Citrus Sinensis ID: 010381
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJB5 | 901 | Disease resistance RPP8-l | yes | no | 0.890 | 0.506 | 0.261 | 6e-30 | |
| Q9XIF0 | 906 | Putative disease resistan | no | no | 0.849 | 0.480 | 0.283 | 5e-28 | |
| Q8W474 | 907 | Probable disease resistan | no | no | 0.800 | 0.452 | 0.279 | 2e-27 | |
| Q8W4J9 | 908 | Disease resistance protei | no | no | 0.921 | 0.519 | 0.249 | 5e-27 | |
| Q9FJK8 | 908 | Probable disease resistan | no | no | 0.912 | 0.514 | 0.254 | 2e-26 | |
| P0C8S1 | 906 | Probable disease resistan | no | no | 0.841 | 0.475 | 0.261 | 9e-26 | |
| P59584 | 910 | Disease resistance protei | no | no | 0.812 | 0.457 | 0.231 | 2e-25 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.806 | 0.453 | 0.263 | 8e-25 | |
| P0DI18 | 1049 | Probable disease resistan | no | no | 0.785 | 0.383 | 0.258 | 3e-23 | |
| P0DI17 | 1049 | Probable disease resistan | no | no | 0.785 | 0.383 | 0.258 | 3e-23 |
| >sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 142/544 (26%), Positives = 238/544 (43%), Gaps = 88/544 (16%)
Query: 11 SVLIGGPLIRLKHEA--WQFFILHYGSMPLENYLQGETIPTILSRICSVL--ELPFHLKI 66
+V + G L+ KH A W+ + G+ + + + RI S+ +LP LK
Sbjct: 360 AVKVLGGLLANKHTASEWKRVSENIGAQIVGKSCLDDNSLNSVYRILSLSYEDLPTDLKH 419
Query: 67 CCIYLCVFPPSIEISTRQLYQLWEAEG-FIPYNSEETAEHHLKELIRRGFIQVSKRRAGG 125
C +YL FP +I TR LY W AEG + ++ E +L+EL+RR + K
Sbjct: 420 CFLYLAHFPEDYKIKTRTLYSYWAAEGIYDGLTILDSGEDYLEELVRRNLVIAEKSNLSW 479
Query: 126 TIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMANVKRCFILKDLIDFFPSEYSDMYL 185
+K C ++ E S VE + +K P+ S +
Sbjct: 480 RLKLCQMHDMM----------REVCISKAKVENFLQIIK-----------VPTSTSTIIA 518
Query: 186 QSFLNHSSESDRLARIDCENFC-----KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLK 240
QS S S RL + F KK + L VL L + Q ++L LL+ L
Sbjct: 519 QS----PSRSRRLTVHSGKAFHILGHKKKVRSLLVLGLKEDLWIQSASRFQSLPLLRVLD 574
Query: 241 LNIPSLKC--LPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG-SITLPAPPT 297
L+ + LPS + L++L+ L + + + P I ++ +++LN +I +P
Sbjct: 575 LSSVKFEGGKLPSSIGGLIHLRFLSLHQAVVSHLPSTIRNLKLMLYLNLHVAIGVPVHVP 634
Query: 298 NYSSSLKNLIFVSA-LHPISCTPDILGRLPNIQ-------------------TLRISGDL 337
N + L ++S L T LG L N++ LR G +
Sbjct: 635 NVLKEMLELRYLSLPLDMHDKTKLELGDLVNLEYLWCFSTQHSSVTDLLRMTKLRFFG-V 693
Query: 338 SYYQ----SRVSKSLCKLQKLEWLKLVNESKP------SRMVLS---------------- 371
S+ + +S SL + +KLE L + K VL
Sbjct: 694 SFSERCTFENLSSSLRQFRKLETLSFIYSRKTYMVDYVGEFVLDFIHLKKLSLGVHLSKI 753
Query: 372 --EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL 429
++Q PP + H+ L ++EDPMP LEKL +++ ++L++ +++GR++ C GGFP+L
Sbjct: 754 PDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC-SKGGFPQL 812
Query: 430 KVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTEL 489
+ L + L+EW + G+MP L LI+ C L +LP+ L + SL++L + + E
Sbjct: 813 RALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKREW 872
Query: 490 RQRL 493
+++L
Sbjct: 873 KEKL 876
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 138/486 (28%), Positives = 230/486 (47%), Gaps = 51/486 (10%)
Query: 60 LPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFI-PYNSE-----ETAEHHLKELIRR 113
LP +LK C +YL +P EI +L +W AEG P N E + A+ +++EL++R
Sbjct: 412 LPGYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITYPGNYEGATIRDVADLYIEELVKR 471
Query: 114 GFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMA----------NV 163
+ + + C ++ L A++ F+ +V +P +
Sbjct: 472 NMVISERDALTSRFEKCQLHDLMREICLLKAKEENFL---QIVTDPTSSSSVHSLASSRS 528
Query: 164 KRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVL 223
+R + I ++ + L+S L R + NF + LRVLDL A
Sbjct: 529 RRLVVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSM--GSNFIE-LPLLRVLDLDGAKF 585
Query: 224 --DQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ--TLQMPSSYIDQSPEDIWMM 279
+ P + L LKYL L S+ LPS L L +L L++ S + P +
Sbjct: 586 KGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPN---VF 642
Query: 280 QKLMHLNFGSITLPAPPTNYSS-SLKNLIFVSALHPISC---TPDILGRLPNIQTLRI-- 333
++++ L + ++LP ++ + L NL+ + L S + L R+ ++TL+I
Sbjct: 643 KEMLELRY--LSLPWERSSLTKLELGNLLKLETLINFSTKDSSVTDLHRMTKLRTLQILI 700
Query: 334 SGDLSYYQSRVSKSLCKLQKLEWLKL------VNESKPS---RMVLSEYQ-FPPSLTHLS 383
SG+ + +S +L L LE L + V P R +L + Q FP LT +S
Sbjct: 701 SGE-GLHMETLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTIS 759
Query: 384 LSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW 443
L L+EDPMPTLEKL ++V+ L N+Y+GR++ C G GGFP L L + + L+EW
Sbjct: 760 LVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTG-GGFPPLHRLEIWGLDALEEW 818
Query: 444 TMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQRLRTFKDMEWRY 503
+ G+MP L +L + C L+++P+ L I SL++L + + ++++ K E Y
Sbjct: 819 IVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVS--KGGEDYY 876
Query: 504 DIQLYP 509
+Q P
Sbjct: 877 KMQHVP 882
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 130/465 (27%), Positives = 211/465 (45%), Gaps = 55/465 (11%)
Query: 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIP---YNSEET----AEHHLKELI 111
ELP +LK C +YL FP +I+ +L W AEG Y++ ET + +L+EL+
Sbjct: 415 ELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQSYLEELV 474
Query: 112 RRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEF----VWSPDMVEEPMANVKRCF 167
RR I + +C+ ++ A++ F V S + N +
Sbjct: 475 RRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTGNSQSPC 534
Query: 168 ILKDLIDFFPSEYSDMYLQSFLNHSSESDRLA---RIDCENF------CKKFKYLRVLDL 218
+ L+ P+ ++++ +N+ + + EN+ + K LRVLDL
Sbjct: 535 RSRRLVYQCPTT---LHVERDINNPKLRSLVVLWHDLWVENWKLLGTSFTRLKLLRVLDL 591
Query: 219 GSAVLD--QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDI 276
