNERAKVCFEKALEKKPK-NPEF  174 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHH---------------------------------CTTHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred             cccchhhHHHHHHHHHHHHHH---------------------------------ccccHHHHHHHHHHHHHhCCC-CHHH
Confidence            11 1 1122233222222221                                 123445555555554443211 2223


Q ss_pred             HHHHHHH---HhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 010342          177 YNSIVHG---LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC----GESDLEKARKVLQFMLSKKDVDRTRICNI  249 (512)
Q Consensus       177 ~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  249 (512)
                      +..+..+   +...++.++|++.+++.++.. +.+...+..+...+.    ..|++++|.+.+++.... .+.....+..
T Consensus       175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~  252 (472)
T 4g1t_A          175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRS  252 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHH
Confidence            3322222   223444455555555555432 223333333332222    234455555555555432 2223334444


Q ss_pred             HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC
Q 010342          250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG  329 (512)
Q Consensus       250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  329 (512)
                      +...+...|++++|...+....+..+. +...+..+..+|...+...         ....  ....      .......+
T Consensus       253 lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~---------~~~~--~~~~------~~~~~~~~  314 (472)
T 4g1t_A          253 AAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQV---------MNLR--ENGM------YGKRKLLE  314 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH---------HHC--------------CHHHHHH
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHh---------hhHH--HHHH------HHHHHHHh
Confidence            444555555555555555554444322 4455555555543221110         0000  0000      00011122


Q ss_pred             CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH--hHHHHHH-HHHhcCCHHHHH
Q 010342          330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST--TYAIVID-GLCESNQLDEAK  406 (512)
Q Consensus       330 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~  406 (512)
                      ..+.|...+.+.....  +.+...+..+...+...|++++|...|++..+....+...  .+..+.. .+...|+.++|.
T Consensus       315 ~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai  392 (472)
T 4g1t_A          315 LIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI  392 (472)
T ss_dssp             HHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             hHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            3567777777765444  4455678888899999999999999999998864333221  2333332 345678999999


Q ss_pred             HHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG  486 (512)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  486 (512)
                      ..+++.++..  |+......         ....+.+++++.++.+ +.+..+|..+...+...|++++|++.|++.++.|
T Consensus       393 ~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          393 HHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            9999988753  43322221         2234455666666654 4477899999999999999999999999998753


Q ss_pred             -CCCChHHH
Q 010342          487 -LNPDAVTW  494 (512)
Q Consensus       487 -~~p~~~~~  494 (512)
                       ..|+..+|
T Consensus       461 ~~~p~a~~~  469 (472)
T 4g1t_A          461 SLIPSASSW  469 (472)
T ss_dssp             ---------
T ss_pred             CCCCcHhhc
Confidence             23444444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=4e-17  Score=142.15  Aligned_cols=197  Identities=12%  Similarity=0.107  Sum_probs=113.1

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010342          277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA  356 (512)
Q Consensus       277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  356 (512)
                      |+..++..+...+...++.++|++.++++...+..+.+...+..+...+...|++++|++.+.+       +.+...+..
T Consensus        63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~  135 (291)
T 3mkr_A           63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAM  135 (291)
T ss_dssp             HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHH
T ss_pred             hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHH
Confidence            3445555566666666666666666666654331133445555555666666666666666643       345556666


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhH---HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY---AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR  433 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  433 (512)
                      ++..+.+.|++++|...++++.+..  |+....   ..++..+...|++++|..+|+++.+.. +.+...++.+..++..
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~  212 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMA  212 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            6666666666666666666666542  332211   112233334466666666666666543 4556666666666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 010342          434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE-AYQILREMRK  484 (512)
Q Consensus       434 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~  484 (512)
                      .|++++|...+++.++.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus       213 ~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          213 QGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            666666666666666553 2255566666666666666654 4566666655

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=4.1e-17  Score=142.07  Aligned_cols=83  Identities=12%  Similarity=0.061  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH-HHHH
Q 010342          365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE-AVHF  443 (512)
Q Consensus       365 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~  443 (512)
                      |++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++++.. +.+..++..++..+...|+.++ +.++
T Consensus       180 ~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             THHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            4444444444444443 13344444444444444445555554444444332 3344444444444444444433 3344


Q ss_pred             HHHHHH
Q 010342          444 LYELVD  449 (512)
Q Consensus       444 ~~~~~~  449 (512)
                      ++++.+
T Consensus       258 ~~~~~~  263 (291)
T 3mkr_A          258 LSQLKD  263 (291)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=165.47  Aligned_cols=151  Identities=13%  Similarity=0.117  Sum_probs=112.0

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLG---IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA  426 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  426 (512)
                      ...||+++|.+|++.|++++|..+|++|.+   .|+.||..|||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            345788888888888888888888877653   46788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------hHHHHHHHH
Q 010342          427 MIKGLCRSGK-IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD------AVTWRILDK  499 (512)
Q Consensus       427 l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~  499 (512)
                      +|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.    .+++.++++ .-++.|+      ..|...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            8888888877 467788888888888888888888887666553    344444444 3345554      344555666


Q ss_pred             hhccCC
Q 010342          500 LHGNRG  505 (512)
Q Consensus       500 ~~~~~g  505 (512)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            666554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.73  E-value=2.7e-17  Score=157.96  Aligned_cols=116  Identities=19%  Similarity=0.255  Sum_probs=107.5

Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHhh---cCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 010342          383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY  459 (512)
Q Consensus       383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  459 (512)
                      ..-..||++||++|++.|++++|.++|++|.   ..|..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3445689999999999999999999998875   4578999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChHHHHHHH
Q 010342          460 NVVIDGACKLSMK-REAYQILREMRKNGLNPDAVTWRILD  498 (512)
Q Consensus       460 ~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~l~  498 (512)
                      +++|.++++.|+. ++|.+++++|.+.|+.||..||++++
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll  243 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL  243 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhccccc
Confidence            9999999999985 78999999999999999999999544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.72  E-value=4.2e-15  Score=138.20  Aligned_cols=102  Identities=14%  Similarity=-0.002  Sum_probs=32.7

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCCh---hHHHHHHHhcCCCCCCCcchhHHHHH
Q 010342           70 LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV---NEVFRIAEDMPQGKSVNEEFACGHMI  146 (512)
Q Consensus        70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~  146 (512)
                      +...+.+.|++++|...+.++.+.     +   +...+..|...|...|+.   ++|...|++..+.    +...+..+.
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~-----g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg   76 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAEL-----G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLG   76 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----T---CCTGGGTCC--------------------------------CHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHH
Confidence            444555555555555555544321     1   122223344444444444   5555555554432    223333343


Q ss_pred             HHHHhcC-----ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010342          147 DSLCRSG-----RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK  186 (512)
Q Consensus       147 ~~~~~~~-----~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  186 (512)
                      ..+...+     ++++|...|+...+.|.   ...+..|...|..
T Consensus        77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~  118 (452)
T 3e4b_A           77 RLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQ  118 (452)
T ss_dssp             HHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHH
T ss_pred             HHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHh
Confidence            3233332     44455555555554431   2244444444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.71  E-value=3.4e-15  Score=138.79  Aligned_cols=378  Identities=11%  Similarity=-0.009  Sum_probs=198.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---hhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010342           35 LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV---ERANVLMFKLWERMKEEEDLSVNNAAFANLV  111 (512)
Q Consensus        35 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~  111 (512)
                      +...+.+.|++++|..+|++..+.|   ++..+..+...+...|+.   ++|...+.+..+.         +...+..|.
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---------~~~A~~~Lg   76 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---------SPRAQARLG   76 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------CHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------CHHHHHHHH
Confidence            4444555566666666666655543   233333444444444554   5555555544321         223334444


Q ss_pred             HHHHccC-----ChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhh---HHHHHHHHHHcCCCCCcchHHHHHHH
Q 010342          112 DSLCREG-----YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG---ASRVVYVMRKRGLTPSLVSYNSIVHG  183 (512)
Q Consensus       112 ~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~g~~p~~~~~~~l~~~  183 (512)
                      ..+...+     ++++|+..|++....+.   ..++..|...|...+....   +.+.+......|   ++..+..+...
T Consensus        77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~  150 (452)
T 3e4b_A           77 RLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLL  150 (452)
T ss_dssp             HHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHH
T ss_pred             HHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence            4333333     55566666666555432   1245555555555444333   344444444433   34556666666


Q ss_pred             HhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc---
Q 010342          184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES---DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI---  257 (512)
Q Consensus       184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  257 (512)
                      |...+.++++........+.-...++..+..+...|...|   +.++|.+.|++..+.+. +....+..+...|...   
T Consensus       151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~  229 (452)
T 3e4b_A          151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG  229 (452)
T ss_dssp             HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred             HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence            6666644444443322222211223336666777777777   77777777777766542 2222234445555443   


Q ss_pred             -CChhhHHHHHHHHHhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC----
Q 010342          258 -KNPTELLNVLVFMLQTQCQPDVITLNTVING-F--CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG----  329 (512)
Q Consensus       258 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----  329 (512)
                       +++++|..+|+... .   -++..+..+... +  ...+++++|...|++..+.+    +...+..+...|. .|    
T Consensus       230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~  300 (452)
T 3e4b_A          230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVP  300 (452)
T ss_dssp             SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSC
T ss_pred             CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCC
Confidence             56777777777766 2   245555666665 3  45788888888888887643    5556666666665 44    


Q ss_pred             -CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cC
Q 010342          330 -RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SN  400 (512)
Q Consensus       330 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g  400 (512)
                       ++++|..+|.+..     +-++..+..+...|..    ..++++|...|++..+.|   +......|..+|..    ..
T Consensus       301 ~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~  372 (452)
T 3e4b_A          301 ADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP  372 (452)
T ss_dssp             CCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred             CCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence             8888888887754     3355666666666655    347888888888887765   33445566666654    34


Q ss_pred             CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       401 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      +.++|...++...+.| .++.......+......++..+|..+.++..+
T Consensus       373 d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          373 DPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             CHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7788888888877665 23222222222222233455566666665544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=1.3e-15  Score=126.77  Aligned_cols=200  Identities=12%  Similarity=0.027  Sum_probs=147.8

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHH
Q 010342          276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN  355 (512)
Q Consensus       276 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  355 (512)
                      +++...+..+...+.+.|++++|+..|++..+..  +.+...+..+...+...|++++|+..+++.+...  +.+...+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~   77 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYM   77 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence            3456677777778888888888888888887765  5677778888888888888888888888766544  44556777


Q ss_pred             HHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhH
Q 010342          356 AVLRGLFRL-----------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY  424 (512)
Q Consensus       356 ~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  424 (512)
                      .+...+...           |++++|...+++..+.. |.+...+..+..++...|++++|...++++++.+  .+...+
T Consensus        78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~  154 (217)
T 2pl2_A           78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR  154 (217)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred             HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence            777777777           99999999999988864 4567788888899999999999999999988776  677888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      ..+..+|...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..
T Consensus       155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            889999999999999999999988864 3367788888899999999999998888754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.71  E-value=3.9e-14  Score=133.54  Aligned_cols=373  Identities=12%  Similarity=-0.033  Sum_probs=194.3

Q ss_pred             CCcchHhHHHHHHHHHccCChhHHHHHHHhcCCC--------CCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc---
Q 010342          100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG--------KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---  168 (512)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  168 (512)
                      .......|+.|...+...|++++|++.|++..+.        ..+....+|+.+..+|...|++++|...+++..+.   
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3344456667777777777777777776654221        01122345556666666666666666666654431   


Q ss_pred             --C-CCC-CcchHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCchhhHHHHHHH---HhccCCHHHHHHHHHHHHhCC
Q 010342          169 --G-LTP-SLVSYNSIVHGLCK--HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG---LCGESDLEKARKVLQFMLSKK  239 (512)
Q Consensus       169 --g-~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~  239 (512)
                        + ..+ ...++.....++..  .+++++|++.|+++.+.. +.++..+..+..+   +...++.++|.+.+++..+..
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence              0 011 12334433333332  335666666666665543 2233333333332   223455555555555554321


Q ss_pred             CCCCcccHHHHHHHHH----ccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH
Q 010342          240 DVDRTRICNIYLRALC----LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA  315 (512)
Q Consensus       240 ~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  315 (512)
                       +.+...+..+...+.    ..++.++|...++......+. +...+..+...|...|++++|...+++..+..  +.+.
T Consensus       206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~  281 (472)
T 4g1t_A          206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNA  281 (472)
T ss_dssp             -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCH
T ss_pred             -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChH
Confidence             222223333322222    234455555555555544322 44455555555555566666665555555443  3344


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010342          316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG  395 (512)
Q Consensus       316 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  395 (512)
                      .++..+..+|...+....+..           ......      .....+..+.|...++...+.. +.+..++..+...
T Consensus       282 ~~~~~lg~~y~~~~~~~~~~~-----------~~~~~~------~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~  343 (472)
T 4g1t_A          282 YLHCQIGCCYRAKVFQVMNLR-----------ENGMYG------KRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL  343 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-----------------C------HHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHH-----------HHHHHH------HHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence            444444443321111000000           000000      0011233677888888888754 5567788999999


Q ss_pred             HHhcCCHHHHHHHHHHhhcCCCCCCHH--hHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 010342          396 LCESNQLDEAKRFWDDIVWPSNIHDNY--VYAAMIK-GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK  472 (512)
Q Consensus       396 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  472 (512)
                      |...|++++|...|+++++....+...  .+..+.. .....|++++|+..|.+.++.  .|+.....         +..
T Consensus       344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~  412 (472)
T 4g1t_A          344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMK  412 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHH
Confidence            999999999999999998765333221  2333333 234679999999999999886  44433222         223


Q ss_pred             HHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCCC
Q 010342          473 REAYQILREMRKNGLNPDAVTWRILDKLHGNRGND  507 (512)
Q Consensus       473 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  507 (512)
                      ..+.++++.....+ +.+..+|..|..+|...|+.
T Consensus       413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~  446 (472)
T 4g1t_A          413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKM  446 (472)
T ss_dssp             HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence            44556666666543 45677888888888776654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=3.8e-15  Score=128.16  Aligned_cols=223  Identities=13%  Similarity=0.105  Sum_probs=160.8

Q ss_pred             HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCc----HHHHHHH
Q 010342          247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-APD----AVTFTTI  321 (512)
Q Consensus       247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l  321 (512)
                      +..+...+...|++++|...+....+..  .+...+..+..++...|++++|...+++..+.... .++    ...+..+
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            3334444455555555555555555544  45666777777777777777777777776653210 011    4667777


Q ss_pred             HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342          322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ  401 (512)
Q Consensus       322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  401 (512)
                      ...+...|++++|...+.+.+..   .|+.       ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence            77888888888888888776543   2332       34556677888888888888753 4455678888888889999


Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE  481 (512)
Q Consensus       402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  481 (512)
                      +++|...++++.+.. +.+..++..+..++...|++++|...+++..+.. +.+...|..+...+...|++++|.+.+++
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999888764 5567788888999999999999999999988864 33577888889999999999999999988


Q ss_pred             HHH
Q 010342          482 MRK  484 (512)
Q Consensus       482 m~~  484 (512)
                      ..+
T Consensus       233 a~~  235 (258)
T 3uq3_A          233 ART  235 (258)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=3.7e-15  Score=128.23  Aligned_cols=119  Identities=10%  Similarity=-0.021  Sum_probs=62.3

Q ss_pred             cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 010342          328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR  407 (512)
Q Consensus       328 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  407 (512)
                      .|++++|...+.+.....  +.+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|..
T Consensus       118 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  194 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIA  194 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence            344444444444433211  2223344445555555555555555555555432 3344555555666666666666666


Q ss_pred             HHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .++++++.. +.+...+..+..++...|++++|...+++..+.
T Consensus       195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            666655443 334555666666666666666666666665543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=4.2e-15  Score=123.62  Aligned_cols=194  Identities=14%  Similarity=0.029  Sum_probs=123.0

Q ss_pred             HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342          247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL  326 (512)
Q Consensus       247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (512)
                      +..+...+...|++++|...++..++..+ .+...+..+..++.+.|++++|+..+++..+..  +.+...+..+...+.
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEAYV   84 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence            33333444444444444444444443332 255666677777777777777777777776654  456666777777777


Q ss_pred             hc-----------CCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010342          327 NV-----------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG  395 (512)
Q Consensus       327 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  395 (512)
                      ..           |++++|+..+.+.+...  +.+...+..+..++...|++++|+..|++..+..  .+...+..+..+
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~  160 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence            77           88888888887766543  3345667777778888888888888888887765  667777888888


Q ss_pred             HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       396 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      |...|++++|...++++++.. +.+...+..+...+...|++++|...+++..
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            888888888888888887654 5566777788888888888888888776653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.67  E-value=3.4e-14  Score=123.21  Aligned_cols=200  Identities=9%  Similarity=-0.005  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR  359 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  359 (512)
                      .+..+..++...|++++|+..+++....... ......|..+...+...|++++|...+.+.+...  +.+...+..+..
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~  116 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGS  116 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence            4444444455555555555555554442100 0012224444455555555555555555444322  223344455555


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC---
Q 010342          360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK---  436 (512)
Q Consensus       360 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  436 (512)
                      .+...|++++|...+++..+.. +.+...+..+...+...+++++|...++++.+.. +.+...+..+..++...|+   
T Consensus       117 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~  194 (272)
T 3u4t_A          117 YFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTK  194 (272)
T ss_dssp             HHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCS
T ss_pred             HHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchh
Confidence            5555555555555555554432 3333444444422222335555555555555432 3334455555555555555   


Q ss_pred             HHHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          437 IHEAVHFLYELVDSG-VTPN------IVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       437 ~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      +++|...+++..+.. -.|+      ..+|..+...|...|++++|.+.++++.+
T Consensus       195 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  249 (272)
T 3u4t_A          195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA  249 (272)
T ss_dssp             SCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555555555554421 0122      13455566666666777777777766665

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.67  E-value=2.3e-14  Score=122.75  Aligned_cols=211  Identities=13%  Similarity=0.043  Sum_probs=155.1

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342          279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL  358 (512)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  358 (512)
                      ...+..+...+...|++++|...|+++....  +.+...+..+...+...|++++|.+.+.+.+...  +.+...+..+.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la  112 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYG  112 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHH
Confidence            4456667777777788888888887777654  4566777777777888888888888887765443  33566677777


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010342          359 RGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI  437 (512)
Q Consensus       359 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  437 (512)
                      ..+...|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus       113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence            77888888888888888877632233 45567777888888888888888888887654 44667788888888888888


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342          438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL  497 (512)
Q Consensus       438 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  497 (512)
                      ++|...++++.+.. +.+...+..+...+...|++++|.++++++.+.  .|+...+..+
T Consensus       192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~  248 (252)
T 2ho1_A          192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF  248 (252)
T ss_dssp             HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred             HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence            88888888887754 345667778888888888888888888888773  4555544433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.67  E-value=4.5e-14  Score=118.54  Aligned_cols=213  Identities=9%  Similarity=-0.025  Sum_probs=170.3

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV  357 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  357 (512)
                      +...+..+...+...|++++|...++++.+..  +.+...+..+...+...|++++|...+.+.+...  +.+...+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l   82 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHH
Confidence            45667778888888899999999998888765  5567788888888899999999999988876543  4456778888


Q ss_pred             HHHHHcc-CCHHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010342          358 LRGLFRL-RRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG  435 (512)
Q Consensus       358 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  435 (512)
                      ...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence            8888899 99999999999988732223 35678888889999999999999999988754 456778888999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342          436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL  497 (512)
Q Consensus       436 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  497 (512)
                      ++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+  ..|+......+
T Consensus       162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~  221 (225)
T 2vq2_A          162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTV  221 (225)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            9999999999988865324677788888888899999999999999876  35665554444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.67  E-value=4.4e-14  Score=122.52  Aligned_cols=244  Identities=9%  Similarity=-0.006  Sum_probs=156.9

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhc
Q 010342          215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP--DVITLNTVINGFCKM  292 (512)
Q Consensus       215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~  292 (512)
                      ....+...|++++|...++.+.+. .+.+...+..+...+...|++++|...+....+....+  ....|..+..++...
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~   87 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKLEAK-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK   87 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHT-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence            334444444444444444444432 12223344444444444455555555544444422111  223477788888888


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010342          293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE  372 (512)
Q Consensus       293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  372 (512)
                      |++++|+..|++..+..  +.+...+..+...+...|++++|...+.+.+...  +.+...+..+...+...+++++|..
T Consensus        88 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             TCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888765  4566788888888889999999999888866442  3445566666624444569999999


Q ss_pred             HHHHHHhCCCCCChHhHHHHHHHHHhcCC---HHHHHHHHHHhhcCC-CCCC------HHhHHHHHHHHHhcCCHHHHHH
Q 010342          373 VFNCMLGIGVVADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPS-NIHD------NYVYAAMIKGLCRSGKIHEAVH  442 (512)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~  442 (512)
                      .|+++.+.. +.+...+..+..++...|+   +++|...++++.+.. ..|+      ..++..+...|...|++++|.+
T Consensus       164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  242 (272)
T 3u4t_A          164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA  242 (272)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999888854 4456677778888888887   777888888776431 0122      2577788889999999999999


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHH
Q 010342          443 FLYELVDSGVTPNIVCYNVVIDG  465 (512)
Q Consensus       443 ~~~~~~~~~~~p~~~~~~~l~~~  465 (512)
                      .+++..+.. +-+...+..+...
T Consensus       243 ~~~~al~~~-p~~~~a~~~l~~~  264 (272)
T 3u4t_A          243 AWKNILALD-PTNKKAIDGLKMK  264 (272)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHC--
T ss_pred             HHHHHHhcC-ccHHHHHHHhhhh
Confidence            999998864 2244444444333

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.66  E-value=8e-15  Score=124.83  Aligned_cols=213  Identities=15%  Similarity=0.139  Sum_probs=159.9

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010342          277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA  356 (512)
Q Consensus       277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  356 (512)
                      .....+..+...+...|++++|...|+++.+..  +.+...+..+...+...|++++|...+.+.+...  +.+...+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~   96 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYG   96 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHH
Confidence            355667778888888999999999999988765  5678888888999999999999999998876553  446677888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK  436 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  436 (512)
                      +...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus        97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A           97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM  174 (243)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence            8889999999999999999998864 5577788889999999999999999999988764 5577788999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 010342          437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILD  498 (512)
Q Consensus       437 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~  498 (512)
                      +++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.  .|+ ...+..+.
T Consensus       175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~  234 (243)
T 2q7f_A          175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAKK  234 (243)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHHH
Confidence            999999999998864 336778899999999999999999999999874  454 44444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.65  E-value=5.7e-12  Score=121.02  Aligned_cols=236  Identities=10%  Similarity=-0.011  Sum_probs=173.2

Q ss_pred             hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010342          262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL-KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ  340 (512)
Q Consensus       262 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  340 (512)
                      .+..+|++.+...+ -....|...+..+...|+.++|. .+|++.....  +.+...|...+...-..|+++.|.++|++
T Consensus       327 Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          327 RMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            35567777776643 36778888888888889888896 9999988643  56677777888888889999999999988


Q ss_pred             hcccC--------CCCCC------------hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc-
Q 010342          341 VMPQR--------GYSPG------------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-  399 (512)
Q Consensus       341 ~~~~~--------~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  399 (512)
                      .+...        ...|+            ...|...+....+.|+.+.|..+|....+.-.......|...+..-.+. 
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence            76431        00131            2357777777778899999999999998751122334444333333344 


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 010342          400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKREAYQ  477 (512)
Q Consensus       400 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~  477 (512)
                      ++.+.|..+|+..++. .+.+...|...+......|+.+.|..+|++.+.....+  ....|...+..-.+.|+.+.+.+
T Consensus       484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4589999999999876 35667777888888888999999999999998864322  34678888888888999999999


Q ss_pred             HHHHHHHCCCCCChHHHHHHHHhhcc
Q 010342          478 ILREMRKNGLNPDAVTWRILDKLHGN  503 (512)
Q Consensus       478 ~~~~m~~~~~~p~~~~~~~l~~~~~~  503 (512)
                      +.+++.+.  .|+......+.+-|.-
T Consensus       563 v~~R~~~~--~P~~~~~~~f~~ry~~  586 (679)
T 4e6h_A          563 LEKRFFEK--FPEVNKLEEFTNKYKV  586 (679)
T ss_dssp             HHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred             HHHHHHHh--CCCCcHHHHHHHHhcC
Confidence            99999884  4665566666655543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.64  E-value=1.9e-13  Score=116.97  Aligned_cols=195  Identities=13%  Similarity=0.011  Sum_probs=146.4

Q ss_pred             HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342          251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR  330 (512)
Q Consensus       251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (512)
                      ...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..  +.+...+..+...+...|+
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~  120 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGFLYEQKR  120 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHHhH
Confidence            333444444444444444444432 2256677778888888888888888888887665  4567778888888888888


Q ss_pred             HHHHHHHHHhhcccCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 010342          331 IQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW  409 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  409 (512)
                      +++|.+.+.+.+. .+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...+
T Consensus       121 ~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~  198 (252)
T 2ho1_A          121 YEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY  198 (252)
T ss_dssp             HHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888765 22233 45667778888888999999999998888754 446778888888999999999999999


Q ss_pred             HHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       410 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      +++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus       199 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          199 DLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            9988654 5667778888888899999999999999988763

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.64  E-value=6.1e-14  Score=126.14  Aligned_cols=238  Identities=8%  Similarity=0.085  Sum_probs=171.6

Q ss_pred             HHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCH
Q 010342          253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR-IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI  331 (512)
Q Consensus       253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  331 (512)
                      .+...|++++|+..++..++..+ -+...|..+..++...|+ +++|+..|++.....  +.+...|..+..++...|++
T Consensus       106 ~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~~~~~g~~  182 (382)
T 2h6f_A          106 VLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWLRDP  182 (382)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHccCH
Confidence            33334444444444444444332 256777788888888886 888888888888766  56778888888888888888


Q ss_pred             HHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh-cCCHHHH-----
Q 010342          332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEA-----  405 (512)
Q Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----  405 (512)
                      ++|+..|.+++...  +-+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..++|     
T Consensus       183 ~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~e  259 (382)
T 2h6f_A          183 SQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE  259 (382)
T ss_dssp             TTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence            88888888877554  4566778888888888888888888888888864 5567788888888888 5555666     


Q ss_pred             HHHHHHhhcCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---------CHHH
Q 010342          406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSG--KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS---------MKRE  474 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~  474 (512)
                      ...+++++... +.+...|..+...+...|  ++++|.+.+.++ +.. +.+...+..+...|.+.|         ..++
T Consensus       260 l~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~  336 (382)
T 2h6f_A          260 VQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNK  336 (382)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            47788877654 556778888888888877  688888888887 432 335677888888888764         2588


Q ss_pred             HHHHHHHH-HHCCCCCCh-HHHHHHHHhh
Q 010342          475 AYQILREM-RKNGLNPDA-VTWRILDKLH  501 (512)
Q Consensus       475 a~~~~~~m-~~~~~~p~~-~~~~~l~~~~  501 (512)
                      |.++++++ .+  +.|.. ..|..+...+
T Consensus       337 A~~~~~~l~~~--~DP~r~~~w~~~~~~l  363 (382)
T 2h6f_A          337 ALELCEILAKE--KDTIRKEYWRYIGRSL  363 (382)
T ss_dssp             HHHHHHHHHHT--TCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCchhHHHHHHHHHHH
Confidence            99999988 55  45543 4555555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.61  E-value=2e-13  Score=114.60  Aligned_cols=195  Identities=9%  Similarity=-0.038  Sum_probs=139.7

Q ss_pred             HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc-
Q 010342          250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-  328 (512)
Q Consensus       250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  328 (512)
                      +...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...+++.....  +.+...+..+...+... 
T Consensus        14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~   90 (225)
T 2vq2_A           14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWFLCGRL   90 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhc
Confidence            3333444444444444444443332 2245677777778888888888888888877654  45677777888888888 


Q ss_pred             CCHHHHHHHHHhhcccCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 010342          329 GRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR  407 (512)
Q Consensus       329 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  407 (512)
                      |++++|...+.+.+. .+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..
T Consensus        91 ~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  168 (225)
T 2vq2_A           91 NRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY  168 (225)
T ss_dssp             CCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence            888888888888765 22223 35667777888888888888888888887753 4456778888888888899999998


Q ss_pred             HHHHhhcCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          408 FWDDIVWPSNI-HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       408 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .++++.+.. + .+...+..+...+...|+.++|..+++.+.+.
T Consensus       169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          169 YFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            888887654 3 56667777777888888888888888888764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=4.2e-14  Score=122.87  Aligned_cols=249  Identities=11%  Similarity=-0.073  Sum_probs=150.0

Q ss_pred             HhccCchhHHHHHHHHHHhCCC---CCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh
Q 010342          184 LCKHGGCMRAYQLLEEGIQFGY---LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP  260 (512)
Q Consensus       184 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  260 (512)
                      ....|++++|++.++++.+...   +.+..++..+...+...|++++|...|+++....                     
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------------   73 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---------------------   73 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---------------------
Confidence            3456677777777777776421   1134566666677777777777777777665431                     


Q ss_pred             hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010342          261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ  340 (512)
Q Consensus       261 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  340 (512)
                                     +.+...+..+..++...|++++|...|++.....  +.+...+..+...+...|++++|...+.+
T Consensus        74 ---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~  136 (275)
T 1xnf_A           74 ---------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLA  136 (275)
T ss_dssp             ---------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                           1245566666666666777777777777666544  34556666666677777777777777766


Q ss_pred             hcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC--
Q 010342          341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI--  418 (512)
Q Consensus       341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--  418 (512)
                      .+..   .|+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...+++.......  
T Consensus       137 a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  211 (275)
T 1xnf_A          137 FYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLA  211 (275)
T ss_dssp             HHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccc
Confidence            5543   2333333333344455677777777776666542 3333333 3556666667777777777777543211  


Q ss_pred             -CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010342          419 -HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL  479 (512)
Q Consensus       419 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  479 (512)
                       .+..++..+...|...|++++|...|++..+..  |+.  +.....++...|++++|.+-+
T Consensus       212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence             114567777788888888888888888877653  322  233355666677777776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.61  E-value=1.2e-12  Score=113.44  Aligned_cols=219  Identities=10%  Similarity=-0.090  Sum_probs=160.5

Q ss_pred             HHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Q 010342          248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF  323 (512)
Q Consensus       248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  323 (512)
                      ..+...+...+++++|...|+...+.   .+...+..+...|..    .+++++|...|++..+.+    +...+..+..
T Consensus        10 ~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~   82 (273)
T 1ouv_A           10 VGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLLGN   82 (273)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHHHH
Confidence            33344444444444444444444442   234556667777777    788888888888877643    5666777777


Q ss_pred             HHhh----cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010342          324 GLLN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG  395 (512)
Q Consensus       324 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  395 (512)
                      .+..    .+++++|+..|.+....    .+...+..+...|..    .+++++|...|++..+.+   +...+..+...
T Consensus        83 ~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  155 (273)
T 1ouv_A           83 LYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence            7777    88888888888776643    256677777777877    888888888888888765   55667777778


Q ss_pred             HHh----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          396 LCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       396 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      |..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+...|.
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~  229 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY  229 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence            877    888999999998887654   45677778888888    889999999998888865   3567778888888


Q ss_pred             h----cCCHHHHHHHHHHHHHCC
Q 010342          468 K----LSMKREAYQILREMRKNG  486 (512)
Q Consensus       468 ~----~g~~~~a~~~~~~m~~~~  486 (512)
                      .    .+++++|.+.+++..+.|
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cCCCcccCHHHHHHHHHHHHHcC
Confidence            8    889999999999988865

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.60  E-value=5.9e-14  Score=119.42  Aligned_cols=198  Identities=11%  Similarity=0.034  Sum_probs=133.8

Q ss_pred             HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342          247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL  326 (512)
Q Consensus       247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (512)
                      +..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..  +.+...+..+...+.
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYV  102 (243)
T ss_dssp             ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHH
Confidence            3333444444444444444444444432 2256667777777777888888888888777654  456677777777888


Q ss_pred             hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH
Q 010342          327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK  406 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  406 (512)
                      ..|++++|...+.+.+...  +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus       103 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence            8888888888887765443  3456667777778888888888888888877753 446677788888888888888888


Q ss_pred             HHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      ..++++.+.. +.+..++..+..++...|++++|.+.++++.+..
T Consensus       180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            8888887654 4567778888888888888888888888887764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.60  E-value=1.7e-13  Score=123.31  Aligned_cols=215  Identities=9%  Similarity=0.099  Sum_probs=99.7

Q ss_pred             hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 010342          176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD-LEKARKVLQFMLSKKDVDRTRICNIYLRAL  254 (512)
Q Consensus       176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  254 (512)
                      .|..+...+...|++++|++.++++++.. +-+...|..+..++...|+ +++|...|+++... .+.+...|..+..++
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-QPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            34444455555555555555555555433 2344455555555555553 55555555555532 222233333344444


Q ss_pred             HccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhh-cCCHHH
Q 010342          255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN-VGRIQE  333 (512)
Q Consensus       255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~  333 (512)
                      ...|++++|+..++.+++..+. +...|..+..++.+.|++++|+..++++.+..  +.+...|+.+..++.. .|..++
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchH
Confidence            4444444444444444443322 44555555555555555555555555555544  3445555555555555 333244


Q ss_pred             H-----HHHHHhhcccCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 010342          334 A-----LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES  399 (512)
Q Consensus       334 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  399 (512)
                      |     +..+.+.+...  +-+...|..+...+...|  ++++|...+.++ +. .+.+...+..+..+|.+.
T Consensus       254 A~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~  322 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM  322 (382)
T ss_dssp             HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence            4     24444433322  223334444444444444  344555544444 21 133334444444444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.59  E-value=4.7e-11  Score=114.73  Aligned_cols=443  Identities=8%  Similarity=0.025  Sum_probs=274.6

Q ss_pred             HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hhhHHHHHH
Q 010342           12 EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD---VERANVLMF   88 (512)
Q Consensus        12 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~   88 (512)
                      +.+..|++.+..++ -|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++   .+.+..+++
T Consensus        50 d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe  127 (679)
T 4e6h_A           50 DVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA  127 (679)
T ss_dssp             CHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence            34555666555544 37778888888887778888888888888765 24455667777777777777   777777766


Q ss_pred             HHHHHhhhcCCCCcchHhHHHHHHHHHccCCh--------hHHHHHHHhcCC-CCC-CC-cchhHHHHHHHHH-------
Q 010342           89 KLWERMKEEEDLSVNNAAFANLVDSLCREGYV--------NEVFRIAEDMPQ-GKS-VN-EEFACGHMIDSLC-------  150 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~-------  150 (512)
                      +.+...+    ..|+...|...+....+.++.        +.+.++|+.... -|. .+ ....|...+....       
T Consensus       128 Ral~~~~----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~  203 (679)
T 4e6h_A          128 RCLSKEL----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK  203 (679)
T ss_dssp             HHTCSSS----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred             HHHHhcC----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence            6655432    134555666665555443332        334466665332 122 23 2346666655433       


Q ss_pred             --hcCChhhHHHHHHHHHHcCCCCCcchHH---HHHHHHh----------ccCchhHHHHHHHHHHhC--CC----C---
Q 010342          151 --RSGRNHGASRVVYVMRKRGLTPSLVSYN---SIVHGLC----------KHGGCMRAYQLLEEGIQF--GY----L---  206 (512)
Q Consensus       151 --~~~~~~~a~~~~~~~~~~g~~p~~~~~~---~l~~~~~----------~~~~~~~a~~~~~~~~~~--~~----~---  206 (512)
                        ..++.+.+..+|+.........-..+|.   .+.....          ...+++.|...+.++...  ++    +   
T Consensus       204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~  283 (679)
T 4e6h_A          204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL  283 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred             HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence              2334667777777776431111112221   1111110          011233344444443211  11    1   


Q ss_pred             --------C--c------hhhHHHHHHHHhccC-------CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhH
Q 010342          207 --------P--S------EHTYKVLVEGLCGES-------DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL  263 (512)
Q Consensus       207 --------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  263 (512)
                              |  +      ...|...+..--..+       ..+.+..+|++.... .+....+|..++..+...|+.++|
T Consensus       284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a  362 (679)
T 4e6h_A          284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTV  362 (679)
T ss_dssp             TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred             ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHH
Confidence                    1  0      134444444333322       123456678887753 555777888888888889999999


