Citrus Sinensis ID: 010352

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
MDSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
ccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccccEEEEEccccccccccHHHHHHHHHHHcHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHEEccccccccccccccHHHHHHHHHHHHHHHHHEEcccEEcccccccccccccc
cccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccHHEEHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
MDSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIiplygssllyagpaslVWGWVVVSFFTWFVGLAMAEIcssfpttgsLYFWAAhlaspkwgpfasWCCAWLETIGLIAGmgtqayagsQTLQSIILLCtgtnkdggyfapKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFThfemspeatgisskpYAVILSFLVSQyslygydsaahlteetkgadktgpiaiLSSIGIISIFGWALILALCFSIQDFsylydksnetagafvpaQILYDafhgryhnsTGAIILLIVIWGSfffgglsvtTSAARVVYALSrdkgipfssiwrqlhpkhkvpsnAVWLCAAICIIlglpilkvNVVFTAITSICtigwvggyavPIFARMVMAEQkfnagpfylgkasrpiCLIAFLWICYTCsvfllptfypiswdtfnyapvALGVGLGLIMLWWLLDArkwftgpvrnidnengkv
mdsgekrlnelgykqELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKwftgpvrnidnengkv
MDSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPiailssigiisiFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
***************ELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVR*********
*DSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTG************
MDSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
*DSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGP***********
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MDSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query512 2.2.26 [Sep-21-2011]
B9EXZ6520 Amino-acid permease BAT1 no no 0.978 0.963 0.436 1e-109
Q9ZU50516 Amino-acid permease BAT1 yes no 0.980 0.972 0.421 1e-107
O60113542 Uncharacterized amino-aci yes no 0.955 0.902 0.282 2e-50
Q9C0Z0543 Uncharacterized amino-aci no no 0.931 0.878 0.298 3e-50
Q09887544 Uncharacterized amino-aci no no 0.943 0.887 0.277 2e-47
Q9US40567 Uncharacterized amino-aci no no 0.925 0.835 0.279 4e-47
Q10087550 Uncharacterized amino-aci no no 0.939 0.874 0.296 5e-47
O74537557 Uncharacterized amino-aci no no 0.941 0.865 0.255 3e-45
P32837571 GABA-specific permease OS yes no 0.890 0.798 0.289 2e-44
O59942541 Amino-acid permease 2 OS= N/A no 0.927 0.878 0.268 5e-42
>sp|B9EXZ6|BAT1_ORYSJ Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/504 (43%), Positives = 313/504 (62%), Gaps = 3/504 (0%)

Query: 3   SGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVV 62
           +G  RL ELGYKQEL+R++++   FA SFS +++ TGI  LY + L + GPA++ +GW V
Sbjct: 19  TGHARLRELGYKQELKRDLSVLSNFAFSFSIISVLTGITTLYNTGLSFGGPATMTFGWFV 78

Query: 63  VSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQ 122
              FT  VGL+MAEICSSFPT+G LY+W+A L+  +W PFASW   W   +G  A   + 
Sbjct: 79  AGAFTMTVGLSMAEICSSFPTSGGLYYWSARLSGKRWAPFASWITGWFNIVGQWAVTTSV 138

Query: 123 AYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIIS 182
            ++ +Q +Q IILL TG N  GGY A K++ +  +  + +  A +N+  +  ++F    +
Sbjct: 139 DFSLAQLIQVIILLSTGGNNGGGYMASKYVVIAFHAAILLSHAAINSLPITWLSFFGQFA 198

Query: 183 MWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLY 242
             W + G  V++I +P VA    SA +VFTHF     A GI S  Y  +L  L+SQY+L 
Sbjct: 199 AAWNMLGVFVLMIAVPTVATERASAKFVFTHFNTENNA-GIHSNFYIFVLGLLMSQYTLT 257

Query: 243 GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG 302
           GYD++AH+TEETK AD+ GPI I+S+IGI  I GW  IL + F+++D  YL +  N+ AG
Sbjct: 258 GYDASAHMTEETKNADRNGPIGIISAIGISIIVGWGYILGITFAVKDIPYLLNPEND-AG 316

Query: 303 AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS 362
            +  A++ Y AF  RY +  G II L ++  + +F G+S  TS +R+ YA SRD  +P S
Sbjct: 317 GYAIAEVFYLAFKSRYGSGIGGIICLGIVAVAIYFCGMSSVTSNSRMAYAFSRDGAMPLS 376