+ + P G+ NL L+YL L + LPS L L+ L L + D+
Sbjct: 592 FYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTEFIFVPDV 651
Query: 277 WMMQKLMHLNFGSITLPAPPTNYSS-----SLKNLIFVSALHPISCTPDILGRLPNIQTL 331
+M ++ L + + L S L+ L++ S H S + D+ G + + TL
Sbjct: 652 FM--RMHELRYLKLPLHMHKKTRLSLRNLVKLETLVYFSTWH--SSSKDLCG-MTRLMTL 706
Query: 332 RISGDLSYYQSRVSKSLCKLQKLEWLKLVN-ESKPSR---MVLS---------------E 372
I +S S+ L+ LE+L +V SK R +VL +
Sbjct: 707 AIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFIHLKHLLLDLYMPRQ 766
Query: 373 YQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVL 432
FP LT + LS L+EDPMP LEKL +++ + L + SY GR++ C G GGFP+LK L
Sbjct: 767 QHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSG-GGFPQLKKL 825
Query: 433 HLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSL 477
+ + +EW + G+MP LE+L + C L+++P+ L I SL
Sbjct: 826 EIVGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGLRFIYSL 870
|
Possible disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 130/521 (24%), Positives = 223/521 (42%), Gaps = 49/521 (9%)
Query: 16 GPLIRLKHEA--WQFFILHYGSMPLENYLQGETIPTILSRICSVL--ELPFHLKICCIYL 71
G L+ KH W+ + GS + + + RI S+ +LP HLK C + L
Sbjct: 371 GGLLANKHTVPEWKRVFDNIGSQIVGGSWLDDNSLNSVYRILSLSYEDLPTHLKHCFLNL 430
Query: 72 CVFPPSIEISTRQLYQLWEAEGFIPYNS-EETAEHHLKELIRRGFIQVSKRRAGGTIKSC 130
FP EIST L+ W AEG ++ E++ E++L+EL+RR + K C
Sbjct: 431 AHFPEDSEISTYSLFYYWAAEGIYDGSTIEDSGEYYLEELVRRNLVIADDNYLSWQSKYC 490
Query: 131 YFPSIVDTSLFLVAEKTEFVW-------SPDMVEEPMANVKRCFILKDLIDFFPSEYSDM 183
++ A++ F+ + + + + +R I +
Sbjct: 491 QMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHKNKT 550
Query: 184 YLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKL 241
++S + E D R + LRVLDL + + P + L L+YL L
Sbjct: 551 KVRSLIVPRFEEDYWIR--SASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSL 608
Query: 242 NIPSLKCLPSQ-------------------------LCTLLNLQTLQMPSSYIDQSPEDI 276
+ LPS L ++ L+ L +P D++ ++
Sbjct: 609 YEAKVSHLPSTMRNLKLLLYLNLRVDTEEPIHVPNVLKEMIQLRYLSLPLKMDDKTKLEL 668
Query: 277 WMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILG----RLPNIQTLR 332
+ L +L +G T + T+ K L +++ C + L L N++TL
Sbjct: 669 GDLVNLEYL-YGFSTQHSSVTDLLRMTK-LRYLAVSLSERCNFETLSSSLRELRNLETLN 726
Query: 333 ISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKED 392
L Y L LK + + + ++QFPP L HL L ++ED
Sbjct: 727 FLFSLETYMVDYMGEFV-LDHFIHLKQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEED 785
Query: 393 PMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPK 452
PMP LEKL +++ ++L + ++LG ++ C GGFP+L V+ + L+EW + G+MP
Sbjct: 786 PMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQLCVIEISKESELEEWIVEEGSMPC 844
Query: 453 LESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQRL 493
L +L +D C L++LP+ L I SL++L + + E +++L
Sbjct: 845 LRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKL 885
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 134/526 (25%), Positives = 237/526 (45%), Gaps = 59/526 (11%)
Query: 16 GPLIRLKHEA--WQFFILHYGSMPLENYLQGETIPTILSRICSVL--ELPFHLKICCIYL 71
G L+ KH W+ + GS + + ++RI S+ +LP HLK +YL
Sbjct: 371 GGLLANKHTVPEWKRVSDNIGSQIVGGSCLDDNSLNSVNRILSLSYEDLPTHLKHRFLYL 430
Query: 72 CVFPPSIEISTRQLYQLWEAEGFIPYNS-EETAEHHLKELIRRGFIQVSKRRAGGTIKSC 130
FP +I T+ L+ W AEG ++ +++ E++L+EL+RR + R C
Sbjct: 431 AHFPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRRNLVIADNRYLSLEFNFC 490
Query: 131 YFPSIVDTSLFLVAEKTEFVW------SPDMVEEPMANVKRCFILKDLIDF-FPSEYSDM 183
++ A++ F+ S + + R F + F ++
Sbjct: 491 QMHDMMREVCLSKAKEENFLQIIKDPTSTSTINAQSPSRSRRFSIHSGKAFHILGHRNNP 550
Query: 184 YLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKL 241
++S + E D R + LRVLDL + + P + L L+YL L
Sbjct: 551 KVRSLIVSRFEEDFWIR--SASVFHNLTLLRVLDLSRVKFEGGKLPSSIGGLIHLRYLSL 608
Query: 242 NIPSLKCLPSQLCTLLNLQTLQMPSSYID-QSPEDI-WMMQKLMHLNFGSITLPAPPTNY 299
+ LPS T+ NL+ L + +D + P + ++++++ L + ++LP +
Sbjct: 609 YGAVVSHLPS---TMRNLKLLLFLNLRVDNKEPIHVPNVLKEMLELRY--LSLPQEMDDK 663
Query: 300 SS-------SLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQ 352
+ +L+ L + S H S D+L R+ ++ L +S +S SL +L+
Sbjct: 664 TKLELGDLVNLEYLWYFSTQH--SSVTDLL-RMTKLRNLGVSLSERCNFETLSSSLRELR 720
Query: 353 KLEWL------KLVNESKPSRMVLS-------------------EYQFPPSLTHLSLSNT 387
LE L ++V VL ++QFPP L H+ L +
Sbjct: 721 NLEMLNVLFSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLAHIHLVHC 780
Query: 388 ELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA 447
+KEDPMP LEKL +++ + L +++GR++ C GGFP+L L + L+EW +
Sbjct: 781 VMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQLCALGISGESELEEWIVEE 839
Query: 448 GAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQRL 493
G+MP L +L + C L++LP+ L I SL++L + + E +++L
Sbjct: 840 GSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKREWKEKL 885
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 217/475 (45%), Gaps = 44/475 (9%)
Query: 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFI-PYNS----EETAEHHLKELIRR 113
+LP LK C YL FP +I + L+ W AEG I P++ ++T E +L+EL+RR
Sbjct: 413 DLPMQLKHCFFYLAHFPEDYKIDVKILFNYWVAEGIITPFHDGSTIQDTGESYLEELVRR 472
Query: 114 GFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMANVKRCFILKDLI 173
+ V + I+ C ++ A++ F+ + + +
Sbjct: 473 NMVVVEESYLTSRIEYCQMHDMMREVCLSKAKEENFIRVVKVPTTTSTTINAQSPCRSRR 532
Query: 174 DFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKY-----LRVLDLGSAVLD--QF 226
S + L N + S + ++ E F K + LRVLDL + +
Sbjct: 533 LVLHSGNALHMLGHKDNKKARSVLIFGVE-EKFWKPRGFQCLPLLRVLDLSYVQFEGGKL 591
Query: 227 PPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQ--MPSSYIDQSPEDIWMMQKLMH 284
P + +L L++L L + LPS L L L L + + P + MQ+L +