Q ss_pred             H-HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--------CCC------------cHHHHHHHH
Q 010342          264 L-NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF--------CAP------------DAVTFTTII  322 (512)
Q Consensus       264 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~------------~~~~~~~l~  322 (512)
                      . .+|....... +.+...|...+....+.|+++.|..+|+.+.....        ..|            ....|...+
T Consensus       363 ~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~  441 (679)
T 4e6h_A          363 ITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM  441 (679)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence            7 9999988753 34666677788888899999999999999875310        012            234677778


Q ss_pred             HHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342          323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL-RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ  401 (512)
Q Consensus       323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  401 (512)
                      ....+.|..+.|..+|.+.++..+ .+....|...+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+
T Consensus       442 ~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~  519 (679)
T 4e6h_A          442 NTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE  519 (679)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence            888888999999999999775411 11233343333333344 4589999999999886 45566677788888888999


Q ss_pred             HHHHHHHHHHhhcCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          402 LDEAKRFWDDIVWPSNI--HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       402 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      .+.|..+|++.+.....  .....|...+..-.+.|+.+.+.++.+++.+.-  |+......++.-|
T Consensus       520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry  584 (679)
T 4e6h_A          520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence            99999999999876432  244578888888888999999999999999863  4433443443333

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.59  E-value=1.9e-13  Score=118.70  Aligned_cols=224  Identities=10%  Similarity=-0.047  Sum_probs=177.3

Q ss_pred             cCChhhHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHH
Q 010342          257 IKNPTELLNVLVFMLQTQC---QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE  333 (512)
Q Consensus       257 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  333 (512)
                      .+++++|+..++.+.+...   +.+...+..+...+...|++++|...|+++....  +.+...+..+...+...|++++
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHHH
Confidence            4556666666666665432   1246678889999999999999999999998875  5678899999999999999999


Q ss_pred             HHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       334 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      |...+.+.+...  +.+...+..+...+...|++++|...++++.+.  .|+.......+..+...|++++|...+++..
T Consensus        96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999987654  445778899999999999999999999999985  3454444555556677899999999998887


Q ss_pred             cCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010342          414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP---NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD  490 (512)
Q Consensus       414 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~  490 (512)
                      ... +++...+ .++..+...++.++|...+.+..+.....   +...+..+...+.+.|++++|...++++.+.  .|+
T Consensus       172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~  247 (275)
T 1xnf_A          172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH  247 (275)
T ss_dssp             HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred             hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence            653 4444444 47777888889999999999887653211   2577889999999999999999999999974  453

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.58  E-value=3.2e-12  Score=110.70  Aligned_cols=223  Identities=9%  Similarity=-0.053  Sum_probs=141.7

Q ss_pred             cchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 010342          174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRICNI  249 (512)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~  249 (512)
                      ..++..+...+...|++++|.+.|++..+   +.+...+..+...+..    .+++++|...|++..             
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-------------   69 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-------------   69 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-------------
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-------------
Confidence            34445555555555555555555555554   2233344444455555    555555555555544             


Q ss_pred             HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342          250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL  325 (512)
Q Consensus       250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  325 (512)
                                            +.+   +...+..+...|..    .+++++|+..|++..+.    .+...+..+...|
T Consensus        70 ----------------------~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~  120 (273)
T 1ouv_A           70 ----------------------DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIY  120 (273)
T ss_dssp             ----------------------HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred             ----------------------HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHH
Confidence                                  433   45556666666666    67777777777777654    2556666666667


Q ss_pred             hh----cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 010342          326 LN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC  397 (512)
Q Consensus       326 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  397 (512)
                      ..    .+++++|+..|.+.+...    +...+..+...|..    .+++++|...|++..+.+   +...+..+...|.
T Consensus       121 ~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~  193 (273)
T 1ouv_A          121 HDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH  193 (273)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence            66    777777777777655322    44555666666666    777788888877777653   4566677777777


Q ss_pred             h----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 010342          398 E----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       398 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  451 (512)
                      .    .+++++|...+++..+.+   +...+..+...|..    .+++++|.+.|++..+.+
T Consensus       194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            7    788888888888777654   25566777777777    778888888888777764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.56  E-value=4.7e-12  Score=111.58  Aligned_cols=217  Identities=7%  Similarity=-0.017  Sum_probs=152.0

Q ss_pred             hhHHHHHHHHHhcCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhC-CCCCCcHHHHHHHHHHH
Q 010342          261 TELLNVLVFMLQTQCQPDVITLNTVINGFC-------KMGRI-------EEALKVLNDMVAG-KFCAPDAVTFTTIIFGL  325 (512)
Q Consensus       261 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~  325 (512)
                      ++|...|++.+... +.++..|..++..+.       +.|++       ++|..+|++.... .  +.+...|..++..+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence            45555666665543 225566666666554       34664       7888888888763 3  45666788888888


Q ss_pred             hhcCCHHHHHHHHHhhcccCCCCCC-hh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH-hcCCH
Q 010342          326 LNVGRIQEALNLLYQVMPQRGYSPG-IV-TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQL  402 (512)
Q Consensus       326 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~  402 (512)
                      ...|++++|..+|++.+..   .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++
T Consensus       110 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~  185 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCH
T ss_pred             HhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCH
Confidence            8888888888888887643   343 33 67777777888888888888888888754 344445544433322 36888


Q ss_pred             HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHH
Q 010342          403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTP--NIVCYNVVIDGACKLSMKREAYQIL  479 (512)
Q Consensus       403 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~  479 (512)
                      ++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++.++.. +.|  ....|..++....+.|+.++|..++
T Consensus       186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~  264 (308)
T 2ond_A          186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE  264 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888888887653 4567778888888888888888888888888753 344  3557777888888888888888888


Q ss_pred             HHHHHC
Q 010342          480 REMRKN  485 (512)
Q Consensus       480 ~~m~~~  485 (512)
                      +++.+.
T Consensus       265 ~~a~~~  270 (308)
T 2ond_A          265 KRRFTA  270 (308)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888763

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.55  E-value=8.5e-14  Score=128.45  Aligned_cols=209  Identities=15%  Similarity=0.092  Sum_probs=131.2

Q ss_pred             CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCc
Q 010342           27 PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV  102 (512)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  102 (512)
                      +....+......+...|++++|...|++..+.+ +.+    ..++..+...+...|++++|...+.+.+.......+...
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            345566777777888888888888888887753 122    245667777888888888888888777766554433333


Q ss_pred             chHhHHHHHHHHHccCChhHHHHHHHhcCCCCC-----CCcchhHHHHHHHHHhcCC--------------------hhh
Q 010342          103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-----VNEEFACGHMIDSLCRSGR--------------------NHG  157 (512)
Q Consensus       103 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~  157 (512)
                      ...++..+...+...|++++|...+++......     .....++..+...+...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            355667777777788888888777766543211     0112356666667777777                    777


Q ss_pred             HHHHHHHHHHc----CCCC-CcchHHHHHHHHhccCchhHHHHHHHHHHhCCC-CC----chhhHHHHHHHHhccCCHHH
Q 010342          158 ASRVVYVMRKR----GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY-LP----SEHTYKVLVEGLCGESDLEK  227 (512)
Q Consensus       158 a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~  227 (512)
                      |...++.....    +..| ...++..+...+...|++++|...+++..+... .+    ...++..+...+...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            77766654431    1111 123566666777777777777777776654310 01    12356666667777777777


Q ss_pred             HHHHHHHHH
Q 010342          228 ARKVLQFML  236 (512)
Q Consensus       228 a~~~~~~~~  236 (512)
                      |...+++..
T Consensus       246 A~~~~~~al  254 (406)
T 3sf4_A          246 ASEYYKKTL  254 (406)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=1.1e-12  Score=106.22  Aligned_cols=171  Identities=10%  Similarity=0.036  Sum_probs=100.7

Q ss_pred             cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 010342          314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI  393 (512)
Q Consensus       314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  393 (512)
                      +...|..+...+...|++++|++.|++.++..  +-+...+..+..++.+.|++++|...+....... +.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence            34455555555555566666666555554433  3344455555555666666666666666655542 33444555555


Q ss_pred             HHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010342          394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR  473 (512)
Q Consensus       394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  473 (512)
                      ..+...++++.|...+.+..... +.+...+..+..++...|++++|++.|++..+.. +.+...|..+..++.+.|+++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence            66666666666666666665443 4455566666666666677777777666666653 224556666666677777777


Q ss_pred             HHHHHHHHHHHCCCCCCh
Q 010342          474 EAYQILREMRKNGLNPDA  491 (512)
Q Consensus       474 ~a~~~~~~m~~~~~~p~~  491 (512)
                      +|.+.+++..+  +.|+.
T Consensus       159 ~A~~~~~~al~--~~p~~  174 (184)
T 3vtx_A          159 EAVKYFKKALE--KEEKK  174 (184)
T ss_dssp             HHHHHHHHHHH--TTHHH
T ss_pred             HHHHHHHHHHh--CCccC
Confidence            77777776665  34543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.54  E-value=1.1e-13  Score=127.61  Aligned_cols=304  Identities=13%  Similarity=0.089  Sum_probs=193.4

Q ss_pred             CCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccH
Q 010342          172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS----EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC  247 (512)
Q Consensus       172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  247 (512)
                      +....+......+...|++++|...|+++.+.. +.+    ...+..+...+...|+++.|...+++......       
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------   78 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR-------   78 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-------
Confidence            344556667777778888888888888877753 222    24666777777788888888887777643100       


Q ss_pred             HHHHHHHHccCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----CCCcHHHHHHHH
Q 010342          248 NIYLRALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----CAPDAVTFTTII  322 (512)
Q Consensus       248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~  322 (512)
                                              ..+. +.....+..+...+...|++++|...+++......    ......++..+.
T Consensus        79 ------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  134 (406)
T 3sf4_A           79 ------------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG  134 (406)
T ss_dssp             ------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ------------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence                                    0000 01233455666667777777777777666553210    011134566667


Q ss_pred             HHHhhcCC--------------------HHHHHHHHHhhcccC---CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 010342          323 FGLLNVGR--------------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCML  378 (512)
Q Consensus       323 ~~~~~~~~--------------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  378 (512)
                      ..+...|+                    +++|...+.+.+...   +. +....++..+...+...|++++|...+++..
T Consensus       135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  214 (406)
T 3sf4_A          135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL  214 (406)
T ss_dssp             HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred             HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            77777777                    777777776654321   11 1123456677778888888888888888876


Q ss_pred             hCCC-CCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC----CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          379 GIGV-VAD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPS----NIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       379 ~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      +... .++    ..++..+...|...|++++|...+++.....    ..+ ...++..+...|...|++++|...+++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  294 (406)
T 3sf4_A          215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  294 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            5210 111    2367778888888999999998888876321    111 14567788888899999999999988876


Q ss_pred             HC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHhhccCCCC
Q 010342          449 DS----GVTP-NIVCYNVVIDGACKLSMKREAYQILREMRKN----GLNPD-AVTWRILDKLHGNRGND  507 (512)
Q Consensus       449 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~  507 (512)
                      +.    +-.+ ...++..+...+...|++++|.+.+++..+.    +-.+. ..++..+..++...|+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            53    1111 1456778888889999999999998887532    22222 34556666676666544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.54  E-value=6.9e-14  Score=129.32  Aligned_cols=278  Identities=12%  Similarity=0.061  Sum_probs=183.0

Q ss_pred             chHHHHHHHHhccCchhHHHHHHHHHHhCCCCCch----hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 010342          175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE----HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY  250 (512)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  250 (512)
                      ..+..+...+...|++++|...|+++.+.. +.+.    ..+..+...+...|++++|...+++......          
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------  117 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK----------  117 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------
Confidence            344556666777788888888888777653 2222    3566677777777777777777776653200          


Q ss_pred             HHHHHccCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCCcHHHHHHHHHHH
Q 010342          251 LRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK----FCAPDAVTFTTIIFGL  325 (512)
Q Consensus       251 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~  325 (512)
                                           ..+ .+.....+..+...|...|++++|...+++.....    ..+....++..+...+
T Consensus       118 ---------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  176 (411)
T 4a1s_A          118 ---------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY  176 (411)
T ss_dssp             ---------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ---------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence                                 000 01123455666667777777777777776655421    0022344666677777


Q ss_pred             hhcCC-----------------HHHHHHHHHhhcccC---CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-
Q 010342          326 LNVGR-----------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-  383 (512)
Q Consensus       326 ~~~~~-----------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-  383 (512)
                      ...|+                 +++|...+.+.+...   +. ......+..+...+...|++++|...+++..+.... 
T Consensus       177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  256 (411)
T 4a1s_A          177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF  256 (411)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence            77777                 777777776654321   11 112346677778888889999998888887663110 


Q ss_pred             CC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 010342          384 AD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-----IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG---  451 (512)
Q Consensus       384 ~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---  451 (512)
                      ++    ..++..+..+|...|++++|...+++......     .....++..+...+...|++++|...+++..+..   
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            11    22677888889999999999999888764211     0124577888889999999999999998877531   


Q ss_pred             -C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          452 -V-TPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       452 -~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                       . .....++..+...+...|++++|.+.+++..+
T Consensus       337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             1 11234677888899999999999999998876

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.52  E-value=2e-12  Score=104.59  Aligned_cols=167  Identities=10%  Similarity=0.107  Sum_probs=142.0

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV  357 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  357 (512)
                      ++..|..+...|.+.|++++|+..|++..+..  +.+...+..+..++...|++++|...+.+.....  +.+...+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence            56788889999999999999999999988776  6678888899999999999999999988866544  4455667777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010342          358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI  437 (512)
Q Consensus       358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  437 (512)
                      ...+...++++.+...+.+..+.. +.+...+..+..+|...|++++|.+.++++++.. +.+..++..+..+|.+.|++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence            788888999999999999988764 5567788889999999999999999999998765 56778899999999999999


Q ss_pred             HHHHHHHHHHHHC
Q 010342          438 HEAVHFLYELVDS  450 (512)
Q Consensus       438 ~~a~~~~~~~~~~  450 (512)
                      ++|.+.|++.++.
T Consensus       158 ~~A~~~~~~al~~  170 (184)
T 3vtx_A          158 DEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998875

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.52  E-value=1.4e-13  Score=127.17  Aligned_cols=282  Identities=14%  Similarity=0.029  Sum_probs=173.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010342           30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA  105 (512)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  105 (512)
                      ..+..+...+...|++++|+..|+++.+.+ +.+.    ..|..+...+...|++++|...+.+.++......+......
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            345667778899999999999999998863 2233    46778888999999999999999998877655544444556


Q ss_pred             hHHHHHHHHHccCChhHHHHHHHhcCCCC-----CCCcchhHHHHHHHHHhcCC-----------------hhhHHHHHH
Q 010342          106 AFANLVDSLCREGYVNEVFRIAEDMPQGK-----SVNEEFACGHMIDSLCRSGR-----------------NHGASRVVY  163 (512)
Q Consensus       106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~  163 (512)
                      .+..+...+...|++++|...+++.....     ......++..+...+...|+                 +++|...++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            77888888888999999888887754321     11223456667777777777                 777777766


Q ss_pred             HHHHc----CCCC-CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCC-Cc----hhhHHHHHHHHhccCCHHHHHHHHH
Q 010342          164 VMRKR----GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-PS----EHTYKVLVEGLCGESDLEKARKVLQ  233 (512)
Q Consensus       164 ~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~  233 (512)
                      +..+.    +..| ...++..+...+...|++++|.+.+++..+.... ++    ..++..+...+...|++++|...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            65431    1111 1235666666777777777777777766543100 01    1255666666666777777766666


Q ss_pred             HHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---
Q 010342          234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF---  310 (512)
Q Consensus       234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---  310 (512)
                      +..........                              .......+..+...+...|++++|...+++......   
T Consensus       288 ~al~~~~~~~~------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          288 RTLALAVELGE------------------------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             HHHHHHHHTTC------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCC------------------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            65432100000                              000133445555556666666666666655543210   


Q ss_pred             -CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhc
Q 010342          311 -CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM  342 (512)
Q Consensus       311 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  342 (512)
                       ......++..+...+...|++++|...+.+.+
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence             01123345555666666666666666665544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.52  E-value=1.3e-13  Score=123.53  Aligned_cols=277  Identities=12%  Similarity=0.081  Sum_probs=185.6

Q ss_pred             hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 010342          176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS----EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL  251 (512)
Q Consensus       176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  251 (512)
                      .+......+...|++++|...++++.+.. +.+    ...+..+...+...|++++|.+.+++.....            
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------   73 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------   73 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence            44455666677788888888887777653 222    2456667777777777777777777654310            


Q ss_pred             HHHHccCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----cHHHHHHHHHHHh
Q 010342          252 RALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP----DAVTFTTIIFGLL  326 (512)
Q Consensus       252 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~  326 (512)
                                         ...+. +.....+..+...+...|++++|...+++..+.....+    ...++..+...+.
T Consensus        74 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  134 (338)
T 3ro2_A           74 -------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH  134 (338)
T ss_dssp             -------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence                               00000 11234566677777777888888877777654211011    1336667777777


Q ss_pred             hcCC--------------------HHHHHHHHHhhcccCC----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 010342          327 NVGR--------------------IQEALNLLYQVMPQRG----YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV  382 (512)
Q Consensus       327 ~~~~--------------------~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  382 (512)
                      ..|+                    +++|...+.+.+....    .+.....+..+...+...|++++|...+++..+...
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7777                    7888777766543211    111234677778888889999999999988865310


Q ss_pred             -CC----ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC----CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 010342          383 -VA----DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS----NIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS--  450 (512)
Q Consensus       383 -~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--  450 (512)
                       .+    ...++..+...+...|++++|...+++.....    ..+ ...++..+...+...|++++|...+++..+.  
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence             01    12367888889999999999999999876421    111 1457788889999999999999999988753  


Q ss_pred             --CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          451 --GV-TPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       451 --~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                        +- .....++..+...+.+.|++++|.+.+++..+
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence              11 11244677889999999999999999999876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.51  E-value=1.6e-12  Score=118.65  Aligned_cols=229  Identities=7%  Similarity=-0.059  Sum_probs=152.9

Q ss_pred             HHHccCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----CCcHHHHHHHH
Q 010342          253 ALCLIKNPTELLNVLVFMLQT----QCQP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-----APDAVTFTTII  322 (512)
Q Consensus       253 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~  322 (512)
                      .+...|++++|...+....+.    +..+ ...++..+...|...|+++.|...+++..+....     +....++..+.
T Consensus       112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  191 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA  191 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            334444555555444444432    1011 2346677777888888888888888776642110     12245677778


Q ss_pred             HHHhhcCCHHHHHHHHHhhcccCCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCChHhHHHHH
Q 010342          323 FGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GV-VADSTTYAIVI  393 (512)
Q Consensus       323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~  393 (512)
                      ..+...|++++|...+.+.+....-.++    ..++..+...|...|++++|...+++..+.    +. +....++..+.
T Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  271 (383)
T 3ulq_A          192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT  271 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence            8888888888888888776643211122    246777888888899999999998888762    22 33455788888


Q ss_pred             HHHHhcCCHHHHHHHHHHhhcCC----CCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChhhHHHHHHH
Q 010342          394 DGLCESNQLDEAKRFWDDIVWPS----NIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTP-NIVCYNVVIDG  465 (512)
Q Consensus       394 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~  465 (512)
                      .+|...|++++|...+++..+..    .+.....+..+...+...|+   +++|..++++.   +..| ....+..+...
T Consensus       272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence            89999999999999988876421    12222345667788888888   66777776655   2233 34467778889


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 010342          466 ACKLSMKREAYQILREMRK  484 (512)
Q Consensus       466 ~~~~g~~~~a~~~~~~m~~  484 (512)
                      |...|++++|.+.+++..+
T Consensus       349 y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            9999999999999988764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.51  E-value=1.9e-13  Score=122.47  Aligned_cols=281  Identities=14%  Similarity=0.061  Sum_probs=154.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA  106 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (512)
                      .+......+...|++++|...|+++.+.. +.+    ...+..+...+...|++++|...+.+.++......+......+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            34455666677777777777777776642 112    2456666677777777777777777766655444333333455


Q ss_pred             HHHHHHHHHccCChhHHHHHHHhcCCCCC-----CCcchhHHHHHHHHHhcCC--------------------hhhHHHH
Q 010342          107 FANLVDSLCREGYVNEVFRIAEDMPQGKS-----VNEEFACGHMIDSLCRSGR--------------------NHGASRV  161 (512)
Q Consensus       107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~  161 (512)
                      +..+...+...|++++|...+++......     .....++..+...+...|+                    +++|...
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            66666666677777777666665432110     0012245555566666666                    5666655


Q ss_pred             HHHHHHc----CCCC-CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCC-C----chhhHHHHHHHHhccCCHHHHHHH
Q 010342          162 VYVMRKR----GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-P----SEHTYKVLVEGLCGESDLEKARKV  231 (512)
Q Consensus       162 ~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~  231 (512)
                      ++.....    +..| ...++..+...+...|++++|.+.++++.+.... +    ...++..+...+...|++++|...
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5544321    1111 1234555566666666666666666665432100 0    122455555566666666666666


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 010342          232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK-  309 (512)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  309 (512)
                      +++......                               ..+. .....++..+...+...|++++|...+++..... 
T Consensus       246 ~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          246 YKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            655442100                               0000 0013455666667777777777777776654321 


Q ss_pred             ---CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc
Q 010342          310 ---FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP  343 (512)
Q Consensus       310 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  343 (512)
                         .......++..+...+...|++++|...+.+.+.
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence               0011234566677777777777777777776553

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.51  E-value=5.3e-13  Score=121.92  Aligned_cols=239  Identities=9%  Similarity=-0.073  Sum_probs=116.2

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCC------CCcchhHHH
Q 010342           71 VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS------VNEEFACGH  144 (512)
Q Consensus        71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~  144 (512)
                      ...+...|++++|...+.+.++.....++......++..+...+...|++++|...+++..+...      .....+++.
T Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            34455566666666666665544333222122334555555555556665555555544322100      011123444


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCC-CC----cchHHHHHHHHhccCchhHHHHHHHHHHhC----CC-CCchhhHHH
Q 010342          145 MIDSLCRSGRNHGASRVVYVMRKRGLT-PS----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GY-LPSEHTYKV  214 (512)
Q Consensus       145 l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~  214 (512)
                      +..+|...|++++|...++...+.... ++    ..++..+...|...|++++|.+.+++..+.    +. +....++..
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  269 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL  269 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            444555555555555555444321000 00    113444444444455555555554444431    11 122334444


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 010342          215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR  294 (512)
Q Consensus       215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  294 (512)
                      +...+...|++++|...+++.....                               .+.+.+.....+..+...+...|+
T Consensus       270 l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~~~  318 (383)
T 3ulq_A          270 ITQIHYKLGKIDKAHEYHSKGMAYS-------------------------------QKAGDVIYLSEFEFLKSLYLSGPD  318 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHhCCCc
Confidence            4444444444444444444433210                               001111112234566777777787


Q ss_pred             ---HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc
Q 010342          295 ---IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP  343 (512)
Q Consensus       295 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  343 (512)
                         +++|+.++++...   .+.....+..+...|...|++++|...+.+.+.
T Consensus       319 ~~~~~~al~~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          319 EEAIQGFFDFLESKML---YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               6777777766521   133445667788888888888888888877653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=1.2e-12  Score=122.60  Aligned_cols=196  Identities=10%  Similarity=-0.053  Sum_probs=145.4

Q ss_pred             ChhhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010342          278 DVITLNTVINGFCKMGRI-EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA  356 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  356 (512)
                      +...+..+..++...|++ ++|+..|++..+..  +.+...|..+..+|...|++++|...|.+.+..   .|+...+..
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~  175 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKNKVSLQN  175 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCCHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCHHHHHH
Confidence            566677777777777777 77777777777654  456677777777777778888888777776543   355667777


Q ss_pred             HHHHHHcc---------CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHHhhcCCCC-
Q 010342          357 VLRGLFRL---------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--------NQLDEAKRFWDDIVWPSNI-  418 (512)
Q Consensus       357 l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~-  418 (512)
                      +...+...         |++++|...|++..+.. +.+...+..+..+|...        |++++|...|+++.+.. + 
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~  253 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK  253 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CC
Confidence            77777777         88888888888887754 45567777888888777        88888888888887653 3 


Q ss_pred             --CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          419 --HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE  481 (512)
Q Consensus       419 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  481 (512)
                        .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+.+
T Consensus       254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              467788888888888888888888888887764 22566777888888888888888765443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=2.7e-11  Score=106.73  Aligned_cols=168  Identities=9%  Similarity=0.016  Sum_probs=105.7

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV-TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA  356 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  356 (512)
                      +...|..++..+.+.|++++|..+|++..+..  +.+.. .|..++..+.+.|++++|..+|.+.+...  +++...|..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~  173 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVT  173 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence            44456666666666666667777666666543  22232 56666666666677777777776655432  223333333


Q ss_pred             HHHHHH-ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCC--CHHhHHHHHHHHH
Q 010342          357 VLRGLF-RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIH--DNYVYAAMIKGLC  432 (512)
Q Consensus       357 l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~  432 (512)
                      ...... ..|++++|..+|++..+.. +.+...+..++..+.+.|++++|..+|++++... .+|  ....|..++..+.
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~  252 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            322211 2577777777777777642 4456677777777777788888888888777642 233  3556777777777


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 010342          433 RSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       433 ~~g~~~~a~~~~~~~~~~  450 (512)
                      +.|+.++|..+++++.+.
T Consensus       253 ~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          253 NIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHSCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            778888888888777765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=2.9e-12  Score=113.40  Aligned_cols=240  Identities=12%  Similarity=-0.010  Sum_probs=157.4

Q ss_pred             cccHHHHHHHHHccCChhhHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC
Q 010342          244 TRICNIYLRALCLIKNPTELLNVLVFMLQT-------QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KF  310 (512)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~  310 (512)
                      ...+..+...+...|++++|...++.+.+.       ..+.....+..+...+...|++++|...+++....      ..
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            346777788888888999888888887763       22334566777888888888999988888887753      21


Q ss_pred             CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC-----CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----
Q 010342          311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR-----GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----  380 (512)
Q Consensus       311 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----  380 (512)
                      .+.....+..+...+...|++++|...+.+.+...     +. +.....+..+...+...|++++|...++++.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            13345677788888888888888888888876432     11 223455777778888888888888888888763    


Q ss_pred             --CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC-------CCCCCH-------HhHHHHHHHHHhcCCHHHHHHH
Q 010342          381 --GVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWP-------SNIHDN-------YVYAAMIKGLCRSGKIHEAVHF  443 (512)
Q Consensus       381 --~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~  443 (512)
                        +..| ...++..+..+|...|++++|...++++.+.       ...+..       ..+..+...+...+.+.++...
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              1122 2346777888888888888888888887642       111111       1122222233334455555556


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       444 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      +....... +.+..++..+..+|.+.|++++|.+++++..+
T Consensus       267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            65555432 33567788999999999999999999999875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.44  E-value=4.1e-13  Score=118.92  Aligned_cols=248  Identities=14%  Similarity=0.078  Sum_probs=144.2

Q ss_pred             cchHHHHHHHHhccCchhHHHHHHHHHHhC-------CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 010342          174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI  246 (512)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  246 (512)
                      ..++..+...+...|++++|...++++.+.       ..+....++..+...+...|++++|...+++.....       
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------   99 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------   99 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence            446677777788888888888888877663       223345567777777777888888887777665320       


Q ss_pred             HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCcHHHHHH
Q 010342          247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTT  320 (512)
Q Consensus       247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~  320 (512)
                                           ........+.....+..+...+...|++++|...+++..+.      +..+.....+..
T Consensus       100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  158 (311)
T 3nf1_A          100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN  158 (311)
T ss_dssp             ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence                                 00000001113445566666777777777777777766543      111233455666


Q ss_pred             HHHHHhhcCCHHHHHHHHHhhccc------CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCChH
Q 010342          321 IIFGLLNVGRIQEALNLLYQVMPQ------RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-------GVVADST  387 (512)
Q Consensus       321 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~  387 (512)
                      +...+...|++++|...+.+.+..      ...+....++..+...+...|++++|...++++.+.       ...+...
T Consensus       159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  238 (311)
T 3nf1_A          159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK  238 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence            777777777777777777765543      111222345666777777888888888888777652       1111111


Q ss_pred             -------hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          388 -------TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       388 -------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                             .+..+...+...+.+.++...++...... +.+..++..+..+|...|++++|.+.+++..+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                   12222233344455666666666665432 445667888999999999999999999888763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.44  E-value=4.5e-12  Score=118.59  Aligned_cols=195  Identities=8%  Similarity=-0.038  Sum_probs=141.7

Q ss_pred             CcccHHHHHHHHHccCCh-hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010342          243 RTRICNIYLRALCLIKNP-TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI  321 (512)
Q Consensus       243 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  321 (512)
                      ....+..+...+...|++ ++|+..++...+..+ .+...|..+..+|...|++++|...|++..+..   |+...+..+
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~l  176 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KNKVSLQNL  176 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCHHHHHHH
Confidence            334444445555555555 555555555554432 256677788888888888888888888887764   446777778


Q ss_pred             HHHHhhc---------CCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCC-
Q 010342          322 IFGLLNV---------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL--------RRVEEAKEVFNCMLGIGVV-  383 (512)
Q Consensus       322 ~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~-  383 (512)
                      ...+...         |++++|+..+.+.+...  +.+...|..+..+|...        |++++|...|++..+.. + 
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~  253 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK  253 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CC
Confidence            8888888         88888888888876554  44566777777888777        88888888888888753 3 


Q ss_pred             --CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          384 --ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY  445 (512)
Q Consensus       384 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  445 (512)
                        .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.
T Consensus       254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              467788888888888999999999998887664 5566678888888888888888876553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.42  E-value=6.6e-11  Score=107.60  Aligned_cols=279  Identities=13%  Similarity=-0.011  Sum_probs=159.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010342           32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF  107 (512)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (512)
                      .......+...|++++|...+++........+..    +++.+...+...|++++|...+.+.....+..+.......++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4445556778899999999999987753212222    455566777888999999998888887666543333333445


Q ss_pred             HHHHHHHHccCChhHHHHHHHhcCCC----CCC--C-cchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC----Ccch
Q 010342          108 ANLVDSLCREGYVNEVFRIAEDMPQG----KSV--N-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP----SLVS  176 (512)
Q Consensus       108 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p----~~~~  176 (512)
                      ..+...+...|++++|...+++....    +..  | ....+..+...+...|++++|...+++........    ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            66777788888888888777765431    111  1 22344556667777777777777777765532211    1234


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHhCCCCCch-hhHH-----HHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 010342          177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-HTYK-----VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY  250 (512)
Q Consensus       177 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  250 (512)
                      +..+...+...|++++|...+++.......++. ..+.     ..+..+...|+++.|...++........+..      
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------  250 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH------  250 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch------
Confidence            556666667777777777777766543111111 1111     1223355667777777766665432111000      


Q ss_pred             HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCcH-HHHHHHHHHHh
Q 010342          251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK---FCAPDA-VTFTTIIFGLL  326 (512)
Q Consensus       251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~  326 (512)
                                                .....+..+...+...|++++|...++......   ...++. ..+..+..++.
T Consensus       251 --------------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~  304 (373)
T 1hz4_A          251 --------------------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW  304 (373)
T ss_dssp             --------------------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             --------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence                                      011123445556666666666666666554311   001111 24455556666


Q ss_pred             hcCCHHHHHHHHHhhc
Q 010342          327 NVGRIQEALNLLYQVM  342 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~  342 (512)
                      ..|+.++|...+.+.+
T Consensus       305 ~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          305 QAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             HHTCHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHH
Confidence            6777777776666654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=3.8e-11  Score=97.05  Aligned_cols=165  Identities=12%  Similarity=0.039  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 010342          315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID  394 (512)
Q Consensus       315 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  394 (512)
                      ...+..+...+...|++++|...+.+.+...  +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            4456666777777888888888887755332  3456667777777888888888888888877753 456677778888


Q ss_pred             HHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 010342          395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE  474 (512)
Q Consensus       395 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  474 (512)
                      .+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence            8888888888888888887654 5567778888888888888888888888887764 3356778888888888888888


Q ss_pred             HHHHHHHHHH
Q 010342          475 AYQILREMRK  484 (512)
Q Consensus       475 a~~~~~~m~~  484 (512)
                      |.+.++++.+
T Consensus       163 A~~~~~~~~~  172 (186)
T 3as5_A          163 ALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.40  E-value=3.7e-11  Score=109.39  Aligned_cols=229  Identities=10%  Similarity=-0.032  Sum_probs=153.2

Q ss_pred             HHHccCChhhHHHHHHHHHhcCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----CCcHHHHHHHH
Q 010342          253 ALCLIKNPTELLNVLVFMLQTQC-QP----DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-----APDAVTFTTII  322 (512)
Q Consensus       253 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~  322 (512)
                      .+...|++++|...+....+... .+    ....+..+...|...|+++.|...+++..+....     .....++..+.
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            34445555555555555443211 01    2345677777888888888888888776542110     11245677788


Q ss_pred             HHHhhcCCHHHHHHHHHhhcccCCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCChHhHHHHHH
Q 010342          323 FGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GVVADSTTYAIVID  394 (512)
Q Consensus       323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~  394 (512)
                      ..+...|++++|.+.+.+.+....-.++    ..++..+...|...|++++|...+++..+.    +.+....++..+..
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            8888888888888888776643211112    345677888888899999999999888761    22334667888889


Q ss_pred             HHHhcCCHHHHHHHHHHhhcCC----CCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChhhHHHHHHHH
Q 010342          395 GLCESNQLDEAKRFWDDIVWPS----NIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTP-NIVCYNVVIDGA  466 (512)
Q Consensus       395 ~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~  466 (512)
                      +|.+.|++++|...+++..+..    .+.....+..+...+...++   +.+|...+++   .+..| ....+..+...|
T Consensus       270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y  346 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVF  346 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHH
Confidence            9999999999999998876432    12223456666667777788   6777776665   22222 234566788889


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 010342          467 CKLSMKREAYQILREMRK  484 (512)
Q Consensus       467 ~~~g~~~~a~~~~~~m~~  484 (512)
                      ...|++++|.+.+++..+
T Consensus       347 ~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          347 ESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            999999999999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.38  E-value=1.3e-10  Score=105.77  Aligned_cols=234  Identities=10%  Similarity=-0.053  Sum_probs=168.0

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChH----hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCh----hhHHHHHHHH
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVV----SYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPNS----LTYSVLVRGV   74 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l~~~~   74 (512)
                      +...|++++|...+++........+..    +++.+...+...|++++|...+++...... .++.    .++..+...+
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  103 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  103 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            456899999999999988864332322    567777888999999999999998765310 1122    2356677888


Q ss_pred             HhcCChhhHHHHHHHHHHHhhhcCCC--CcchHhHHHHHHHHHccCChhHHHHHHHhcCCC----CCCCcchhHHHHHHH
Q 010342           75 LRTRDVERANVLMFKLWERMKEEEDL--SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG----KSVNEEFACGHMIDS  148 (512)
Q Consensus        75 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~  148 (512)
                      ...|++++|...+.+.++..+...+.  ......+..+...+...|++++|...+++....    +......++..+...
T Consensus       104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  183 (373)
T 1hz4_A          104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC  183 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence            89999999999999998877655433  223456777888999999999999999875432    211123456778888


Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCCc-chHH-----HHHHHHhccCchhHHHHHHHHHHhCCCCC---chhhHHHHHHHH
Q 010342          149 LCRSGRNHGASRVVYVMRKRGLTPSL-VSYN-----SIVHGLCKHGGCMRAYQLLEEGIQFGYLP---SEHTYKVLVEGL  219 (512)
Q Consensus       149 ~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~  219 (512)
                      +...|++++|...++........++. ..+.     ..+..+...|++++|...+++.......+   ....+..+...+
T Consensus       184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~  263 (373)
T 1hz4_A          184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ  263 (373)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence            99999999999999988764222221 1222     23344778999999999999887643221   122456677888