Query: 363 SIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFAR 422
           S+W +++ KH+VP NAVWL A I + + LP L   V F A+ SI TIG    YA+PI  R
Sbjct: 377 SVWHKVN-KHEVPINAVWLSALISLCMALPSLGSLVAFQAMVSIATIGLYVAYALPILFR 435

Query: 423 MVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVG 482
           + +A + F  GPF LG+    +   A LW+     +F LP  YP++ DT NY PVA+G  
Sbjct: 436 VTLARKHFVPGPFNLGRCGVAVGWAAVLWVATITVLFSLPVSYPVTKDTLNYTPVAVGGL 495

Query: 483 LGLIMLWWLLDARKWFTGPVRNID 506
             L++  WLL AR WF GP+ N+D
Sbjct: 496 FLLVLSSWLLSARHWFKGPITNLD 519
May be involved in the transport of amino acids.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9ZU50|BAT1_ARATH Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2 Back     alignment and function description
>sp|O60113|YG64_SCHPO Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=3 SV=1 Back     alignment and function description
>sp|Q9C0Z0|YKM2_SCHPO Uncharacterized amino-acid permease PB24D3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.02c PE=3 SV=1 Back     alignment and function description
>sp|Q09887|YC9D_SCHPO Uncharacterized amino-acid permease C584.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC584.13 PE=3 SV=1 Back     alignment and function description
>sp|Q9US40|YFZ1_SCHPO Uncharacterized amino-acid permease C1039.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.01 PE=3 SV=1 Back     alignment and function description
>sp|Q10087|YAO8_SCHPO Uncharacterized amino-acid permease C11D3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.08c PE=3 SV=1 Back     alignment and function description
>sp|O74537|YCQ4_SCHPO Uncharacterized amino-acid permease C74.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC74.04 PE=3 SV=1 Back     alignment and function description
>sp|P32837|UGA4_YEAST GABA-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA4 PE=1 SV=1 Back     alignment and function description
>sp|O59942|AAP2_NEUCR Amino-acid permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=aap-2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
224093575538 amino acid transporter [Populus trichoca 1.0 0.951 0.866 0.0
356507445527 PREDICTED: LOW QUALITY PROTEIN: uncharac 1.0 0.971 0.861 0.0
357464761528 Amino-acid permease, putative [Medicago 1.0 0.969 0.878 0.0
356518789542 PREDICTED: LOW QUALITY PROTEIN: uncharac 1.0 0.944 0.851 0.0
225438400512 PREDICTED: uncharacterized amino-acid pe 1.0 1.0 0.896 0.0
296082588522 unnamed protein product [Vitis vinifera] 1.0 0.980 0.896 0.0
147773952512 hypothetical protein VITISV_000645 [Viti 1.0 1.0 0.896 0.0
242073140525 hypothetical protein SORBIDRAFT_06g01710 0.994 0.969 0.856 0.0
413918355525 amino acid permease [Zea mays] 1.0 0.975 0.842 0.0
226498468525 amino acid permease [Zea mays] gi|195616 0.998 0.973 0.841 0.0
>gi|224093575|ref|XP_002309938.1| amino acid transporter [Populus trichocarpa] gi|222852841|gb|EEE90388.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  940 bits (2429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/525 (86%), Positives = 488/525 (92%), Gaps = 13/525 (2%)

Query: 1   MDSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGW 60
           MD GEKRLNELGYKQELRREMTLFKT AISFSTMTLFTGI PLYGSSLLYAGPASLVWGW
Sbjct: 14  MDPGEKRLNELGYKQELRREMTLFKTLAISFSTMTLFTGITPLYGSSLLYAGPASLVWGW 73

Query: 61  VVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMG 120
           VVVSFFTWFVG+AMAEICSSFPTTGSLYFWAAHLA P+WGPFASWCCAWLETIGL+AG+G
Sbjct: 74  VVVSFFTWFVGIAMAEICSSFPTTGSLYFWAAHLAGPRWGPFASWCCAWLETIGLVAGIG 133

Query: 121 TQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDI 180
           TQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLT+IWAVLNTFALEVIAFID+
Sbjct: 134 TQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTLIWAVLNTFALEVIAFIDV 193