Sbjct: 592 PSSIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQELRY 651
Query: 285 LNF------------GSITLPAPPTNYSS---SLKNLIFVSALHPIS------CTPDILG 323
L G + TN+S+ S+ +L+ ++ L ++ CT + L
Sbjct: 652 LRLPRSMPAKTKLELGDLVNLESLTNFSTKHGSVTDLLRMTKLSVLNVIFSGECTFETL- 710
Query: 324 RLPNIQTLRISGDLSYY---QSRVSKSLCKLQKLEWLKLVNESKPSRM--VLSEYQFPPS 378
L +++ LR LS++ + V+ +L L+++ L + + + +Y+FPP
Sbjct: 711 -LLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLPRFPDQYRFPPH 769
Query: 379 LTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438
L H+ L ++EDPMP LEKL +++ + L ++LGR++ C GGFP+L L +
Sbjct: 770 LAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVC-SKGGFPQLLALKMSYKK 828
Query: 439 WLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQRL 493
L EW + G+MP L +L +D C L++LP+ L + L++L + + E +RL
Sbjct: 829 ELVEWRVEEGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKELKIERMKREWTERL 883
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 113/489 (23%), Positives = 219/489 (44%), Gaps = 73/489 (14%)
Query: 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIPYNS-EETAEHHLKELIRRGFIQ 117
+LP HLK C ++L +P +I T+ L+ W AEG ++ +++ E++L+EL+RR +
Sbjct: 418 DLPTHLKHCFLHLAHYPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRRNLVI 477
Query: 118 VSKRR--AGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPM----------ANVKR 165
R + IK+C ++ A++ F+ ++++P + +R
Sbjct: 478 ADNRYLISEFKIKNCQMHDMMREVCLSKAKEENFL---QIIKDPTCTSTINAQSPSRSRR 534
Query: 166 CFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD- 224
I + ++S + E D R + LRVLDL +
Sbjct: 535 LSIHSGKAFHILGHKRNAKVRSLIVSRFEEDFWIR--SASVFHNLTLLRVLDLSWVKFEG 592
Query: 225 -QFPPGLENLFLLKYLKLNIPSLKCLPSQL----------CTLLNLQTLQMPSSYIDQSP 273
+ P + L L+YL+L + LPS + ++ N + +P+
Sbjct: 593 GKLPCSIGGLIHLRYLRLYGAVVSHLPSTMRNLKLLLYLNLSVHNEDLIHVPN------- 645
Query: 274 EDIWMMQKLMHLNFGSITLPAPPTNYS----SSLKNLIFVSALHPISCTPDILGRLPNIQ 329
++++++ L + +++P + + L NL ++ + L R+ ++
Sbjct: 646 ----VLKEMIELRY--LSIPVKMDDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLR 699
Query: 330 TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKP-----------------------S 366
L +S Y +S SL +L+ LE L ++ K
Sbjct: 700 NLTVSLSERYNFKTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLVV 759
Query: 367 RM--VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSG 424
RM + ++QFPP L H+ L ++EDPMP LEKL +++ ++L+ +++GR++ C
Sbjct: 760 RMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVC-SKD 818
Query: 425 GFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHW 484
GF +L L + L++W + G+MP L +L + C L++LP+ L I SL++L +
Sbjct: 819 GFTQLCALDISKQSELEDWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIEG 878
Query: 485 PQTELRQRL 493
+ E +++L
Sbjct: 879 MKREWKEKL 887
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 126/478 (26%), Positives = 215/478 (44%), Gaps = 65/478 (13%)
Query: 56 SVLELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIP---YNSE---ETAEHHLKE 109
S ELP +LK C +YL FP I +L W AEG + Y+ + + E +++E
Sbjct: 416 SFEELPSYLKHCFLYLAHFPEDHNIKVEKLSYCWAAEGILEPRHYHGQTIRDVGESYIEE 475
Query: 110 LIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMAN-----VK 164
L+RR + + ++C+ ++ L A++ FV ++ P AN
Sbjct: 476 LVRRNMVIAERDVTTLRFEACHLHDMMREVCLLKAKEENFVQIASIL-PPTANSQYPGTS 534
Query: 165 RCFILKDLIDFFPS-EYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVL 223
R F+ ++ S + ++ LQS L + ++ +F + + LRVLDL A
Sbjct: 535 RRFVSQNPTTLHVSRDINNPKLQSLLIVWENRRKSWKLLGSSFI-RLELLRVLDLYKAKF 593
Query: 224 D--QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQM----PSSYIDQSPEDIW 277
+ P G+ L L+YL L++ + LPS L L L L + S ++ P +
Sbjct: 594 EGRNLPSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLLIYLDINVCTKSLFV---PNCLM 650
Query: 278 MMQKLMHLNFGSITLPAPPTNYSSSLK----NLIFVSALHPISCTPDILGRLPNIQTLR- 332
M +L +L P N S +K NL+ + L S L L + +LR
Sbjct: 651 GMHELRYLRL--------PFNTSKEIKLGLCNLVNLETLENFSTENSSLEDLRGMVSLRT 702
Query: 333 ISGDLSYYQSRVS--KSLCKLQKLEWLKLVNESKPSR--------MVL------------ 370
++ L + S+ + S+ ++ LE L + S+ +VL
Sbjct: 703 LTIGLFKHISKETLFASILGMRHLENLSIRTPDGSSKFKRIMEDGIVLDAIHLKQLNLRL 762
Query: 371 ------SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSG 424
E FP LT +SL L EDP+P LEKL ++ ++L ++ G+++ G
Sbjct: 763 YMPKLPDEQHFPSHLTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMVS-SDG 821
Query: 425 GFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDL 482
GFP+L L++ + +EW + G+MP+L +L + C L++LP+ L I S++ LD+
Sbjct: 822 GFPQLHRLYIWGLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDM 879
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 206/461 (44%), Gaps = 59/461 (12%)
Query: 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEG-FIP--YNSE---ETAEHHLKELIR 112
ELP +LK C +YL FP EI+ + L W AEG F P Y+ E + + +++EL+R
Sbjct: 419 ELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVR 478
Query: 113 RGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMANVKRCFILKDL 172
R + + ++C+ ++ L A++ F+ N + L
Sbjct: 479 RNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFL-QITSSRTSTGNSLSIVTSRRL 537
Query: 173 IDFFP------SEYSDMYLQSFLNHSSES---DRLARIDCENFCKKFKYLRVLDLGSAVL 223
+ +P + +D L+S + ++ + + + + + LRVLD+ A L
Sbjct: 538 VYQYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKL 597
Query: 224 --DQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTL-----LNLQTLQMPSSYIDQSPEDI 276
+ + L L+YL L + +P L L LNL L S+ + P +
Sbjct: 598 KGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLV---PNVL 654
Query: 277 WMMQKLMHLNFGSITLPAPPTNYSS-SLKNLIFVSALHPIS---CTPDILGRLPNIQTLR 332
MQ+L +L LP + L NL+ + L S C+ + L + ++TL
Sbjct: 655 KEMQQLRYL-----ALPKDMGRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMVRLRTLT 709