Q ss_pred             hccCCHHHHHHHHHHHHh
Q 010342          220 CGESDLEKARKVLQFMLS  237 (512)
Q Consensus       220 ~~~g~~~~a~~~~~~~~~  237 (512)
                      ...|++++|...++....
T Consensus       264 ~~~g~~~~A~~~l~~a~~  281 (373)
T 1hz4_A          264 ILLGEFEPAEIVLEELNE  281 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            888999999988887754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.38  E-value=5e-11  Score=96.36  Aligned_cols=166  Identities=12%  Similarity=0.074  Sum_probs=138.6

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010342          279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL  358 (512)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  358 (512)
                      ...+..+...+...|++++|...++++....  +.+...+..+...+...|++++|...+.+.+...  +.+...+..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a   83 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLG   83 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence            3456677778888899999999998887654  5677888888889999999999999998876553  44667788888


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHH
Q 010342          359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH  438 (512)
Q Consensus       359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  438 (512)
                      ..+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A           84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence            88999999999999999988764 5577788888999999999999999999988764 556788899999999999999


Q ss_pred             HHHHHHHHHHHC
Q 010342          439 EAVHFLYELVDS  450 (512)
Q Consensus       439 ~a~~~~~~~~~~  450 (512)
                      +|.+.++++.+.
T Consensus       162 ~A~~~~~~~~~~  173 (186)
T 3as5_A          162 EALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999988765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.37  E-value=2.6e-11  Score=117.94  Aligned_cols=167  Identities=12%  Similarity=0.027  Sum_probs=106.4

Q ss_pred             CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 010342          312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI  391 (512)
Q Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  391 (512)
                      +.+..+++.+...+.+.|++++|+..|++.++..  +-+...+..+..+|.+.|++++|+..|++..+.. +.+...|..
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n   82 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN   82 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            3345566666666666666666666666655443  3345566666666666667777777666666643 334556666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010342          392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM  471 (512)
Q Consensus       392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  471 (512)
                      +..+|...|++++|.+.|+++++.+ +.+...+..+..+|...|++++|++.|++.++... -+...+..+..++...|+
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhccc
Confidence            6777777777777777777666543 44556667777777777777777777777666532 245566667777777777


Q ss_pred             HHHHHHHHHHHH
Q 010342          472 KREAYQILREMR  483 (512)
Q Consensus       472 ~~~a~~~~~~m~  483 (512)
                      +++|.+.++++.
T Consensus       161 ~~~A~~~~~kal  172 (723)
T 4gyw_A          161 WTDYDERMKKLV  172 (723)
T ss_dssp             CTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777766666654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.36  E-value=1.3e-10  Score=97.45  Aligned_cols=209  Identities=12%  Similarity=0.042  Sum_probs=157.8

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010342          277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA  356 (512)
Q Consensus       277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  356 (512)
                      .++..+......+...|++++|+..|++..+... +++...+..+..++...|++++|+..+.+.+...  +.+...+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~   81 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIG   81 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHH
Confidence            4667888889999999999999999999988662 2777788889999999999999999999977543  345677888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCh-------HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CHHhHHHH
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADS-------TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAM  427 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l  427 (512)
                      +...+...|++++|...+++..+.. +.+.       ..|..+...+...|++++|...++++++.+ +.  +...+..+
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l  159 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence            9999999999999999999998854 3445       457888888999999999999999998763 33  45677888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHh
Q 010342          428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV-TWRILDKL  500 (512)
Q Consensus       428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~  500 (512)
                      ..+|...|     ...++++...+ ..+...|....  ....+.+++|...+++..+  +.|+.. +...+..+
T Consensus       160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHHH
Confidence            88876544     44455655543 22344444333  3446778999999999988  456544 44444333

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.34  E-value=1.4e-10  Score=105.45  Aligned_cols=319  Identities=10%  Similarity=-0.044  Sum_probs=165.0

Q ss_pred             CCChHhHHHHHHHH--HhcCChhHHHHHHHHHHhC--CCCCChh--hHHHHHHHH--HhcCChhhHH---------HHHH
Q 010342           26 VPNVVSYTTLIHGY--CRTGEMDVAYKVFDEMRHC--GVLPNSL--TYSVLVRGV--LRTRDVERAN---------VLMF   88 (512)
Q Consensus        26 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~--~~~~~~~--~~~~l~~~~--~~~~~~~~a~---------~~~~   88 (512)
                      .|+...-+.|-..|  .+.+++++|..+++++.+.  .+..|..  .|..++..-  ...+....+.         ..+.
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            55666777777777  8899999999999988653  2223333  334443321  1122222222         2222


Q ss_pred             HHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCC-----CCcchhHHHHHHHHHhcCChhhHHHHHH
Q 010342           89 KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-----VNEEFACGHMIDSLCRSGRNHGASRVVY  163 (512)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (512)
                      .+ +......+.......+......+...|++++|...|++......     .....++..+..+|...|+++.|...++
T Consensus        87 ~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           87 TI-ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             HH-HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HH-hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            22 11110000000111223344555677777777777776544311     0123455566667777777777777766


Q ss_pred             HHHHcCC-----CC-CcchHHHHHHHHhccCchhHHHHHHHHHHhC----CCCC-chhhHHHHHHHHhccCCHHHHHHHH
Q 010342          164 VMRKRGL-----TP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLP-SEHTYKVLVEGLCGESDLEKARKVL  232 (512)
Q Consensus       164 ~~~~~g~-----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~  232 (512)
                      +..+...     .+ ...+++.+...|...|++++|.+.+++..+.    +..+ ...++..+..++...|++++|...+
T Consensus       166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~  245 (378)
T 3q15_A          166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF  245 (378)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            6544210     00 1235556666666677777777766665542    1111 1234555566666666666666666


Q ss_pred             HHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--
Q 010342          233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF--  310 (512)
Q Consensus       233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--  310 (512)
                      ++.....                            ...  .. +....++..+...+.+.|++++|...+++......  
T Consensus       246 ~~al~~~----------------------------~~~--~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          246 QKAAKVS----------------------------REK--VP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             HHHHHHH----------------------------HHH--CG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHH----------------------------Hhh--CC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            6554310                            000  11 11244555666666666777777776666554211  


Q ss_pred             -CCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342          311 -CAPDAVTFTTIIFGLLNVGR---IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG  379 (512)
Q Consensus       311 -~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  379 (512)
                       .+.....+..+...+...++   ..+|+..+.+.   ...+.....+..+...|...|++++|...|++..+
T Consensus       295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             02223344555555556666   66666666541   11122233455566677777777777777766654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.33  E-value=2.1e-10  Score=96.15  Aligned_cols=197  Identities=11%  Similarity=-0.003  Sum_probs=156.1

Q ss_pred             CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010342          242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI  321 (512)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  321 (512)
                      .++..+......+...|++++|...|....+...+++...+..+..++...|++++|+..+++..+..  +.+...+..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence            34567888889999999999999999999998765677888889999999999999999999999876  5678899999


Q ss_pred             HHHHhhcCCHHHHHHHHHhhcccCCCCCCh-------hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--ChHhHHHH
Q 010342          322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGI-------VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIV  392 (512)
Q Consensus       322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l  392 (512)
                      ...+...|++++|...+.+.+...  +.+.       ..|..+...+...|++++|...|++..+.. +.  +...+..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l  159 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence            999999999999999999987654  2333       457778888899999999999999999863 33  35677888


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       393 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      ..+|...|     ..+++++...+ ..+...+....  ....+.+++|...+++..+..
T Consensus       160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            88886554     44455555443 33444444433  334567899999999998864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.32  E-value=5.7e-11  Score=115.58  Aligned_cols=166  Identities=17%  Similarity=0.103  Sum_probs=137.4

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV  357 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  357 (512)
                      +...++.+...+.+.|++++|+..|++..+..  +.+..++..+..++.+.|++++|+..|++.++..  +-+...|..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL   83 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            45678888888889999999999998888765  5677888888888999999999999888877554  3456788888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010342          358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI  437 (512)
Q Consensus       358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  437 (512)
                      ..++...|++++|++.|++..+.. +-+...+..+..+|...|++++|...|+++++.. +.+...+..+..++...|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence            888999999999999999888864 4567788889999999999999999999988764 55677888899999999999


Q ss_pred             HHHHHHHHHHHH
Q 010342          438 HEAVHFLYELVD  449 (512)
Q Consensus       438 ~~a~~~~~~~~~  449 (512)
                      ++|.+.++++++
T Consensus       162 ~~A~~~~~kal~  173 (723)
T 4gyw_A          162 TDYDERMKKLVS  173 (723)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888887664

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.31  E-value=3.3e-11  Score=104.88  Aligned_cols=229  Identities=13%  Similarity=0.004  Sum_probs=157.3

Q ss_pred             HccCChhhHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCcHHHHHHH
Q 010342          255 CLIKNPTELLNVLVFMLQT-------QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTI  321 (512)
Q Consensus       255 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l  321 (512)
                      ...|++++|...+++..+.       ..+....++..+...+...|++++|...+++....      ...+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567788888777776652       22234567888899999999999999999998754      2213456778889


Q ss_pred             HHHHhhcCCHHHHHHHHHhhcccC-----C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCChHh
Q 010342          322 IFGLLNVGRIQEALNLLYQVMPQR-----G-YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI------G-VVADSTT  388 (512)
Q Consensus       322 ~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~  388 (512)
                      ...+...|++++|...+.+.+...     . .+.....+..+...+...|++++|...+++..+.      + .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999876541     1 1234567788889999999999999999998774      1 1223457


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhcC-------CCCC-CHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCC
Q 010342          389 YAIVIDGLCESNQLDEAKRFWDDIVWP-------SNIH-DNYVYAAMIKGLCRSGKI------HEAVHFLYELVDSGVTP  454 (512)
Q Consensus       389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~p  454 (512)
                      +..+..+|...|++++|...++++.+.       ...+ ....+..+...+...+..      ..+...++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888899999999999999999988642       1122 222334343333333322      222222222111 1122


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          455 NIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       455 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ...++..+...|...|++++|.+++++..+
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345688899999999999999999999875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.27  E-value=6.9e-11  Score=102.83  Aligned_cols=230  Identities=15%  Similarity=0.084  Sum_probs=160.3

Q ss_pred             hccCCHHHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc------CC-CCChhhHHHH
Q 010342          220 CGESDLEKARKVLQFMLS-------KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT------QC-QPDVITLNTV  285 (512)
Q Consensus       220 ~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l  285 (512)
                      ...|+++.|...+++..+       ...+.....+..+...+...|++++|...+....+.      +. +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            456777777777766554       222334567888999999999999999999998765      22 2245678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhC------CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc------CCCCCChhh
Q 010342          286 INGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ------RGYSPGIVT  353 (512)
Q Consensus       286 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~  353 (512)
                      ..++...|++++|...+++....      ...+....++..+...+...|++++|...+.+.+..      ...+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998764      111345678888999999999999999999998754      111223567


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCh-HhHHHHHHHHHhcCC------HHHHHHHHHHhhcCCCCC
Q 010342          354 YNAVLRGLFRLRRVEEAKEVFNCMLGI-------GVVADS-TTYAIVIDGLCESNQ------LDEAKRFWDDIVWPSNIH  419 (512)
Q Consensus       354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~  419 (512)
                      +..+...+...|++++|...+++..+.       ...+.. ..+..+...+...+.      +..+...++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888899999999999999999998763       112222 234444444433333      2333333333221 1123


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       420 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      ...++..+...|...|++++|...+++.++.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4557888999999999999999999988753

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.23  E-value=6.1e-09  Score=88.71  Aligned_cols=179  Identities=9%  Similarity=0.065  Sum_probs=91.9

Q ss_pred             HHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 010342          298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM  377 (512)
Q Consensus       298 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  377 (512)
                      |+..|++....+  .++..++..+..++...|++++|++++.+.+......-+...+..++..+.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            455555555433  233444445556666666666666666654322211123445555666666666666666666666


Q ss_pred             HhCCCCC-----ChHhHHHHHHH--HHhcC--CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          378 LGIGVVA-----DSTTYAIVIDG--LCESN--QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       378 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      .+.  .|     +..+...|..+  ....|  ++.+|..+|+++...  .|+..+...++.++...|++++|.+.++.+.
T Consensus       163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            553  34     23344444444  22223  666666666666443  2332222333335666666666666666544


Q ss_pred             HCC-----C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          449 DSG-----V----TPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       449 ~~~-----~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      +.-     .    +.++.++..++......|+  +|.++++++.+
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence            320     0    2244455444444444554  56666666665

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.23  E-value=4.6e-09  Score=91.50  Aligned_cols=150  Identities=9%  Similarity=0.005  Sum_probs=84.2

Q ss_pred             ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHH
Q 010342           44 EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV  123 (512)
Q Consensus        44 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  123 (512)
                      ++++|...|++.               ...+...|++++|...+.+.++..+..++......+|+.+...|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777776               33466778888888887777665444322222234566666666666666666


Q ss_pred             HHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc-CchhHHHHHHHHHHh
Q 010342          124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH-GGCMRAYQLLEEGIQ  202 (512)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  202 (512)
                      +..+++...               .+...|+...+               ..+++.+...|... |++++|+..|++..+
T Consensus        97 ~~~~~~Al~---------------l~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           97 VDSLENAIQ---------------IFTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHH---------------HHHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---------------HHHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            666554322               11111221111               22455566666664 777777777766654


Q ss_pred             CCCCC-c----hhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010342          203 FGYLP-S----EHTYKVLVEGLCGESDLEKARKVLQFMLSK  238 (512)
Q Consensus       203 ~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  238 (512)
                      ..... +    ..++..+...+...|++++|...|++....
T Consensus       147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  187 (292)
T 1qqe_A          147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            31000 0    234556666666666666666666666543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.22  E-value=3.5e-08  Score=92.18  Aligned_cols=349  Identities=7%  Similarity=-0.088  Sum_probs=195.7

Q ss_pred             CChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCC-hhhHHHHHHHHHHc-CCCC-CcchHHHHHHHHh----ccCch
Q 010342          118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR-NHGASRVVYVMRKR-GLTP-SLVSYNSIVHGLC----KHGGC  190 (512)
Q Consensus       118 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-g~~p-~~~~~~~l~~~~~----~~~~~  190 (512)
                      |+++.+..+|++....-  |+...|...+....+.++ .+....+|+..... |..| +...|...+..+.    ..++.
T Consensus        28 ~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~  105 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI  105 (493)
T ss_dssp             TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred             CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence            55666777777666532  466666666665555542 34455666655542 3322 4456665555443    23456


Q ss_pred             hHHHHHHHHHHhCCCCCchhhHHHHHHHHh-------------ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc
Q 010342          191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-------------GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI  257 (512)
Q Consensus       191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  257 (512)
                      +.+..+|++++......-...|......-.             ..+.+..|..+++.+...-...+...|..++..-...
T Consensus       106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~  185 (493)
T 2uy1_A          106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN  185 (493)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence            667777777765321111122221111100             0112333444444333210001222444444432221


Q ss_pred             C--C-----hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342          258 K--N-----PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR  330 (512)
Q Consensus       258 ~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (512)
                      +  -     .+.+..+|+.++...+ .+...|...+..+.+.|+.+.|..++++....   +.+...+..    |....+
T Consensus       186 ~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e  257 (493)
T 2uy1_A          186 GMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMD  257 (493)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTT
T ss_pred             CccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcc
Confidence            1  1     2346678888877643 35778888888888899999999999998876   223222222    222111


Q ss_pred             HHHHHHHHHhhcccCC-----C---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc-CC
Q 010342          331 IQEALNLLYQVMPQRG-----Y---SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQ  401 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~  401 (512)
                      .++..+.+.+......     .   ......|...+....+.++.+.|..+|+.. ... +.+...|......-... ++
T Consensus       258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d  335 (493)
T 2uy1_A          258 EEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGS  335 (493)
T ss_dssp             CTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCC
Confidence            1111111211110000     0   111245666666666788899999999999 321 23444444323222223 36


Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE  481 (512)
Q Consensus       402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  481 (512)
                      .+.|..+|+...+.. +.+...+...++.....|+.+.|..+|+++.     .....|...+..-...|+.+.+..++++
T Consensus       336 ~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~  409 (493)
T 2uy1_A          336 RATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ  409 (493)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999998653 3345566777887888999999999999872     2567888888877888999999998888


Q ss_pred             HHH
Q 010342          482 MRK  484 (512)
Q Consensus       482 m~~  484 (512)
                      +..
T Consensus       410 ~~~  412 (493)
T 2uy1_A          410 KMD  412 (493)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.20  E-value=3.4e-10  Score=98.68  Aligned_cols=172  Identities=12%  Similarity=-0.015  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHC----GVLPN-SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA  105 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  105 (512)
                      .|...+..|...|++++|...|++..+.    |.+++ ..+|+.+..+|...|++++|...+.+.++..+..++......
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3555567788999999999999988653    21222 457889999999999999999999998877665433332345


Q ss_pred             hHHHHHHHHHcc-CChhHHHHHHHhcCCCCCCC-----cchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcc----
Q 010342          106 AFANLVDSLCRE-GYVNEVFRIAEDMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV----  175 (512)
Q Consensus       106 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~----  175 (512)
                      ++..+...|... |++++|+..|++.....+..     ...++..+...+...|++++|...|+...+........    
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            667777777775 77777777776654321100     02345556666666666666666666666543221111    


Q ss_pred             --hHHHHHHHHhccCchhHHHHHHHHHHh
Q 010342          176 --SYNSIVHGLCKHGGCMRAYQLLEEGIQ  202 (512)
Q Consensus       176 --~~~~l~~~~~~~~~~~~a~~~~~~~~~  202 (512)
                        .|..+..++...|++++|...|++..+
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              344555556666666666666666554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.20  E-value=8e-10  Score=90.90  Aligned_cols=191  Identities=10%  Similarity=-0.004  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG  360 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  360 (512)
                      .+......+...|++++|+..|++.....  +.+...+...     .              + .............+..+
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~--------------~-~~~~~~~~~~~~~lg~~   63 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----N--------------V-DKNSEISSKLATELALA   63 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----H--------------S-CTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----h--------------h-cchhhhhHHHHHHHHHH
Confidence            34445556677788888888888877643  2223322220     0              0 00001112223346777


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC--HH
Q 010342          361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK--IH  438 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~  438 (512)
                      +.+.|++++|...|++..+.. |.+...+..+..++...|++++|...|+++++.+ +.+..++..+..+|...|+  .+
T Consensus        64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~  141 (208)
T 3urz_A           64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK  141 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence            788888888888888887754 4566778888888888888888888888887764 5566777777777765543  33


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 010342          439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK  499 (512)
Q Consensus       439 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  499 (512)
                      .+...++....  ..|....+.....++...|++++|...|++..+  +.|+......|.+
T Consensus       142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~  198 (208)
T 3urz_A          142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence            44555544432  223333444456666677888888888888876  5677665555543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.19  E-value=3.1e-08  Score=92.55  Aligned_cols=385  Identities=7%  Similarity=-0.044  Sum_probs=190.8

Q ss_pred             ccC-cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-hhhH
Q 010342            6 GLS-RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD-VERA   83 (512)
Q Consensus         6 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a   83 (512)
                      +.| +++.|+.+|+++.+.  -|.              |+++.+..+|++....  .|+...|...+....+.++ .+..
T Consensus         6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            456 488888888888875  333              7899999999999885  5789999888887777663 3445


Q ss_pred             HHHHHHHHHHhhhcCCCCcchHhHHHHHHHHH----ccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHH
Q 010342           84 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLC----REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS  159 (512)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  159 (512)
                      ..+|+..+..+..   -..+...|...+..+.    ..|+.+.+.++|++........-...|...... ........+.
T Consensus        68 ~~~fe~al~~vg~---d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~  143 (493)
T 2uy1_A           68 YEVYEFTLGQFEN---YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGK  143 (493)
T ss_dssp             HHHHHHHHHHSTT---CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHH
T ss_pred             HHHHHHHHHHcCC---CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHH
Confidence            5555555544321   1234466666666554    246788899999988763211111122211111 1111111111


Q ss_pred             HHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC-------CHHHHHHHH
Q 010342          160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES-------DLEKARKVL  232 (512)
Q Consensus       160 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~  232 (512)
                      .++....                     +.+..|..+++.+...--..+...|...+..-...+       ..+.+..+|
T Consensus       144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y  202 (493)
T 2uy1_A          144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH  202 (493)
T ss_dssp             HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence            1111100                     111222222222211000011122322222211110       012234444


Q ss_pred             HHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHhhC---
Q 010342          233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA-LKVLNDMVAG---  308 (512)
Q Consensus       233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~---  308 (512)
                      +++... .+....+|..++..+...|+.+.|..++......  +.+...+..    |....+.++. ..+.+.....   
T Consensus       203 e~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~  275 (493)
T 2uy1_A          203 NYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAE  275 (493)
T ss_dssp             HHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-----
T ss_pred             HHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccc
Confidence            444432 2233444444444444455555555555554444  112111111    1111000011 0111100000   


Q ss_pred             ----CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCC
Q 010342          309 ----KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR-LRRVEEAKEVFNCMLGIGVV  383 (512)
Q Consensus       309 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~  383 (512)
                          .........|...+....+.++.+.|..+|.+. ...  ..+...|......-.. .++.+.|..+|+...+.. +
T Consensus       276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~  351 (493)
T 2uy1_A          276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-P  351 (493)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-T
T ss_pred             hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-C
Confidence                000112345666666666677888888888876 222  1233334322222222 336888999998887742 3


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       384 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      .++..+...++.....|+.+.|..+|+++.     .....|...+.--...|+.+.+..++++..+
T Consensus       352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          352 DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344455666777778888899999999873     2566788887777777898888888877764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.19  E-value=1.1e-09  Score=83.08  Aligned_cols=129  Identities=10%  Similarity=0.154  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC  432 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  432 (512)
                      .+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            45566677777788888888888777653 4456677777777888888888888888877654 455667777888888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       433 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            8888888888888887754 33566777788888888888888888888776

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=1.9e-09  Score=92.46  Aligned_cols=101  Identities=9%  Similarity=0.009  Sum_probs=60.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhh
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVT  353 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~  353 (512)
                      +...+..+...+.+.|++++|+..|+++....  +.+   ...+..+..++...|++++|+..|.+.+....-.|. ...
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            44455555666666777777777777766543  222   455666666677777777777777666544322222 334


Q ss_pred             HHHHHHHHHc--------cCCHHHHHHHHHHHHhC
Q 010342          354 YNAVLRGLFR--------LRRVEEAKEVFNCMLGI  380 (512)
Q Consensus       354 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~  380 (512)
                      +..+..++..        .|++++|...|+++.+.
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            4555555655        67777777777776664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.15  E-value=2.4e-09  Score=91.78  Aligned_cols=177  Identities=9%  Similarity=-0.033  Sum_probs=138.6

Q ss_pred             CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCChHh
Q 010342          312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV--VADSTT  388 (512)
Q Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~  388 (512)
                      +.+...+......+.+.|++++|...|.+.+....-.|. ...+..+..++.+.|++++|...|+++.+...  +.....
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            456777888888999999999999999998765422222 56778888999999999999999999998531  122456


Q ss_pred             HHHHHHHHHh--------cCCHHHHHHHHHHhhcCCCCCCHHhH-----------------HHHHHHHHhcCCHHHHHHH
Q 010342          389 YAIVIDGLCE--------SNQLDEAKRFWDDIVWPSNIHDNYVY-----------------AAMIKGLCRSGKIHEAVHF  443 (512)
Q Consensus       389 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~  443 (512)
                      +..+..++..        .|++++|...|+++++.. +.+....                 ..+...|...|++++|+..
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            7778888888        999999999999998754 3233333                 5568889999999999999


Q ss_pred             HHHHHHCCCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCh
Q 010342          444 LYELVDSGVTP--NIVCYNVVIDGACKL----------SMKREAYQILREMRKNGLNPDA  491 (512)
Q Consensus       444 ~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~  491 (512)
                      |+++++..+..  ....+..+..++...          |++++|...++++.+.  .|+.
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~  228 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS  228 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence            99998864322  245677888888866          8999999999999874  4654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.14  E-value=1.4e-08  Score=86.53  Aligned_cols=180  Identities=10%  Similarity=0.028  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhc
Q 010342          263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM  342 (512)
Q Consensus       263 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  342 (512)
                      ++..+++..+.+ .++...+..+..++...|++++|++++.+....+....+...+..++..+.+.|+.+.|.+.+.++.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344455444443 3344445566677777788888888877775544112466667777777778888888887777643


Q ss_pred             ccCCCCC-----ChhhHHHHHHHH--HccC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          343 PQRGYSP-----GIVTYNAVLRGL--FRLR--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       343 ~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                       ..  .|     +..+...+..++  ...|  ++..|..+|+++.+.  .|+..+...++.++.+.|++++|.+.++.+.
T Consensus       164 -~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 -NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             -HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             22  44     234444555442  2223  777888888887654  3443333444447777888888888887655


Q ss_pred             cCC---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          414 WPS---------NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       414 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +..         .+.|..++..++......|+  +|.+++.++.+.
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            420         13455566455555555665  777788887775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.13  E-value=2.9e-10  Score=87.87  Aligned_cols=144  Identities=13%  Similarity=0.020  Sum_probs=100.3

Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHH
Q 010342          359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH  438 (512)
Q Consensus       359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  438 (512)
                      ..+...|++++|+..++...... +.+...+..+...|.+.|++++|.+.|+++++.. +.+..+|..+..+|...|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence            34455667777777777766532 2234456667788888888888888888887664 556778888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-ChHHHHHHHHhhccCCCC
Q 010342          439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI-LREMRKNGLNP-DAVTWRILDKLHGNRGND  507 (512)
Q Consensus       439 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~  507 (512)
                      +|...|++.++..+ -+...|..+...+.+.|++++|.+. +++..+  +.| +...|....+++...|++
T Consensus        83 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~d  150 (150)
T 4ga2_A           83 KAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGED  150 (150)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCcC
Confidence            88888888877642 2567778888888888887765554 577766  345 455666666777777654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.13  E-value=3.2e-09  Score=87.26  Aligned_cols=184  Identities=5%  Similarity=-0.032  Sum_probs=108.7

Q ss_pred             HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342          247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL  326 (512)
Q Consensus       247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (512)
                      +......+...|++++|...|+...+..+. +...+..     ...             .. . ..........+..++.
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-----~~~-------------~~-~-~~~~~~~~~~lg~~~~   65 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYW-----TNV-------------DK-N-SEISSKLATELALAYK   65 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHH-----HHS-------------CT-T-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHH-----hhh-------------cc-h-hhhhHHHHHHHHHHHH
Confidence            344556778899999999999999876432 2222222     000             00 0 0112233344666677


Q ss_pred             hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC--HHH
Q 010342          327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ--LDE  404 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~  404 (512)
                      ..|++++|+..|.+.+...  +.+...+..+..++...|++++|...|++..+.. |.+...+..+..+|...|.  .+.
T Consensus        66 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~  142 (208)
T 3urz_A           66 KNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK  142 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence            7777777777777766443  3455667777777777777777777777777753 4456667777766655443  334


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC  458 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  458 (512)
                      +...++....  ..|....+..+..++...|++++|...|++.++.  .|+...
T Consensus       143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~  192 (208)
T 3urz_A          143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA  192 (208)
T ss_dssp             HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred             HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence            4455554432  1222333444555666677888888888877765  455443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.11  E-value=4.6e-09  Score=79.55  Aligned_cols=129  Identities=10%  Similarity=0.183  Sum_probs=75.6

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 010342          318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC  397 (512)
Q Consensus       318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  397 (512)
                      +..+...+...|++++|...+.+.+...  +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            3444555555555555555555544322  2234445555555566666666666666665543 334455666666666


Q ss_pred             hcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       398 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      ..|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            6677777777666665543 344556666677777777777777777766654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.10  E-value=1.3e-09  Score=106.77  Aligned_cols=173  Identities=10%  Similarity=-0.032  Sum_probs=129.2

Q ss_pred             HhcCCHHHHHHHHHHHh--------hCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHH
Q 010342          290 CKMGRIEEALKVLNDMV--------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL  361 (512)
Q Consensus       290 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  361 (512)
                      ...|++++|++.+++..        +..  +.+...+..+...+...|++++|+..|++.+...  +.+...+..+..++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~  477 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE  477 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence            66788888888888887        433  4566777778888888888888888888876544  44566777788888


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 010342          362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV  441 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  441 (512)
                      ...|++++|...|++..+.. +.+...+..+..+|...|++++ ...|+++++.+ +.+...+..+..++...|++++|.
T Consensus       478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888888888754 4466778888888888888888 88888887664 556778888888888888888888


Q ss_pred             HHHHHHHHCCCCC-ChhhHHHHHHHHHhcCC
Q 010342          442 HFLYELVDSGVTP-NIVCYNVVIDGACKLSM  471 (512)
Q Consensus       442 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  471 (512)
                      +.|++..+.+  | +...+..+..++...|+
T Consensus       555 ~~~~~al~l~--P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          555 RTLDEVPPTS--RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred             HHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence            8888877653  3 35566667777655444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.07  E-value=8e-10  Score=85.37  Aligned_cols=145  Identities=7%  Similarity=-0.046  Sum_probs=94.9

Q ss_pred             HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342          322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ  401 (512)
Q Consensus       322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  401 (512)
                      ...+...|++++|+..+.+.....  +.+...+..+...|.+.|++++|+..|++..+.. +.+..+|..+..+|...|+
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence            344455667777777776654321  2234455567777777888888888888777754 4566677778888888888


Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010342          402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF-LYELVDSGVTPNIVCYNVVIDGACKLSM  471 (512)
Q Consensus       402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~  471 (512)
                      +++|...|+++++.+ +.+..++..+...|.+.|++++|.+. +++.++..+ -++..|......+...|+
T Consensus        81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence            888888888877654 45666777777788888877665554 466666532 255666666666655553

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.06  E-value=2.9e-09  Score=84.96  Aligned_cols=78  Identities=9%  Similarity=0.068  Sum_probs=46.6

Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      |...+++.++.. +.+...+..+..++...|++++|...|+++++..+.+ +...+..+...+...|+.++|...|++..
T Consensus        93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A           93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            455555555433 3345566666666666666666666666666654332 23456666666666666666666666554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.05  E-value=3.7e-09  Score=103.56  Aligned_cols=174  Identities=11%  Similarity=0.017  Sum_probs=143.0

Q ss_pred             HccCChhhHHHHHHHHH--------hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342          255 CLIKNPTELLNVLVFML--------QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL  326 (512)
Q Consensus       255 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (512)
                      ...+++++|+..++...        +.. +.+...+..+..++...|++++|+..|++..+..  +.+...+..+..++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence            77889999999999887        333 3356778888899999999999999999998765  678889999999999


Q ss_pred             hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH
Q 010342          327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK  406 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  406 (512)
                      ..|++++|...|++.+...  +.+...+..+..++.+.|++++ ...|++..+.. +.+...+..+..++...|++++|.
T Consensus       479 ~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999987655  4456778889999999999999 99999998864 556778999999999999999999


Q ss_pred             HHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342          407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGK  436 (512)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  436 (512)
                      ..|+++.+.+ +.+...+..+..++...++
T Consensus       555 ~~~~~al~l~-P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          555 RTLDEVPPTS-RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred             HHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence            9999998754 4456677778888766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.05  E-value=2.2e-08  Score=83.50  Aligned_cols=189  Identities=9%  Similarity=0.005  Sum_probs=118.8

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh-hhHH
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTYN  355 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~  355 (512)
                      +...+..+...+.+.|++++|+..|+++.......+ ....+..+..++.+.|++++|+..|.+.+...+-.+.. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            344566667778888999999999999887542112 24567778888999999999999998877554322221 1333


Q ss_pred             HHHHHHHc------------------cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 010342          356 AVLRGLFR------------------LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN  417 (512)
Q Consensus       356 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  417 (512)
                      .+..++..                  .|++++|...|+++.+.. |-+...........          .+....     
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~-----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL-----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence            44444433                  345555555555555532 11222211111000          000000     


Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       418 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                         ......+...|.+.|++++|+..|+++++..+...  ...+..+..++.+.|++++|.+.++.+...
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence               00113456778899999999999999988632211  256888899999999999999999988874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.04  E-value=3.4e-08  Score=81.29  Aligned_cols=175  Identities=10%  Similarity=-0.054  Sum_probs=100.9

Q ss_pred             HHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC----CHHHHHHH
Q 010342          298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR----RVEEAKEV  373 (512)
Q Consensus       298 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~  373 (512)
                      |++.|++..+.    .+...+..+...+...+++++|+.+|.+....    -++..+..+...|.. +    ++++|...
T Consensus         5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            44445554442    24444555555555556666666666554422    134444455555554 4    56666666


Q ss_pred             HHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCC-CCHHhHHHHHHHHHh----cCCHHHHHHHH
Q 010342          374 FNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCR----SGKIHEAVHFL  444 (512)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~  444 (512)
                      |++..+.|   +...+..|...|..    .+++++|...|++..+.+.. .+...+..|...|..    .+++++|...|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            66665543   44555566666655    56777777777777654411 124566666666666    66777777777


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 010342          445 YELVDSGVTPNIVCYNVVIDGACKL-S-----MKREAYQILREMRKNG  486 (512)
Q Consensus       445 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~  486 (512)
                      ++..+.  ..+...+..|...|... |     ++++|..++++..+.|
T Consensus       153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            777665  22344555666666543 2     6777777777777766

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.03  E-value=1e-08  Score=88.94  Aligned_cols=164  Identities=10%  Similarity=-0.009  Sum_probs=85.7

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH-
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA-  356 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-  356 (512)
                      +...+..+...+...|++++|...|++.....  +.+...+..+...+...|++++|...+.+....   .|+...... 
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~  190 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV  190 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence            34445555566666666666666666666554  445566666666666666666666666654322   233222111 


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-CCHHhHHHHHHHHHhcC
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCRSG  435 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g  435 (512)
                      ....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...++++++.... .+...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            1122334445555555555555542 334445555555555555555555555555543211 11344555555555555


Q ss_pred             CHHHHHHHHHHH
Q 010342          436 KIHEAVHFLYEL  447 (512)
Q Consensus       436 ~~~~a~~~~~~~  447 (512)
                      +.++|...+++.
T Consensus       270 ~~~~a~~~~r~a  281 (287)
T 3qou_A          270 TGDALASXYRRQ  281 (287)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            555555555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.03  E-value=1.8e-07  Score=80.68  Aligned_cols=233  Identities=7%  Similarity=0.038  Sum_probs=154.7

Q ss_pred             hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH----hhc---CC
Q 010342          260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG--RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL----LNV---GR  330 (512)
Q Consensus       260 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~  330 (512)
                      .++|+..+..++..++. +...|+.--.++...|  ++++++..++.+....  +.+..+|+.-...+    ...   ++
T Consensus        49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCC
Confidence            34666666666665433 4555666666666667  7888888888877665  44455555443333    333   67


Q ss_pred             HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC------H
Q 010342          331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE--EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------L  402 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~  402 (512)
                      +++++..+.+++...  +-+...|+.-.-.+.+.|.++  +++..++++.+.. +-|...|+.-..++...+.      +
T Consensus       126 ~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          126 PYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             THHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            788888887776554  445666666555566667776  8888888888764 4566677766666666665      7


Q ss_pred             HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010342          403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE-AVHFLYELVDSG--VTPNIVCYNVVIDGACKLSMKREAYQIL  479 (512)
Q Consensus       403 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~  479 (512)
                      +++.+.+++++..+ +.|...|+.+...+.+.|+..+ +..+..++.+.+  -..+...+..++..+.+.|+.++|.+++
T Consensus       203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            88888888887665 6677888888888877776443 555666655432  1235677888888888888888899998