Query: 181 ISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYS 240
           IS+WWQV GGLVI+IMLPLV+LTTQSASYVFTHFE +P++TGISSKPY V+LSFLVSQYS
Sbjct: 194 ISIWWQVIGGLVIVIMLPLVSLTTQSASYVFTHFETAPDSTGISSKPYVVVLSFLVSQYS 253

Query: 241 LYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ------------ 288
           LYGYD+AAHLTEETKGADK GPIAILSSIGII++FGWA ILAL FSIQ            
Sbjct: 254 LYGYDAAAHLTEETKGADKNGPIAILSSIGIITVFGWAYILALTFSIQVCLASRTTALLI 313

Query: 289 -DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAA 347
            DF YLYD SNETAGAFVPAQILYDAF GRYHNS GAI+LL +IWGSFFFGGLS+TTSAA
Sbjct: 314 PDFGYLYDPSNETAGAFVPAQILYDAFQGRYHNSAGAIVLLFIIWGSFFFGGLSITTSAA 373

Query: 348 RVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSIC 407
           RVVYALSRD+GIPFSSIWR++HPKHKVPSNAVWLCAAICI+LGLPILKVNVVFTAITSIC
Sbjct: 374 RVVYALSRDEGIPFSSIWRKIHPKHKVPSNAVWLCAAICILLGLPILKVNVVFTAITSIC 433

Query: 408 TIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPI 467
           TIGWVGGYAVPIFAR+VM E+ F AGPFYLG+A RP+C+IAFLWICYTCSVFLLPT+YP+
Sbjct: 434 TIGWVGGYAVPIFARIVMDEKNFKAGPFYLGRARRPVCIIAFLWICYTCSVFLLPTYYPL 493

Query: 468 SWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV 512
           SW+TFNYAPVA+GVGL  IMLWW+LDARKWF GPVRNID  NGKV
Sbjct: 494 SWNTFNYAPVAIGVGLSSIMLWWMLDARKWFKGPVRNIDISNGKV 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356507445|ref|XP_003522477.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized amino-acid permease C15C4.04c-like [Glycine max] Back     alignment and taxonomy information
>gi|357464761|ref|XP_003602662.1| Amino-acid permease, putative [Medicago truncatula] gi|358348396|ref|XP_003638233.1| Amino-acid permease, putative [Medicago truncatula] gi|355491710|gb|AES72913.1| Amino-acid permease, putative [Medicago truncatula] gi|355504168|gb|AES85371.1| Amino-acid permease, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|356518789|ref|XP_003528060.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized amino-acid permease C15C4.04c-like [Glycine max] Back     alignment and taxonomy information
>gi|225438400|ref|XP_002274762.1| PREDICTED: uncharacterized amino-acid permease C15C4.04c-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082588|emb|CBI21593.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147773952|emb|CAN60789.1| hypothetical protein VITISV_000645 [Vitis vinifera] Back     alignment and taxonomy information
>gi|242073140|ref|XP_002446506.1| hypothetical protein SORBIDRAFT_06g017100 [Sorghum bicolor] gi|241937689|gb|EES10834.1| hypothetical protein SORBIDRAFT_06g017100 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|413918355|gb|AFW58287.1| amino acid permease [Zea mays] Back     alignment and taxonomy information
>gi|226498468|ref|NP_001148156.1| amino acid permease [Zea mays] gi|195616234|gb|ACG29947.1| amino acid permease [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZU50BAT1_ARATHNo assigned EC number0.42170.98040.9728yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00070456
amino acid transporter (538 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 1e-114
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 2e-45
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 9e-35
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 2e-31
pfam00324473 pfam00324, AA_permease, Amino acid permease 1e-16
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 1e-12
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 1e-06
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 8e-04
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information 
 Score =  345 bits (888), Expect = e-114
 Identities = 166/496 (33%), Positives = 259/496 (52%), Gaps = 16/496 (3%)

Query: 8   LNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFT 67
           L  LGYK EL+RE +L+  F  +FS    +TGI   Y   L   G  S+VWGW++    +
Sbjct: 1   LVALGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGS 60

Query: 68  WFVGLAMAEICSSFPTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGS 127
             + L++AE+ S++PT+G  YFW+A LA P+  PFASW   W    G +AG  +   + +
Sbjct: 61  ICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVA 120