Query: 333 ISGDLSYYQSRVSKSLCKLQKLEWLKLVN-----ESKPSRMVLS---------------- 371
I ++ S+ L+ LE L + + +K + +V
Sbjct: 710 IELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRL 769
Query: 372 --EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL 429
E FP LT L L + L+EDPMP LEKL ++ L+L++ S+ G+++ C SGGFP+L
Sbjct: 770 SKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVC-SSGGFPQL 828
Query: 430 KVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEE 470
+ L +K + ++W + +MP L +L + C L++LP+E
Sbjct: 829 QKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 206/461 (44%), Gaps = 59/461 (12%)
Query: 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEG-FIP--YNSE---ETAEHHLKELIR 112
ELP +LK C +YL FP EI+ + L W AEG F P Y+ E + + +++EL+R
Sbjct: 419 ELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVR 478
Query: 113 RGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMANVKRCFILKDL 172
R + + ++C+ ++ L A++ F+ N + L
Sbjct: 479 RNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFL-QITSSRTSTGNSLSIVTSRRL 537
Query: 173 IDFFP------SEYSDMYLQSFLNHSSES---DRLARIDCENFCKKFKYLRVLDLGSAVL 223
+ +P + +D L+S + ++ + + + + + LRVLD+ A L
Sbjct: 538 VYQYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKL 597
Query: 224 --DQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTL-----LNLQTLQMPSSYIDQSPEDI 276
+ + L L+YL L + +P L L LNL L S+ + P +
Sbjct: 598 KGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLV---PNVL 654
Query: 277 WMMQKLMHLNFGSITLPAPPTNYSS-SLKNLIFVSALHPIS---CTPDILGRLPNIQTLR 332
MQ+L +L LP + L NL+ + L S C+ + L + ++TL
Sbjct: 655 KEMQQLRYL-----ALPKDMGRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMVRLRTLT 709
Query: 333 ISGDLSYYQSRVSKSLCKLQKLEWLKLVN-----ESKPSRMVLS---------------- 371
I ++ S+ L+ LE L + + +K + +V
Sbjct: 710 IELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRL 769
Query: 372 --EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL 429
E FP LT L L + L+EDPMP LEKL ++ L+L++ S+ G+++ C SGGFP+L
Sbjct: 770 SKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVC-SSGGFPQL 828
Query: 430 KVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEE 470
+ L +K + ++W + +MP L +L + C L++LP+E
Sbjct: 829 QKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | ||||||
| 359496848 | 856 | PREDICTED: disease resistance RPP8-like | 0.871 | 0.521 | 0.305 | 1e-48 | |
| 147766035 | 902 | hypothetical protein VITISV_038742 [Viti | 0.871 | 0.494 | 0.301 | 6e-47 | |
| 359491404 | 922 | PREDICTED: probable disease resistance R | 0.828 | 0.459 | 0.316 | 5e-44 | |
| 255577203 | 1064 | conserved hypothetical protein [Ricinus | 0.820 | 0.394 | 0.301 | 3e-40 | |
| 444301787 | 878 | NBS type disease resistance protein [Mal | 0.828 | 0.482 | 0.315 | 3e-39 | |
| 225465433 | 908 | PREDICTED: disease resistance protein RP | 0.919 | 0.518 | 0.301 | 4e-39 | |
| 339431373 | 968 | putative CC-NBS-LRR protein [Malus x dom | 0.914 | 0.483 | 0.290 | 5e-39 | |
| 225433948 | 1045 | PREDICTED: putative disease resistance p | 0.802 | 0.393 | 0.302 | 8e-39 | |
| 147781606 | 1183 | hypothetical protein VITISV_025760 [Viti | 0.808 | 0.349 | 0.3 | 8e-39 | |
| 359489790 | 944 | PREDICTED: probable disease resistance p | 0.830 | 0.450 | 0.299 | 8e-39 |
| >gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 147/481 (30%), Positives = 236/481 (49%), Gaps = 35/481 (7%)
Query: 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIPYNSEET----AEHHLKELIRRG 114
+LP++LK C +Y +FP +EI +L LW AEGF+ EE+ AE L+EL+ R
Sbjct: 376 DLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRS 435
Query: 115 FIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVW---SPDMVEEPMANVKRCFILKD 171
IQV+++R G IK+C ++ A++ +F+ S ++ +R +
Sbjct: 436 MIQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSS 495
Query: 172 LIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLE 231
L ++ + + + +S L+ S + L R ++ + K LRVLDL P +
Sbjct: 496 LEEYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHALPKEIR 555
Query: 232 NLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSIT 291
L L+YL L L+ LPS + NLQTL + ++ + + P +W M L HL +
Sbjct: 556 ELVHLRYLGLRRTGLQRLPSSIQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTS 615
Query: 292 LPA-PPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCK 350
+ PP + S + +++ PD+LG+L N++ L I G + +S+ L K
Sbjct: 616 IAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVK 675
Query: 351 LQKLEWLK--------------LVNESKPSRMVLSE--------YQFPPSLTHLSLSNTE 388
L L+ L+ L+N+ ++ LS + P+LT + L N+
Sbjct: 676 LSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILENSL 735
Query: 389 LKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAG 448
L +D L KLP +Q+LKL NS+ G+++ C S GFP+L L L + L+EW + G
Sbjct: 736 LVQDIFVILGKLPNLQMLKLLINSFFGKEITCSAS-GFPKLHGLELSELVNLEEWRVDDG 794
Query: 449 AMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQRLRTFKDMEWRYDIQLY 508
AMP L LI+D C L+K+PE + +LR+L L E R+ K +W Y IQ
Sbjct: 795 AMPSLRHLIIDHCDQLKKIPEGFQYLTALRELFLLNMPDEFEARI---KGDDW-YKIQHI 850
Query: 509 P 509
P
Sbjct: 851 P 851
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 234/481 (48%), Gaps = 35/481 (7%)
Query: 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIPYNSEET----AEHHLKELIRRG 114
+LP++LK C +Y +FP +EI +L LW AEGF+ EE+ AE L+EL+ R
Sbjct: 422 DLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRS 481
Query: 115 FIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVW---SPDMVEEPMANVKRCFILKD 171
IQV+++R G IK C ++ A++ +F+ S ++ +R +
Sbjct: 482 MIQVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSS 541