Q ss_pred             HHHHHCCCCC-ChHHHHHHHHh
Q 010342          480 REMRKNGLNP-DAVTWRILDKL  500 (512)
Q Consensus       480 ~~m~~~~~~p-~~~~~~~l~~~  500 (512)
                      +.+.+. +.| ....|....+.
T Consensus       282 ~~l~~~-~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          282 DLLKSK-YNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHHHT-TCGGGHHHHHHHHHT
T ss_pred             HHHHhc-cChHHHHHHHHHHhh
Confidence            888753 334 34455554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.02  E-value=1.6e-08  Score=87.70  Aligned_cols=180  Identities=14%  Similarity=0.085  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 010342          295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF  374 (512)
Q Consensus       295 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  374 (512)
                      .+.....+....     +.+...+..+...+...|++++|...|++.+...  +.+...+..+...+...|++++|...+
T Consensus       102 ~~~l~~~l~~~l-----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l  174 (287)
T 3qou_A          102 EEAIRALLDXVL-----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVL  174 (287)
T ss_dssp             HHHHHHHHHHHS-----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHc-----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence            344445555543     4566777888889999999999999999987665  456678888999999999999999999


Q ss_pred             HHHHhCCCCCChHhH-HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 010342          375 NCMLGIGVVADSTTY-AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT  453 (512)
Q Consensus       375 ~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  453 (512)
                      +++....  |+.... ......+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++++..+.
T Consensus       175 ~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~  251 (287)
T 3qou_A          175 XTIPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT  251 (287)
T ss_dssp             TTSCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HhCchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence            9987753  454433 233344667788888999999988765 677889999999999999999999999999987533


Q ss_pred             C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          454 P-NIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       454 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      . +...+..++..+...|+.++|...+++...
T Consensus       252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          252 AADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            2 266899999999999999999998887653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.01  E-value=6.6e-09  Score=91.25  Aligned_cols=160  Identities=9%  Similarity=0.006  Sum_probs=80.7

Q ss_pred             ccCcHHHHHHHHHHHHhCCC------CCChH----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----hhhHHHH
Q 010342            6 GLSRVGEAHKLFFDMKSRGH------VPNVV----SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL-PN----SLTYSVL   70 (512)
Q Consensus         6 ~~g~~~~A~~~~~~~~~~~~------~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l   70 (512)
                      ..|++++|.+++++..+...      .++..    .|+.....|...|++++|...|.+..+.... .+    ..+|+.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46889999999987765311      12211    4555556666666666666666665432100 01    2245555


Q ss_pred             HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCC---C--cchhHHHH
Q 010342           71 VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV---N--EEFACGHM  145 (512)
Q Consensus        71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l  145 (512)
                      ...|...|++++|...+.+.++..+...+......++..+...|.. |++++|+..|++.......   +  ...++..+
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  161 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA  161 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            5666666666666666666555443322222223344555555555 5555555555543321100   0  01234444


Q ss_pred             HHHHHhcCChhhHHHHHHHHH
Q 010342          146 IDSLCRSGRNHGASRVVYVMR  166 (512)
Q Consensus       146 ~~~~~~~~~~~~a~~~~~~~~  166 (512)
                      ..++...|++++|...|++..
T Consensus       162 g~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          162 SRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            444455555555555544443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.00  E-value=1.1e-08  Score=98.53  Aligned_cols=154  Identities=12%  Similarity=0.038  Sum_probs=112.4

Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHH
Q 010342          292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK  371 (512)
Q Consensus       292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  371 (512)
                      .|++++|...+++..+..  +.+...+..+...+...|++++|.+.+++.+...  +.+...+..+...+...|++++|.
T Consensus         2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            478888999998887765  5677888888889999999999999998876543  445677888888889999999999


Q ss_pred             HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 010342          372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS---GKIHEAVHFLYELV  448 (512)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~  448 (512)
                      ..+++..+.. +.+...+..+..+|...|++++|.+.++++.+.. +.+...+..+..++...   |+.++|.+.+++..
T Consensus        78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            9999988864 4567788888899999999999999999988764 55677888888888888   99999999999888


Q ss_pred             HCC
Q 010342          449 DSG  451 (512)
Q Consensus       449 ~~~  451 (512)
                      +.+
T Consensus       156 ~~~  158 (568)
T 2vsy_A          156 AQG  158 (568)
T ss_dssp             HHT
T ss_pred             hcC
Confidence            865

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.99  E-value=1e-08  Score=81.71  Aligned_cols=163  Identities=12%  Similarity=0.003  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010342          281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG  360 (512)
Q Consensus       281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  360 (512)
                      .+......+.+.|++++|...|++..+..  +.+...+..+...+...|++++|...+.+.+...   |++..+......
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~   82 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKL   82 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHH
Confidence            45566777888899999999998877654  5677888888899999999999999998865443   343333222211


Q ss_pred             -HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHH
Q 010342          361 -LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIH  438 (512)
Q Consensus       361 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~  438 (512)
                       +...+....+...+++..+.. |.+...+..+..++...|++++|...++++++....+ +...+..+...+...|+.+
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  161 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN  161 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred             HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence             122233345788888888753 4567888899999999999999999999998765322 3568888999999999999


Q ss_pred             HHHHHHHHHHH
Q 010342          439 EAVHFLYELVD  449 (512)
Q Consensus       439 ~a~~~~~~~~~  449 (512)
                      +|...|++.+.
T Consensus       162 ~A~~~y~~al~  172 (176)
T 2r5s_A          162 AIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99999987654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.99  E-value=6.6e-08  Score=79.57  Aligned_cols=176  Identities=11%  Similarity=-0.023  Sum_probs=134.5

Q ss_pred             hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC----CHHHHHHH
Q 010342          262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG----RIQEALNL  337 (512)
Q Consensus       262 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~  337 (512)
                      +|...|+...+.|   ++..+..+...|...+++++|+..|++..+.+    +...+..+...|.. +    ++++|..+
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            4555666666553   66777888888888899999999999988743    56667777777777 6    89999999


Q ss_pred             HHhhcccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCC-CChHhHHHHHHHHHh----cCCHHHHHHH
Q 010342          338 LYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCE----SNQLDEAKRF  408 (512)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~  408 (512)
                      |.+....    -++..+..+...|..    .+++++|..+|++..+.|.. .++..+..|...|..    .+++++|...
T Consensus        76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            9886532    356677778887876    88999999999999887521 126778888888888    7889999999


Q ss_pred             HHHhhcCCCCCCHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 010342          409 WDDIVWPSNIHDNYVYAAMIKGLCRS-G-----KIHEAVHFLYELVDSG  451 (512)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~  451 (512)
                      |++..+.  +.+...+..|...|... |     ++++|...|++..+.|
T Consensus       152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            9999875  23445677787777653 3     8999999999988876

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.98  E-value=1.3e-08  Score=97.93  Aligned_cols=164  Identities=13%  Similarity=-0.031  Sum_probs=123.1

Q ss_pred             cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 010342          257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN  336 (512)
Q Consensus       257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  336 (512)
                      .|++++|...+++..+.... +...+..+...+...|++++|...+++..+..  +.+...+..+...+...|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            47889999999998876533 67888999999999999999999999999876  6678899999999999999999999


Q ss_pred             HHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc---CCHHHHHHHHHHhh
Q 010342          337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQLDEAKRFWDDIV  413 (512)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~  413 (512)
                      .+++.+...  +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...   |+.++|.+.+++..
T Consensus        79 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           79 LLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999987654  4457788899999999999999999999998864 45677889999999999   99999999999998


Q ss_pred             cCCCCCCHHhHHHH
Q 010342          414 WPSNIHDNYVYAAM  427 (512)
Q Consensus       414 ~~~~~~~~~~~~~l  427 (512)
                      +.+ +.+...+..+
T Consensus       156 ~~~-p~~~~~~~~l  168 (568)
T 2vsy_A          156 AQG-VGAVEPFAFL  168 (568)
T ss_dssp             HHT-CCCSCHHHHT
T ss_pred             hcC-CcccChHHHh
Confidence            765 3333344433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.98  E-value=1e-07  Score=79.40  Aligned_cols=186  Identities=8%  Similarity=-0.084  Sum_probs=129.7

Q ss_pred             ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc-HHHHHHH
Q 010342          245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD--VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD-AVTFTTI  321 (512)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l  321 (512)
                      ..+......+...|++++|...|+.+.+..+...  ...+..+..++.+.|++++|+..|+++.+.....+. ...+..+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            3455667788999999999999999998754321  356778899999999999999999999876521222 1245555


Q ss_pred             HHHHhh------------------cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 010342          322 IFGLLN------------------VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV  383 (512)
Q Consensus       322 ~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  383 (512)
                      ..++..                  .|+.++|...|.+.+...  +-+..........          ..+...+.     
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~-----  147 (225)
T 2yhc_A           85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA-----  147 (225)
T ss_dssp             HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred             HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH-----
Confidence            555553                  578999999999977554  2222222221110          01111111     


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD---NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       384 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                         .....+...|.+.|++++|...|+++++.. +.+   ...+..+..++.+.|+.++|.+.++.+...+
T Consensus       148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence               112346778889999999999999998653 222   2468888999999999999999999888764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.96  E-value=6.5e-08  Score=84.35  Aligned_cols=164  Identities=14%  Similarity=0.090  Sum_probs=117.7

Q ss_pred             HHHHHHhhcCCHHHHHHHHHhhcccCCCCCChh----hHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----hHhHH
Q 010342          320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV----TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-AD----STTYA  390 (512)
Q Consensus       320 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~  390 (512)
                      ..+..+...|++++|...+.+........|+..    .+..+...+...+++++|...+++..+.... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            345667788888888888888665443333322    2334666667778889999999888874222 22    22688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhc----C-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hhhH
Q 010342          391 IVIDGLCESNQLDEAKRFWDDIVW----P-SNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTPN-IVCY  459 (512)
Q Consensus       391 ~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~  459 (512)
                      .+..+|...|++++|...++++.+    . +..+ ...++..+...|.+.|++++|...+++.++.    +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            888899999999999999988873    1 1122 2337788999999999999999999887752    22222 5678


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHH
Q 010342          460 NVVIDGACKLSM-KREAYQILREMR  483 (512)
Q Consensus       460 ~~l~~~~~~~g~-~~~a~~~~~~m~  483 (512)
                      ..+..++.+.|+ +++|.+.+++..
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            889999999994 699999998875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.94  E-value=8.7e-07  Score=76.39  Aligned_cols=232  Identities=10%  Similarity=0.016  Sum_probs=138.2

Q ss_pred             chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 010342          189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES--DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV  266 (512)
Q Consensus       189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  266 (512)
                      ..++|+++++.++..+ +-+...|+.--..+...|  ++++++++++.+... .+.                        
T Consensus        48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-nPk------------------------  101 (306)
T 3dra_A           48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-NEK------------------------  101 (306)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-CTT------------------------
T ss_pred             CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-Ccc------------------------
Confidence            3456777777766643 334445555555555555  666666666666543 222                        


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHH----Hhc---CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH--HHHHH
Q 010342          267 LVFMLQTQCQPDVITLNTVINGF----CKM---GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ--EALNL  337 (512)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~  337 (512)
                                 +...|+.--..+    ...   +++++++.+++.+.+..  +.+..+|+.-...+.+.|.++  ++++.
T Consensus       102 -----------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~  168 (306)
T 3dra_A          102 -----------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSF  168 (306)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             -----------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence                       223333222222    222   45666666666666554  455566655555555555555  66666


Q ss_pred             HHhhcccCCCCCChhhHHHHHHHHHccCC------HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH-HHHHHHHH
Q 010342          338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRR------VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL-DEAKRFWD  410 (512)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~  410 (512)
                      +.+++...  +-+...|+.-...+.+.+.      ++++++.++.+.... +-|...|+.+...+.+.|+. +.+..+..
T Consensus       169 ~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~  245 (306)
T 3dra_A          169 VDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSL  245 (306)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred             HHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence            66655443  3444555544444445444      777888888887764 56777787777777777764 44556666


Q ss_pred             HhhcCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHH
Q 010342          411 DIVWPS--NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVI  463 (512)
Q Consensus       411 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~  463 (512)
                      ++...+  .+.+...+..++.+|.+.|+.++|.++++.+.+. + +.....|+..+
T Consensus       246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D-pir~~yW~~~~  300 (306)
T 3dra_A          246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN-PIRSNFWDYQI  300 (306)
T ss_dssp             TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-GGGHHHHHHHH
T ss_pred             HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence            665432  2446678888888888889999999999888763 2 22444555433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.87  E-value=5.1e-08  Score=85.58  Aligned_cols=89  Identities=13%  Similarity=0.060  Sum_probs=43.6

Q ss_pred             hcCChhHHHHHHHHHHhCCC------CCChh----hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010342           41 RTGEMDVAYKVFDEMRHCGV------LPNSL----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL  110 (512)
Q Consensus        41 ~~~~~~~a~~~~~~m~~~~~------~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (512)
                      ..|++++|.+++++..+...      .++..    .|......|...|++++|...+.+..+..+...+......+|+.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35677788888887765210      12211    233344455555666666655555554433332211222344445


Q ss_pred             HHHHHccCChhHHHHHHHh
Q 010342          111 VDSLCREGYVNEVFRIAED  129 (512)
Q Consensus       111 ~~~~~~~g~~~~a~~~~~~  129 (512)
                      ...|...|++++|+..|++
T Consensus        83 g~~~~~~g~~~~A~~~~~~  101 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEK  101 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHH
Confidence            5555555555555554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.87  E-value=2.8e-07  Score=76.04  Aligned_cols=127  Identities=11%  Similarity=-0.053  Sum_probs=81.0

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 010342          318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC  397 (512)
Q Consensus       318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  397 (512)
                      +..+...+...|++++|...|.+.+     .|+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            3444555666677777777666542     4455666666666677777777777777666643 445556666667777


Q ss_pred             hcCCHHHHHHHHHHhhcCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          398 ESNQLDEAKRFWDDIVWPSNIHD----------------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       398 ~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      ..|++++|...++++.+.. +.+                ...+..+..++...|++++|.+.|++..+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            7777777777777666532 111                2566667777777777777777777776653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.86  E-value=2.9e-07  Score=75.93  Aligned_cols=128  Identities=11%  Similarity=-0.117  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC  432 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  432 (512)
                      .+..+...+...|++++|...|++..    .|+...+..+..+|...|++++|...+++..... +.+...+..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            34556677889999999999998774    5688899999999999999999999999998765 567788999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCC--------------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          433 RSGKIHEAVHFLYELVDSGVT--------------P-NIVCYNVVIDGACKLSMKREAYQILREMRKN  485 (512)
Q Consensus       433 ~~g~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  485 (512)
                      ..|++++|.+.|++..+....              | ....+..+..++...|++++|.+.+++..+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            999999999999999986422              1 1267888999999999999999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.86  E-value=1.1e-07  Score=70.59  Aligned_cols=108  Identities=9%  Similarity=0.035  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      .+......|.+.|++++|...|++.++.+ +.+...|..+..+|...|++++|+..+++.++.+ +.+...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            45666777777777777777777777654 5566677777777777777777777777777754 235667777777777


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHH
Q 010342          468 KLSMKREAYQILREMRKNGLNPDA-VTWRILDK  499 (512)
Q Consensus       468 ~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~  499 (512)
                      ..|++++|.+.|++..+  +.|+. ..+..|.+
T Consensus        93 ~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~  123 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQ--VDPSNEEAREGVRN  123 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHH
Confidence            77888888888777776  44543 34444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.85  E-value=6.5e-07  Score=77.96  Aligned_cols=166  Identities=10%  Similarity=-0.015  Sum_probs=123.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC----hhhHH
Q 010342          284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV----TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYN  355 (512)
Q Consensus       284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~  355 (512)
                      ..+..+...|++++|...+++........++..    .+..+...+...+++++|+..+.+.+....-.++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            346677888999999999999887543233322    3335677777888999999999988753322333    23688


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHh----C-CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHhhcC----CCCC-CHHhH
Q 010342          356 AVLRGLFRLRRVEEAKEVFNCMLG----I-GVVAD-STTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNIH-DNYVY  424 (512)
Q Consensus       356 ~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~  424 (512)
                      .+...|...|++++|...|+++.+    . +..+. ..++..+..+|.+.|++++|...+++.++.    +..+ -..++
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            889999999999999999999884    1 11222 237888999999999999999999987632    2122 25688


Q ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHH
Q 010342          425 AAMIKGLCRSG-KIHEAVHFLYELVD  449 (512)
Q Consensus       425 ~~l~~~~~~~g-~~~~a~~~~~~~~~  449 (512)
                      ..+..+|.+.| ++++|.+.+++...
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            89999999999 46999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.84  E-value=5e-07  Score=78.68  Aligned_cols=169  Identities=12%  Similarity=0.072  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--
Q 010342          315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI----VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV---VAD--  385 (512)
Q Consensus       315 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--  385 (512)
                      ...+...+..+...|++++|.+.+.+.+......++.    ..+..+...+...|++++|...+++..+...   .+.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            3444556667778888888888887765433221111    2233455566778889999998888875321   111  


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHhhc---CC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-
Q 010342          386 STTYAIVIDGLCESNQLDEAKRFWDDIVW---PS-NIH--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG----VTP-  454 (512)
Q Consensus       386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p-  454 (512)
                      ..+++.+...|...|++++|...++++.+   .. ..+  ...++..+...|...|++++|...+++..+..    ... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            34778888899999999999999988762   11 111  12578888889999999999999998876531    111 


Q ss_pred             ChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 010342          455 NIVCYNVVIDGACKLSMKREA-YQILREMR  483 (512)
Q Consensus       455 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~  483 (512)
                      -..+|..+...+.+.|++++| ...+++..
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            156778888999999999999 77677764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.80  E-value=4.5e-08  Score=75.00  Aligned_cols=95  Identities=7%  Similarity=-0.016  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      .+..+...+.+.|++++|...|++++..+ +.+...|..+..+|...|++++|+..|++.++.. +.++..|..+..++.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence            44455555555555666666555555443 3445555555555556666666666665555543 124455555555666


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 010342          468 KLSMKREAYQILREMRK  484 (512)
Q Consensus       468 ~~g~~~~a~~~~~~m~~  484 (512)
                      +.|++++|.+.|++..+
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66666666666665555

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.79  E-value=2.1e-07  Score=73.13  Aligned_cols=129  Identities=10%  Similarity=-0.048  Sum_probs=95.4

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                      ..+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            345566667777888888888888877753 4466777888888888888888888888887654 55677788888888


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 010342          432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNV--VIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       432 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      ...|++++|...+++..+... .+...+..  .+..+...|++++|.+.+....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            888888899888888887642 24444533  3344677888888888887664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.79  E-value=1.6e-07  Score=69.74  Aligned_cols=98  Identities=10%  Similarity=-0.031  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                      ..+......|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...++++++.+ +.+...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            345566777778888888888888877754 5566777778888888888888888888887664 55667788888888


Q ss_pred             HhcCCHHHHHHHHHHHHHCC
Q 010342          432 CRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       432 ~~~g~~~~a~~~~~~~~~~~  451 (512)
                      ...|++++|.+.|++.++..
T Consensus        92 ~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHHHHHHC
Confidence            88888888888888887753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.79  E-value=2.6e-08  Score=76.57  Aligned_cols=95  Identities=9%  Similarity=-0.065  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      .+..+...+...|++++|...|++++..+ +.+...|..+..+|...|++++|...|++.++.. +.+...+..+..++.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence            44445555555555555555555555443 3345555555555555566666666555555543 124445555555555


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 010342          468 KLSMKREAYQILREMRK  484 (512)
Q Consensus       468 ~~g~~~~a~~~~~~m~~  484 (512)
                      ..|++++|.+.+++..+
T Consensus       101 ~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            56666666655555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.76  E-value=5.5e-06  Score=72.18  Aligned_cols=232  Identities=8%  Similarity=0.066  Sum_probs=148.1

Q ss_pred             ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc-C-CHHHHH
Q 010342          259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-G-RIQEAL  335 (512)
Q Consensus       259 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~  335 (512)
                      ..++|+.++..++...+. +...|+.--..+...| .+++++..++.+....  +.+..+|+.-...+... + ++++++
T Consensus        69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence            344566666666665433 4555666666666666 4888888888887766  56677777666666555 5 677888


Q ss_pred             HHHHhhcccCCCCCChhhHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC------
Q 010342          336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE--------EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------  401 (512)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------  401 (512)
                      +.+.+++...  +-+...|+.-.-.+.+.+.++        ++++.++++.+.. +-|...|+....++.+.+.      
T Consensus       146 ~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~  222 (349)
T 3q7a_A          146 EYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR  222 (349)
T ss_dssp             HHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence            8887766443  445555554444444444444        7888888888764 5577777777777777765      


Q ss_pred             -HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCC
Q 010342          402 -LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI--------------------HEAVHFLYELVDSG-----VTPN  455 (512)
Q Consensus       402 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~p~  455 (512)
                       ++++.+.+++++... +.|...|+.+-..+.+.|+.                    ....++..++...+     -.++
T Consensus       223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  301 (349)
T 3q7a_A          223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV  301 (349)
T ss_dssp             HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred             HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence             678888888887664 66777887777777666553                    23333333333321     1346


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 010342          456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILD  498 (512)
Q Consensus       456 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~  498 (512)
                      ...+..++..|...|+.++|.++++.+.+. +.|- ..-|+-..
T Consensus       302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~  344 (349)
T 3q7a_A          302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRR  344 (349)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHH
Confidence            677888899999999999999999998643 3443 33444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.76  E-value=8.1e-08  Score=80.72  Aligned_cols=199  Identities=9%  Similarity=-0.071  Sum_probs=141.9

Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH-------HHHHhhcCCHHHHHHHHHhhcccCCCCCC-------------
Q 010342          291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTI-------IFGLLNVGRIQEALNLLYQVMPQRGYSPG-------------  350 (512)
Q Consensus       291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------  350 (512)
                      ..++...|.+.|.++....  +.....|..+       ...+...++..+++..+.+.+   ++.|+             
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~   92 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYG   92 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTC
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCccc
Confidence            5788899999999888776  5566677666       445555445555555554432   22222             


Q ss_pred             ---------hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-
Q 010342          351 ---------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD-  420 (512)
Q Consensus       351 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-  420 (512)
                               ......+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|. 
T Consensus        93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~  169 (282)
T 4f3v_A           93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL  169 (282)
T ss_dssp             CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred             ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence                     1123345667888999999999999888754  443366666678899999999999998775432 121 


Q ss_pred             -HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342          421 -NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL  497 (512)
Q Consensus       421 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  497 (512)
                       ...+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|...|+++...  .|+...+..|
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL  247 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence             33677888999999999999999999885433253  346777888999999999999999999984  5665555555


Q ss_pred             HH
Q 010342          498 DK  499 (512)
Q Consensus       498 ~~  499 (512)
                      ..
T Consensus       248 ~~  249 (282)
T 4f3v_A          248 KD  249 (282)
T ss_dssp             HC
T ss_pred             hC
Confidence            43

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.74  E-value=2.3e-07  Score=69.80  Aligned_cols=96  Identities=8%  Similarity=0.015  Sum_probs=51.4

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      ..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence            344455555555555555555555555432 3344455555555555555555555555555542 22444555555555


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 010342          467 CKLSMKREAYQILREMRK  484 (512)
Q Consensus       467 ~~~g~~~~a~~~~~~m~~  484 (512)
                      .+.|++++|.+.+++..+
T Consensus        95 ~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            556666666666555554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.74  E-value=3.2e-07  Score=68.01  Aligned_cols=112  Identities=11%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      ..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            445555566666666666666666665443 3345556666666666666666666666666543 22455566666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhh
Q 010342          467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH  501 (512)
Q Consensus       467 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  501 (512)
                      ...|++++|...++++.+.. +.+...+..+..++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  121 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            66666666666666665532 22333444444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.74  E-value=8.4e-08  Score=76.50  Aligned_cols=118  Identities=8%  Similarity=0.077  Sum_probs=52.9

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH-HHhcCCH--HHH
Q 010342          364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG-LCRSGKI--HEA  440 (512)
Q Consensus       364 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~a  440 (512)
                      .|++++|...+++..+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            344444444444444432 2334444445555555555555555555544332 2233444444444 4444554  555


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       441 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            55555544432 11334444445555555555555555555444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.74  E-value=1.5e-07  Score=76.97  Aligned_cols=126  Identities=10%  Similarity=-0.049  Sum_probs=85.0

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcC
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC----GVLP-NSLTYSVLVRGVLRTR   78 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~   78 (512)
                      ++..|++++|.+.++.+... +.....++..+...+...|++++|...+++....    +..| ...++..+...+...|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            46789999999966655442 3345778899999999999999999999988661    1122 3346777778888899


Q ss_pred             ChhhHHHHHHHHHHHhhhcCCCC-cchHhHHHHHHHHHccCChhHHHHHHHhc
Q 010342           79 DVERANVLMFKLWERMKEEEDLS-VNNAAFANLVDSLCREGYVNEVFRIAEDM  130 (512)
Q Consensus        79 ~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  130 (512)
                      ++++|...+.+.++.....++.. .....+..+...+...|++++|...+++.
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999998888877665432121 23345566666666677777776666554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.73  E-value=1.4e-07  Score=72.23  Aligned_cols=100  Identities=10%  Similarity=-0.029  Sum_probs=81.8

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK  429 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  429 (512)
                      +...+..+...+.+.|++++|...|+++.+.. |.+...|..+..+|...|++++|...|+++++.. +.+...|..+..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence            34566777778888899999999998888864 5567788888888889999999999998888765 556778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCC
Q 010342          430 GLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       430 ~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      +|...|++++|...|++.++..
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Confidence            8999999999999998888763

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.73  E-value=3.2e-07  Score=68.92  Aligned_cols=118  Identities=8%  Similarity=-0.072  Sum_probs=83.7

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK  429 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  429 (512)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            45566667777777888888888888777653 4456677777778888888888888888877654 446677777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010342          430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS  470 (512)
Q Consensus       430 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  470 (512)
                      ++...|++++|.+.+++..+.. +.+...+..+...+.+.|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            8888888888888888877653 224455666666665544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.71  E-value=4.1e-07  Score=76.48  Aligned_cols=194  Identities=10%  Similarity=-0.061  Sum_probs=129.0

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc----------
Q 010342           41 RTGEMDVAYKVFDEMRHCGVLPNSLTYSVL-------VRGVLRTRDVERANVLMFKLWERMKEEEDLSVN----------  103 (512)
Q Consensus        41 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------  103 (512)
                      ..+++..|++.|.++.+.. +-....|..+       ...+...+...++...+...+..-+..-....+          
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            5788999999999998863 2355667766       344444444444433333332211121111111          


Q ss_pred             -----hHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--cch
Q 010342          104 -----NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS--LVS  176 (512)
Q Consensus       104 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~--~~~  176 (512)
                           ....-.+...+...|++++|.++|+.+...++  +......+...+.+.+++++|+..|+...... .|.  ...
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a  173 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA  173 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence                 22334566778889999999999999887663  33255556678889999999999997554321 111  236


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHhCCCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010342          177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS--EHTYKVLVEGLCGESDLEKARKVLQFMLSK  238 (512)
Q Consensus       177 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  238 (512)
                      +..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            77788889999999999999998875433243  345566777788899999999999988764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.71  E-value=2.3e-07  Score=80.07  Aligned_cols=191  Identities=9%  Similarity=-0.014  Sum_probs=113.1

Q ss_pred             HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342          247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL  326 (512)
Q Consensus       247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (512)
                      +..+...+...|++++|...+....+..+ .+...+..+..++.+.|++++|...+++..+..  +.+...+..+..++.
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            7 LKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence            33444445555555555555555554432 266777888888888888888888888888765  567778888888888


Q ss_pred             hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH
Q 010342          327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK  406 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  406 (512)
                      ..|++++|...|.+.+....-  +...+...+....+   ...+.. +........+.+......+...+  .|+.++|.
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~  155 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKE--QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRLI--AAEREREL  155 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH--TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence            888888888888776643211  11111111111111   111111 22223333455555555554332  67888888


Q ss_pred             HHHHHhhcCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 010342          407 RFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKIHEAVHFLYELVD  449 (512)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~  449 (512)
                      +.++...+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus       156 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          156 EECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             TTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            8888877653 33344444444444444 667888888887764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.71  E-value=1.6e-07  Score=81.05  Aligned_cols=194  Identities=9%  Similarity=0.029  Sum_probs=133.0

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV  357 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  357 (512)
                      +...+..+...+.+.|++++|+..|++.....  +.+...+..+..++...|++++|...+.+.+...  +.+...+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l   78 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL   78 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            45677788889999999999999999998865  5688899999999999999999999999977543  4456788889


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010342          358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI  437 (512)
Q Consensus       358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  437 (512)
                      ..++...|++++|...|++..+.. +.+...+...+....+.   .++.. +........+.+......+...  ..|+.
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~  151 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAER  151 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence            999999999999999999988742 11111111122222111   11111 1222223334555554444333  26889


Q ss_pred             HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 010342          438 HEAVHFLYELVDSGVTPN-IVCYNVVIDGACKL-SMKREAYQILREMRK  484 (512)
Q Consensus       438 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~  484 (512)
                      ++|.+.+++..+.  .|+ ......+...+.+. +.+++|.++|..+.+
T Consensus       152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999887765  444 33344444444444 678889999988764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.71  E-value=5.5e-07  Score=66.66  Aligned_cols=114  Identities=10%  Similarity=0.164  Sum_probs=74.9

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010342          351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG  430 (512)
Q Consensus       351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  430 (512)
                      ...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            3455566666777777777777777776643 3455666777777777777777777777776543 4456677777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       431 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      +...|++++|...++++.+.. +.+...+..+...+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            777788888888777777653 224444544444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.71  E-value=2.4e-07  Score=69.36  Aligned_cols=94  Identities=12%  Similarity=0.100  Sum_probs=39.7

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 010342          354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR  433 (512)
Q Consensus       354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  433 (512)
                      +..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..... +.+...+..+...+..
T Consensus        15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence            3333444444444444444444444321 2233344444444444444444444444444322 2233344444444444


Q ss_pred             cCCHHHHHHHHHHHHH
Q 010342          434 SGKIHEAVHFLYELVD  449 (512)
Q Consensus       434 ~g~~~~a~~~~~~~~~  449 (512)
                      .|++++|...+++..+
T Consensus        93 ~~~~~~A~~~~~~~~~  108 (131)
T 2vyi_A           93 LNKHVEAVAYYKKALE  108 (131)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHh
Confidence            4444444444444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.70  E-value=5.6e-07  Score=70.68  Aligned_cols=128  Identities=10%  Similarity=0.016  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 010342          317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL  396 (512)
Q Consensus       317 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  396 (512)
                      .+..+...+...|++++|...+.+.+...  +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            34455555666666666666666654432  3345556666666666777777777777666643 44556667777777


Q ss_pred             HhcCCHHHHHHHHHHhhcCCCCCCHHhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 010342          397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAA--MIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       397 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      ...|++++|...++++.+.. +.+...+..  ++..+...|++++|...+.+..
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            77777777777777776543 334444432  3333666677777777776554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.69  E-value=2.5e-07  Score=68.87  Aligned_cols=108  Identities=12%  Similarity=0.036  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----hhhHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT--PN----IVCYNV  461 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~----~~~~~~  461 (512)
                      .+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.+++.++....  ++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            45566777777777777777777777654 455667777777777778888887777777653211  11    134566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 010342          462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD  498 (512)
Q Consensus       462 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~  498 (512)
                      +..++...|++++|++.|++...  ..||+.+...|-
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~  123 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVK  123 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHH
Confidence            67777778888888888887776  456666555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.69  E-value=9.1e-07  Score=77.02  Aligned_cols=170  Identities=10%  Similarity=-0.009  Sum_probs=121.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC----h
Q 010342          280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA----VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----I  351 (512)
Q Consensus       280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~  351 (512)
                      ..+...+..+...|++++|.+.+.+..+.....++.    ..+..+...+...|++++|+..+.+.+.......+    .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            344556777888899999999998877654211211    22344556677888999999999887643221222    3


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC----CCC-C
Q 010342          352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPS----NIH-D  420 (512)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~  420 (512)
                      .+++.+...|...|++++|...|++..+.  ..+.+    ..++..+..+|...|++++|...+++.++..    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            47788889999999999999999988731  11111    2578889999999999999999999876421    111 2


Q ss_pred             HHhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 010342          421 NYVYAAMIKGLCRSGKIHEA-VHFLYELVD  449 (512)
Q Consensus       421 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~  449 (512)
                      ..++..+..+|...|++++| ...+++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            56788899999999999999 777777653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.68  E-value=3.3e-07  Score=68.59  Aligned_cols=119  Identities=8%  Similarity=0.002  Sum_probs=100.2

Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010342          385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID  464 (512)
Q Consensus       385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  464 (512)
                      +...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            45567888899999999999999999998764 5577889999999999999999999999998864 335778899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCC
Q 010342          465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN  506 (512)
Q Consensus       465 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  506 (512)
                      .+...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            9999999999999999998753 3356677777777776664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.65  E-value=1.1e-07  Score=72.48  Aligned_cols=96  Identities=9%  Similarity=0.027  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC  432 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  432 (512)
                      .+..+...+.+.|++++|...|+...... +.+...+..+..+|...|++++|...+++++..+ +.+...+..+..++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            33444445555556666666655555542 3344455555555555555555555555555443 334445555555555


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 010342          433 RSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       433 ~~g~~~~a~~~~~~~~~~  450 (512)
                      ..|++++|.+.|++.++.
T Consensus        98 ~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            555555555555555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.65  E-value=1.7e-07  Score=74.65  Aligned_cols=121  Identities=7%  Similarity=0.066  Sum_probs=73.5

Q ss_pred             hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH-HHhcCCH--H
Q 010342          327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESNQL--D  403 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~  403 (512)
                      ..|++++|...+.+.+...  +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++  +
T Consensus        22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            3455556666665544333  3344556666666666677777777766666543 3345556666666 5666776  7


Q ss_pred             HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      +|...++++++.. +.+...+..+...+...|++++|...++++.+..
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            7777777776553 4455666677777777777777777777777653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.64  E-value=1.7e-07  Score=76.56  Aligned_cols=160  Identities=9%  Similarity=-0.073  Sum_probs=90.4

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCC
Q 010342           40 CRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY  119 (512)
Q Consensus        40 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  119 (512)
                      ...|++++|.+.++.+... ......++..+...+...|++++|...+.+.++.............++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4678999999966555432 123556788888889999999999999888887665543333444566667777777777


Q ss_pred             hhHHHHHHHhcCCC----CCCC--cchhHHHHHHHHHhcCChhhHHHHHHHHHHcC---CCCC--cchHHHHHHHHhccC
Q 010342          120 VNEVFRIAEDMPQG----KSVN--EEFACGHMIDSLCRSGRNHGASRVVYVMRKRG---LTPS--LVSYNSIVHGLCKHG  188 (512)
Q Consensus       120 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---~~p~--~~~~~~l~~~~~~~~  188 (512)
                      +++|.+.+++....    +..+  ....+..+...+...|++++|...+++.....   ..+.  ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77777776654332    1011  12334445555555666666665555544210   0000  112334444444555


Q ss_pred             chhHHHHHHHHH
Q 010342          189 GCMRAYQLLEEG  200 (512)
Q Consensus       189 ~~~~a~~~~~~~  200 (512)
                      ++++|.+.+++.
T Consensus       162 ~~~~A~~~~~~a  173 (203)
T 3gw4_A          162 NLLEAQQHWLRA  173 (203)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            555555554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.64  E-value=2.2e-07  Score=71.34  Aligned_cols=99  Identities=15%  Similarity=0.059  Sum_probs=77.3

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK  429 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  429 (512)
                      +...+..+...+...|++++|...|+...... +.+...+..+..+|...|++++|...|++++..+ +.+...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            34556667777788888888888888887754 5567777888888888888888888888887654 556677788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 010342          430 GLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       430 ~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +|...|++++|.+.|++.++.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            888888888888888888765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.63  E-value=6.5e-07  Score=66.56  Aligned_cols=96  Identities=10%  Similarity=0.076  Sum_probs=62.9

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      ..+..+...+...|++++|...|++.++.. +.+...|..+..++...|++++|...+++.++.. +.+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            345555666666777777777777666543 4455666667777777777777777777766654 22455666677777


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 010342          467 CKLSMKREAYQILREMRK  484 (512)
Q Consensus       467 ~~~g~~~~a~~~~~~m~~  484 (512)
                      ...|++++|.+.+++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            777777777777776655