Query: 128 QTLQSIILLCTGTNKDGGYFAPK-WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQ 186
           Q +  I+ L T     G  + P  W    + IG+ +I A++N+   + +  I   + +W 
Sbjct: 121 QLILGIVSLTT----PGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWS 176

Query: 187 VAGGLVI-IIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYD 245
           + G L I I +L   +       +VFT+F       G     +A +L  L   +S+ GYD
Sbjct: 177 LLGFLTICITLLACKSPKFNDGKFVFTNFN--NSTGGWKPGGFAFLLGLLNPAWSMTGYD 234

Query: 246 SAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 305
             AH+ EE +  +  GP AI+ ++ I  + G+   + L FS+ D   L    + T G  +
Sbjct: 235 GTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLI---SSTTGQPI 291

Query: 306 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIW 365
            AQI Y+A      N  GAI LL +I  + FF  ++  T+ +R++YA SRD G+PFS +W
Sbjct: 292 -AQIFYNALG----NKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLW 346

Query: 366 RQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVM 425
            +++P+ +VP NAVWL A   I++GL  L  +  F AI S+CT+     Y +PI  ++  
Sbjct: 347 SRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAK 406

Query: 426 AEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGL 485
                  GPF+LGK    +  +A  W  ++  +F  P   P++ +  NYA V     L +
Sbjct: 407 GRNTIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAI 466

Query: 486 IMLWWLLDARKWFTGP 501
            +++W    RK FTGP
Sbjct: 467 SLVYWKYKGRKEFTGP 482

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 512
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PRK11021410 putative transporter; Provisional 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.96
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.95
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.92
PHA02764399 hypothetical protein; Provisional 99.86
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.86
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.84
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.84
PRK10483414 tryptophan permease; Provisional 99.82
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.81
PRK09664415 tryptophan permease TnaB; Provisional 99.79
PRK15132403 tyrosine transporter TyrP; Provisional 99.77
TIGR00814397 stp serine transporter. The HAAAP family includes 99.75
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.66
PRK13629443 threonine/serine transporter TdcC; Provisional 99.64
PF03845320 Spore_permease: Spore germination protein; InterPr 99.41
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.34
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.16
PRK11375484 allantoin permease; Provisional 99.06
PTZ00206467 amino acid transporter; Provisional 98.95
PLN03074473 auxin influx permease; Provisional 98.93
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 98.79
KOG1304449 consensus Amino acid transporters [Amino acid tran 98.76
COG1457442 CodB Purine-cytosine permease and related proteins 98.7
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.66
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.63
COG3949349 Uncharacterized membrane protein [Function unknown 98.61
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.61
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.49
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.41
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.32
PRK11017404 codB cytosine permease; Provisional 98.29
TIGR00813407 sss transporter, SSS family. have different number 98.26
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.25
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.21
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.17
PRK12488549 acetate permease; Provisional 98.14
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.14
PRK00701439 manganese transport protein MntH; Reviewed 98.08
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.01
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.94
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.88
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.84
KOG1305411 consensus Amino acid transporter protein [Amino ac 97.81
PRK15419502 proline:sodium symporter PutP; Provisional 97.76
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 97.68
PRK10484523 putative transporter; Provisional 97.67
PRK09395551 actP acetate permease; Provisional 97.67
PRK15433439 branched-chain amino acid transport system 2 carri 97.65
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.64
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.56
PRK09950506 putative transporter; Provisional 97.45
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.44
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 97.04
PRK09928679 choline transport protein BetT; Provisional 97.02
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 96.98
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 96.91
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 96.5
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 96.22
COG4147529 DhlC Predicted symporter [General function predict 96.18
TIGR00842453 bcct choline/carnitine/betaine transport. properti 96.13
COG1292537 BetT Choline-glycine betaine transporter [Cell env 95.81
PRK10745 622 trkD potassium transport protein Kup; Provisional 95.25
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 95.25
KOG2466572 consensus Uridine permease/thiamine transporter/al 95.14
PLN00148 785 potassium transporter; Provisional 94.2
PLN00151 852 potassium transporter; Provisional 94.08
KOG4303524 consensus Vesicular inhibitory amino acid transpor 93.76
PF1390651 AA_permease_C: C-terminus of AA_permease 93.73
PLN00150 779 potassium ion transporter family protein; Provisio 93.61
PLN00149 779 potassium transporter; Provisional 93.44
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 89.1
KOG3659629 consensus Sodium-neurotransmitter symporter [Signa 86.66
PRK15238496 inner membrane transporter YjeM; Provisional 83.17
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1e-61  Score=476.22  Aligned_cols=490  Identities=39%  Similarity=0.731  Sum_probs=452.6

Q ss_pred             ChhhhHHHhcCCCcccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010352            2 DSGEKRLNELGYKQELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSF   81 (512)
Q Consensus         2 ~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~   81 (512)
                      |+|++.+.++++|+++||++++++.++++.+.+..+.|+.......+..+|+.+..|+|++++.+.+|.+++.+|+++.+
T Consensus        31 ~~d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~  110 (550)
T KOG1289|consen   31 DSDEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAM  110 (550)
T ss_pred             cCCHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhC
Confidence            56778888999999999999999999999999988889888888888888888799999999999999999999999999


Q ss_pred             CCCChhhHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHH
Q 010352           82 PTTGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLT  161 (512)
Q Consensus        82 p~~GG~y~~~~~~~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  161 (512)
                      |.+||.|.|+....+|++||+.+|++||...+++....++..+..++.+........     +++.++.+++..+..++.
T Consensus       111 PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~n-----p~y~~~~~~~~~v~~ai~  185 (550)
T KOG1289|consen  111 PTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTN-----PNYEPTNYHQFGVFEAIL  185 (550)
T ss_pred             CCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcC-----CCCcccceEeehHHHHHH
Confidence            999999999999999999999999999999999999999999999999999887754     778888999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc---ccccccccccccccCCCCCCCchhHHHHhhhhhh
Q 010352          162 IIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT---QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQ  238 (512)
Q Consensus       162 ~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (512)
                      .+..++|....|...+++.+.+...++.+++..+.......+.   +..++.|.++ .  |.++|++.++++..++....
T Consensus       186 ~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f-~--N~sgw~~~G~afil~f~~~~  262 (550)
T KOG1289|consen  186 FVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKF-N--NYSGWKNNGWAFILGFFNPA  262 (550)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecc-c--ccCCCCcchHHHHHhhccce
Confidence            9999999999999999999999999999999888887776543   4466778888 6  89999988999999999999


Q ss_pred             hhhccccccchhhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhhhcCCCcccCCCcHHHHHHHHhhcc
Q 010352          239 YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ-DFSYLYDKSNETAGAFVPAQILYDAFHGR  317 (512)
Q Consensus       239 ~~f~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (512)
                      |++.|+|++++++||+|||+|+.||||+.++.+..+.-....+.+....+ +.+.+.+++.    ++|..+.+.+..++.
T Consensus       263 wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~----g~p~~~i~~~~lg~k  338 (550)
T KOG1289|consen  263 WTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSL----GQPIVQIYYQALGKK  338 (550)
T ss_pred             eEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCC----CChHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999997 7778888776    788888888887554


Q ss_pred             cCCcchhHHHHHHHHHHHHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhccccccH
Q 010352          318 YHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVN  397 (512)
Q Consensus       318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~  397 (512)
                           ...++....++..+....+...+.||..|+.+|||.+|++++++|+||++++|.+|+++..+++.++.++.+.+.
T Consensus       339 -----~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~  413 (550)
T KOG1289|consen  339 -----GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASA  413 (550)
T ss_pred             -----ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhH
Confidence                 446777778888899999999999999999999999999999999998889999999999999999999888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhH
Q 010352          398 VVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPV  477 (512)
Q Consensus       398 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (512)
                      .+++.+.+.+....+++|.++.++++..+|+..++.||+++|+..+..++++.|.+++++..++|..+|++.+++||+.+
T Consensus       414 ~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~V  493 (550)
T KOG1289|consen  414 TAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACV  493 (550)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhheeecccccCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEE
Confidence            99999999999999999999999999998877788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhheeecceeeecCccccCCC
Q 010352          478 ALGVGLGLIMLWWLLDARKWFTGPVRNIDNE  508 (512)
Q Consensus       478 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  508 (512)
                      +.+...+++++||+..+||..++|..+.+++
T Consensus       494 V~gg~~lf~li~~~~~~~k~f~gP~~~~~~~  524 (550)
T KOG1289|consen  494 VYGGVMLFCLIYYFVSARKWFKGPIPSVLEE  524 (550)
T ss_pred             eehhhhhhhhheeeeecceeecCCccccccc
Confidence            9999999999999999999999887776555