Query: 172 LIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLE 231
L ++ + + + +S L+ S + L R ++ + K LRVLDL P +
Sbjct: 542 LEEYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVLDLERVQTHALPKEIR 601
Query: 232 NLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSIT 291
L L+YL L L+ LPS + NLQTL + ++ + + P +W M L HL +
Sbjct: 602 ELVHLRYLGLRRTGLQRLPSSVQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTS 661
Query: 292 LPA-PPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCK 350
+ PP + S + +++ PD+LG+L N++ L I G + +S+ L K
Sbjct: 662 IAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVK 721
Query: 351 LQKLEWLK--------------LVNESKPSRMVLSE--------YQFPPSLTHLSLSNTE 388
L L+ L+ L+N+ ++ LS + P+LT + L +
Sbjct: 722 LSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILEKSL 781
Query: 389 LKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAG 448
L +D L KLP +Q+LKL NS+ G+++ C S GFP+L L L + L+EW + G
Sbjct: 782 LVQDIFVILGKLPNLQMLKLLINSFFGKEITCSAS-GFPKLHGLELSELVNLEEWRVDDG 840
Query: 449 AMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQRLRTFKDMEWRYDIQLY 508
AMP L L++D C L+K+PE + +LR+L L E R+ K +W Y IQ
Sbjct: 841 AMPSLRHLVIDHCDQLKKIPEGFQYLTALRELFLLNMPDEFEIRI---KGDDW-YKIQHI 896
Query: 509 P 509
P
Sbjct: 897 P 897
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 246/496 (49%), Gaps = 72/496 (14%)
Query: 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIPYNS----EETAEHHLKELIRRG 114
+LP++LK C +Y +FP EIS R+L LW AEGF+ E+ AE +L+EL+ R
Sbjct: 430 DLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELVGRS 489
Query: 115 FIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMV--EEPMANVKRCFILKDL 172
IQV+ R++ G IK+C ++ ++ +F+ D++ E ++++ R L
Sbjct: 490 MIQVATRKSNGRIKTCCVHDLLHELSVSKGKEDQFL---DIIHGEFTVSSLTRVRRLAIH 546
Query: 173 IDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFC-------KKFKYLRVLDLGSAVLDQ 225
+ P+ + ++S L C + C +KFK LR+LDL + +
Sbjct: 547 LGVPPTTKNTSKVRSLL-------------CFDICEPSFQELRKFKLLRILDLEGVYISR 593
Query: 226 FPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHL 285
+ NL L+YL L LK LP + LLNLQTL + S+ ++ P IW MQKL HL
Sbjct: 594 LHSSIGNLIHLRYLGLRGTWLKKLPPSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHL 653
Query: 286 NFGSITLPA--PPTNYSSSLKNLIFVSALHPI-----SCTPDILGRLPNIQTLRISGDLS 338
F + A PPT+ +SL NL LH I S + L +L N++ L + GDL
Sbjct: 654 YFNELEEMAVNPPTD--ASLANL---QTLHGICINQTSYVENGLSKLTNLRELGLHGDLL 708
Query: 339 YYQSRVSKSLCKLQKLEWLKLVNE-----------------SKP-----------SRMVL 370
++ + K + ++LE LKL S P +++
Sbjct: 709 LHEEAIGKWIFSSERLECLKLHTRDVMGDFAKNAIPKLNFSSHPHLIKLHLKGFMAKLFD 768
Query: 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELK 430
+EY FP +LT LSL + L EDPM LE L ++VLKLK ++YLG+++ C GGFP+L
Sbjct: 769 AEY-FPQNLTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMIC-SCGGFPQLH 826
Query: 431 VLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELR 490
L L + ++ W + GAM +L L + C L+ +P L + ++ KL L + E
Sbjct: 827 FLKLSFLNTVERWRIEDGAMGRLRQLEIIECKRLKIVPRGLQPVTTIHKLKLGYMPREFE 886
Query: 491 QRLRTFKDMEWRYDIQ 506
+++ + W Y I+
Sbjct: 887 MKVQERQGENW-YKIE 901
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577203|ref|XP_002529484.1| conserved hypothetical protein [Ricinus communis] gi|223531042|gb|EEF32894.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 143/474 (30%), Positives = 228/474 (48%), Gaps = 54/474 (11%)
Query: 60 LPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGF-----IPYNSEETAEHHLKELIRRG 114
LP +L+ C Y +FP +I R+L LW AEG +SE AE LKELI
Sbjct: 563 LPLYLRRCLFYFGLFPAGYKIPARRLIALWVAEGLGRQQIDEKSSEFIAEMCLKELINYD 622
Query: 115 FIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVW----SPDMVEEPMANVKRCFILK 170
+QV+++ G IK+C P + + FL A++ F+ S V +A + F+
Sbjct: 623 MVQVTEKNINGKIKTCCLPDALRLNWFLKAKEANFLQGHSSSNTCVSRRLALNQNDFVSG 682
Query: 171 DLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFK------YLRVLDLGSAVLD 224
+ + S Y ++ S ++ + S+ A + NF KF +L VLDL +
Sbjct: 683 NNANSLNSCYK--HVVSIMSFDTRSESGAGENIGNFLDKFISRNCFLFLWVLDLENVYKP 740
Query: 225 QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMH 284
+ P + L L+YL L L LP + LLNLQTL + +++ P IW MQKL H
Sbjct: 741 RLPKAVGRLNRLRYLGLRSTYLGILPEFIDKLLNLQTLDLKRAHVGTLPGTIWKMQKLRH 800
Query: 285 L----NFGSITLPAPPTNYSSSLKNL--IFVSALHPISCTPDILGRLPNIQTL-RISG-- 335
L +F S+ +P + L+ L +F+ P+ D L + + + ++SG
Sbjct: 801 LFLDESFRSMFIPRQEDSSLVELQTLWGLFLDEDSPVRNGLDTLSGITKLGLICKMSGPS 860
Query: 336 ---DLSYYQSRVSKSL--CKLQKLEWLKLVNESKPSRMVLSEY----------------- 373
+S + V+ + KLQ L + ++PS + L+
Sbjct: 861 RKTAMSSQLNAVANWVQNLKLQSLRLKSFDDSNQPSELYLNSLSGHVDLTSIYLVGKFMN 920
Query: 374 -----QFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPE 428
+ P +L L+LS + L EDPM TL+KLP ++++ L S+ +K C GGFP+
Sbjct: 921 RNLLSELPNNLIELTLSASGLAEDPMQTLDKLPNLRIVILLLGSFTEKKYLC-SFGGFPK 979
Query: 429 LKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDL 482
L+VL K + L+EW + GA+P L+ L ++ C L+ LP+ L +++LRKL L
Sbjct: 980 LEVLKFKKLVQLEEWKVEEGALPSLKDLEIESCTNLKMLPDGLQHVRTLRKLKL 1033
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|444301787|gb|AGD98930.1| NBS type disease resistance protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 230/469 (49%), Gaps = 45/469 (9%)
Query: 48 PTILSRIC--SVLELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIPY---NSEET 102
P +S I S +LP++LK C +YL +FP S R+L++LW AEG IPY E+
Sbjct: 389 PNAVSAILALSYYDLPYYLKFCFLYLGLFPEDYLFSARKLFRLWIAEGLIPYYDGRMEDL 448
Query: 103 AEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEF--------VWSPD 154
AE +L ELI R +Q ++ A +K C +V A+ EF ++SP
Sbjct: 449 AEEYLNELIDRNMVQAARLSANDRVKHCRLHDLVRDLCISKAKSVEFLYIHLKYGIFSPF 508