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.62  E-value=3.2e-05  Score=67.42  Aligned_cols=175  Identities=9%  Similarity=-0.055  Sum_probs=110.3

Q ss_pred             HhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccC-chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhcc-C-CHH
Q 010342          150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG-GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE-S-DLE  226 (512)
Q Consensus       150 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~  226 (512)
                      .+.+..++|+++++.+...++. +..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+... + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            3445556788888888876443 5566776666666666 4888888888887754 45666666655555554 5 777


Q ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChh--------hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----
Q 010342          227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT--------ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR----  294 (512)
Q Consensus       227 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  294 (512)
                      ++.++++.+.+. .+.+...|+.-.-.+...+.++        ++++.+..+++..+. |...|+.....+.+.++    
T Consensus       143 ~EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          143 SEIEYIHGSLLP-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHTSS-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence            888888887753 3444455555444444444444        666777777766544 66666666666666654    


Q ss_pred             ---HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342          295 ---IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR  330 (512)
Q Consensus       295 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (512)
                         ++++++.+++.....  +.|...|+-+-..+.+.|.
T Consensus       221 ~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence               567777777666654  5566666655544444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.62  E-value=7.3e-07  Score=79.12  Aligned_cols=94  Identities=4%  Similarity=-0.108  Sum_probs=60.5

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      ..|..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|...|++.++.. +.+...+..+..++
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            456666666777777777777777766554 4456666667777777777777777777766653 22455666666677


Q ss_pred             HhcCCHHHH-HHHHHHH
Q 010342          467 CKLSMKREA-YQILREM  482 (512)
Q Consensus       467 ~~~g~~~~a-~~~~~~m  482 (512)
                      .+.|++++| ..+++.|
T Consensus       275 ~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          275 QRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            777776666 3345544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.61  E-value=1.5e-06  Score=63.44  Aligned_cols=96  Identities=15%  Similarity=0.066  Sum_probs=63.0

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      ..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            345556666666777777777777666543 3455666666677777777777777777766653 22455666677777


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 010342          467 CKLSMKREAYQILREMRK  484 (512)
Q Consensus       467 ~~~g~~~~a~~~~~~m~~  484 (512)
                      ...|++++|.+.+++..+
T Consensus        83 ~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            777777777777777665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.56  E-value=5.4e-07  Score=68.64  Aligned_cols=97  Identities=8%  Similarity=-0.078  Sum_probs=72.2

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010342          386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG  465 (512)
Q Consensus       386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  465 (512)
                      ...+..+...+...|++++|...|++++..+ +.+...|..+..++...|++++|...|++.++.. +.+...+..+..+
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   95 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence            3455566677777888888888888877654 5566777778888888888888888888877764 2356667777788


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 010342          466 ACKLSMKREAYQILREMRK  484 (512)
Q Consensus       466 ~~~~g~~~~a~~~~~~m~~  484 (512)
                      +...|++++|.+.+++..+
T Consensus        96 ~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            8888888888888887765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.55  E-value=1.3e-06  Score=64.90  Aligned_cols=97  Identities=11%  Similarity=-0.002  Sum_probs=73.8

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                      ..+..+...+.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...+++.++.+ +.+...+..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            345566667777888888888888877754 4566777888888888888888888888887654 55667778888888


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 010342          432 CRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       432 ~~~g~~~~a~~~~~~~~~~  450 (512)
                      ...|++++|...|++..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            8888888888888887764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.55  E-value=1.4e-06  Score=62.94  Aligned_cols=95  Identities=12%  Similarity=0.044  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP--NIVCYNVVIDG  465 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~  465 (512)
                      .+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.+++..+.. +.  +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence            33444444444444444444444444332 2333444444445555555555555555544432 11  23444444455


Q ss_pred             HHhc-CCHHHHHHHHHHHHH
Q 010342          466 ACKL-SMKREAYQILREMRK  484 (512)
Q Consensus       466 ~~~~-g~~~~a~~~~~~m~~  484 (512)
                      +... |++++|.+.+++..+
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHhCCHHHHHHHHHHHhh
Confidence            5555 555555555555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.54  E-value=3.1e-06  Score=61.73  Aligned_cols=98  Identities=9%  Similarity=-0.011  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                      ..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            345556666677777777777777776643 3456667777777777777777777777776553 44566777777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCC
Q 010342          432 CRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       432 ~~~g~~~~a~~~~~~~~~~~  451 (512)
                      ...|++++|.+.+++..+.+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhhHHHHHHHHHHHHHcC
Confidence            77778888887777777653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.54  E-value=1.7e-06  Score=76.71  Aligned_cols=96  Identities=8%  Similarity=0.030  Sum_probs=71.1

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010342          351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG  430 (512)
Q Consensus       351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  430 (512)
                      ...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+++++.. +.+...+..+..+
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~  273 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            3567777777888888888888888887754 4566777888888888888888888888887654 4566677778888


Q ss_pred             HHhcCCHHHH-HHHHHHHH
Q 010342          431 LCRSGKIHEA-VHFLYELV  448 (512)
Q Consensus       431 ~~~~g~~~~a-~~~~~~~~  448 (512)
                      +...|+.++| ...+++|.
T Consensus       274 ~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888777 44555554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.53  E-value=5.3e-05  Score=65.72  Aligned_cols=192  Identities=10%  Similarity=0.042  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCC-HHHHH
Q 010342          295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG--RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR-VEEAK  371 (512)
Q Consensus       295 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~  371 (512)
                      +++++.+++.+....  +.+..+|+.-...+...+  .+++++..+.+++...  +-+...|+.-.-.+...|. +++++
T Consensus        90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel  165 (331)
T 3dss_A           90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEEL  165 (331)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            455566666655544  445555555555555545  3566666666655443  3344455444444445555 46666


Q ss_pred             HHHHHHHhCCCCCChHhHHHHHHHHHhc--------------CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc---
Q 010342          372 EVFNCMLGIGVVADSTTYAIVIDGLCES--------------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS---  434 (512)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  434 (512)
                      ..++.+.+.. +-|...|+.....+...              +.++++.+.+...+... +.|...|+.+-..+.+.   
T Consensus       166 ~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~  243 (331)
T 3dss_A          166 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR  243 (331)
T ss_dssp             HHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence            6666666643 34555555544444433              34677777777777654 56777777665555554   


Q ss_pred             --------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHH
Q 010342          435 --------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA-----CKLSMKREAYQILREMRKNGLNPDA-VTWRIL  497 (512)
Q Consensus       435 --------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l  497 (512)
                              +.++++++.++++.+.  .|+. .|..+..+.     ...|..+++..++.++.+  +.|.. .-|.-|
T Consensus       244 ~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~  315 (331)
T 3dss_A          244 CELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDL  315 (331)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHH
Confidence                    3577888888888876  3443 344332222     246777888889999887  45543 344444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=5.5e-06  Score=63.42  Aligned_cols=113  Identities=10%  Similarity=-0.009  Sum_probs=74.3

Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 010342          385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD----NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN  460 (512)
Q Consensus       385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  460 (512)
                      +...+..+...+...|++++|...|++..+..  |+    ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            44456666666777777777777777776543  33    4566777777777777777777777777653 22556677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhc
Q 010342          461 VVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG  502 (512)
Q Consensus       461 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~  502 (512)
                      .+..++...|++++|.+.+++..+.  .|+ ...+..+.++..
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHh
Confidence            7777777788888888888777763  343 444544444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.52  E-value=1.4e-06  Score=62.96  Aligned_cols=102  Identities=15%  Similarity=0.055  Sum_probs=89.4

Q ss_pred             CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CHHhHHH
Q 010342          349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAA  426 (512)
Q Consensus       349 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~  426 (512)
                      .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.  +...+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~   81 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA   81 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence            345677888889999999999999999998864 5567788999999999999999999999998764 44  6788999


Q ss_pred             HHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 010342          427 MIKGLCRS-GKIHEAVHFLYELVDSGV  452 (512)
Q Consensus       427 l~~~~~~~-g~~~~a~~~~~~~~~~~~  452 (512)
                      +..++... |++++|.+.+.+..+...
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            99999999 999999999999988753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.51  E-value=6.1e-06  Score=76.42  Aligned_cols=164  Identities=10%  Similarity=0.037  Sum_probs=103.6

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCCh----------------HhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNV----------------VSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSL   65 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~   65 (512)
                      .+.+.|++++|++.|..+.+.......                .++..++..|.+.|++++|.+.+..+...- ..++..
T Consensus        13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~   92 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK   92 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence            356789999999999999887433211                236788999999999999999998876521 112221


Q ss_pred             ----hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCC----CC-C
Q 010342           66 ----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG----KS-V  136 (512)
Q Consensus        66 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~  136 (512)
                          +.+.+...+...|+.+.+..++.+.....+..........++..+...+...|++++|..+++++...    +. .
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  172 (434)
T 4b4t_Q           93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP  172 (434)
T ss_dssp             HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence                22333344455788888888888877766665454445566667777777777777777776654321    11 1


Q ss_pred             CcchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010342          137 NEEFACGHMIDSLCRSGRNHGASRVVYVMR  166 (512)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (512)
                      ....++..++..|...|++++|...++...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          173 SLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            112344445555555555555555555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.51  E-value=1.2e-07  Score=77.16  Aligned_cols=95  Identities=13%  Similarity=-0.020  Sum_probs=50.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      ..+..+..+|...|++++|...++++++.. +.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence            445555666666666666666666665543 3455566666666666666666666666666543 22445555555666


Q ss_pred             HhcCCHHHHH-HHHHHHH
Q 010342          467 CKLSMKREAY-QILREMR  483 (512)
Q Consensus       467 ~~~g~~~~a~-~~~~~m~  483 (512)
                      ...++.+++. ..+..|.
T Consensus       167 ~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            5555555554 3344443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.49  E-value=1.8e-06  Score=64.46  Aligned_cols=108  Identities=7%  Similarity=0.043  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV--TPN----IVCYNV  461 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~  461 (512)
                      .+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+...  .++    ..++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            44555555566666666666666655443 33455555666666666666666666666554321  111    445556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 010342          462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD  498 (512)
Q Consensus       462 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~  498 (512)
                      +...+...|++++|.+.++++.+.  .|+...+..+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~  119 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ  119 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence            666666666666666666666652  34544444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.48  E-value=3.5e-06  Score=63.60  Aligned_cols=96  Identities=8%  Similarity=-0.038  Sum_probs=45.3

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010342          386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG  465 (512)
Q Consensus       386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  465 (512)
                      ...+..+...+...|++++|...+++.+... +.+...+..+..++...|++++|...+++.++.. +.+...|..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence            3344444444445555555555555444332 2334444445555555555555555555544432 1134444445555


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 010342          466 ACKLSMKREAYQILREMR  483 (512)
Q Consensus       466 ~~~~g~~~~a~~~~~~m~  483 (512)
                      +...|++++|...+++..
T Consensus        87 ~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            555555555555555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.47  E-value=1.4e-06  Score=68.33  Aligned_cols=100  Identities=8%  Similarity=-0.030  Sum_probs=80.0

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK  429 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  429 (512)
                      +...+..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|...++++++.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            45567777788888888888888888888754 4467778888888888888888888888887765 556778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCC
Q 010342          430 GLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       430 ~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      +|...|++++|...|++.++..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhC
Confidence            8888888888888888887753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.47  E-value=1.5e-06  Score=63.85  Aligned_cols=94  Identities=11%  Similarity=-0.072  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342          389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK  468 (512)
Q Consensus       389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  468 (512)
                      +..+...+.+.|++++|...++++++.. +.+...|..+..++...|++++|+..|++.++..+ .+...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            3444555666666666666666666543 44555666666666666666666666666666532 245556666666666


Q ss_pred             cCCHHHHHHHHHHHHH
Q 010342          469 LSMKREAYQILREMRK  484 (512)
Q Consensus       469 ~g~~~~a~~~~~~m~~  484 (512)
                      .|++++|...+++..+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           98 EHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666666654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.46  E-value=2.7e-06  Score=69.03  Aligned_cols=157  Identities=9%  Similarity=-0.093  Sum_probs=101.9

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC--------------hhhH
Q 010342          289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG--------------IVTY  354 (512)
Q Consensus       289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~  354 (512)
                      ....|+++.+.+.++......  ......+..+...+...|++++|+..|.+.+....-.|+              ...+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             --------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            344466666666665332211  234556777788888899999999999887754432331              1577


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 010342          355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS  434 (512)
Q Consensus       355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  434 (512)
                      ..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence            778888888999999999998888864 5567788888888999999999999998887654 45666777777777777


Q ss_pred             CCHHHHH-HHHHHHHH
Q 010342          435 GKIHEAV-HFLYELVD  449 (512)
Q Consensus       435 g~~~~a~-~~~~~~~~  449 (512)
                      ++.+++. ..+..+..
T Consensus       170 ~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          170 KEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHC-----------
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            7666665 44555544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.45  E-value=2.8e-06  Score=63.10  Aligned_cols=104  Identities=11%  Similarity=0.113  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCC----HHhHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHD----NYVYAA  426 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~  426 (512)
                      .+..+...+.+.|++++|+..|++..+.. |.+...|..+..+|...|++++|+..+++.++...  .++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            45566677777777777777777777653 44566777777777778888888777777764221  111    235666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 010342          427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY  459 (512)
Q Consensus       427 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  459 (512)
                      +..++...|++++|++.|++.++.  .|++.+.
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~  119 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV  119 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence            777788888888888888887764  4555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.45  E-value=8.2e-06  Score=61.50  Aligned_cols=100  Identities=12%  Similarity=-0.053  Sum_probs=75.3

Q ss_pred             CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342          349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI  428 (512)
Q Consensus       349 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  428 (512)
                      .+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            345667777777778888888888888777754 4456677778888888888888888888877654 45667778888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 010342          429 KGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       429 ~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .++...|++++|...|++..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            8888888888888888877754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.44  E-value=1e-05  Score=74.83  Aligned_cols=201  Identities=7%  Similarity=-0.074  Sum_probs=125.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCC
Q 010342           36 IHGYCRTGEMDVAYKVFDEMRHCGVLPNS----------------LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED   99 (512)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   99 (512)
                      ...+.+.|++++|++.|.++.+.......                .++..+...|...|++++|.+.+.++....+....
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            45678899999999999999885322111                13677888899999999998888877766544322


Q ss_pred             CCcchHhHHHHHHHHHccCChhHHHHHHHhcCC----CC-CCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc--CCC-
Q 010342          100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ----GK-SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR--GLT-  171 (512)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~-  171 (512)
                      ......+.+.+...+...|+.++|..+++....    .+ ......++..+...+...|++++|..+++.+...  +.. 
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            112223344444555567788888777766432    11 1122345666777777888888888777766542  111 


Q ss_pred             -C-CcchHHHHHHHHhccCchhHHHHHHHHHHhC----CCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010342          172 -P-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLPS--EHTYKVLVEGLCGESDLEKARKVLQFML  236 (512)
Q Consensus       172 -p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  236 (512)
                       | ...++..++..|...|++++|..++++....    +.++.  ...+..+...+...|+++.|...|....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             1 1236667777777777777777777766532    11111  2345555666667777777776666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.42  E-value=4e-06  Score=65.63  Aligned_cols=100  Identities=10%  Similarity=0.022  Sum_probs=68.6

Q ss_pred             CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 010342          313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV  392 (512)
Q Consensus       313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  392 (512)
                      .+...+..+...+...|++++|+..|.+.+...  +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l   85 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            455666667777777777777777777766443  3355666677777777777777777777777653 4456667777


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhcC
Q 010342          393 IDGLCESNQLDEAKRFWDDIVWP  415 (512)
Q Consensus       393 ~~~~~~~g~~~~a~~~~~~~~~~  415 (512)
                      ..+|...|++++|...|++.++.
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh
Confidence            77777777777777777777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.41  E-value=2.2e-06  Score=63.97  Aligned_cols=111  Identities=9%  Similarity=0.122  Sum_probs=73.2

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCC----HHhHH
Q 010342          352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHD----NYVYA  425 (512)
Q Consensus       352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~  425 (512)
                      ..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.....  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345556666677777777777777776643 44566677777777777777777777777764321  111    55677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010342          426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG  465 (512)
Q Consensus       426 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  465 (512)
                      .+..++...|++++|.+.|++..+..  |+...+..+...
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~  121 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence            77788888888888888888877753  455444444333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.40  E-value=5.2e-06  Score=61.83  Aligned_cols=92  Identities=12%  Similarity=-0.028  Sum_probs=52.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHH
Q 010342          391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN---IVCYNVVID  464 (512)
Q Consensus       391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~  464 (512)
                      .+...+...|++++|...++.+.+.. +.+.   ..+..+..++...|++++|...++++.+..+. +   ...+..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence            34445555666666666666655432 2222   35555666666666666666666666654311 2   344555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 010342          465 GACKLSMKREAYQILREMRK  484 (512)
Q Consensus       465 ~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ++...|++++|...++++.+
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666665

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=1.1e-05  Score=61.59  Aligned_cols=98  Identities=15%  Similarity=0.052  Sum_probs=71.5

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA  425 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  425 (512)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            4455666677777777888888877777764  344    5567777777888888888888888777653 44566777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          426 AMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       426 ~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .+..++...|++++|...|++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            7778888888888888888887765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.35  E-value=3.8e-06  Score=61.71  Aligned_cols=96  Identities=14%  Similarity=-0.013  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC  432 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  432 (512)
                      .+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++.++.. +.+...+..+..++.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            45556677788889999999998888754 5567788888888888999999999998888765 556778888888888


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 010342          433 RSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       433 ~~g~~~~a~~~~~~~~~~  450 (512)
                      ..|++++|...+++.++.
T Consensus        97 ~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            889999999998888765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.33  E-value=0.00013  Score=63.23  Aligned_cols=195  Identities=11%  Similarity=0.076  Sum_probs=142.0

Q ss_pred             hcCCH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC----------HHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010342          291 KMGRI-EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR----------IQEALNLLYQVMPQRGYSPGIVTYNAVLR  359 (512)
Q Consensus       291 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  359 (512)
                      +.|.+ ++|+..++.+...+  +.+...|+.--..+...+.          +++++..+..++...  +-+..+|+.-.-
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~w  116 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW  116 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            34444 46888888888765  4555555544333333222          578888888877554  456667776666


Q ss_pred             HHHccC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc--
Q 010342          360 GLFRLR--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ-LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS--  434 (512)
Q Consensus       360 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  434 (512)
                      .+.+.+  .+++++.+++.+.+.. +-|...|+.-..++...|. ++++.+.+.++++.+ +.|...|+.....+...  
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence            666666  4899999999999875 6677888888888888888 589999999999876 66788888777776655  


Q ss_pred             ------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCh
Q 010342          435 ------------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL-----------SMKREAYQILREMRKNGLNPDA  491 (512)
Q Consensus       435 ------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~  491 (512)
                                  +.++++++.+.+.+... +-|...|+.+-..+.+.           +.++++++.++++.+  +.||.
T Consensus       195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~  271 (331)
T 3dss_A          195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN  271 (331)
T ss_dssp             CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence                        45789999999998875 33788888776666655           457899999999988  56775


Q ss_pred             HHHH
Q 010342          492 VTWR  495 (512)
Q Consensus       492 ~~~~  495 (512)
                       .|.
T Consensus       272 -~w~  274 (331)
T 3dss_A          272 -KWC  274 (331)
T ss_dssp             -HHH
T ss_pred             -chH
Confidence             444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.29  E-value=3.4e-06  Score=65.72  Aligned_cols=102  Identities=12%  Similarity=0.011  Sum_probs=68.6

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCh----hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc
Q 010342           29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL-PNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN  103 (512)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  103 (512)
                      ..++..+...+...|++++|...+++..+.... ++.    .++..+...+...|++++|...+.+.++..+...+....
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            446788888888999999999999887653110 111    356777788888889999888888877766554333333


Q ss_pred             hHhHHHHHHHHHccCChhHHHHHHHhc
Q 010342          104 NAAFANLVDSLCREGYVNEVFRIAEDM  130 (512)
Q Consensus       104 ~~~~~~l~~~~~~~g~~~~a~~~~~~~  130 (512)
                      ...+..+...+...|++++|.+.+++.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            445555666666666666666665553

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.29  E-value=8.5e-06  Score=63.57  Aligned_cols=62  Identities=19%  Similarity=0.107  Sum_probs=33.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       422 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...+++..+
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            345555555555555555555555555543 22444555555555555555555555555554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.27  E-value=1.9e-05  Score=73.57  Aligned_cols=118  Identities=10%  Similarity=-0.021  Sum_probs=93.7

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER   82 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~   82 (512)
                      .+.+.|++++|++.|++.++..+. +..+|..+..+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            567899999999999999987433 68899999999999999999999999999864 3467789999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchHhHHHHHHH--HHccCChhHHHHHHH
Q 010342           83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDS--LCREGYVNEVFRIAE  128 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~  128 (512)
                      |...++++++..+..      ...+..+..+  +.+.|++++|.+.++
T Consensus        93 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKPHD------KDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHSTTC------TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999988764432      2234444444  788899999999998

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.25  E-value=3.1e-05  Score=57.51  Aligned_cols=94  Identities=13%  Similarity=0.077  Sum_probs=67.4

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC---HHhHHHHH
Q 010342          355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD---NYVYAAMI  428 (512)
Q Consensus       355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~  428 (512)
                      ..+...+...|++++|...|+.+.+.. +.+.   ..+..+..++...|++++|...++++.+.. +.+   ...+..+.
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la   83 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence            345556677788888888888877643 2233   466677778888888888888888877643 233   55677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 010342          429 KGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       429 ~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .++...|++++|...|+++.+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            8888888888888888888775

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.25  E-value=2.1e-06  Score=62.77  Aligned_cols=85  Identities=9%  Similarity=0.000  Sum_probs=50.8

Q ss_pred             cCCHHHHHHHHHHhhcCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010342          399 SNQLDEAKRFWDDIVWPS--NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY  476 (512)
Q Consensus       399 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  476 (512)
                      .|++++|...|++.++.+  .+.+...+..+..+|...|++++|...|++.++..+. +...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            456666666666666542  1233445666666666777777777777766665422 4556666666677777777777


Q ss_pred             HHHHHHHH
Q 010342          477 QILREMRK  484 (512)
Q Consensus       477 ~~~~~m~~  484 (512)
                      +.+++...
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.23  E-value=3.9e-06  Score=78.25  Aligned_cols=117  Identities=10%  Similarity=-0.054  Sum_probs=66.2

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 010342          361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA  440 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  440 (512)
                      +.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            445566666666666666542 3345566666666666666666666666666553 44555666666666666666666


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 010342          441 VHFLYELVDSGVTPNIVCYNVVIDG--ACKLSMKREAYQILR  480 (512)
Q Consensus       441 ~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~  480 (512)
                      .+.+++..+.... +...+..+..+  +.+.|++++|.+.++
T Consensus        94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6666666654311 33344444444  555666666666665

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.18  E-value=1.9e-05  Score=70.87  Aligned_cols=91  Identities=5%  Similarity=-0.084  Sum_probs=66.4

Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010342          385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID  464 (512)
Q Consensus       385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  464 (512)
                      +..+|..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|.+.|++..+... .+...+..+..
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~  349 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            34567777788888888888888888887654 45667778888888888888888888888877642 25566666777


Q ss_pred             HHHhcCCHHHHHH
Q 010342          465 GACKLSMKREAYQ  477 (512)
Q Consensus       465 ~~~~~g~~~~a~~  477 (512)
                      .+...++.+++.+
T Consensus       350 ~~~~~~~~~~a~k  362 (370)
T 1ihg_A          350 VKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7766666666544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.18  E-value=4.3e-06  Score=65.18  Aligned_cols=127  Identities=17%  Similarity=0.096  Sum_probs=89.1

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCC-CC----hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhhHHHHHH
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHV-PN----VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPN----SLTYSVLVR   72 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~   72 (512)
                      .+...|++++|+..+++..+.... ++    ..++..+...+...|++++|...+++..+... .++    ..++..+..
T Consensus        18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~   97 (164)
T 3ro3_A           18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN   97 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            356789999999999987765211 11    14788899999999999999999999765310 112    346777788


Q ss_pred             HHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHh
Q 010342           73 GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED  129 (512)
Q Consensus        73 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  129 (512)
                      .+...|++++|...+.+.++..+...........+..+...+...|++++|.+.+++
T Consensus        98 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A           98 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            899999999999999888876554433223334555566666666666666665554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.16  E-value=2.7e-05  Score=72.30  Aligned_cols=88  Identities=7%  Similarity=-0.094  Sum_probs=54.0

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA  466 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  466 (512)
                      ..|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++.++.. +-+...+..+..++
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            456666666666677777777766666543 4455666666666777777777777776666653 12445566666666


Q ss_pred             HhcCCHHHHH
Q 010342          467 CKLSMKREAY  476 (512)
Q Consensus       467 ~~~g~~~~a~  476 (512)
                      .+.|+++++.
T Consensus       396 ~~~~~~~~a~  405 (457)
T 1kt0_A          396 KKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.14  E-value=2.8e-05  Score=60.55  Aligned_cols=64  Identities=17%  Similarity=0.075  Sum_probs=51.3

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      ...|..+..+|.+.|++++|...++++++.+ +.+...|..+..+|...|++++|...|++.++.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            4567777888888888888888888887764 556778888888888888888888888888776

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.14  E-value=2.7e-05  Score=58.92  Aligned_cols=104  Identities=12%  Similarity=-0.017  Sum_probs=85.1

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCC------C-----hHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCC-Chh
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVP------N-----VVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-----GVLP-NSL   65 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~~-~~~   65 (512)
                      .+.+.|++++|+..|++.++..+..      +     ...|+.+..++.+.|++++|+..+++..+.     .+.| +..
T Consensus        20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~   99 (159)
T 2hr2_A           20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   99 (159)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH
Confidence            3567899999999999999874331      1     228999999999999999999999999874     1135 445


Q ss_pred             hH----HHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010342           66 TY----SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA  106 (512)
Q Consensus        66 ~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (512)
                      .|    .....++...|++++|...|.+.++..|++.++.+....
T Consensus       100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~  144 (159)
T 2hr2_A          100 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER  144 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred             HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            77    888899999999999999999999999988777776443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.13  E-value=4.5e-06  Score=60.94  Aligned_cols=86  Identities=14%  Similarity=0.122  Sum_probs=48.4

Q ss_pred             CChhhHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 010342          258 KNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL  335 (512)
Q Consensus       258 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  335 (512)
                      |++++|+..|+..++.+  -+.+...+..+..++...|++++|+..|++..+..  +.+...+..+..++...|++++|.
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHH
Confidence            44455555555554432  11234455566666666666666666666666554  445566666666666666666666


Q ss_pred             HHHHhhcccC
Q 010342          336 NLLYQVMPQR  345 (512)
Q Consensus       336 ~~~~~~~~~~  345 (512)
                      ..+.+.+...
T Consensus        82 ~~~~~al~~~   91 (117)
T 3k9i_A           82 ELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            6666655443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.13  E-value=3.2e-05  Score=71.73  Aligned_cols=96  Identities=11%  Similarity=0.112  Sum_probs=66.4

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010342          351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG  430 (512)
Q Consensus       351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  430 (512)
                      ...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..+
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~  394 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3566777777888888888888888887754 4566777778888888888888888888887654 4455567777777


Q ss_pred             HHhcCCHHHHHH-HHHHHH
Q 010342          431 LCRSGKIHEAVH-FLYELV  448 (512)
Q Consensus       431 ~~~~g~~~~a~~-~~~~~~  448 (512)
                      +...++.+++.+ .+.+|.
T Consensus       395 ~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          395 QKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            777777776653 334443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.07  E-value=3.6e-05  Score=69.02  Aligned_cols=91  Identities=10%  Similarity=-0.005  Sum_probs=68.7

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK  429 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  429 (512)
                      +...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~  349 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34567778888888888888888888888754 4466778888888888888888888888887654 446667777777


Q ss_pred             HHHhcCCHHHHHH
Q 010342          430 GLCRSGKIHEAVH  442 (512)
Q Consensus       430 ~~~~~g~~~~a~~  442 (512)
                      ++...++.+++.+
T Consensus       350 ~~~~~~~~~~a~k  362 (370)
T 1ihg_A          350 VKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766666544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.07  E-value=0.0003  Score=66.85  Aligned_cols=136  Identities=10%  Similarity=0.023  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC--CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC-CHHHHHHH
Q 010342          367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN--QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHF  443 (512)
Q Consensus       367 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~  443 (512)
                      ++++...++.+.+.. +-+..+|..-..++.+.+  +++++.+.++++.+.+ +.+..+|+.-..++.+.| .++++.+.
T Consensus        89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence            677777777777653 445666776666777777  5577777777777665 556777777777777777 77777777


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCC
Q 010342          444 LYELVDSGVTPNIVCYNVVIDGACKL--------------SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN  506 (512)
Q Consensus       444 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  506 (512)
                      ++++++..+. |...|+.....+.+.              +.++++.+.++++.... +-|...|..+-.++...|.
T Consensus       167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence            7777776533 666777766666553              45678888888887642 3356678777777777665

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.05  E-value=1.2e-05  Score=71.39  Aligned_cols=149  Identities=8%  Similarity=-0.026  Sum_probs=81.1

Q ss_pred             cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 010342          314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI  393 (512)
Q Consensus       314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  393 (512)
                      ....+..+...+.+.|++++|...|.+.+...   |+...       +...++.+++...+.          ...|..+.
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla  237 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIA  237 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence            45566777778888888888888888866432   33221       222333333332221          13677788


Q ss_pred             HHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCH
Q 010342          394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG-ACKLSMK  472 (512)
Q Consensus       394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~  472 (512)
                      .+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++.++.... +...+..+... ....+..
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence            88888999999999998888764 556778888888999999999999999888765321 44455555544 2345667


Q ss_pred             HHHHHHHHHHHH
Q 010342          473 REAYQILREMRK  484 (512)
Q Consensus       473 ~~a~~~~~~m~~  484 (512)
                      +++..+|+.|..
T Consensus       316 ~~a~~~~~~~l~  327 (338)
T 2if4_A          316 QKQKEMYKGIFK  327 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHhhC
Confidence            777888888865

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.03  E-value=0.00023  Score=53.47  Aligned_cols=111  Identities=4%  Similarity=-0.062  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHH
Q 010342          365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEA  440 (512)
Q Consensus       365 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a  440 (512)
                      +++++|...|++..+.| .++..    |...|...+.+++|.+.|++..+.+   +...+..|...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            45677888888777766 33332    6666767777777888888877654   55667777777776    6788888


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 010342          441 VHFLYELVDSGVTPNIVCYNVVIDGACK----LSMKREAYQILREMRKNG  486 (512)
Q Consensus       441 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~  486 (512)
                      .+.|++..+.|   ++..+..|...|..    .+++++|.+++++..+.|
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            88888887765   56667777777777    778888888888888766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.01  E-value=0.00026  Score=67.27  Aligned_cols=174  Identities=9%  Similarity=-0.015  Sum_probs=131.1

Q ss_pred             CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC----------HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc
Q 010342          294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR----------IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR  363 (512)
Q Consensus       294 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  363 (512)
                      ..++|++.++++....  +.+...|+.--.++...++          ++++++.+++++...  +-+..+|+.-.-.+.+
T Consensus        44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence            3467788888888765  5566667666666666666          788888888877554  4556667766666777


Q ss_pred             cC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc------
Q 010342          364 LR--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS------  434 (512)
Q Consensus       364 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------  434 (512)
                      .+  +++++...++++.+.. +-+...|+.-..++.+.| .++++.+.+.++++.+ +.|...|+.....+.+.      
T Consensus       120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence            78  6799999999998865 557778888888888888 8899999999998775 66777888777776653      


Q ss_pred             --------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 010342          435 --------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE  474 (512)
Q Consensus       435 --------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  474 (512)
                              +.++++.+.+++.+... +-+...|..+...+.+.+++++
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                    55789999999998875 3377889888888877776444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.00  E-value=9.1e-05  Score=56.03  Aligned_cols=94  Identities=14%  Similarity=0.046  Sum_probs=61.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhcCCCC-----------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC
Q 010342          391 IVIDGLCESNQLDEAKRFWDDIVWPSNI-----------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-----GVTP  454 (512)
Q Consensus       391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p  454 (512)
                      .....+.+.|++++|...|++.++....           .+...|..+..++.+.|++++|+..+++.++.     .+.|
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p   95 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   95 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence            3444445555555555555555432211           01237777788888888888888888887764     1133


Q ss_pred             -ChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          455 -NIVCY----NVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       455 -~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                       +...|    .....++...|++++|+..|++..+
T Consensus        96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence             45667    7888888888888888888888764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.96  E-value=3.5e-05  Score=68.35  Aligned_cols=150  Identities=14%  Similarity=0.047  Sum_probs=89.0

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV  357 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  357 (512)
                      ....+..+...+.+.|++++|+..|++.....   |+...       +...++..++...+.           ...|..+
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nl  236 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNI  236 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH-----------HHHHHHH
Confidence            34567778888899999999999999988653   44321       233444445444331           1377888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH-HhcCC
Q 010342          358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL-CRSGK  436 (512)
Q Consensus       358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~  436 (512)
                      ..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|+++++.. +.+...+..+.... ...+.
T Consensus       237 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~  314 (338)
T 2if4_A          237 AACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKAL  314 (338)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence            889999999999999999998864 5577889999999999999999999999998654 34455566555552 34466


Q ss_pred             HHHHHHHHHHHHHC
Q 010342          437 IHEAVHFLYELVDS  450 (512)
Q Consensus       437 ~~~a~~~~~~~~~~  450 (512)
                      .+++...|.++...
T Consensus       315 ~~~a~~~~~~~l~~  328 (338)
T 2if4_A          315 YQKQKEMYKGIFKG  328 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHhhCC
Confidence            77888888888765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.89  E-value=2.9e-05  Score=58.62  Aligned_cols=87  Identities=14%  Similarity=0.067  Sum_probs=50.1

Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH----------HHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010342          362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL----------DEAKRFWDDIVWPSNIHDNYVYAAMIKGL  431 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  431 (512)
                      .+.+.+++|...++...+.. +.+...|..+..++...+++          ++|+..|++.++.+ +.+...|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence            34455666666666666654 44566666666666666543          36666666665543 33445566666666


Q ss_pred             HhcC-----------CHHHHHHHHHHHHHC
Q 010342          432 CRSG-----------KIHEAVHFLYELVDS  450 (512)
Q Consensus       432 ~~~g-----------~~~~a~~~~~~~~~~  450 (512)
                      ...|           ++++|++.|++.++.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            5543           555555555555553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.82  E-value=0.00015  Score=52.37  Aligned_cols=78  Identities=15%  Similarity=0.020  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      +...|++..+.. +.+...+..+..+|...|++++|...+++.++.. +.+...|..+..++...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555555432 3344555555566666666666666666655443 33444555555666666666666666655544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.81  E-value=9.4e-05  Score=68.51  Aligned_cols=124  Identities=13%  Similarity=0.015  Sum_probs=87.9

Q ss_pred             HHccCCHHHHHHHHHHHHhC---CCCC----ChHhHHHHHHHHHhcCCHHHHHHHHHHhhc-----CCC-CC-CHHhHHH
Q 010342          361 LFRLRRVEEAKEVFNCMLGI---GVVA----DSTTYAIVIDGLCESNQLDEAKRFWDDIVW-----PSN-IH-DNYVYAA  426 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~  426 (512)
                      +...|++++|+.++++.++.   -+.+    ...+++.|..+|...|++++|..++++.++     .|. .| ...+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45678888888888777652   1112    234688888888889999988888887652     121 12 2346888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          427 MIKGLCRSGKIHEAVHFLYELVD-----SGVT-PN-IVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       427 l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      |...|..+|++++|..++++..+     .|.. |+ ..+.+.+..++...|.+++|+.++.++++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999998887764     2422 22 23456677778888899999999998875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.80  E-value=8.4e-05  Score=53.30  Aligned_cols=64  Identities=13%  Similarity=0.126  Sum_probs=38.6

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      ...+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|.+.+++.++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3445555566666666666666666665543 345555666666666666666666666666654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.80  E-value=0.0002  Score=51.81  Aligned_cols=85  Identities=14%  Similarity=0.062  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 010342           11 GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL   90 (512)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   90 (512)
                      ++|+..|++..+..+. +...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...+.++
T Consensus         2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4688899999887443 68889999999999999999999999998864 345678888999999999999999999988