>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 2e-22
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 4e-18
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 2e-13
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
 Score = 99.5 bits (248), Expect = 2e-22
 Identities = 65/477 (13%), Positives = 158/477 (33%), Gaps = 36/477 (7%)

Query: 18  RREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEI 77
            +++TL   FAI+ S +                +G + + +  +    +   VGL  AE+
Sbjct: 10  AKQLTLLGFFAITASMVMAVYEYPTFA-----TSGFSLVFFLLLGGILWFIPVGLCAAEM 64

Query: 78  CSSFPT-TGSLYFWAAHLASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILL 136
            +      G ++ W ++   P+WG    +       + +  G     Y     L  I+  
Sbjct: 65  ATVDGWEEGGVFAWVSNTLGPRWG----FAAISFGYLQIAIGFIPMLYFVLGALSYIL-- 118

Query: 137 CTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIM 196
                K               + +    A+      +  A I  +  +  +     I+I 
Sbjct: 119 -----KWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIA 173

Query: 197 LPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKG 256
           L  + L + +        EM  +           ++ F+    S  G +++A    E   
Sbjct: 174 LAAIYLHSGAPV----AIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229

Query: 257 ADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHG 316
             +  P+A+L  +           L++   I       ++ N +AG      +L      
Sbjct: 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIP-----GNEINLSAGVMQTFTVLMSHVAP 284

Query: 317 RYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPS 376
               +   I  L+++         S     +R +Y  ++   +P  + + +++ K+ VP 
Sbjct: 285 EIEWTVRVISALLLL--GVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMN-KNGVPV 339

Query: 377 NAVWLCAAICIILGLPIL----KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNA 432
             V     I  I  + +       N+ F    ++  + ++  Y +     +V+  +  + 
Sbjct: 340 TLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDL 399

Query: 433 G-PFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIML 488
              F +        ++A + +  +   F++    P +    +       + +  +++
Sbjct: 400 KRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVV 456
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.07
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 98.41
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.36
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.02
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 92.08
4ain_A539 Glycine betaine transporter BETP; membrane protein 91.33
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=1.4e-50  Score=417.48  Aligned_cols=434  Identities=17%  Similarity=0.169  Sum_probs=341.1

Q ss_pred             cccccccchHHHHHHHHHHhhhhhhHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q 010352           15 QELRREMTLFKTFAISFSTMTLFTGIIPLYGSSLLYAGPASLVWGWVVVSFFTWFVGLAMAEICSSFPTTGSLYFWAAHL   94 (512)
Q Consensus        15 ~~l~r~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~~~~a~~~~el~~~~p~~GG~y~~~~~~   94 (512)
                      +++||++++++++.+.++.++| +|++..++. ...+|+. ++++|+++++++++.+++|+|+++++|++||.|.|++|.
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG-~Gif~~~~~-~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~   80 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMG-SGVFLLPAN-LASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRC   80 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCS-SHHHHHHHH-HHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHhHHh-hhHHhhHHH-HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence            3567999999999999999999 999988765 5567887 899999999999999999999999999999999999999


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCchHHHHHHHHHHHHHHHHHHhchhhH
Q 010352           95 ASPKWGPFASWCCAWLETIGLIAGMGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV  174 (512)
Q Consensus        95 ~g~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~k~  174 (512)
                          +||..|++.+|.+++.+....+..+...++++...++.          ..+++...+++++++++++.+|++|+|.
T Consensus        81 ----~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~in~~g~~~  146 (445)
T 3l1l_A           81 ----FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----------LKDPWVLTITCVVVLWIFVLLNIVGPKM  146 (445)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG----------GGSHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc----------ccccHHHHHHHHHHHHHHHHHHHhchHH
Confidence                78888999999999999888888888888887754321          1234667788888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCCchhHHHHhhhhhhhhhccccccchhhhhc
Q 010352          175 IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEET  254 (512)
Q Consensus       175 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~  254 (512)
                      .++++.+++.++++.++++++.++......   ++ .+++    ++.++++ ..++..++...+|+|.|+|..++++||+
T Consensus       147 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---~~-~~~~----~~~~~~~-~~~~~~~~~~~~~af~G~e~~~~~~~e~  217 (445)
T 3l1l_A          147 ITRVQAVATVLALIPIVGIAVFGWFWFRGE---TY-MAAW----NVSGLGT-FGAIQSTLNVTLWSFIGVESASVAAGVV  217 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCCCC---CC-CCC----------------HHHHHHHHHHTTTTTTHHHHGGGGB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChh---hc-cccc----CccCCcc-HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence            999999999999998888887776553211   11 1222    2222221 3458899999999999999999999999