Query: 155 MVEEPMANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYL 213
+ A + F S Y S L+S L E I + C++FK L
Sbjct: 509 PCSDSRARHHAIYS-----GFSSSPYVSTPNLRSLLFFKVEQIECG-ISLSDVCRRFKLL 562
Query: 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQ-MPSSYIDQS 272
RVL+L L + P + + LKYL L S++ LP ++ L NLQTL + ++ I +
Sbjct: 563 RVLELEDMKLRRIPSAIGEMIHLKYLGLRHCSIESLPEEIGWLSNLQTLDILENAKICRV 622
Query: 273 PEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLR 332
P+ +W M+ L HL P +L++L ++ ++ S L +++ LR
Sbjct: 623 PDVLWKMKSLRHLYM--YVCPFAGKWRIDTLQHLQTLAGINIDSLRGINSANLISLRKLR 680
Query: 333 ISGDLSYYQSRVSKSLCKLQKLEWL--KLVNESKPSRMVLSE------------------ 372
++G + ++ + SL L L L K ++ PS LS
Sbjct: 681 LAGSFATNRAEIFYSLANLLNLHSLSLKSMDSLFPSLSALSSLRHVIKLHLSGGISKLPN 740
Query: 373 -YQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431
++FPP+L L L + L+ +P+ LEKLPY+ VL+LK +SY G+KL + GFP+L+
Sbjct: 741 PHEFPPNLNQLILHQSRLENNPLEILEKLPYLFVLRLKHSSYRGKKLK-FSANGFPQLEY 799
Query: 432 LHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKL 480
L L+ + L+E + AMPKL SL + C LR LPEE+ + +L++L
Sbjct: 800 LELEFLDSLEELEVEESAMPKLRSLQITYCQKLRMLPEEIKSLTTLQEL 848
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465433|ref|XP_002265568.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 165/547 (30%), Positives = 244/547 (44%), Gaps = 76/547 (13%)
Query: 12 VLIGGPLIRLKH--EAWQFFILHYGSMPLENYLQGETIPTILSRICSVLELPFHLKICCI 69
V IGG L R + W+ F GS LE+ E+I TILS S +LP+HLK C +
Sbjct: 373 VAIGGLLSRKEKIVSLWKKFSDSLGS-ELESNSHLESINTILS--LSYYDLPYHLKSCFL 429
Query: 70 YLCVFPPSIEISTRQLYQLWEAEGFIPYNS----EETAEHHLKELIRRGFIQVSKRRAGG 125
YL +FP I L +LW AEGF+ EETAE L ELIRR +QVS G
Sbjct: 430 YLAIFPEDYTIKCGILTRLWIAEGFVKTKRGVTLEETAEGFLTELIRRSLVQVSDVYIDG 489
Query: 126 TIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMANVKRCFILK-----------DLID 174
IK C+ ++ + AE+ F MA CF + +++D
Sbjct: 490 NIKRCHIHDLMREIILKKAEELSFF-------SVMAGEASCFDGRFRRLSVQNSSNNVLD 542
Query: 175 FFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLF 234
PS+ S +++S ++SE L KFK+L+VLDLG A L++ P L NL
Sbjct: 543 I-PSKKS--HIRSIFLYNSEMFSLG-----TLASKFKFLKVLDLGGAPLERIPEDLGNLL 594
Query: 235 LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMH---------- 284
L+YL L ++ LP + L NLQTL + S ++ P +I +QKL +
Sbjct: 595 HLRYLSLRKTRVRMLPRSIGKLQNLQTLDLKYSLVEDLPVEINRLQKLCNILCFDYAYKA 654
Query: 285 -LNFGSITLPAPPTNYSS--SLKNLIFVSALHPISCTPDILGRLPNIQTLRIS----GDL 337
L + S+ L+ L V H + + LG+L ++ L I+ G+
Sbjct: 655 DLRWDSVRGVHVKEGIGGLEDLQKLTAVDVTHGVQIITE-LGKLRQLRKLGITKLSRGNG 713
Query: 338 SYYQSRVSK-------SLCKLQKLEWLKLVNESKPSRMVLSEY------QFP------PS 378
+ +S S+C L + E L + S P + + Y + P PS
Sbjct: 714 QRLCASISNMVHLKYLSVCSLSEDEILDIQYMSNPPPFLSTVYLMGRLERLPDWISKLPS 773
Query: 379 LTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438
L + L+ + L DPM + LP +Q L L Q S + + C G+ G +LK L + +
Sbjct: 774 LVRVILTRSNLANDPMQVFQALPSLQALSLFQTSVVEQ--LCFGATGIQKLKRLRIYDLI 831
Query: 439 WLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQRLRTFKD 498
L + G +P LE L++ C L +LP + + L L Q EL RL +D
Sbjct: 832 GLKRVKIEDGTLPLLEELMIGRCPQLEELPSGIRHLSKLTTLTFFDLQEEL--RLGMIRD 889
Query: 499 MEWRYDI 505
++I
Sbjct: 890 QGRNFEI 896
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|339431373|gb|AEJ72566.1| putative CC-NBS-LRR protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 158/543 (29%), Positives = 256/543 (47%), Gaps = 75/543 (13%)
Query: 11 SVLIGGPLIRLKHEAWQFFILHYGSMPLENYLQGE----TIPTILSRICSVLELPFHLKI 66
++++ G L+ K ++ I+H + +G+ T+P +L+ S +LPF LK
Sbjct: 403 AIVVLGGLLATKETVHEWDIVHRDILSYLKRAKGDEQHSTVPEVLA--LSYHDLPFQLKP 460
Query: 67 CCIYLCVFPPSIEISTRQLYQLWEAEGFI-PYNS-------EETAEHHLKELIRRGFIQV 118
C +YL FP EI R+L QLW AEG + P++ E+ AE +L LI R +QV
Sbjct: 461 CFLYLSHFPEDFEIPRRKLVQLWIAEGIVSPHHEAEGDETIEDVAERYLGYLINRCMVQV 520
Query: 119 SKRRAGGTIKSCYFPSIVDTSLFLVAEKTEF---VWSPD-----------MVEEPMANVK 164
+ G IK+C ++ A++ F + PD M+ E + K
Sbjct: 521 GTLGSTGNIKTCRLHDLMRDLCLSKAKQENFLQIIHYPDENMVVNSSSSRMLSETTSTGK 580
Query: 165 R----CFILKDLIDFFPSEY---SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLD 217
F+ + + PS+Y S + L+S + + RL +FK L+VLD
Sbjct: 581 TRRLAVFLPSQVDNLIPSKYKEDSHLSLRSLIFFHASKCRLVNWLLTRTIFEFKMLKVLD 640
Query: 218 LGSAV--LDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPS------SYI 269
L ++ P + +L L++L L ++ LPS + L++L+TL + +
Sbjct: 641 LEGVKGPYEKLPKDIGDLVQLQFLSLKKTHIQALPSSIGNLIHLKTLNLQTISKLSWDLT 700
Query: 270 DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQ 329
Q P IW M++L HL A +L NL + C + L +L N++
Sbjct: 701 VQIPNVIWKMERLRHLYLPKWCGNAVDKLQLGNLINLQTLVNFPANKCDVEDLRKLTNLR 760
Query: 330 TLRISGDLSYYQSRV---SKSLCKLQKLEWLKLVNE--SKPSRMV--------------- 369
L + D +++S V S L LE L L +E S P +V
Sbjct: 761 KL-VLNDPKHFKSLVIIFSPQSRTLSCLESLSLTSETLSFPDDVVDVRQLMLSCRRLQKL 819
Query: 370 --------LSEY-QFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLAC 420
L EY QFPP+L L+L + L+EDPMPTLE+LP +++L Q + G+K+ C
Sbjct: 820 HVEGRIEKLPEYHQFPPNLAKLTLWGSNLEEDPMPTLERLPNLRILSGWQ-MFAGKKMVC 878
Query: 421 VGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKL 480
+ GFP+LK L L+ L++WTM GAMP L L + C L+ +P+ L +++L++L
Sbjct: 879 -SNQGFPKLKSLLLRGFSNLEDWTMEEGAMPSLCRLEISSCIKLKMIPDSLRFVKTLQEL 937
Query: 481 DLH 483
+++
Sbjct: 938 EIY 940
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433948|ref|XP_002267553.1| PREDICTED: putative disease resistance protein At1g59780-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 149/492 (30%), Positives = 233/492 (47%), Gaps = 81/492 (16%)
Query: 51 LSRICSVLELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIPYNS-----EETAEH 105
LSRI +LP ++K C Y +FP ++I R+L LW AEG + E+ AE