Q ss_pred             HHHhhhc
Q 010342           91 WERMKEE   97 (512)
Q Consensus        91 ~~~~~~~   97 (512)
                      ++..+..
T Consensus        80 l~~~~~~   86 (115)
T 2kat_A           80 LAAAQSR   86 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHhcccc
Confidence            8766544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.76  E-value=0.00022  Score=48.73  Aligned_cols=61  Identities=11%  Similarity=0.157  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            33444444444444444444444444432 11333444444444444444444444444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.71  E-value=0.00029  Score=48.15  Aligned_cols=84  Identities=10%  Similarity=0.153  Sum_probs=68.7

Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010342          385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID  464 (512)
Q Consensus       385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  464 (512)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~   85 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            45678888899999999999999999998764 5577889999999999999999999999998864 235666777766


Q ss_pred             HHHhcC
Q 010342          465 GACKLS  470 (512)
Q Consensus       465 ~~~~~g  470 (512)
                      ++.+.|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            665543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.00014  Score=52.01  Aligned_cols=64  Identities=11%  Similarity=0.090  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010342          351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP  415 (512)
Q Consensus       351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  415 (512)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3445555666666666777766666666643 345556666666677777777777777766654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.68  E-value=0.0011  Score=49.72  Aligned_cols=85  Identities=8%  Similarity=-0.026  Sum_probs=38.5

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh---
Q 010342          361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR---  433 (512)
Q Consensus       361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  433 (512)
                      |...+..++|...|++..+.|   +...+..|...|..    .+++++|...|++..+.+   +...+..|...|..   
T Consensus        35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred             HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCC
Confidence            333334444444444444432   33344444444444    444555555555544432   23344444444444   


Q ss_pred             -cCCHHHHHHHHHHHHHCC
Q 010342          434 -SGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       434 -~g~~~~a~~~~~~~~~~~  451 (512)
                       .+++++|.+.|++..+.|
T Consensus       109 ~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHCC
Confidence             455555555555555544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.67  E-value=9.6e-05  Score=55.79  Aligned_cols=99  Identities=9%  Similarity=-0.042  Sum_probs=67.5

Q ss_pred             hcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI----------HEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       398 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      +.+.+++|.+.++..++.. +.+...|..+..++...+++          ++|+..|++.++.++. +...|..+..+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence            4456777777777777654 55667777777777766653          4788888777776422 5567777777777


Q ss_pred             hcC-----------CHHHHHHHHHHHHHCCCCCChHHHHHHHHh
Q 010342          468 KLS-----------MKREAYQILREMRKNGLNPDAVTWRILDKL  500 (512)
Q Consensus       468 ~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  500 (512)
                      ..|           ++++|.+.|++..+  +.|+...|..-++.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~  133 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            654           77788888887777  56776666555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.64  E-value=0.00036  Score=64.62  Aligned_cols=125  Identities=8%  Similarity=-0.024  Sum_probs=88.9

Q ss_pred             HhhcCCHHHHHHHHHhhcccCC--CCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CC--CCCChHhHHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRG--YSP----GIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-----IG--VVADSTTYAI  391 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~  391 (512)
                      +...|++++|..++.+.+....  +.|    ...+++.|..+|...|++++|+.++++.++     .|  .+....+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4567888888887776654321  122    245678888899999999999988888764     22  1122346888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhc-----CCC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          392 VIDGLCESNQLDEAKRFWDDIVW-----PSN-IH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       392 l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      |...|...|++++|..+++++.+     .|. .| ...+.+.+..++...+.+++|..++.++++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888752     231 12 233556677788888999999999988876

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.54  E-value=0.00059  Score=47.71  Aligned_cols=62  Identities=11%  Similarity=0.045  Sum_probs=29.8

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      ...+..+..+|...|++++|...|+++++.+ +.+...|..+..+|...|++++|.+.+++.+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444455555555555555555544432 2333444445555555555555555554443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.50  E-value=0.0029  Score=55.16  Aligned_cols=78  Identities=18%  Similarity=0.112  Sum_probs=62.0

Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010342          418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL  497 (512)
Q Consensus       418 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  497 (512)
                      +.+..++..+...+...|++++|...+++++..+  |+...|..+...+.-.|++++|.+.+++...  +.|...||...
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~  349 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI  349 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence            5677788888777777899999999999988875  6777777788888889999999999988887  56777776544


Q ss_pred             HH
Q 010342          498 DK  499 (512)
Q Consensus       498 ~~  499 (512)
                      -.
T Consensus       350 ~~  351 (372)
T 3ly7_A          350 EN  351 (372)
T ss_dssp             HH
T ss_pred             hC
Confidence            33

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.45  E-value=0.00031  Score=49.18  Aligned_cols=63  Identities=16%  Similarity=0.141  Sum_probs=35.6

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhc
Q 010342          278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM  342 (512)
Q Consensus       278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  342 (512)
                      +...+..+..++...|++++|+..|++..+..  +.+...|..+..++...|++++|...+.+.+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34455555555666666666666666655543  3344455555566666666666666555543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.42  E-value=1.1e-05  Score=71.48  Aligned_cols=215  Identities=11%  Similarity=0.051  Sum_probs=122.0

Q ss_pred             ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010342           28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF  107 (512)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (512)
                      |+..|..++....+.|++++-+..+.-.++.  ..++..=+.|+-+|++.++..+-++.            -..|+..-.
T Consensus        82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEef------------l~~~N~A~i  147 (624)
T 3lvg_A           82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEF------------INGPNNAHI  147 (624)
T ss_dssp             CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTST------------TSCCSSSCT
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHH------------HcCCCcccH
Confidence            5566778888888888888877777655544  23444555777888887776654321            123455555


Q ss_pred             HHHHHHHHccCChhHHHHHHHhcCCCCC--------------------CCcchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010342          108 ANLVDSLCREGYVNEVFRIAEDMPQGKS--------------------VNEEFACGHMIDSLCRSGRNHGASRVVYVMRK  167 (512)
Q Consensus       108 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  167 (512)
                      ..+.+-|...|.++.|.-+|..+..-..                    -.++.+|..+..+|...+.+.-|.-.--.+.-
T Consensus       148 q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv  227 (624)
T 3lvg_A          148 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV  227 (624)
T ss_dssp             HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred             HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence            5677777777877777777776654221                    13455666666677766666665544333332


Q ss_pred             cCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----
Q 010342          168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR----  243 (512)
Q Consensus       168 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----  243 (512)
                           .+.-...++..|-..|-+++.+.+++...... ......|+-|.-.|++- .+++..+.++....+-..|.    
T Consensus       228 -----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvira  300 (624)
T 3lvg_A          228 -----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRA  300 (624)
T ss_dssp             -----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHH
T ss_pred             -----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHH
Confidence                 12223345556666777777777776655321 23455666666666554 44544444443322211111    


Q ss_pred             ---cccHHHHHHHHHccCChhhH
Q 010342          244 ---TRICNIYLRALCLIKNPTEL  263 (512)
Q Consensus       244 ---~~~~~~l~~~~~~~~~~~~a  263 (512)
                         ...|.-++-.|+...+++.|
T Consensus       301 cE~ahLW~ElvfLY~~ydE~DnA  323 (624)
T 3lvg_A          301 AEQAHLWAELVFLYDKYEEYDNA  323 (624)
T ss_dssp             HTTTTCHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhhHHHHHHHHhcchhHHHH
Confidence               23445555555555555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.30  E-value=0.00073  Score=50.37  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHH
Q 010342          402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKREAY  476 (512)
Q Consensus       402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~  476 (512)
                      +..+.+-|.+....+ +++..+...+.+++++.+   ++++++.++++..+.. .|  +...+-.+.-++.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            344555555555544 466667777777777776   5557777777777754 23  3556666777778888888888


Q ss_pred             HHHHHHHHCCCCCCh
Q 010342          477 QILREMRKNGLNPDA  491 (512)
Q Consensus       477 ~~~~~m~~~~~~p~~  491 (512)
                      +.++.+.+  +.|+.
T Consensus        92 ~y~~~lL~--ieP~n  104 (152)
T 1pc2_A           92 KYVRGLLQ--TEPQN  104 (152)
T ss_dssp             HHHHHHHH--HCTTC
T ss_pred             HHHHHHHh--cCCCC
Confidence            88888777  56654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.07  E-value=7.3e-05  Score=66.47  Aligned_cols=247  Identities=12%  Similarity=0.078  Sum_probs=166.8

Q ss_pred             ChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhH
Q 010342           63 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC  142 (512)
Q Consensus        63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  142 (512)
                      .+..|+.|..+....+...+|+..+           --.-++..|..++....+.|.+++.++.+...++....|  ..=
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsy-----------IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~ID  119 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSY-----------IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVE  119 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSS-----------CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTT
T ss_pred             CccHHHHHHHHHHccCchHHHHHHH-----------HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccH
Confidence            6678888999999998888885432           223456678889999999999999999988877764444  344


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCC------------------
Q 010342          143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG------------------  204 (512)
Q Consensus       143 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------  204 (512)
                      +.|+-+|++.++..+-.+++.       .||..-...+.+-|...|.++.|.-+|..+....                  
T Consensus       120 teLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda  192 (624)
T 3lvg_A          120 TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG  192 (624)
T ss_dssp             HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred             HHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence            578899999988776544332       4677777888888999999998888876542211                  


Q ss_pred             --CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhH
Q 010342          205 --YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL  282 (512)
Q Consensus       205 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  282 (512)
                        -..++.||..+-.+|...+++.-|.-.--.+.-.     ..-...++..|-..|.+++.+.+++.-.... +.....|
T Consensus       193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmF  266 (624)
T 3lvg_A          193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF  266 (624)
T ss_dssp             TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHH
T ss_pred             HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHH
Confidence              1235667887777888877777766554444322     2234456667777888888888887766432 3466777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------cHHHHHHHHHHHhhcCCHHHHHH
Q 010342          283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAP------DAVTFTTIIFGLLNVGRIQEALN  336 (512)
Q Consensus       283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~  336 (512)
                      +.|.-.|++- ++++..+.++..-.+-.++.      ....|..++..|.+..+++.|..
T Consensus       267 TELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          267 TELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            7777777764 45555555554333221111      23456777777777777777664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.05  E-value=0.0048  Score=42.12  Aligned_cols=65  Identities=14%  Similarity=-0.015  Sum_probs=31.9

Q ss_pred             CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          419 HDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       419 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .|...+..+..++...++   .++|...+++.++.. +-+......+...+.+.|++++|+..|+++.+
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344444445544443332   455555555555543 11444455555555555555555555555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.02  E-value=0.0095  Score=52.01  Aligned_cols=74  Identities=15%  Similarity=-0.006  Sum_probs=50.3

Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 010342          383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN  460 (512)
Q Consensus       383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  460 (512)
                      +.++.+|..+...+...|++++|...+++++..+  |+...|..+...+...|++++|.+.+++....  .|...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence            5566667666666666677777777777777654  56666666677777777777777777777765  44444543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.01  E-value=0.00096  Score=46.44  Aligned_cols=55  Identities=13%  Similarity=0.173  Sum_probs=41.1

Q ss_pred             cccccCcHHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010342            3 QLCGLSRVGEAHKLFFDMKSRGHVPNVV-SYTTLIHGYCRTGEMDVAYKVFDEMRHC   58 (512)
Q Consensus         3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~   58 (512)
                      .+.+.|++++|+..|++..+..+. +.. .+..+..++...|++++|...|++..+.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            355678888888888887776332 456 7777888888888888888888888775

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.90  E-value=0.0029  Score=43.88  Aligned_cols=56  Identities=11%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             HHHHhcCCHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          394 DGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      ..+...|++++|...++++++.. +.+.. .+..+..++...|++++|.+.|++.++.
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34455555666666665555433 33444 5555555555666666666666655554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.86  E-value=0.015  Score=39.66  Aligned_cols=68  Identities=16%  Similarity=0.103  Sum_probs=45.5

Q ss_pred             CCChHhHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          383 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       383 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      +.++..+..+..++...++   .++|..++++.++.+ +.+......+...+...|++++|+..|+++.+..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4455666666666654443   577777777777654 5566667777777777777777777777777653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.74  E-value=0.0045  Score=56.33  Aligned_cols=99  Identities=7%  Similarity=-0.134  Sum_probs=67.4

Q ss_pred             cCCHHHHHHHHHHhhc---CCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-hhhHHHHHH
Q 010342          399 SNQLDEAKRFWDDIVW---PSNIH----DNYVYAAMIKGLCRSGKIHEAVHFLYELVD-----SG-VTPN-IVCYNVVID  464 (512)
Q Consensus       399 ~g~~~~a~~~~~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~p~-~~~~~~l~~  464 (512)
                      .|++++|..++++.++   .-+.|    ...+++.|..+|..+|++++|..++++.++     .| -.|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            4677888888777653   11111    234688888899999999999988888764     23 1333 346888899


Q ss_pred             HHHhcCCHHHHHHHHHHHHH---CCCCCChHHHHHH
Q 010342          465 GACKLSMKREAYQILREMRK---NGLNPDAVTWRIL  497 (512)
Q Consensus       465 ~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~l  497 (512)
                      .|...|++++|+.++++..+   .-+.||......+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l  426 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI  426 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            99999999999999888752   2234555444333

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.74  E-value=0.0086  Score=54.58  Aligned_cols=91  Identities=15%  Similarity=0.043  Sum_probs=61.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhcCC---CCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-hhh
Q 010342          393 IDGLCESNQLDEAKRFWDDIVWPS---NIH----DNYVYAAMIKGLCRSGKIHEAVHFLYELVD-----SG-VTPN-IVC  458 (512)
Q Consensus       393 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~p~-~~~  458 (512)
                      +..+.+.|++++|..++++..+..   +.|    ...+++.++.+|...|++++|..++++.++     .| -.|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            334556677777777777775321   111    234677788888888888888888877663     12 1222 345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          459 YNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       459 ~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      ++.|...|...|++++|+.++++..
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            7778888888888888888888765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.65  E-value=0.16  Score=50.97  Aligned_cols=100  Identities=12%  Similarity=0.022  Sum_probs=54.8

Q ss_pred             HHHhcCChhHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHc
Q 010342           38 GYCRTGEMDVAYK-VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR  116 (512)
Q Consensus        38 ~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  116 (512)
                      .....+++++|.+ ++..+      |+......++..+.+.|..+.|.++...            +.     .-......
T Consensus       608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~------------~~-----~~f~~~l~  664 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD------------QD-----QKFELALK  664 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC------------HH-----HHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC------------cc-----hheehhhh
Confidence            3345667777755 44111      1122235566666667777766543211            10     11233455


Q ss_pred             cCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010342          117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR  166 (512)
Q Consensus       117 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  166 (512)
                      .|++++|+++.+.+.      +...|..+...+.+.++++.|.+.|..+.
T Consensus       665 ~~~~~~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          665 VGQLTLARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HTCHHHHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            677777777765542      34566666777777777777766666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.65  E-value=0.0052  Score=55.91  Aligned_cols=87  Identities=6%  Similarity=-0.093  Sum_probs=62.6

Q ss_pred             ccCCHHHHHHHHHHHHhC---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhc-----CCC-CC-CHHhHHHHH
Q 010342          363 RLRRVEEAKEVFNCMLGI---GVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVW-----PSN-IH-DNYVYAAMI  428 (512)
Q Consensus       363 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~  428 (512)
                      ..|++++|+.++++.++.   -+.|+    ..+++.|..+|...|++++|..++++.+.     .|. .| ...+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            356788888888777651   11222    34688888899999999999888888752     221 22 234688899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 010342          429 KGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       429 ~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      ..|..+|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999988764

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.57  E-value=0.12  Score=37.12  Aligned_cols=140  Identities=16%  Similarity=0.152  Sum_probs=95.7

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHH
Q 010342          290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE  369 (512)
Q Consensus       290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  369 (512)
                      .-.|..++..++..+...    +.+..-++.++.-....-+-+-..++++..-+-.    |.          ..+|+...
T Consensus        18 ildG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Di----------s~C~NlKr   79 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKS   79 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHH
T ss_pred             HHhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------HhhhcHHH
Confidence            345888888888888876    4456667777777777777777777666643222    21          23444444


Q ss_pred             HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      ...-+-.+     ..+......-++.+...|.-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus        80 Vi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           80 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            44444332     234555666777788888888888888886543 377788888888889999998899998888888


Q ss_pred             CCCC
Q 010342          450 SGVT  453 (512)
Q Consensus       450 ~~~~  453 (512)
                      .|++
T Consensus       154 kG~k  157 (172)
T 1wy6_A          154 KGEK  157 (172)
T ss_dssp             TTCH
T ss_pred             hhhH
Confidence            8754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.55  E-value=0.0098  Score=54.21  Aligned_cols=92  Identities=12%  Similarity=0.009  Sum_probs=65.6

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhC---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhc-----CC-CCC-CHHh
Q 010342          358 LRGLFRLRRVEEAKEVFNCMLGI---GVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVW-----PS-NIH-DNYV  423 (512)
Q Consensus       358 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~~-~~~~  423 (512)
                      +..+.+.|++++|+.++++..+.   -+.|+    ..+++.|..+|...|++++|..++++++.     .| ..| ...+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34455678888888888888752   11222    34678888888889999999888887752     11 122 2346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          424 YAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       424 ~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      ++.|...|..+|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88888999999999999999887764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.54  E-value=0.2  Score=50.27  Aligned_cols=128  Identities=17%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010342          283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF  362 (512)
Q Consensus       283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  362 (512)
                      ..++..+.+.|.++.|.++.+.        +..     -.......|++++|.++...       ..+...|..+...+.
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~--------~~~-----~f~~~l~~~~~~~A~~~~~~-------~~~~~~W~~la~~al  692 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD--------QDQ-----KFELALKVGQLTLARDLLTD-------ESAEMKWRALGDASL  692 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC--------HHH-----HHHHHHHHTCHHHHHHHHTT-------CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHheecCCC--------cch-----heehhhhcCCHHHHHHHHHh-------hCcHhHHHHHHHHHH
Confidence            5566666667777776655421        111     12334556777777776533       135567777777777


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010342          363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH  442 (512)
Q Consensus       363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  442 (512)
                      +.++++.|++.|..+..         |..+...|...|+.+...++-+.....+      -++.-..+|.+.|++++|.+
T Consensus       693 ~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~  757 (814)
T 3mkq_A          693 QRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKD  757 (814)
T ss_dssp             HTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHH
Confidence            77777777777776643         3344444555555555555544444333      12233334444555555555


Q ss_pred             HHH
Q 010342          443 FLY  445 (512)
Q Consensus       443 ~~~  445 (512)
                      ++.
T Consensus       758 ~~~  760 (814)
T 3mkq_A          758 LLI  760 (814)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.52  E-value=0.024  Score=40.61  Aligned_cols=89  Identities=13%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHH
Q 010342          399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE---AVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKR  473 (512)
Q Consensus       399 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~  473 (512)
                      ...+..+.+-|.+....+ .++..+-..+.+++++..+...   ++.++..+.+.+ .|  .....-.|.-++.+.|+++
T Consensus        14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence            334445555555554444 3666666667777777766555   777777776653 23  3445566777788888888


Q ss_pred             HHHHHHHHHHHCCCCCCh
Q 010342          474 EAYQILREMRKNGLNPDA  491 (512)
Q Consensus       474 ~a~~~~~~m~~~~~~p~~  491 (512)
                      +|.+.++.+++  +.|+.
T Consensus        92 ~A~~~~~~lL~--~eP~n  107 (126)
T 1nzn_A           92 KALKYVRGLLQ--TEPQN  107 (126)
T ss_dssp             HHHHHHHHHHH--HCTTC
T ss_pred             HHHHHHHHHHH--hCCCC
Confidence            88888888877  46653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.51  E-value=0.13  Score=36.88  Aligned_cols=141  Identities=15%  Similarity=0.089  Sum_probs=95.9

Q ss_pred             HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  404 (512)
                      ..-.|..++..+++.+.....    +..-||.++--....-+-+-..++++..-+   -.|.          ..+|++..
T Consensus        17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHH
Confidence            344677777777777755433    344455555444444455555555555433   1121          23455555


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ....+-.+     ..+....+.-+..+..+|+-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+
T Consensus        80 Vi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           80 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            55555544     234456777788899999999999999987553 478899999999999999999999999999999


Q ss_pred             CCCC
Q 010342          485 NGLN  488 (512)
Q Consensus       485 ~~~~  488 (512)
                      .|++
T Consensus       154 kG~k  157 (172)
T 1wy6_A          154 KGEK  157 (172)
T ss_dssp             TTCH
T ss_pred             hhhH
Confidence            9965

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.49  E-value=0.034  Score=38.88  Aligned_cols=63  Identities=8%  Similarity=0.082  Sum_probs=30.2

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCC------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPS------NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      .-+..|...+...|++..|...++.+.+..      ..+...++..|..++.+.|++++|...++++.+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            334445555555555555555555544210      112333444555555555555555555555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.24  Score=37.95  Aligned_cols=130  Identities=11%  Similarity=0.083  Sum_probs=93.6

Q ss_pred             HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010342          322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ  401 (512)
Q Consensus       322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  401 (512)
                      .....+.|+++.|.++..+.       .+...|..|.......|+++-|+..|.....         +..+.-.|...|+
T Consensus        12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred             HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence            44567889999999987662       4678999999999999999999999987654         4556667777888


Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010342          402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE  481 (512)
Q Consensus       402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  481 (512)
                      .++..++-+.....|      -++.-...+...|+++++.+++.+.   |..|.      -.......|..+.|.++.+.
T Consensus        76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~e------A~~~A~t~g~~~~a~~~~~~  140 (177)
T 3mkq_B           76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPL------AYAVAKANGDEAAASAFLEQ  140 (177)
T ss_dssp             HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHH------HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHH------HHHHHHHcCcHHHHHHHHHH
Confidence            888877777666554      3555566677889999999988543   32221      11122235677778888776


Q ss_pred             H
Q 010342          482 M  482 (512)
Q Consensus       482 m  482 (512)
                      +
T Consensus       141 ~  141 (177)
T 3mkq_B          141 A  141 (177)
T ss_dssp             T
T ss_pred             h
Confidence            5

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.27  E-value=1.1  Score=44.76  Aligned_cols=27  Identities=19%  Similarity=0.378  Sum_probs=23.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRH   57 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~   57 (512)
                      -|..+++.+.+.++.+.+.++|.+...
T Consensus       232 dy~~a~~~ai~LnD~~li~~if~~l~~  258 (963)
T 4ady_A          232 DYLTLNKVVVNLNDAGLALQLFKKLKE  258 (963)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            377788888899999999999999874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.25  E-value=0.04  Score=41.10  Aligned_cols=82  Identities=11%  Similarity=0.107  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHHhcCCHHHHH
Q 010342          367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAV  441 (512)
Q Consensus       367 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~  441 (512)
                      ...+.+-|.+....+ +++..+...+..++.+.+   +.+++..++++..+.+ .|  +...+-.|.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            445566666666655 467777777777888877   5668888888887654 23  3456666777888888888888


Q ss_pred             HHHHHHHHC
Q 010342          442 HFLYELVDS  450 (512)
Q Consensus       442 ~~~~~~~~~  450 (512)
                      +.++.+.+.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888888875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.28  Score=37.64  Aligned_cols=130  Identities=14%  Similarity=0.120  Sum_probs=87.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC
Q 010342          286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR  365 (512)
Q Consensus       286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  365 (512)
                      .....+.|+++.|.++.+.+       .+...|..+.......|+++-|.+.|.+.-          -+..+.-.|.-.|
T Consensus        12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg   74 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTG   74 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHT
T ss_pred             HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhC
Confidence            44456779999999887654       578889999999999999999999887731          3444555566778


Q ss_pred             CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY  445 (512)
Q Consensus       366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  445 (512)
                      +.+....+-+.....|      -++.-...+...|+++++.+++.+..+   .|...      -.....|-.+.|.++..
T Consensus        75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~  139 (177)
T 3mkq_B           75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLE  139 (177)
T ss_dssp             CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHH
Confidence            8877776666555544      145555666778999999998876532   12111      11122466677777766


Q ss_pred             HH
Q 010342          446 EL  447 (512)
Q Consensus       446 ~~  447 (512)
                      ++
T Consensus       140 ~~  141 (177)
T 3mkq_B          140 QA  141 (177)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.17  E-value=0.047  Score=45.65  Aligned_cols=106  Identities=9%  Similarity=0.111  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHhCCCCCC---hHhHHHHHHHHHhc-----CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc-CCH
Q 010342          367 VEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCES-----NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKI  437 (512)
Q Consensus       367 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~  437 (512)
                      ...|...+++..+.  .|+   ...|..+...|...     |+.++|.+.|++.++.+...+..++..+.+.++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45677777777764  344   45677788888773     88888888888887754222466777777777774 888


Q ss_pred             HHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          438 HEAVHFLYELVDSGVT--PNIVCYNVVIDGACKLSMKREAYQILREM  482 (512)
Q Consensus       438 ~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  482 (512)
                      +++.+.+++.+...+.  |+....+.+        .-++|..++.+.
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~  295 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHV  295 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHh
Confidence            8888888888877655  554333322        234555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.10  E-value=0.054  Score=45.32  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc-CCHHH
Q 010342          331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDE  404 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~  404 (512)
                      ...|...+++.++-..--.+...|..+...|.+.     |+.++|.+.|++.++.+..-+..++....+.++.. |+.+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            4566666766654432222355677777777774     78888888888888753212366677777777774 78888


Q ss_pred             HHHHHHHhhcCCCC--CCHHhHHH
Q 010342          405 AKRFWDDIVWPSNI--HDNYVYAA  426 (512)
Q Consensus       405 a~~~~~~~~~~~~~--~~~~~~~~  426 (512)
                      +.+.+++.+.....  |+....+.
T Consensus       259 a~~~L~kAL~a~p~~~P~~~lan~  282 (301)
T 3u64_A          259 FDEALDRALAIDPESVPHNKLLVI  282 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCChhHHHH
Confidence            88888888766544  55444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.86  E-value=0.061  Score=37.51  Aligned_cols=62  Identities=6%  Similarity=-0.046  Sum_probs=25.4

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhhcccCC-----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342          318 FTTIIFGLLNVGRIQEALNLLYQVMPQRG-----YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG  379 (512)
Q Consensus       318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  379 (512)
                      +..+...+.+.+++..|..+|...+....     -.+....+..+..++.+.|+++.|...++++.+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            33444444444444444444444332210     011223334444444444444444444444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.85  E-value=0.086  Score=38.79  Aligned_cols=51  Identities=8%  Similarity=-0.016  Sum_probs=29.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010342          435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG  486 (512)
Q Consensus       435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  486 (512)
                      ++.++|.++|+.+++.+-.- ...|.....--.+.|+...|.+++.+....+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            56666666666665542222 4455555555556666666666666666544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.67  E-value=0.29  Score=36.06  Aligned_cols=51  Identities=8%  Similarity=0.063  Sum_probs=31.4

Q ss_pred             CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010342          258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK  309 (512)
Q Consensus       258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  309 (512)
                      +++++|.++|..+++..-.. ...|....+.-.+.|+...|.+++......+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            56666666666665543222 4555555555566777777777777777654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.35  E-value=1  Score=41.11  Aligned_cols=166  Identities=6%  Similarity=-0.017  Sum_probs=90.2

Q ss_pred             HHHHHHHHccCChhhHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCc--HHH
Q 010342          248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPD-----VITLNTVINGFCKMGRIEEALKVLNDMVA---GKFCAPD--AVT  317 (512)
Q Consensus       248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~--~~~  317 (512)
                      ..+...+...|++.+|..++..+...-...+     ...+...++.|...+++..|..++.++..   ....+|+  ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            4456666677777777777776653211111     23556667788888999888888887642   1111222  234


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH----HHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 010342          318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR----GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI  393 (512)
Q Consensus       318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  393 (512)
                      +...+..+...+++.+|...|.+.........+...+..++.    +..-.+..+.-..+.........-++...|..++
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~  300 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV  300 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence            566677778888888888888776644333333332222211    1111211112222222222211234556777788


Q ss_pred             HHHHhc--CCHHHHHHHHHHhh
Q 010342          394 DGLCES--NQLDEAKRFWDDIV  413 (512)
Q Consensus       394 ~~~~~~--g~~~~a~~~~~~~~  413 (512)
                      .+|...  .+++.+.+.|....
T Consensus       301 k~f~~~~L~~~~~~~~~~~~~L  322 (445)
T 4b4t_P          301 KLFTTNELMRWPIVQKTYEPVL  322 (445)
T ss_dssp             HHHHHCCSSSHHHHHHHTCSST
T ss_pred             HHHHhchHhhhHHHHHHHHHHh
Confidence            887654  35566666555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.68  Score=42.33  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=27.2

Q ss_pred             CChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhc
Q 010342           78 RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM  130 (512)
Q Consensus        78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  130 (512)
                      ++++.|.+.+..+.++.....+...+......++..|...|+++...+.+..+
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L   82 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL   82 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34455555444444444444444555555555666666666666555544443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.07  E-value=0.2  Score=35.88  Aligned_cols=83  Identities=11%  Similarity=0.092  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH---HHHHHHHhhcCCCCC--CHHhHHHHHHHHHhcCCHHHH
Q 010342          366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE---AKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEA  440 (512)
Q Consensus       366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a  440 (512)
                      ....+..-|.+....| .++..+--.+..++.+..+...   ++.+++.+.+.+ .|  .....-.|.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            4445555665555544 3666666667777777775554   778888877654 22  344555677788888888888


Q ss_pred             HHHHHHHHHC
Q 010342          441 VHFLYELVDS  450 (512)
Q Consensus       441 ~~~~~~~~~~  450 (512)
                      .+.++.+++.
T Consensus        94 ~~~~~~lL~~  103 (126)
T 1nzn_A           94 LKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888888875

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.75  E-value=0.67  Score=33.36  Aligned_cols=74  Identities=14%  Similarity=0.100  Sum_probs=54.4

Q ss_pred             CCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 010342          417 NIHDNYVYAAMIKGLCRSGKI---HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV  492 (512)
Q Consensus       417 ~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  492 (512)
                      ..|+..+--.+.+++++..+.   .+++.++..+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+  +.|+..
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~  112 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK  112 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence            356666766677888877654   46788888887765222456677788889999999999999998887  567643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.31  E-value=4.8  Score=40.27  Aligned_cols=260  Identities=12%  Similarity=0.033  Sum_probs=131.6

Q ss_pred             HHhccCchhHHHHHHHHHHhCC--CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-------CCcccHHHHHHH
Q 010342          183 GLCKHGGCMRAYQLLEEGIQFG--YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV-------DRTRICNIYLRA  253 (512)
Q Consensus       183 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~  253 (512)
                      +....|+.++++.++......+  -.+....=..+.-+....|..+++..++.........       +....-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            3556777788877776544311  0111222223333444555555677766665543220       001111222222


Q ss_pred             HHccCC-hhhHHHHHHHHHhcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010342          254 LCLIKN-PTELLNVLVFMLQTQCQPDVITLN--TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR  330 (512)
Q Consensus       254 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (512)
                      ....|. -+++.+.+..+....- +......  ++...+.-.|+.+....++..+.+..  ..+..-...+.-++...|+
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCC
Confidence            222332 2345555555554321 1111112  23334556678777778877766532  2233333334444556777


Q ss_pred             HHHHHHHHHhhcccCCCCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 010342          331 IQEALNLLYQVMPQRGYSPGIVTY--NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF  408 (512)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  408 (512)
                      .+.+..+++.+....  .|....-  .++.-+|+..|+......++..+.... ..+......+.-++...|+.+.+.++
T Consensus       540 ~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl  616 (963)
T 4ady_A          540 QELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI  616 (963)
T ss_dssp             GGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred             hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            777777665533221  2222221  233446677888888887888887642 22333333344455556777777777


Q ss_pred             HHHhhcCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 010342          409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKI-HEAVHFLYELVD  449 (512)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~  449 (512)
                      ++.+.+.+ .|...--..+.-+....|.. .++...+..+..
T Consensus       617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            77666543 44444444444444444443 678888888864

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.31  E-value=0.36  Score=43.27  Aligned_cols=67  Identities=13%  Similarity=0.133  Sum_probs=33.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCChHH
Q 010342          426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVT  493 (512)
Q Consensus       426 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~  493 (512)
                      .++..+...|++++|...+..+.... +.+...|..++.++.+.|+..+|++.|+++.     +.|+.|+..+
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            34444445555555555555554432 2244455555555555555555555555543     2355555444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.60  E-value=1.5  Score=32.01  Aligned_cols=72  Identities=14%  Similarity=0.088  Sum_probs=53.2

Q ss_pred             CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010342          418 IHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA  491 (512)
Q Consensus       418 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~  491 (512)
                      .|+..+--.+.+++++..+   ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+++  +.|+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence            5666666667788887765   446788888887754333455666778888899999999999998888  67764

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.41  E-value=0.49  Score=31.89  Aligned_cols=45  Identities=16%  Similarity=0.143  Sum_probs=22.0

Q ss_pred             HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      +..+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-+.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444445555555555555555555555555554443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.13  E-value=8.5  Score=36.78  Aligned_cols=71  Identities=8%  Similarity=0.008  Sum_probs=34.2

Q ss_pred             HHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHc
Q 010342          180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL  256 (512)
Q Consensus       180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  256 (512)
                      .+..+.+.+++...+..+..     .+.+...-.....+....|+...|....+.+-..+ ...+..+..++..+.+
T Consensus        78 ~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~  148 (618)
T 1qsa_A           78 FVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRA  148 (618)
T ss_dssp             HHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHH
Confidence            34445556666555553321     12344444445555666677666666555554332 2233344444444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.99  E-value=1.1  Score=40.24  Aligned_cols=98  Identities=7%  Similarity=0.058  Sum_probs=70.9

Q ss_pred             cCcHHHHHHHHHHHHhC--CC-CCCh------------------HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 010342            7 LSRVGEAHKLFFDMKSR--GH-VPNV------------------VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL   65 (512)
Q Consensus         7 ~g~~~~A~~~~~~~~~~--~~-~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~   65 (512)
                      .|+.+.|.+.+++....  |. -++.                  .+...++..+...|++.+|+..+..+.... +.+..
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~  206 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREP  206 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            46777777778777654  32 1111                  012345566778889999988888887653 44777


Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010342           66 TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA  105 (512)
Q Consensus        66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  105 (512)
                      .|..+|.++.+.|+..+|.+.|.++.+.+.++-++.|+..
T Consensus       207 ~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          207 LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            8888999999999999999998888888777778888754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.17  E-value=1.1  Score=43.64  Aligned_cols=55  Identities=11%  Similarity=0.001  Sum_probs=43.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      .+-|...|+++-|+++-++.+..- +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            344667788899998888888763 3357789999999999999999988888773

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.84  E-value=1.9  Score=29.09  Aligned_cols=63  Identities=13%  Similarity=0.183  Sum_probs=45.9

Q ss_pred             cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 010342            9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR   72 (512)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~   72 (512)
                      +.-+.++-++.+...+..|++....+.+.+|-|-+++.-|.++|+-.+.+- .+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            455677777777777888888888888888888888888888888776542 233445666554

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=90.64  E-value=1.4  Score=31.67  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=23.5

Q ss_pred             HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      +..+-++.+...+.-|++.+..+.+++|.+.+|+..|.++|+-+..
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~  116 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD  116 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444444444555555555555555555555555555554443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.37  E-value=1.4  Score=40.03  Aligned_cols=63  Identities=13%  Similarity=0.015  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP--NSLTYSVLVRGVLRTRDVERANVLMFKLWER   93 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   93 (512)
                      +...+...|.+.|+++.|.+.|.++...-..+  -...+..+++.+...+++..+...+.++-..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            56677777888888888888888776642222  2345666677777777777777766665443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.27  E-value=2.8  Score=31.61  Aligned_cols=64  Identities=5%  Similarity=-0.042  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCh-------hhHHHHHHHHHhcCChhhHHHHHHHHHHHh
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNS-------LTYSVLVRGVLRTRDVERANVLMFKLWERM   94 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   94 (512)
                      ++-.=+..+...+.++.|+-+.+.+... +..|+.       .++..+..++...+++.+|...|.++++.-
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            4455566788899999998888876442 123342       245667788889999999999988876643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.15  E-value=1.2  Score=43.36  Aligned_cols=54  Identities=17%  Similarity=0.065  Sum_probs=38.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342          286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV  341 (512)
Q Consensus       286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  341 (512)
                      ...+...|+++.|+.+-++.....  +.+..+|..|..+|...|+++.|+-.+..+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            334556677888888877777654  556777888888888888888887777653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.49  E-value=6.4  Score=41.16  Aligned_cols=51  Identities=12%  Similarity=-0.057  Sum_probs=28.5