Q ss_pred             cCcccccchHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCCcccCCCcHHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 010352          255 KGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGS  334 (512)
Q Consensus       255 k~P~k~ip~ai~~~~~~~~i~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  334 (512)
                      |||+|++||++..+..++.++|++..++..... +++++.++      ..|..+.+....    | ++...++.+..+++
T Consensus       218 k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~------~~p~~~~~~~~~----g-~~~~~~~~~~~~~~  285 (445)
T 3l1l_A          218 KNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMI-PNAALRVS------ASPFGDAARMAL----G-DTAGAIVSFCAAAG  285 (445)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTTSCST------TCTHHHHHHHHH----C-TTHHHHHHHHHHHH
T ss_pred             cCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcc------CcHHHHHHHHHh----h-HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888 66666443      235545544443    3 34778888999999


Q ss_pred             HHHhHHHHHhhhhhhHHhhhcCCCCCcccccccccccCCchHHHHHHHHHHHHHHhcccccc--HHHHHHHHHHHHHHHH
Q 010352          335 FFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKV--NVVFTAITSICTIGWV  412 (512)
Q Consensus       335 ~~~~~~~~~~~~sR~l~~ma~d~~lP~~~~f~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~--~~~~~~l~~~~~~~~~  412 (512)
                      .+++.++.+.+.+|++++|+|||.+|  ++|+|+| |+++|+++++++.+++.++.+....+  .+.++.+.++.+....
T Consensus       286 ~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  362 (445)
T 3l1l_A          286 CLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTL  362 (445)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHTTSSC--GGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCc--HHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999  9999999 78999999999999888766544443  2468899999999999


Q ss_pred             HHHHHHHHHHHhhcccCccCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccchhHHHHHHHHHHhhhhee
Q 010352          413 GGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL  492 (512)
Q Consensus       413 ~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  492 (512)
                      +.|.+.+++.+++|+|+.  + .|.| ..+.++.++.+.+.+.++....+            ......++++.+..+|..
T Consensus       363 ~~y~~~~~~~~~~r~~~~--~-~r~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~g~~~y~~  426 (445)
T 3l1l_A          363 VPYLYTCAALLLLGHGHF--G-KARP-AYLAVTTIAFLYCIWAVVGSGAK------------EVMWSFVTLMVITAMYAL  426 (445)
T ss_dssp             HHHHHHHHHHHHHHSSSS--G-GGCT-TTHHHHHHHHHHHHHHHHHSCHH------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCc--c-cccc-hhHHHHHHHHHHHHHHHHHcCHH------------HHHHHHHHHHHHHHHHHH
Confidence            999999999998876543  2 1445 77888888888877765543111            223444555566666655


Q ss_pred             ecceeeecCcccc
Q 010352          493 DARKWFTGPVRNI  505 (512)
Q Consensus       493 ~~~~~~~~~~~~~  505 (512)
                      ++||++++++.+.
T Consensus       427 ~~~~~~~~~~~~~  439 (445)
T 3l1l_A          427 NYNRLHKNPYPLD  439 (445)
T ss_dssp             HHSTTCCCSSCCC
T ss_pred             HhhhcccCccccc
Confidence            5555544444443
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 98.01
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.01  E-value=0.001  Score=66.07  Aligned_cols=43  Identities=12%  Similarity=0.121  Sum_probs=28.2

Q ss_pred             hHHHHhhhhhhhhh-ccccccchhhhhccCcccccchHHHHHHHH
Q 010352          228 YAVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGI  271 (512)
Q Consensus       228 ~~~~~~~~~~~~~f-~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~  271 (512)
                      .-...+...+++++ .|+-....++.-.|+ +.|+.|-.....+.
T Consensus       238 ~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~~v~~~  281 (509)
T d2a65a1         238 GVWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATL  281 (509)
T ss_dssp             HHHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccceEEEec
Confidence            34567888888887 677777777777766 55566644443333