Sbjct: 545 LSRINK--DLPLYMKRCLFYFGLFPKDLDIPARRLIMLWVAEGLVQPEGGNEAPEDVAER 602
Query: 106 HLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMANVKR 165
+L +LI +G +QV++++ GT+K+C P ++ ++ F+ ++
Sbjct: 603 YLIKLIAQGMVQVTQKKLDGTVKTCRLPYVLQQEWLAKTQEATFLQYHAKTRSELS--PS 660
Query: 166 CFILKDLIDFFPSE---------------------YSDMYLQSFLNHSSESDRLARIDCE 204
+++ L+D +E Y D+ SFL+ + D
Sbjct: 661 TGLIRRLVDHLDNEDVSFGHIHGDENTTSTSLKPHYQDVL--SFLSFDAREGSKPGEDVG 718
Query: 205 NFCKK------FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLN 258
NF + F LRVLDL + P L L L+Y+ L L+ LPS + L N
Sbjct: 719 NFLHECISSSCFLLLRVLDLEHVFRPKLPKQLGKLTRLRYIGLRWTFLQMLPSSISKLQN 778
Query: 259 LQTLQMPSSYIDQSPEDIWMMQKLMHL----NFGSITLPAPPTNYSSSLKNL--IFVSAL 312
LQTL + +YID P IW +Q+L HL ++ S + P +SL+ L +FV
Sbjct: 779 LQTLDLKHTYIDTLPSSIWKVQQLRHLYLSESYRSKFMLRPRVGSLTSLQTLWGLFVDEE 838
Query: 313 HPISCTPDILGRLPNIQTLRISGDLSYYQSR--------VSKSLCKLQKLEWLKLVNES- 363
P+ + L RL NI+ L ++ L+ Q VS + KL L+ L+L ++
Sbjct: 839 TPVK---NGLDRLVNIRKLSLTCRLTPSQDEAMLQQLEAVSNWVLKLNHLQSLRLKSDDA 895
Query: 364 ---------KP-------SRMVLSEY--------QFPPSLTHLSLSNTELKEDPMPTLEK 399
KP SR+ L +FP SLT L+LS + L EDPM TL+K
Sbjct: 896 DNQPWDLDLKPLSGHANLSRVYLLGRLKNPSIVSEFPESLTDLTLSGSRLTEDPMQTLDK 955
Query: 400 LPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVD 459
LP +++L+L SY+G+++ C GGFP+L++L L + L+EW + GA+ L L +
Sbjct: 956 LPNLKILRLLSKSYVGKEMLC-SLGGFPKLRILKLWKLELLEEWNVEEGALQALHDLEIR 1014
Query: 460 PCAYLRKLPEEL 471
C L+ LP+ L
Sbjct: 1015 SCLKLKMLPQGL 1026
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147781606|emb|CAN64832.1| hypothetical protein VITISV_025760 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 230/490 (46%), Gaps = 76/490 (15%)
Query: 49 TILSRICSVLELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIP-----YNSEETA 103
+++ R C P H+K C Y +FP I++ R+L LW AEG + SE+ A
Sbjct: 684 SMIDRKC-----PLHMKRCLFYFGLFPQDIDVPARRLIALWVAEGLMQPEGENETSEDVA 738
Query: 104 EHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMAN- 162
E L +LI +G +QV+K++ G +K+C P + A +T F+ ++
Sbjct: 739 EICLIKLIAQGMVQVTKKKLNGDVKTCRLPDALQRHWLSKARQTTFLQFHTNTRSELSLS 798
Query: 163 ---VKRCFILKDLIDF----FPSEYSD---------MYLQSFLNHSSESDRLARIDCENF 206
V+R D DF EY+ + SFL+ ++ D NF
Sbjct: 799 TGLVRRLVDHLDKEDFSYGHIHGEYNRTLTSLKPRYQHALSFLSFDTQEGSKPGEDIGNF 858
Query: 207 CKK------FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260
+ F LRVLDL + P + L L+YL L L+ LPS + L NLQ
Sbjct: 859 LHRCISSSCFLLLRVLDLEHVFRPKLPETIGKLSRLRYLGLRWTFLEMLPSSISKLQNLQ 918
Query: 261 TLQMPSSYIDQSPEDIWMMQKLMHL----NFGSITLPAPPTNYSSSLKNL--IFVSALHP 314
TL + +YI+ P IW +Q+L HL ++ S +P P ++L+ L +FV P
Sbjct: 919 TLDLKHTYINILPNSIWKIQQLRHLYLSESYRSKFMPQPRVGSLTNLQTLWGLFVDEETP 978
Query: 315 ISCTPDILGRLPNIQTLRISGDLSYYQSR--------VSKSLCKLQKLEWLKLVN---ES 363
+ D L RL N++ L ++ L Q + V+ + KL L L+L + E+
Sbjct: 979 VK---DGLDRLVNLKKLGLTCRLMPSQQQAMLAQLEAVANWVLKLDHLHTLRLKSDDGEN 1035
Query: 364 KPSRMVLSE----------------------YQFPPSLTHLSLSNTELKEDPMPTLEKLP 401
+P + L ++ P SL+ L+LS + L EDP+ L+KLP
Sbjct: 1036 QPGDLDLKPLSGLEKLSSIYLLGRLKNPLVVFESPESLSDLTLSGSGLTEDPLQKLDKLP 1095
Query: 402 YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPC 461
+++L+L SY+G+ + C SGGFP+L+VL L + L+EW + GA+ L L + C
Sbjct: 1096 NLKILRLLAKSYMGKNMLC-SSGGFPQLRVLKLWKLEELEEWNVEEGALRALRDLEIRSC 1154
Query: 462 AYLRKLPEEL 471
L+ LP+EL
Sbjct: 1155 PRLKMLPKEL 1164
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489790|ref|XP_003633978.1| PREDICTED: probable disease resistance protein At1g58602-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 155/517 (29%), Positives = 241/517 (46%), Gaps = 92/517 (17%)
Query: 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIPYNS----EETAEHHLKELIRRG 114
+LP++LK C +Y +FP EI +L LW AEGF+ E+ AE L ELI R
Sbjct: 433 DLPYYLKSCFLYCGIFPEDSEIKASKLIHLWIAEGFVQRRGKEKLEDIAEDFLYELIHRS 492
Query: 115 FIQVSKRRAGGTIKSCYFPSIV---------DTSLFLVAEKTEFVWSPDMVEEPMANVKR 165
+QV++++A G + SC ++ D LF V E +F + P+ +V+R
Sbjct: 493 MVQVARKKANGRVMSCRIHDLLRDLAISEARDAKLFEVHENIDFTF-PN-------SVRR 544
Query: 166 CFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD 224
I + L+ S++ + L+S + +D + R D + + K L VLDLGS +
Sbjct: 545 LSIHQHLVKNNISQHLHNSLLRSLIFF---TDPIERKDWRSIQEHVKLLSVLDLGSIEEN 601
Query: 225 Q-FPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMP--SSYIDQSPEDIWMMQK 281
P + L LK+L + LPS + L+NLQ L + SYI P IW +Q+
Sbjct: 602 YILPKEIGELIHLKFLCIEGFDRVTLPSSIKRLVNLQNLNLGYNDSYI---PCTIWKLQE 658
Query: 282 LMHLN--FGSIT----LPAPPTNY--SSSLKNLIFVSALHPISCTPDILGRLPNIQTLRI 333
L HLN +G I+ L + Y L NL ++ LG+L ++ L +
Sbjct: 659 LRHLNCRYGEISSQFKLNECMSGYLGVEQLTNLQTLALRAGSWLEGGGLGKLTQLRQLDL 718
Query: 334 SG--------------------------DLSYYQSRVSKSLCKLQKLEWLKLVNESK--- 364
G D+ +Y+ +K+L L+W + + E K
Sbjct: 719 RGWLTPYLKKGFYDSIAELTTLRTLVLRDMEFYK---TKTLLNRVGLKWQENIVEEKTLI 775
Query: 365 PSRMVLSEYQ--------------------FPPSLTHLSLSNTELKEDPMPTLEKLPYVQ 404
P M S + +PP+L L+LS+ ELK+DPM LEKLP ++
Sbjct: 776 PGLMSFSRHTYLYKVFLQGKVDRLPEQTEFYPPNLVKLTLSSCELKDDPMLILEKLPTLR 835
Query: 405 VLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYL 464
+L+L NSY+G+ + C GGF +L+ L L S+ L+E T+ GAM L +L + C +
Sbjct: 836 ILELVGNSYVGKNMVC-SFGGFLQLESLELDSLNELEELTVEEGAMCNLRTLQILYCHKM 894
Query: 465 RKLPEELWCIQSLRKLDLHWPQTELRQRLRTFKDMEW 501
+KLP L ++ L KL L EL + ++ + EW
Sbjct: 895 KKLPRGLLQMKKLEKLGLRTRGEELIEEVQQTEGEEW 931
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 512 | ||||||
| TAIR|locus:2176486 | 908 | RPP8 "RECOGNITION OF PERONOSPO | 0.332 | 0.187 | 0.331 | 3.8e-27 | |
| TAIR|locus:2169523 | 901 | AT5G35450 [Arabidopsis thalian | 0.236 | 0.134 | 0.352 | 4.1e-26 | |