Q ss_pred             HHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010342          180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM  235 (512)
Q Consensus       180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  235 (512)
                      ++..+...+..+.+.++....     +.++..--.+..++...|++++|.+.|++.
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            444444555555554443322     223333334566777788888888888665

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.42  E-value=11  Score=33.50  Aligned_cols=27  Identities=7%  Similarity=-0.070  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010342          210 HTYKVLVEGLCGESDLEKARKVLQFML  236 (512)
Q Consensus       210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~  236 (512)
                      .....+...|.+.|+.++..+++....
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~   46 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTR   46 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            466677888888888888888877653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.03  E-value=16  Score=38.22  Aligned_cols=165  Identities=13%  Similarity=0.094  Sum_probs=84.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc
Q 010342          284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR  363 (512)
Q Consensus       284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  363 (512)
                      .++..+...+..+.+.++..-.      +.+....-.+..++...|++++|.+.|.+.  ..++..+.....        
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~--------  880 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFA--------  880 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCS--------
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhh--------
Confidence            4455555666666655544322      233333345566677778888888777664  222222211100        


Q ss_pred             cCCHHHHHHHHHHHHhCC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHhcCCH
Q 010342          364 LRRVEEAKEVFNCMLGIG--VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN----YVYAAMIKGLCRSGKI  437 (512)
Q Consensus       364 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~  437 (512)
                        ....    +..+....  ...-..-|..++..+.+.+.++.+.++-+.+++...+.+.    ..|..+...+...|++
T Consensus       881 --~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y  954 (1139)
T 4fhn_B          881 --VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF  954 (1139)
T ss_dssp             --SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             --hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence              0000    00111100  0112234566667777777777777766665543211111    2466677777777777


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 010342          438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK  472 (512)
Q Consensus       438 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  472 (512)
                      ++|...+-.+.+...  -..++..|+..++..|..
T Consensus       955 e~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          955 DAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             GGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence            777777766655432  234555566555554443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=88.66  E-value=3.8  Score=29.54  Aligned_cols=68  Identities=15%  Similarity=0.089  Sum_probs=33.7

Q ss_pred             CCChHhHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          383 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       383 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .|+..+--.+..++.+..+   ..+++.+++++.+.+.......+-.|.-++.+.|++++|.+..+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3444443344444444443   3345555555554331122334445555666666666666666666554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.31  E-value=6.9  Score=28.61  Aligned_cols=68  Identities=15%  Similarity=0.089  Sum_probs=37.8

Q ss_pred             CCChHhHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          383 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       383 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .|+..+--.+..++.+..+   ..+++.+++.+.+.+........-.|.-++.+.|++++|.++.+.+.+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            3455544445555555443   3455666666655332223344455566667777777777777777664

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.05  E-value=4.3  Score=29.20  Aligned_cols=45  Identities=13%  Similarity=0.192  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 010342           12 EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR   56 (512)
Q Consensus        12 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~   56 (512)
                      +.++-++.+...+..|++......+.+|-+-+++.-|..+|+-.+
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK  115 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK  115 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=86.97  E-value=14  Score=31.82  Aligned_cols=194  Identities=10%  Similarity=0.077  Sum_probs=96.0

Q ss_pred             cCcHHHHHHHHHHHHhCCCC---CC-hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010342            7 LSRVGEAHKLFFDMKSRGHV---PN-VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER   82 (512)
Q Consensus         7 ~g~~~~A~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~   82 (512)
                      .++.++.++-|+.-++.|.-   -. -..|.++..-|.+.+++++|++++-.--.               .+.+.|+...
T Consensus         9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~s   73 (336)
T 3lpz_A            9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGS   73 (336)
T ss_dssp             -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcch
Confidence            45666777777777766532   11 13577888888999999999887654321               1223344444


Q ss_pred             HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCC--------hhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCC
Q 010342           83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY--------VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR  154 (512)
Q Consensus        83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  154 (512)
                      |-.+..-+++..... ++.++......|+..+.....        +++|++.-.... ....-++.....+...|.+.++
T Consensus        74 g~DL~~llvevy~~~-~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~  151 (336)
T 3lpz_A           74 GGDLAVLLVDTFRQA-GQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGE  151 (336)
T ss_dssp             HHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCC
Confidence            443333333333222 444554444444444443332        111222211111 1122344555666677777777


Q ss_pred             hhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 010342          155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF  234 (512)
Q Consensus       155 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  234 (512)
                      +.+|...|-    .|-.+++..|..++..+...+...              .++...-..++ .|.-.++...|..+++.
T Consensus       152 ~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~  212 (336)
T 3lpz_A          152 FEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRI  212 (336)
T ss_dssp             HHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHH
Confidence            777776662    133333455655554443333211              11222222233 34455677777776665


Q ss_pred             HH
Q 010342          235 ML  236 (512)
Q Consensus       235 ~~  236 (512)
                      ..
T Consensus       213 f~  214 (336)
T 3lpz_A          213 FT  214 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=86.39  E-value=15  Score=31.62  Aligned_cols=190  Identities=16%  Similarity=0.127  Sum_probs=96.6

Q ss_pred             ChhhHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHH
Q 010342          259 NPTELLNVLVFMLQTQCQ----PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA  334 (512)
Q Consensus       259 ~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  334 (512)
                      ..++.+.-++.-++.|--    --..+|.++..-|.+.+++++|++++..-.                ..+.+.|+...|
T Consensus        11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA----------------~~ll~~~Q~~sg   74 (336)
T 3lpz_A           11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS----------------QTLLRSGQGGSG   74 (336)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHCCCcchH
Confidence            344444444444444411    012345566666666677777766654432                234555665555


Q ss_pred             HHHH---HhhcccCCCCCChhhHHHHHHHHHccCCHH-HHHHHHHHHHh----CC--CCCChHhHHHHHHHHHhcCCHHH
Q 010342          335 LNLL---YQVMPQRGYSPGIVTYNAVLRGLFRLRRVE-EAKEVFNCMLG----IG--VVADSTTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       335 ~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~  404 (512)
                      .++.   -+.....++++|......++..+......+ .=..+.+++.+    .|  ..-++.....+...|.+.+++.+
T Consensus        75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~  154 (336)
T 3lpz_A           75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA  154 (336)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence            4433   233445666777777777777665544311 11223333322    12  23355666677777777777777


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      |...|=    .+..++...+..++.-+...+...++              +...- -.+--|.-.++...|..+++...
T Consensus       155 Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfia-RaVL~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          155 AEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCA-RAVLPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHH-HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHH-HHHHHHHHhCCHHHHHHHHHHHH
Confidence            776662    22233334554444444333321111              11122 22334455788888888776655

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=85.50  E-value=5.7  Score=29.96  Aligned_cols=70  Identities=14%  Similarity=0.106  Sum_probs=39.0

Q ss_pred             cCCCCCcc--hHHHHHHHHhccCchhHHHHHHHHHHhCC-CCCch-------hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010342          168 RGLTPSLV--SYNSIVHGLCKHGGCMRAYQLLEEGIQFG-YLPSE-------HTYKVLVEGLCGESDLEKARKVLQFMLS  237 (512)
Q Consensus       168 ~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~  237 (512)
                      .|+.|...  ++..-++.+...+.++.|+-+...+.... ..|+.       .++..+.+++...|++..|...|++...
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            35555443  34445666777788888777777655421 12221       2455666777778888888888877543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.20  E-value=5.6  Score=32.84  Aligned_cols=54  Identities=11%  Similarity=0.147  Sum_probs=37.0

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC   58 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~   58 (512)
                      +++.|++++|++....-++..+. |...-..+++.++-.|++++|.+-++-..+.
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            46677777777777766666333 6666677777777777777777777766653

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.67  E-value=32  Score=32.94  Aligned_cols=286  Identities=14%  Similarity=0.051  Sum_probs=138.0

Q ss_pred             HHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhH--HHHHHHHHHcCCCCCcchHHHHHHHH
Q 010342          107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA--SRVVYVMRKRGLTPSLVSYNSIVHGL  184 (512)
Q Consensus       107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~g~~p~~~~~~~l~~~~  184 (512)
                      -.....+....|+..+|......+-..+. .....+..++..+.+.|.....  .+-++.+...|   +...-..++...
T Consensus       105 ~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l  180 (618)
T 1qsa_A          105 QCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM  180 (618)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC
Confidence            34456667777887777766666544443 3445677777777766655432  22223333322   111111111111


Q ss_pred             -----------hc-cCchhHHHHHHHHHHhCCCCCchh---hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc---c
Q 010342          185 -----------CK-HGGCMRAYQLLEEGIQFGYLPSEH---TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR---I  246 (512)
Q Consensus       185 -----------~~-~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~  246 (512)
                                 .. ..+...+......     ..++..   .+...+.-..+ .+.+.|...+..........+..   .
T Consensus       181 ~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~  254 (618)
T 1qsa_A          181 PADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQEL  254 (618)
T ss_dssp             CGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHH
Confidence                       00 0011111111110     111111   11222222333 37788888888776433222211   2


Q ss_pred             HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010342          247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL  326 (512)
Q Consensus       247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (512)
                      ...+.......+...++...+.......  .+.....-.+....+.|+++.|...|+.|....  .......--+..++.
T Consensus       255 ~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~--~~~~r~~YW~~ra~~  330 (618)
T 1qsa_A          255 RDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA--KEKDEWRYWQADLLL  330 (618)
T ss_dssp             HHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG--GGSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc--cccHhHHHHHHHHHH
Confidence            2222223333443445556666544432  233334444455556789999999998886532  223444556666777


Q ss_pred             hcCCHHHHHHHHHhhcccC-----------CCC-------CCh---h-----hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010342          327 NVGRIQEALNLLYQVMPQR-----------GYS-------PGI---V-----TYNAVLRGLFRLRRVEEAKEVFNCMLGI  380 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~~-----------~~~-------~~~---~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~  380 (512)
                      ..|+.++|..+|.+.....           |.+       ++.   .     .-...+..+...|....|...+..+...
T Consensus       331 ~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~  410 (618)
T 1qsa_A          331 ERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS  410 (618)
T ss_dssp             HTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence            8888888888877654211           100       000   0     0112233455677777777777776653


Q ss_pred             CCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 010342          381 GVVADSTTYAIVIDGLCESNQLDEAKRFW  409 (512)
Q Consensus       381 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  409 (512)
                         .+......+.......|..+.+....
T Consensus       411 ---~~~~~~~~la~~a~~~~~~~~~v~~~  436 (618)
T 1qsa_A          411 ---KSKTEQAQLARYAFNNQWWDLSVQAT  436 (618)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence               12222333444444555555554443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.04  E-value=12  Score=34.01  Aligned_cols=61  Identities=8%  Similarity=-0.086  Sum_probs=33.2

Q ss_pred             hHHHHHHHHhccCchhHHHHHHHHHHhC--CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010342          176 SYNSIVHGLCKHGGCMRAYQLLEEGIQF--GYLPSEHTYKVLVEGLCGESDLEKARKVLQFML  236 (512)
Q Consensus       176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  236 (512)
                      +...+...|.+.|+++.|.+.+.++...  +...-...+..+++.+...+++..+...+.++.
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~  195 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN  195 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4445555555666666666666655543  112223445555566666666666666665553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	512
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.65
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.25
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.21
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.2
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.18
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.12
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.09
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.06
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.79
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.74
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.69
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.61
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.61
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.57
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.57
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.54
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.48
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.44
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.42
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.38
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.36
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.22
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.21
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.17
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.13
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.05
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.02
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.02
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.97
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.85
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.83
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.8
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.78
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.68
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.4
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.07
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.89
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.69
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.67
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.47
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.98
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.91
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.84
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.58
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.45
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.15
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.51

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-23  Score=188.65  Aligned_cols=383  Identities=11%  Similarity=0.054  Sum_probs=285.5

Q ss_pred             HHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc
Q 010342          110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG  189 (512)
Q Consensus       110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~  189 (512)
                      +...+.+.|++++|.+.++++.+..+ .+..++..+..++.+.|++++|...|+...+..+. +..+|..+..++...|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence            44556666777777777777665443 34556667777777888888888888877765432 45677777888888888


Q ss_pred             hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHH
Q 010342          190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF  269 (512)
Q Consensus       190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  269 (512)
                      +++|.+.+....+.. +.+..............+....+.......... ..................+....+...+..
T Consensus        83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-NPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccccchhhhhHHHHHH
Confidence            888888888777654 333344444444444455555555555444432 233344445555566667777777777777


Q ss_pred             HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCC
Q 010342          270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP  349 (512)
Q Consensus       270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  349 (512)
                      .....+. +...+..+...+...|+++.|...+++..+..  +.+...+..+...+...|++++|...+.+.....  +.
T Consensus       161 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~  235 (388)
T d1w3ba_         161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PN  235 (388)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TT
T ss_pred             hhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--hh
Confidence            6665432 56677788888889999999999999887765  5677888888999999999999999998865443  44


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK  429 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  429 (512)
                      +...+..+...+.+.|++++|...|++..+.. +.+..++..+..++...|++++|...++...... +.+...+..+..
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  313 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN  313 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence            56677778888999999999999999988864 4567788889999999999999999999887654 667788889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhccCCC
Q 010342          430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN  506 (512)
Q Consensus       430 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~  506 (512)
                      .+...|++++|++.+++.++.. +-+..++..+..++.+.|++++|.+.+++..+  +.|+ ...|..|..+|.+.||
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999988764 22567788899999999999999999999987  5665 5678888888888775

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-22  Score=181.82  Aligned_cols=380  Identities=12%  Similarity=0.003  Sum_probs=186.5

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA   83 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a   83 (512)
                      +.+.|++++|++.|+++.+..+. ++.++..+...+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A   86 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccc
Confidence            34556666666666666555222 45556666666666666666666666655532 22344555555555555555555


Q ss_pred             HHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH
Q 010342           84 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY  163 (512)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  163 (512)
                      ...+....+.                                        .. ................+....+.....
T Consensus        87 ~~~~~~~~~~----------------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (388)
T d1w3ba_          87 IEHYRHALRL----------------------------------------KP-DFIDGYINLAAALVAAGDMEGAVQAYV  125 (388)
T ss_dssp             HHHHHHHHHH----------------------------------------CT-TCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred             cccccccccc----------------------------------------cc-ccccccccccccccccccccccccccc
Confidence            5544444332                                        11 111122222233333333334443333


Q ss_pred             HHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 010342          164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR  243 (512)
Q Consensus       164 ~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  243 (512)
                      ....... ................+....+...+....... +.+...+..+...+...|+++.|...++...+.. +. 
T Consensus       126 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~-  201 (388)
T d1w3ba_         126 SALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN-  201 (388)
T ss_dssp             HHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT-
T ss_pred             ccccccc-ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cc-
Confidence            3333221 133333344444445555555555555554432 3344555555666666666666666666655321 11 


Q ss_pred             cccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Q 010342          244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF  323 (512)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  323 (512)
                                                        +...+..+...+...|++++|...++......  +.+...+..+..
T Consensus       202 ----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~  245 (388)
T d1w3ba_         202 ----------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLAC  245 (388)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             ----------------------------------cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--hhHHHHHHHHHH
Confidence                                              23334444444444444444444444444333  233444444444


Q ss_pred             HHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHH
Q 010342          324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD  403 (512)
Q Consensus       324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  403 (512)
                      .+.+.|++++|...|++.+...  +.+...+..+...+...|++++|...++...... +.+...+..+...+...|+++
T Consensus       246 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  322 (388)
T d1w3ba_         246 VYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHH
Confidence            4455555555555554443222  2233444445555555555555555555554432 344445555555555556666


Q ss_pred             HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010342          404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM  471 (512)
Q Consensus       404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  471 (512)
                      +|...++++++.. +.+..++..+..+|...|++++|.+.|++.++..+ -+...|..+..++.+.||
T Consensus       323 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence            6666666555432 33444555566666666666666666666555421 134455556665555543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.4e-14  Score=121.95  Aligned_cols=147  Identities=12%  Similarity=-0.023  Sum_probs=107.4

Q ss_pred             hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH
Q 010342          327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK  406 (512)
Q Consensus       327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  406 (512)
                      ..+...+|...+.+.+......++...+..+...+...|++++|...+++..... +.+...+..+..+|...|++++|.
T Consensus       148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~  226 (323)
T d1fcha_         148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV  226 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHH
Confidence            3455666777777766555445566677778888888999999999999887753 446778888889999999999999


Q ss_pred             HHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCCChhhHHHHHHHHHhcCCHHHH
Q 010342          407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG----------VTPNIVCYNVVIDGACKLSMKREA  475 (512)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~p~~~~~~~l~~~~~~~g~~~~a  475 (512)
                      +.++++++.. +.+..++..++.+|.+.|++++|++.|++.++..          .......|..+-.++...|+.+.+
T Consensus       227 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         227 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999888754 4567788889999999999999999998887631          111123455566666666665544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.5e-14  Score=121.91  Aligned_cols=271  Identities=10%  Similarity=0.006  Sum_probs=181.2

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC
Q 010342          144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES  223 (512)
Q Consensus       144 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  223 (512)
                      .....+.+.|++++|...|+...+..+. +..+|..+..++...|++++|...+.++.+.. +-+...+..+...+...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            3556677888888888888888876433 56788888888888888988888888887754 346677888888888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010342          224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN  303 (512)
Q Consensus       224 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  303 (512)
                      ++++|.+.++......... ............                    ..+.......+..+...+.+.+|...+.
T Consensus       102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTT-GGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccch-HHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            9998888888876532211 111000000000                    0011111112223344456677788877


Q ss_pred             HHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 010342          304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV  383 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  383 (512)
                      +.........+...+..+...+...|++++|+..+.+.+...  +-+...|..+...+...|++++|...|++..+.. +
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p  237 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P  237 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence            776544334566777788888888899999999888876544  3456678888888889999999999998888753 4


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC----------CCCCHHhHHHHHHHHHhcCCHHHH
Q 010342          384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS----------NIHDNYVYAAMIKGLCRSGKIHEA  440 (512)
Q Consensus       384 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a  440 (512)
                      -+..++..+..+|.+.|++++|...|+++++..          .......|..+-.++...|+.+.+
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            456678888899999999999999998876421          011223455555555555554433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.9e-10  Score=96.36  Aligned_cols=238  Identities=7%  Similarity=0.083  Sum_probs=141.4

Q ss_pred             HHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCH
Q 010342          253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI  331 (512)
Q Consensus       253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  331 (512)
                      .+.+.+.+++|+..++.+++..+. +...|+....++...| ++++|+..++...+..  +.+..+|..+...+.+.|++
T Consensus        52 ~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~~~~l~~~  128 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWLRDP  128 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHHHHhhccH
Confidence            333444445555555555444322 5556666666666655 4777777777776655  56677777777777777777


Q ss_pred             HHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC------HHHH
Q 010342          332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------LDEA  405 (512)
Q Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a  405 (512)
                      ++|+..+.+++...  +.+...|..+...+...|++++|+..++.+.+.. +.+...|+.+..++.+.+.      +++|
T Consensus       129 ~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~a  205 (315)
T d2h6fa1         129 SQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE  205 (315)
T ss_dssp             TTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred             HHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHh
Confidence            77777777766544  4456677777777777777777777777777754 4455566666655555444      4667


Q ss_pred             HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhc--C-------CHHHH
Q 010342          406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKL--S-------MKREA  475 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g-------~~~~a  475 (512)
                      ...+..+++.. +.+...|..+...+... ..+++.+.++...+....+ +...+..++..|...  +       .+++|
T Consensus       206 i~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka  283 (315)
T d2h6fa1         206 VQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA  283 (315)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            77777776654 45666666665555443 3566667776666543332 334455555555432  2       24455


Q ss_pred             HHHHHHHHHCCCCCC-hHHHHHHHH
Q 010342          476 YQILREMRKNGLNPD-AVTWRILDK  499 (512)
Q Consensus       476 ~~~~~~m~~~~~~p~-~~~~~~l~~  499 (512)
                      .++++.+... +.|- ..-|+.+.+
T Consensus       284 ~~l~~~l~~~-~DpiR~~yw~~~~~  307 (315)
T d2h6fa1         284 LELCEILAKE-KDTIRKEYWRYIGR  307 (315)
T ss_dssp             HHHHHHHHHT-TCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHh-cCHHHHHHHHHHHH
Confidence            5555554432 3332 234555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.9e-09  Score=95.14  Aligned_cols=278  Identities=14%  Similarity=0.040  Sum_probs=161.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS------LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN  104 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  104 (512)
                      ........+...|++++|+.++++..+..  |+.      .++..+..++...|++++|...+.++++..+.........
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            34445666778899999999999887753  332      3566667788888999999888888877666554433444


Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHhcCC----CCC---CCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC----CC
Q 010342          105 AAFANLVDSLCREGYVNEVFRIAEDMPQ----GKS---VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT----PS  173 (512)
Q Consensus       105 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----p~  173 (512)
                      ..+..+...+...|++..+...+.....    ...   ......+..+...+...|+++.+...+.........    ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  171 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  171 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence            5566667777777888777776665322    111   111123444556666777777777777666553211    11


Q ss_pred             cchHHHHHHHHhccCchhHHHHHHHHHHhC----CCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccH
Q 010342          174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLP--SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC  247 (512)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  247 (512)
                      ..++......+...++...+...+.+....    +..+  ....+..+...+...|+++.|...++.........+    
T Consensus       172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----  247 (366)
T d1hz4a_         172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN----  247 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC----
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc----
Confidence            223344445555566666666666554432    1011  112334444555566666666666655432211110    


Q ss_pred             HHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCcHHHHHHHHH
Q 010342          248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA----GKFCAPDAVTFTTIIF  323 (512)
Q Consensus       248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~  323 (512)
                                                  ......+..+..++...|++++|...+++...    .+..+.....+..+..
T Consensus       248 ----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  299 (366)
T d1hz4a_         248 ----------------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ  299 (366)
T ss_dssp             ----------------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence                                        11223445566777788888888888777652    1211223445666677


Q ss_pred             HHhhcCCHHHHHHHHHhhc
Q 010342          324 GLLNVGRIQEALNLLYQVM  342 (512)
Q Consensus       324 ~~~~~~~~~~a~~~~~~~~  342 (512)
                      .+...|++++|.+.+.+.+
T Consensus       300 ~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         300 LYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            7777777777777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.8e-09  Score=92.76  Aligned_cols=179  Identities=9%  Similarity=-0.042  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccC-chhHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 010342          141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG-GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL  219 (512)
Q Consensus       141 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  219 (512)
                      +++.+...+.+.+.+++|+++++.+.+..+. +...|+....++...| ++++|+..++.+++.. +-+..+|..+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence            3444555566666677777777777665333 4456666666665544 3667777776666543 34556666666666


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-----
Q 010342          220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR-----  294 (512)
Q Consensus       220 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----  294 (512)
                      .+.|++++|...++++.+. .+.+...|..+...+...+++++|+..+..+++..+. +...|+.+..++.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhh-hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence            6667777777776666643 3333445555555555555555555555555554432 44445544444443333     


Q ss_pred             -HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010342          295 -IEEALKVLNDMVAGKFCAPDAVTFTTIIFGL  325 (512)
Q Consensus       295 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  325 (512)
                       +++|+..+....+..  +.+...|..+...+
T Consensus       201 ~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll  230 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLV--PHNESAWNYLKGIL  230 (315)
T ss_dssp             HHHHHHHHHHHHHHHS--TTCHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhC--CCchHHHHHHHHHH
Confidence             455555555555443  34444444444333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.1e-08  Score=90.00  Aligned_cols=274  Identities=11%  Similarity=-0.010  Sum_probs=135.5

Q ss_pred             HHHHHhccCchhHHHHHHHHHHhCCCCCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 010342          180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPS----EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC  255 (512)
Q Consensus       180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (512)
                      ....+...|++++|++++++..+.....+    ...+..+...+...|++++|...++.........+..          
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----------   87 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW----------   87 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch----------
Confidence            34445567777777777777665421111    1245555666667777777777776654321100000          


Q ss_pred             ccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC--CCCcHHHHHHHHHHHhhcC
Q 010342          256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG----KF--CAPDAVTFTTIIFGLLNVG  329 (512)
Q Consensus       256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~  329 (512)
                                          ......+..+...+...|++..+...+......    ..  .......+..+...+...|
T Consensus        88 --------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~  147 (366)
T d1hz4a_          88 --------------------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA  147 (366)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence                                001122333444555556666665555544321    00  0111223344455556666


Q ss_pred             CHHHHHHHHHhhcccCCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC----hHhHHHHHHHHHhcC
Q 010342          330 RIQEALNLLYQVMPQRGY---SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVAD----STTYAIVIDGLCESN  400 (512)
Q Consensus       330 ~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g  400 (512)
                      +++.+...+.........   ......+......+...++...+...+.+....  .....    ...+..+...+...|
T Consensus       148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T d1hz4a_         148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG  227 (366)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence            666666665554322211   112223333444455566666666555544331  00111    123344455566666


Q ss_pred             CHHHHHHHHHHhhcCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-hhhHHHHHHHHHhcCCH
Q 010342          401 QLDEAKRFWDDIVWPSNIH---DNYVYAAMIKGLCRSGKIHEAVHFLYELVD----SGVTPN-IVCYNVVIDGACKLSMK  472 (512)
Q Consensus       401 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~  472 (512)
                      ++++|...++.........   ....+..+..++...|++++|...+++...    .+..|+ ...+..+...+.+.|++
T Consensus       228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  307 (366)
T d1hz4a_         228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK  307 (366)
T ss_dssp             CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence            6666666666655432211   123344556666666777777666666542    222232 33455566666667777


Q ss_pred             HHHHHHHHHHH
Q 010342          473 REAYQILREMR  483 (512)
Q Consensus       473 ~~a~~~~~~m~  483 (512)
                      ++|.+.+++..
T Consensus       308 ~~A~~~l~~Al  318 (366)
T d1hz4a_         308 SDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77766666654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=2.2e-09  Score=92.27  Aligned_cols=163  Identities=8%  Similarity=-0.019  Sum_probs=81.5

Q ss_pred             HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH-H
Q 010342          247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG-L  325 (512)
Q Consensus       247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~  325 (512)
                      +..++......|+.+.|..+++.+++.........|...+..+.+.|+++.|.++|+...+..  +.+...|...... +
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e~  179 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence            333333334444444444444444433222223345555555666666666666666665544  2233333332222 2


Q ss_pred             hhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC--hHhHHHHHHHHHhcCCH
Q 010342          326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVAD--STTYAIVIDGLCESNQL  402 (512)
Q Consensus       326 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~  402 (512)
                      ...|+.+.|..+|+..+...  +.++..|...+..+...|+.+.|..+|++..+.. .+|+  ...|...+..-...|+.
T Consensus       180 ~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~  257 (308)
T d2onda1         180 YCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence            23455666666666655432  3344556666666666666666666666655532 2221  22455555555556666


Q ss_pred             HHHHHHHHHhh
Q 010342          403 DEAKRFWDDIV  413 (512)
Q Consensus       403 ~~a~~~~~~~~  413 (512)
                      +.+..+++++.
T Consensus       258 ~~~~~~~~r~~  268 (308)
T d2onda1         258 ASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=8.7e-09  Score=88.40  Aligned_cols=187  Identities=7%  Similarity=0.001  Sum_probs=145.7

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHH
Q 010342          293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAK  371 (512)
Q Consensus       293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~  371 (512)
                      +..++|..+|++...... +.+...|...+......|+.+.|..+|.+++...  +.+ ...|...+..+.+.|+.+.|.
T Consensus        78 ~~~~~a~~i~~ral~~~~-p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~--~~~~~~~w~~~~~~~~~~~~~~~ar  154 (308)
T d2onda1          78 LFSDEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cchHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHcCChHHHH
Confidence            345788889998886542 5566778888888889999999999998876432  222 346788888888999999999


Q ss_pred             HHHHHHHhCCCCCChHhHHHHHHH-HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          372 EVFNCMLGIGVVADSTTYAIVIDG-LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .+|+.+.+.+ +.+...|...... +...|+.+.|..+|+.+++.. +.+...|...+..+...|+++.|..+|++.++.
T Consensus       155 ~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         155 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            9999998865 4455555544433 344689999999999998763 667788999999999999999999999998886


Q ss_pred             C-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          451 G-VTPN--IVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       451 ~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      . ..|+  ...|...+..-...|+.+.+..+++++.+
T Consensus       233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4 2333  34788888887889999999999999875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=8.4e-10  Score=92.50  Aligned_cols=61  Identities=13%  Similarity=0.055  Sum_probs=26.3

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010342          279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV  341 (512)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  341 (512)
                      +.+|..+..++.+.|++++|+..|++..+..  +.+..++..+..++...|++++|...+.+.
T Consensus        71 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  131 (259)
T d1xnfa_          71 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAF  131 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3344444444444444444444444444432  223333444444444444444444444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=3e-10  Score=99.23  Aligned_cols=231  Identities=7%  Similarity=-0.065  Sum_probs=137.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC--ChhhHHHHHHHHHhcCCCCChhhHH-HHHHHHHhcCCHHHHH
Q 010342          223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK--NPTELLNVLVFMLQTQCQPDVITLN-TVINGFCKMGRIEEAL  299 (512)
Q Consensus       223 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~  299 (512)
                      |.+++|..+++.+... .+.+...+.....++...+  +.+++...+..+.+..++ +...+. .....+...+.++.|+
T Consensus        87 ~~~~~al~~~~~~l~~-~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al  164 (334)
T d1dcea1          87 ALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEEL  164 (334)
T ss_dssp             HHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHH
Confidence            3455566666665542 3333444444444444433  355666666666555332 344433 3345666678888888


Q ss_pred             HHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010342          300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG  379 (512)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  379 (512)
                      ..++.+....  +.+...|..+...+...|++++|...+.+.+..   .|+   .......+...+..+.+...+.....
T Consensus       165 ~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         165 AFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             HHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            8888777765  567777777777777777777665544332211   111   11223334455666667777776666


Q ss_pred             CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-Chhh
Q 010342          380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVC  458 (512)
Q Consensus       380 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~  458 (512)
                      .. +++...+..+...+...++.++|...+.+....+ +.+..++..++.++...|++++|.+.++++.+.  .| +...
T Consensus       237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y  312 (334)
T d1dcea1         237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAY  312 (334)
T ss_dssp             SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHH
Confidence            43 4455556666667777778888888888776543 345566777777888888888888888888775  34 3345


Q ss_pred             HHHHHHHHH
Q 010342          459 YNVVIDGAC  467 (512)
Q Consensus       459 ~~~l~~~~~  467 (512)
                      |..|...+.
T Consensus       313 ~~~L~~~~~  321 (334)
T d1dcea1         313 LDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555544444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.4e-09  Score=91.15  Aligned_cols=122  Identities=11%  Similarity=-0.126  Sum_probs=74.9

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010342          211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC  290 (512)
Q Consensus       211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  290 (512)
                      +|..+..+|.+.|++++|...|++..+. .+.+..++..+..++...|++++|+..|+...+..+. +...+..+..++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhcc-CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence            4445555666666666666666666543 3334555666666666666666666666666665433 4566777788888


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 010342          291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN  336 (512)
Q Consensus       291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  336 (512)
                      ..|++++|...|+...+..  +.+......+...+.+.+....+..
T Consensus       117 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~  160 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEV  160 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHH
Confidence            8888888888888887654  3444444444444444444444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=3e-10  Score=99.27  Aligned_cols=233  Identities=7%  Similarity=-0.091  Sum_probs=140.1

Q ss_pred             CchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhcc--CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHH
Q 010342          188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE--SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN  265 (512)
Q Consensus       188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  265 (512)
                      |++++|+.+++.+.+.. +.+...|..+..++...  ++++++...+..+.+.........+......+...+.++.|+.
T Consensus        87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH
Confidence            34566666666666543 33444554444444333  3466777777776654222222223344455566677777777


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC
Q 010342          266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR  345 (512)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  345 (512)
                      .++..++..+. +...|..+..++.+.|++++|...+.......   |.   .......+...+..+++...+...+...
T Consensus       166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~  238 (334)
T d1dcea1         166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL---LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (334)
T ss_dssp             HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH---HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH---HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence            77766666543 66677777777777777766655444333211   11   1112233444555566666666654433


Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH
Q 010342          346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA  425 (512)
Q Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  425 (512)
                        +++...+..+...+...++.++|...+.+..... +.+..++..+..+|...|++++|.+.++.+++.+ |.+..-|.
T Consensus       239 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~  314 (334)
T d1dcea1         239 --AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLD  314 (334)
T ss_dssp             --CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHH
T ss_pred             --cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHH
Confidence              3444555566667777788888888888887653 3455677888888999999999999999988754 33444556


Q ss_pred             HHHHHHH
Q 010342          426 AMIKGLC  432 (512)
Q Consensus       426 ~l~~~~~  432 (512)
                      .|...+.
T Consensus       315 ~L~~~~~  321 (334)
T d1dcea1         315 DLRSKFL  321 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5655444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.2e-07  Score=71.14  Aligned_cols=85  Identities=13%  Similarity=0.013  Sum_probs=44.6

Q ss_pred             HHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 010342          323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL  402 (512)
Q Consensus       323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  402 (512)
                      ..+...|+++.|++.|.++     .+|++.+|..+..+|...|++++|+..|++..+.. +.+...|..+..+|.+.|++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            3344555555555555442     13444455555555555555555555555555543 33444555555555555555


Q ss_pred             HHHHHHHHHhh
Q 010342          403 DEAKRFWDDIV  413 (512)
Q Consensus       403 ~~a~~~~~~~~  413 (512)
                      ++|...|++.+
T Consensus        87 ~~A~~~~~kAl   97 (192)
T d1hh8a_          87 DLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.7e-07  Score=69.92  Aligned_cols=83  Identities=12%  Similarity=0.032  Sum_probs=37.8

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHH
Q 010342          289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE  368 (512)
Q Consensus       289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  368 (512)
                      +...|+++.|++.|+++.     +++..+|..+..++...|++++|++.|.+.++..  +.+...|..+..++.+.|+++
T Consensus        15 ~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHH
Confidence            344445555544444321     3444444444444555555555555554444332  223334444444444555555


Q ss_pred             HHHHHHHHHH
Q 010342          369 EAKEVFNCML  378 (512)
Q Consensus       369 ~a~~~~~~~~  378 (512)
                      +|...|++..
T Consensus        88 ~A~~~~~kAl   97 (192)
T d1hh8a_          88 LAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5554444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.8e-07  Score=65.44  Aligned_cols=96  Identities=15%  Similarity=0.079  Sum_probs=65.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010342          392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM  471 (512)
Q Consensus       392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  471 (512)
                      -...+...|++++|...|.++++.. +.+...|..+..+|...|++++|+..+.+.++.+ +.+...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            3455666777777777777776654 5566667777777777777777777777777664 3366667777777777777


Q ss_pred             HHHHHHHHHHHHHCCCCCCh
Q 010342          472 KREAYQILREMRKNGLNPDA  491 (512)
Q Consensus       472 ~~~a~~~~~~m~~~~~~p~~  491 (512)
                      +++|+..+++..+  +.|+.
T Consensus        87 ~~~A~~~~~~a~~--~~p~~  104 (117)
T d1elwa_          87 FEEAKRTYEEGLK--HEANN  104 (117)
T ss_dssp             HHHHHHHHHHHHT--TCTTC
T ss_pred             HHHHHHHHHHHHH--hCCCC
Confidence            7777777777776  34543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2.3e-07  Score=78.49  Aligned_cols=137  Identities=13%  Similarity=-0.033  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHC----GVLP-NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA  105 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  105 (512)
                      .|......|...+++++|.+.|.+..+.    +.++ -..+|..+..+|.+.|++++|...+.+.++..+..+.......
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            3666677788888888888888877552    1111 1246777778888888888888888777776665544444445


Q ss_pred             hHHHHHHHHHc-cCChhHHHHHHHhcCCC----CCCC-cchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010342          106 AFANLVDSLCR-EGYVNEVFRIAEDMPQG----KSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRK  167 (512)
Q Consensus       106 ~~~~l~~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  167 (512)
                      ++..+...|.. .|++++|.+.+++..+.    +..+ ...++..+...+...|++++|...|+....
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            55556665533 47777777666654321    1100 112344455555555555555555555544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4e-07  Score=64.63  Aligned_cols=93  Identities=10%  Similarity=-0.007  Sum_probs=74.0

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK  436 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  436 (512)
                      -...+...|++++|+..|++..+.. |.+...|..+..+|...|++++|...+..+++.+ +.+...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            4556777888888888888887764 5566778888888888888888888888888765 6677788888888888888


Q ss_pred             HHHHHHHHHHHHHCC
Q 010342          437 IHEAVHFLYELVDSG  451 (512)
Q Consensus       437 ~~~a~~~~~~~~~~~  451 (512)
                      +++|+..|++.++..
T Consensus        87 ~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          87 FEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            888888888888753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=4.1e-06  Score=70.58  Aligned_cols=138  Identities=9%  Similarity=0.021  Sum_probs=73.8

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHH
Q 010342           71 VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC  150 (512)
Q Consensus        71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  150 (512)
                      ...|...+++++|...+.+..+......+......+|..+...|.+.|++++|.+.++..               +..+.
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a---------------~~~~~  108 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA---------------IQIFT  108 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh---------------hHHhh
Confidence            445667777888877777766554433222222344555555555555555555544432               11222


Q ss_pred             hcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh-ccCchhHHHHHHHHHHhC----CCCC-chhhHHHHHHHHhccCC
Q 010342          151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC-KHGGCMRAYQLLEEGIQF----GYLP-SEHTYKVLVEGLCGESD  224 (512)
Q Consensus       151 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~  224 (512)
                      ..|+...+               ..++..+...|. ..|++++|.+.++++.+.    +.++ ...++..+...+...|+
T Consensus       109 ~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~  173 (290)
T d1qqea_         109 HRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ  173 (290)
T ss_dssp             HTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hcccchhH---------------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh
Confidence            22222222               123334444443 357777777777766532    1111 12356667777777777


Q ss_pred             HHHHHHHHHHHHhC
Q 010342          225 LEKARKVLQFMLSK  238 (512)
Q Consensus       225 ~~~a~~~~~~~~~~  238 (512)
                      +++|...|+++...
T Consensus       174 y~~A~~~~~~~~~~  187 (290)
T d1qqea_         174 YIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777776653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=7.1e-07  Score=67.55  Aligned_cols=120  Identities=10%  Similarity=-0.048  Sum_probs=88.7

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010342          356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG  435 (512)
Q Consensus       356 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  435 (512)
                      .....|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|+++++.+ +.+..+|..++.++...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence            34556778899999999998888865 5677788888889999999999999999988765 567778888889999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhcCCHHHHHHH
Q 010342          436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDG--ACKLSMKREAYQI  478 (512)
Q Consensus       436 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~  478 (512)
                      ++++|...+++.....+. +...+..+..+  ....+.++++...
T Consensus        93 ~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999988886422 34444444333  2333445555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.4e-07  Score=67.18  Aligned_cols=100  Identities=15%  Similarity=0.137  Sum_probs=62.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 010342          390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPN-IVCYNVVIDG  465 (512)
Q Consensus       390 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~  465 (512)
                      ..+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.++   +++|+.+++++...+..|+ ..+|..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            345566666677777777777776654 5566666666666665443   3457777777665543333 2356666777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChH
Q 010342          466 ACKLSMKREAYQILREMRKNGLNPDAV  492 (512)
Q Consensus       466 ~~~~g~~~~a~~~~~~m~~~~~~p~~~  492 (512)
                      |.+.|++++|.+.|+++.+  +.|+..
T Consensus        82 y~~~g~~~~A~~~~~~aL~--~~P~~~  106 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ--TEPQNN  106 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence            7777777777777777766  455543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=2e-07  Score=74.06  Aligned_cols=99  Identities=14%  Similarity=0.023  Sum_probs=59.3

Q ss_pred             CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 010342          313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV  392 (512)
Q Consensus       313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  392 (512)
                      |+...+......+.+.|++++|+..|.+.+...  +.++..|..+..+|.+.|++++|+..|+...+.. |-+..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence            445555555666666666666666666655443  3445556666666666666666666666666542 3344556666


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhc
Q 010342          393 IDGLCESNQLDEAKRFWDDIVW  414 (512)
Q Consensus       393 ~~~~~~~g~~~~a~~~~~~~~~  414 (512)
                      ..+|...|++++|...|+++.+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            6666666666666666666543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=4.9e-07  Score=71.75  Aligned_cols=100  Identities=12%  Similarity=-0.053  Sum_probs=88.7

Q ss_pred             CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342          349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI  428 (512)
Q Consensus       349 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  428 (512)
                      |+...+......+.+.|++++|+..|++..+.. |.+...|..+..+|.+.|++++|...++++++.. +.+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            667777788899999999999999999998865 6678889999999999999999999999998764 55677899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 010342          429 KGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       429 ~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .+|...|++++|...|++..+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1e-06  Score=66.60  Aligned_cols=104  Identities=12%  Similarity=0.052  Sum_probs=88.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 010342          390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL  469 (512)
Q Consensus       390 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  469 (512)
                      ......|.+.|++++|...|+++++.+ +.+...|..+..+|...|++++|...|++.++.. +-+...|..++.++...
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence            345667889999999999999999876 6788899999999999999999999999999875 33678999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCh-HHHHHH
Q 010342          470 SMKREAYQILREMRKNGLNPDA-VTWRIL  497 (512)
Q Consensus       470 g~~~~a~~~~~~m~~~~~~p~~-~~~~~l  497 (512)
                      |++++|.+.+++....  .|+. ..+..+
T Consensus        92 g~~~eA~~~~~~a~~~--~p~~~~~~~~l  118 (159)
T d1a17a_          92 GKFRAALRDYETVVKV--KPHDKDAKMKY  118 (159)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHc--CCCCHHHHHHH
Confidence            9999999999999884  5653 333333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.48  E-value=5.9e-05  Score=62.28  Aligned_cols=113  Identities=13%  Similarity=-0.007  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCH
Q 010342          366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKI  437 (512)
Q Consensus       366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~  437 (512)
                      ....+...+......   .+...+..|...|..    ..+...+...++...+.+   +......+...|..    ..++
T Consensus       125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~  198 (265)
T d1ouva_         125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF  198 (265)
T ss_dssp             CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred             hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence            344455555554442   244445555555543    335556666666665543   34444555555544    4578


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 010342          438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACK----LSMKREAYQILREMRKNGL  487 (512)
Q Consensus       438 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~  487 (512)
                      ++|...|.+..+.|   ++..+..|...|.+    ..+.++|.++|++..+.|.
T Consensus       199 ~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         199 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            88888888877766   44555666666654    3367778888888877763

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.44  E-value=9.3e-07  Score=62.05  Aligned_cols=89  Identities=11%  Similarity=-0.028  Sum_probs=50.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010342          392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM  471 (512)
Q Consensus       392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  471 (512)
                      +...+.+.|++++|...+++++... +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+...|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            3445555566666666666655543 3345556666666666666666666666655543 2245555566666666666


Q ss_pred             HHHHHHHHHHH
Q 010342          472 KREAYQILREM  482 (512)
Q Consensus       472 ~~~a~~~~~~m  482 (512)
                      +++|.+.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666665553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.42  E-value=9.8e-07  Score=61.91  Aligned_cols=92  Identities=13%  Similarity=0.002  Sum_probs=76.1

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 010342          355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS  434 (512)
Q Consensus       355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  434 (512)
                      ..+...+.+.|++++|...|++..+.. |-+...|..+..++.+.|++++|...++++++.+ +.+...+..+..+|...
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence            345666788899999999999988864 4567788888899999999999999999988765 66778888899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 010342          435 GKIHEAVHFLYELV  448 (512)
Q Consensus       435 g~~~~a~~~~~~~~  448 (512)
                      |++++|.+.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999888764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.38  E-value=9.8e-05  Score=60.91  Aligned_cols=96  Identities=7%  Similarity=-0.089  Sum_probs=55.8

Q ss_pred             ChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCH
Q 010342          350 GIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDN  421 (512)
Q Consensus       350 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~  421 (512)
                      +...+..+...+..    ..+...+...++...+.|   +......+...|..    ..++++|...|++..+.|   +.
T Consensus       141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~  214 (265)
T d1ouva_         141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG  214 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CH
Confidence            33444444444443    344555666666655543   44444445555544    457777888887777655   34


Q ss_pred             HhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 010342          422 YVYAAMIKGLCR----SGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       422 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  451 (512)
                      ..+..|...|..    ..+.++|.+.|++..+.|
T Consensus       215 ~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         215 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            455556666654    336777777777777666

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.36  E-value=0.00048  Score=57.85  Aligned_cols=132  Identities=10%  Similarity=0.060  Sum_probs=75.7

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 010342          105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL  184 (512)
Q Consensus       105 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  184 (512)
                      .--..+++.|.+.|.++.|..+|..+..         |..++..+.+.+++..|.+.+....      +..+|..+...+
T Consensus        15 ~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l   79 (336)
T d1b89a_          15 AHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC   79 (336)
T ss_dssp             --------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence            3334466667777778778777776543         4557777777888877777665432      556777777777


Q ss_pred             hccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc
Q 010342          185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI  257 (512)
Q Consensus       185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  257 (512)
                      .+..+...+     .+.......++.....++..|-..|.++....+++..... ...+...++.++..|++.
T Consensus        80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            766554332     2222333445556667778888888888888888776532 333445566666666664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.6e-06  Score=60.41  Aligned_cols=96  Identities=13%  Similarity=0.139  Sum_probs=73.5

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCC-HHhHHHHHHH
Q 010342          355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHD-NYVYAAMIKG  430 (512)
Q Consensus       355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~  430 (512)
                      ..++..+...+++++|++.|++....+ +.+..++..+..++.+.++   +++|+.+++++...+..|+ ..++..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            456777778888899999999888865 6677788888888876554   4568888888876543333 2367778888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCC
Q 010342          431 LCRSGKIHEAVHFLYELVDSG  451 (512)
Q Consensus       431 ~~~~g~~~~a~~~~~~~~~~~  451 (512)
                      |.+.|++++|.+.|+++++..
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHHHHHHhC
Confidence            889999999999999988863

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.3e-06  Score=60.19  Aligned_cols=93  Identities=9%  Similarity=0.062  Sum_probs=49.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----hhhHHHHHH
Q 010342          391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT-PN-----IVCYNVVID  464 (512)
Q Consensus       391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~-----~~~~~~l~~  464 (512)
                      .+...+...|++++|...|.+.++.+ +.+..++..+..+|.+.|++++|++.++++++.... +.     ..+|..+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34455555666666666666655543 344555555666666666666666666655542110 00     123444455


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 010342          465 GACKLSMKREAYQILREMRK  484 (512)
Q Consensus       465 ~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .+...+++++|.+.++....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            55556666666666665554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.6e-05  Score=59.20  Aligned_cols=81  Identities=4%  Similarity=-0.146  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      +|+.+..+|.+.|++++|...++..++.+ |.+...+..++.+|...|++++|...|++..+..+. +......+.....
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~  141 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            46667888888999999999999888765 567888888889999999999999999988886422 5555555544444


Q ss_pred             hcC
Q 010342          468 KLS  470 (512)
Q Consensus       468 ~~g  470 (512)
                      +.+
T Consensus       142 ~~~  144 (170)
T d1p5qa1         142 RIR  144 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.9e-05  Score=58.96  Aligned_cols=80  Identities=10%  Similarity=0.024  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010342          353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC  432 (512)
Q Consensus       353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  432 (512)
                      +|+.+..+|.+.|++++|+..++..++.. |.+...+..+..+|...|++++|...|+.+++.+ |.+..+...+..+..
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            56678888899999999999999999864 5577889999999999999999999999998764 445555555555443


Q ss_pred             hc
Q 010342          433 RS  434 (512)
Q Consensus       433 ~~  434 (512)
                      +.
T Consensus       142 ~~  143 (170)
T d1p5qa1         142 RI  143 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.17  E-value=0.0013  Score=55.12  Aligned_cols=135  Identities=12%  Similarity=0.033  Sum_probs=61.6

Q ss_pred             CcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHH
Q 010342          137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV  216 (512)
Q Consensus       137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  216 (512)
                      |+..-...+...|.+.|.++.|..++..+.         -|..++..+.+.+++..|.+.+.+.      -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            333334445566667777777777776433         3455666666777777776666543      2445666666


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 010342          217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM  292 (512)
Q Consensus       217 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  292 (512)
                      ..+........+     .+........+.....++..|-..|.+++...++....... ..+...++.++.+|++.
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence            666655544332     11112222333334445555555555555555555544321 23444455555555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.13  E-value=5.1e-05  Score=56.38  Aligned_cols=68  Identities=12%  Similarity=0.110  Sum_probs=52.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 010342          422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV  492 (512)
Q Consensus       422 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  492 (512)
                      .++..+..+|.+.|++++|++.+++.++.+ +.+..+|..+..++...|++++|...|++..+  +.|+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~  135 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNL  135 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Confidence            356667788888888888888888888765 33677888888888888888888888888887  456543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=9.5e-05  Score=56.30  Aligned_cols=130  Identities=12%  Similarity=0.070  Sum_probs=86.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010342          357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK  436 (512)
Q Consensus       357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  436 (512)
                      ........|++++|...|.+....-  +....        ......+-+...-..+.    ......+..++.++...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~----~~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            3356677889999988888888741  11100        00000001111111111    1123467778889999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCChHHHHHHHHhh
Q 010342          437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVTWRILDKLH  501 (512)
Q Consensus       437 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~l~~~~  501 (512)
                      +++|+..++++++.. +-+...|..++.++.+.|++++|++.|+++.     +.|+.|+..+-...-.+.
T Consensus        83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il  151 (179)
T d2ff4a2          83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL  151 (179)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence            999999999998875 3378889999999999999999999999874     468999887655444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.05  E-value=0.0001  Score=55.66  Aligned_cols=80  Identities=6%  Similarity=-0.091  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC  467 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  467 (512)
                      +|..+..+|.+.|++++|+..++.+++.+ +.+...|..+..++...|++++|...|.++++.. +.+......+.....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34455666666666666666666666554 4556666666666777777777777777666653 224444444444433


Q ss_pred             hc
Q 010342          468 KL  469 (512)
Q Consensus       468 ~~  469 (512)
                      +.
T Consensus       144 ~~  145 (168)
T d1kt1a1         144 KA  145 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.5e-05  Score=55.22  Aligned_cols=100  Identities=15%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc-hHhHHH
Q 010342           31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFAN  109 (512)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~  109 (512)
                      .+..+...+.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|...+.++++..+......+. ..+|..
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45567778888888888888888888764 3466778888888888888888888888887766654333332 234555


Q ss_pred             HHHHHHccCChhHHHHHHHhcC
Q 010342          110 LVDSLCREGYVNEVFRIAEDMP  131 (512)
Q Consensus       110 l~~~~~~~g~~~~a~~~~~~~~  131 (512)
                      +...+...+++++|++.|+...
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal  106 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHH
Confidence            6666666666666666665543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.02  E-value=4.7e-05  Score=57.81  Aligned_cols=62  Identities=6%  Similarity=-0.136  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      .+..+..+|.+.|++++|+..+.++++.. +.+...|..+..++...|++++|++.|++.++.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34445555555666666666666655543 445555555566666666666666666655554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.02  E-value=6.8e-05  Score=55.67  Aligned_cols=74  Identities=11%  Similarity=-0.012  Sum_probs=58.9

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 010342          387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV  462 (512)
Q Consensus       387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  462 (512)
                      .+|..+..+|.+.|++++|...++.+++.+ +.+..+|..++.++...|++++|...|++..+..+. |..+...+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l  141 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            356778888999999999999999988775 667889999999999999999999999998886422 44444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.97  E-value=0.00024  Score=53.57  Aligned_cols=110  Identities=12%  Similarity=0.099  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-------------hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 010342          317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-------------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV  383 (512)
Q Consensus       317 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  383 (512)
                      .+......+.+.|++.+|+..|.+.+......+.             ...|..+..+|.+.|++++|+..++...+.. |
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p   95 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S   95 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence            3444455566666666666666554432221111             1123334445555666666666666655543 4


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010342          384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI  428 (512)
Q Consensus       384 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  428 (512)
                      .+...|..+..++...|++++|...|++++..+ |.+..+...+.
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~  139 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIF  139 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            445555555566666666666666666655443 33333333333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.2e-06  Score=75.25  Aligned_cols=113  Identities=8%  Similarity=-0.054  Sum_probs=51.9

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010342          351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG  430 (512)
Q Consensus       351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  430 (512)
                      ...+..+...+.+.|+.+.|...+.......   ...++..+...+...|++++|...|+++.+.. +.+...|+.|+..
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~  195 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL  195 (497)
T ss_dssp             -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence            3444555555566666666666555544321   12345556666666666666666666666543 4455566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010342          431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK  468 (512)
Q Consensus       431 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  468 (512)
                      +...|+..+|...|.+.+... +|....+..|...+.+
T Consensus       196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence            666666666666666666554 3455555555555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.2e-05  Score=73.31  Aligned_cols=136  Identities=7%  Similarity=-0.090  Sum_probs=82.1

Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHH
Q 010342          292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK  371 (512)
Q Consensus       292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  371 (512)
                      .+.++.++..+.......  +++...+..+...+.+.|+.+.|...+.+.+...    ...++..+...+...+++++|.
T Consensus        99 ~~~Y~~ai~~l~~~~~l~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~LG~l~~~~~~~~~A~  172 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVD--LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----CQHCLVHLGDIARYRNQTSQAE  172 (497)
T ss_dssp             HHHHHHHHHHHTC---------------------------------CCHHHHHH----HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCC--hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHcccHHHHH
Confidence            455666666665544433  4566777888888899999999988776544211    1346777888899999999999


Q ss_pred             HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010342          372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG  435 (512)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  435 (512)
                      ..|++..+.. |.+...|+.|...+...|+..+|...|.+.+... +|-..++..|...+.+..
T Consensus       173 ~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         173 SYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence            9999999864 6677899999999999999999999999999776 677778888887775543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.85  E-value=7.4e-05  Score=56.63  Aligned_cols=81  Identities=11%  Similarity=-0.002  Sum_probs=65.3

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010342          350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK  429 (512)
Q Consensus       350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  429 (512)
                      ....+..+..++.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...|+++++.. +.+..+...+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34567778888999999999999999999865 5677889999999999999999999999998764 456656665555


Q ss_pred             HHH
Q 010342          430 GLC  432 (512)
Q Consensus       430 ~~~  432 (512)
                      +..
T Consensus       154 ~~~  156 (169)
T d1ihga1         154 VKQ  156 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=0.00014  Score=55.26  Aligned_cols=101  Identities=9%  Similarity=0.066  Sum_probs=80.6

Q ss_pred             ccccCcHHHHHHHHHHHHhC--CCC-CC------------------hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010342            4 LCGLSRVGEAHKLFFDMKSR--GHV-PN------------------VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP   62 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~--~~~-~~------------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~   62 (512)
                      ....|++++|.+.|.+.+..  |.. ++                  ...+..+...+.+.|++++|+..++++.+.. +-
T Consensus        21 ~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~   99 (179)
T d2ff4a2          21 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PY   99 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-Cc
Confidence            45789999999999998875  211 11                  1346778888899999999999999998864 34


Q ss_pred             ChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010342           63 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA  105 (512)
Q Consensus        63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  105 (512)
                      +...|..++.++...|+.++|.+.|.++.+.+.+.-++.|+..
T Consensus       100 ~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2         100 REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            7778999999999999999999999998888777778888754

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.80  E-value=5.5e-05  Score=55.46  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=67.6

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc----------CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010342          363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES----------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC  432 (512)
Q Consensus       363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  432 (512)
                      +.+.+++|...|+...+.. |.+...+..+..+|...          +.+++|...++++++.+ +.+..+|..+..+|.
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence            3445666666666666653 44555666666555432          33466777777776654 455666766776666


Q ss_pred             hcC-----------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010342          433 RSG-----------KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL  487 (512)
Q Consensus       433 ~~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  487 (512)
                      ..|           .+++|.+.|++.++.  .|+...+...+..+      .+|.+++.+..+.|+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            544           356777777777765  45544444333333      355666666666554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.78  E-value=2.2e-05  Score=64.19  Aligned_cols=121  Identities=7%  Similarity=-0.041  Sum_probs=69.1

Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 010342          362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV  441 (512)
Q Consensus       362 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  441 (512)
                      .+.|++++|+..+++.++.. |.+...+..+...++..|++++|...++...+.. +.+...+..+...+...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence            45677777877777777764 5566777777777778888888887777776643 233344444444443333322222


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       442 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      .-.......+.+++...+......+.+.|+.++|.+.++++.+
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            1111100111111223333445566677888888888877765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.68  E-value=5.8e-05  Score=55.34  Aligned_cols=100  Identities=10%  Similarity=-0.042  Sum_probs=78.4

Q ss_pred             HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010342          396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS----------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDG  465 (512)
Q Consensus       396 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  465 (512)
                      |.+.+.+++|...++..++.. |.+..++..+..++...          +.+++|+..|++.++.+ +.+..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            445667999999999999876 77888888888888743          45688999999999875 3367889889988


Q ss_pred             HHhcCC-----------HHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 010342          466 ACKLSM-----------KREAYQILREMRKNGLNPDAVTWRILDK  499 (512)
Q Consensus       466 ~~~~g~-----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~  499 (512)
                      |...|+           +++|.+.|++..+  +.|+..++..-+.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~  127 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE  127 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHH
Confidence            877653           6889999999988  6788776665443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.62  E-value=7.5e-05  Score=60.90  Aligned_cols=123  Identities=10%  Similarity=-0.027  Sum_probs=65.1

Q ss_pred             HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  404 (512)
                      ..+.|++++|+..+.+.++..  +.+...+..+...++..|++++|...++...+.. +-+...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence            345566777777766655444  4455666666677777777777777777666642 2223333333333333222222


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +..-.......+.+++...+...+..+...|+.++|.+.+.++.+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            2221111111111222333444455667778888888888777664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.41  E-value=0.001  Score=49.25  Aligned_cols=102  Identities=13%  Similarity=-0.011  Sum_probs=73.2

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCC-CC----------hHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCC----
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHV-PN----------VVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-----GVLPN----   63 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~~~----   63 (512)
                      +.+.|++++|+..|++.++.... |+          ..+|+.+..+|.+.|++++|+..+++..+.     ...++    
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~   98 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL   98 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence            45679999999999998864211 11          356888999999999999999988887642     11121    


Q ss_pred             -hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010342           64 -SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA  105 (512)
Q Consensus        64 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  105 (512)
                       ...|+.+..++...|++++|...+.+.++..++..+..+...
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~  141 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE  141 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHH
Confidence             124566778888899999999988888887776655544433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.40  E-value=0.0013  Score=48.67  Aligned_cols=101  Identities=17%  Similarity=0.107  Sum_probs=59.5

Q ss_pred             hHhHHHH--HHHHHhcCChhHHHHHHHHHHhCC-CCCC----------hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhh
Q 010342           29 VVSYTTL--IHGYCRTGEMDVAYKVFDEMRHCG-VLPN----------SLTYSVLVRGVLRTRDVERANVLMFKLWERMK   95 (512)
Q Consensus        29 ~~~~~~l--~~~~~~~~~~~~a~~~~~~m~~~~-~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   95 (512)
                      ..+|..+  ...+.+.|++++|+..|++..+.. -.|+          ..+|+.+..++...|+++.|...+.+.++..+
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3456666  455667889999999999887631 0122          24577777888888888888887777776555


Q ss_pred             hcCCCCcch-----HhHHHHHHHHHccCChhHHHHHHHh
Q 010342           96 EEEDLSVNN-----AAFANLVDSLCREGYVNEVFRIAED  129 (512)
Q Consensus        96 ~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~  129 (512)
                      ......++.     ..+..+..+|...|++++|+..|++
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~  125 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  125 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            443333221     1233344444444444444444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.0016  Score=43.21  Aligned_cols=70  Identities=10%  Similarity=0.119  Sum_probs=38.9

Q ss_pred             hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc-hHhHHHHHHHHHccCChhHHHHHHHhcCCC
Q 010342           64 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCREGYVNEVFRIAEDMPQG  133 (512)
Q Consensus        64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  133 (512)
                      ...+..+...+.+.|+++.|...+++.++..+......++ ..++..|..++.+.|++++|+..+++..+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3334456666667777777777766666665544333332 234455555555555555555555554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.006  Score=40.23  Aligned_cols=26  Identities=12%  Similarity=0.284  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          424 YAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       424 ~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      +..+..++.+.|++++|++.++++++
T Consensus        49 l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          49 LDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            33344444444444444444444443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.69  E-value=0.041  Score=37.08  Aligned_cols=140  Identities=15%  Similarity=0.142  Sum_probs=93.9

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHH
Q 010342          290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE  369 (512)
Q Consensus       290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  369 (512)
                      .-.|..++..+++.+...    +.+..-|+.++.-....-+-+-..+.++..-+-..+.|              +++...
T Consensus        13 ildG~ve~Gveii~k~~~----ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~   74 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS   74 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred             HHhhhHHhHHHHHHHHcc----cCCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence            445888888888888876    44566677777777777777777777766433222222              233333


Q ss_pred             HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD  449 (512)
Q Consensus       370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  449 (512)
                      ...-+-.+     ..+......-++.+..+|.-+.-.++++.+.+.+ ++++...-.+..+|.+.|+..++.+++.+.-+
T Consensus        75 vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          75 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            33332222     2244555666777788888888888888877654 77788888888888888888888888888888


Q ss_pred             CCCC
Q 010342          450 SGVT  453 (512)
Q Consensus       450 ~~~~  453 (512)
                      .|++
T Consensus       149 ~G~K  152 (161)
T d1wy6a1         149 KGEK  152 (161)
T ss_dssp             TTCH
T ss_pred             HhHH
Confidence            7754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.67  E-value=0.035  Score=39.14  Aligned_cols=110  Identities=4%  Similarity=-0.042  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHH
Q 010342          366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAV  441 (512)
Q Consensus       366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~  441 (512)
                      |+++|..+|++..+.|.   ...+..|.  .....+.++|...+++..+.+   +......|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            45566666666665542   12222222  223446667777777766554   33344445555543    34677777


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 010342          442 HFLYELVDSGVTPNIVCYNVVIDGACK----LSMKREAYQILREMRKNG  486 (512)
Q Consensus       442 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~  486 (512)
                      +.|++..+.|   ++.....|...|..    ..+.++|.+++++..+.|
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            7777777765   34445555555554    346777888888777766

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.25  Score=43.35  Aligned_cols=202  Identities=12%  Similarity=-0.016  Sum_probs=103.7

Q ss_pred             CChhhHHHHHHHHHhcCCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHH
Q 010342          258 KNPTELLNVLVFMLQTQCQPDVITLNTVIN----GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE  333 (512)
Q Consensus       258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  333 (512)
                      .+++.+...+......... +..-+..+-.    .....+..+.+...+.......   .+.......+......+++..
T Consensus       228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~w~~~~al~~~~~~~  303 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS---QSTSLIERRVRMALGTGDRRG  303 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHTCHHH
T ss_pred             cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc---cchHHHHHHHHHHHHcCChHH
Confidence            4566666666665543322 2222222221    2223355566666666655443   333334444445556667777


Q ss_pred             HHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010342          334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV  413 (512)
Q Consensus       334 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  413 (512)
                      +...+.. +... ......-.--+.+++...|+.+.|...|..+..   .++   |-..+.+ .+.|..-.       +.
T Consensus       304 ~~~~~~~-l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa-~~Lg~~~~-------~~  367 (450)
T d1qsaa1         304 LNTWLAR-LPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAA-QRIGEEYE-------LK  367 (450)
T ss_dssp             HHHHHHH-SCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHH-HHTTCCCC-------CC
T ss_pred             HHHHHHh-cCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHH-HHcCCCCC-------CC
Confidence            7766655 3211 111223334455666777777777777776653   122   2222211 11121000       00


Q ss_pred             cCCC--CCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010342          414 WPSN--IHDNY----VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM  482 (512)
Q Consensus       414 ~~~~--~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  482 (512)
                      ....  .+...    .-..-+..+...|....|...|..+...   .+......+.....+.|.++.|+....+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            0000  00000    0112345667889999999999888754   24556667788888899999998776655

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.98  E-value=0.14  Score=35.87  Aligned_cols=82  Identities=9%  Similarity=-0.005  Sum_probs=50.6

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cC
Q 010342          364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SG  435 (512)
Q Consensus       364 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g  435 (512)
                      ..+.++|..++++..+.|   ++.....|...|..    ..+.++|.++|++..+.+   +......|...|..    ..
T Consensus        36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence            345667777777766655   34444455555543    346777888888777655   33344455555554    35


Q ss_pred             CHHHHHHHHHHHHHCC
Q 010342          436 KIHEAVHFLYELVDSG  451 (512)
Q Consensus       436 ~~~~a~~~~~~~~~~~  451 (512)
                      +.++|.+.|++..+.|
T Consensus       110 d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         110 NEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            7778888888777766

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.91  E-value=0.13  Score=34.69  Aligned_cols=141  Identities=15%  Similarity=0.096  Sum_probs=94.9

Q ss_pred             HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010342          325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE  404 (512)
Q Consensus       325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  404 (512)
                      +.-.|..++..+++.+.....    +..-||.++--....-+-+-...+++..-+.   .|.          ..++++..
T Consensus        12 ~ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHH
Confidence            345677777777777755433    4445555554444455555555555555431   111          22344444


Q ss_pred             HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010342          405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK  484 (512)
Q Consensus       405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  484 (512)
                      ....+-.+     ..+...++.-++.+..+|+-+.-.++++.+.+.+ +|++...-.+..+|.+.|...++-+++.++.+
T Consensus        75 vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          75 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            44444333     2344466777888999999999999999988855 88999999999999999999999999999999


Q ss_pred             CCCC
Q 010342          485 NGLN  488 (512)
Q Consensus       485 ~~~~  488 (512)
                      .|++
T Consensus       149 ~G~K  152 (161)
T d1wy6a1         149 KGEK  152 (161)
T ss_dssp             TTCH
T ss_pred             HhHH
Confidence            9865

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.069  Score=36.34  Aligned_cols=75  Identities=13%  Similarity=0.069  Sum_probs=51.1

Q ss_pred             CCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH
Q 010342          418 IHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTPN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT  493 (512)
Q Consensus       418 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  493 (512)
                      .++..+--...+++++..   +.++++.+++++.+.+ +.+ ...+..|..+|.+.|++++|.+.++.+++  +.|+..-
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q  108 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ  108 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence            345555556667777654   4567888888887653 223 35667788888888888888888888887  5676543


Q ss_pred             HH
Q 010342          494 WR  495 (512)
Q Consensus       494 ~~  495 (512)
                      -.
T Consensus       109 A~  110 (124)
T d2pqrb1         109 VG  110 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.65  Score=40.52  Aligned_cols=397  Identities=13%  Similarity=0.057  Sum_probs=206.1

Q ss_pred             ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCh
Q 010342            4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR--TGEMDVAYKVFDEMRHCGVLPNS-LTYSVLVRGVLRTRDV   80 (512)
Q Consensus         4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~   80 (512)
                      .++.|+..++.++...+.+.   | ...|-..-..-..  .....+....+   .+..-.|-. ..-...+..+.+.+++
T Consensus        16 a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl---~~~p~~P~~~~lr~~~l~~L~~~~~w   88 (450)
T d1qsaa1          16 AWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFV---RANPTLPPARTLQSRFVNELARREDW   88 (450)
T ss_dssp             HHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHH---HHCCCChhHHHHHHHHHHHHHhccCH
Confidence            35678888888888877533   2 3333333222222  22333333333   332111211 1223334556666666


Q ss_pred             hhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHH-
Q 010342           81 ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS-  159 (512)
Q Consensus        81 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-  159 (512)
                      ....       ...+   ....+...-..+..+....|+.++|...+..+-..+. ..+..+..+...+...|...... 
T Consensus        89 ~~~~-------~~~~---~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~lt~~~~  157 (450)
T d1qsaa1          89 RGLL-------AFSP---EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAY  157 (450)
T ss_dssp             HHHH-------HHCC---SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHH-------Hhcc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCCCHHHH
Confidence            5432       2111   2223344444567777888888888887776555443 33345555666555555443221 


Q ss_pred             -HHHHHHHHcC-----------CCCCcc-hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh--ccCC
Q 010342          160 -RVVYVMRKRG-----------LTPSLV-SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC--GESD  224 (512)
Q Consensus       160 -~~~~~~~~~g-----------~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~  224 (512)
                       +-+..+...|           +.++.. .....+....   +...+.....   .  ..++......+..++.  ...+
T Consensus       158 ~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~---~--~~~~~~~~~~~~~~l~rla~~d  229 (450)
T d1qsaa1         158 LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---T--TGATDFTRQMAAVAFASVARQD  229 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHh---c--CCCChhhhHHHHHHHHHHhccC
Confidence             2222222221           111111 1111111111   1111111111   1  1222222222222222  2357


Q ss_pred             HHHHHHHHHHHHhCCCCCCccc---HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010342          225 LEKARKVLQFMLSKKDVDRTRI---CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV  301 (512)
Q Consensus       225 ~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  301 (512)
                      .+.+..++..............   ...+.......+..+.+...+......+.  +.......+......+++..+...
T Consensus       230 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~  307 (450)
T d1qsaa1         230 AENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTW  307 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHH
Confidence            8888888888765433322221   12222233345667778777777665543  444444556666778999999999


Q ss_pred             HHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 010342          302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG  381 (512)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  381 (512)
                      +..+....  .......--+..++...|+.+.|...|.....    .+   +|...+.+- +.|..-.       +....
T Consensus       308 ~~~l~~~~--~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~---~fYG~LAa~-~Lg~~~~-------~~~~~  370 (450)
T d1qsaa1         308 LARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR---GFYPMVAAQ-RIGEEYE-------LKIDK  370 (450)
T ss_dssp             HHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC---SHHHHHHHH-HTTCCCC-------CCCCC
T ss_pred             HHhcCccc--ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CC---ChHHHHHHH-HcCCCCC-------CCcCC
Confidence            99886533  33455556778889999999999999988532    22   344444332 2222100       00000


Q ss_pred             CCC--ChH----hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          382 VVA--DST----TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV  448 (512)
Q Consensus       382 ~~~--~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  448 (512)
                      ++.  ...    .-..-+..+...|....|...|..+...   .+......+.....+.|.++.|+....+..
T Consensus       371 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            000  000    0112345667889999999999988753   345566778888889999999998776653

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.45  E-value=0.23  Score=31.56  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010342          440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR  483 (512)
Q Consensus       440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  483 (512)
                      +.+-++.+....+-|++....+.+++|.|.+++..|.++++..+
T Consensus        25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33334444444444455555555555555555555555554443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.15  E-value=0.91  Score=30.67  Aligned_cols=65  Identities=14%  Similarity=0.068  Sum_probs=36.5

Q ss_pred             ChHhHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010342          385 DSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIHD-NYVYAAMIKGLCRSGKIHEAVHFLYELVDS  450 (512)
Q Consensus       385 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  450 (512)
                      +..+--....++.+..   +.++++.+++++.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+++.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            3333333444444433   4456666776666533 222 245555666677777777777777777664

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.51  E-value=1.1  Score=28.51  Aligned_cols=63  Identities=13%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 010342            9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR   72 (512)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~   72 (512)
                      +.-++.+-++.+...+..|++....+.+++|-|-+++.-|.++|+-.+.+- .++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence            556777788888888888888888888888888888888888888877542 234556666554