| TAIR|locus:2152536 | 908 | AT5G48620 [Arabidopsis thalian | 0.236 | 0.133 | 0.377 | 2.7e-24 | |
| TAIR|locus:2025916 | 906 | AT1G59780 "AT1G59780" [Arabido | 0.439 | 0.248 | 0.321 | 4.9e-24 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.310 | 0.151 | 0.345 | 1.1e-21 | |
| TAIR|locus:2826978 | 1049 | AT1G59218 [Arabidopsis thalian | 0.310 | 0.151 | 0.345 | 1.1e-21 | |
| TAIR|locus:2037639 | 907 | AT1G58390 "AT1G58390" [Arabido | 0.218 | 0.123 | 0.408 | 1.1e-20 | |
| TAIR|locus:504956184 | 1017 | AT1G58807 "AT1G58807" [Arabido | 0.310 | 0.156 | 0.319 | 3.7e-20 | |
| TAIR|locus:2827038 | 1017 | AT1G59124 "AT1G59124" [Arabido | 0.310 | 0.156 | 0.319 | 3.7e-20 | |
| TAIR|locus:504956186 | 1138 | AT1G58602 [Arabidopsis thalian | 0.298 | 0.134 | 0.345 | 7.7e-19 |
| TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 249 (92.7 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 57/172 (33%), Positives = 94/172 (54%)
Query: 322 LGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTH 381
L L N++TL L Y L LK + + + ++QFPP L H
Sbjct: 716 LRELRNLETLNFLFSLETYMVDYMGEFV-LDHFIHLKQLGLAVRMSKIPDQHQFPPHLVH 774
Query: 382 LSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD 441
L L ++EDPMP LEKL +++ ++L + ++LG ++ C GGFP+L V+ + L+
Sbjct: 775 LFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQLCVIEISKESELE 833
Query: 442 EWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQRL 493
EW + G+MP L +L +D C L++LP+ L I SL++L + + E +++L
Sbjct: 834 EWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKL 885
|
|
| TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 43/122 (35%), Positives = 78/122 (63%)
Query: 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431
++Q PP + H+ L ++EDPMP LEKL +++ ++L++ +++GR++ C GGFP+L+
Sbjct: 756 QHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC-SKGGFPQLRA 814
Query: 432 LHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQ 491
L + L+EW + G+MP L LI+ C L +LP+ L + SL++L + + E ++
Sbjct: 815 LQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKREWKE 874
Query: 492 RL 493
+L
Sbjct: 875 KL 876
|
|
| TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 46/122 (37%), Positives = 77/122 (63%)
Query: 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431
++QFPP L H+ L + +KEDPMP LEKL +++ + L +++GR++ C GGFP+L
Sbjct: 765 QHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQLCA 823
Query: 432 LHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQ 491
L + L+EW + G+MP L +L + C L++LP+ L I SL++L + + E ++
Sbjct: 824 LGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKREWKE 883
Query: 492 RL 493
+L
Sbjct: 884 KL 885
|
|
| TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 241 (89.9 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 80/249 (32%), Positives = 135/249 (54%)
Query: 278 MMQKLMHLNFGSITLPAPPTNYSS-SLKNLIFVSALHPISCTPDI----LGRLPNIQTLR 332
+ ++++ L + ++LP ++ + L NL+ + L S T D L R+ ++TL+
Sbjct: 641 VFKEMLELRY--LSLPWERSSLTKLELGNLLKLETLINFS-TKDSSVTDLHRMTKLRTLQ 697
Query: 333 I--SGDLSYYQSRVSKSLCKLQKLEWLKLV-NESK-----PS---RMVLSEYQ-FPPSLT 380
I SG+ + +S +L L LE L + +E+ P R +L + Q FP LT
Sbjct: 698 ILISGE-GLHMETLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLT 756
Query: 381 HLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWL 440
+SL L+EDPMPTLEKL ++V+ L N+Y+GR++ C G GGFP L L + + L
Sbjct: 757 TISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTG-GGFPPLHRLEIWGLDAL 815
Query: 441 DEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQTELRQRLRTFKDME 500
+EW + G+MP L +L + C L+++P+ L I SL++L + + ++++ K E
Sbjct: 816 EEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVS--KGGE 873
Query: 501 WRYDIQLYP 509
Y +Q P
Sbjct: 874 DYYKMQHVP 882
|
|
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 217 (81.4 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 57/165 (34%), Positives = 90/165 (54%)
Query: 323 GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHL 382
G P +Q L I G + +V +S + L L + + + + + E+ P LT +
Sbjct: 823 GGFPQLQKLSIKGLEEWEDWKVEES--SMPVLHTLD-IRDCRKLKQLPDEH-LPSHLTSI 878
Query: 383 SLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442
SL L+EDPMPTLE+L +++ L+L S+ GR + C GSG FP+L L L + L+E
Sbjct: 879 SLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAGSG-FPQLHKLKLSELDGLEE 937
Query: 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH-WPQ 486
W + G+MP+L +L + C L+KLP +Q+L +L W +
Sbjct: 938 WIVEDGSMPQLHTLEIRRCPKLKKLPNGFPQLQNLELNELEEWEE 982
|
|
| TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 217 (81.4 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 57/165 (34%), Positives = 90/165 (54%)
Query: 323 GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHL 382
G P +Q L I G + +V +S + L L + + + + + E+ P LT +
Sbjct: 823 GGFPQLQKLSIKGLEEWEDWKVEES--SMPVLHTLD-IRDCRKLKQLPDEH-LPSHLTSI 878
Query: 383 SLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442
SL L+EDPMPTLE+L +++ L+L S+ GR + C GSG FP+L L L + L+E
Sbjct: 879 SLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAGSG-FPQLHKLKLSELDGLEE 937
Query: 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH-WPQ 486
W + G+MP+L +L + C L+KLP +Q+L +L W +
Sbjct: 938 WIVEDGSMPQLHTLEIRRCPKLKKLPNGFPQLQNLELNELEEWEE 982
|
|
| TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 47/115 (40%), Positives = 69/115 (60%)
Query: 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431
+ FP LT + LS L+EDPMP LEKL +++ + L + SY GR++ C G GGFP+LK
Sbjct: 766 QQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSG-GGFPQLKK 824
Query: 432 LHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLR--KLDLHW 484
L + + +EW + G+MP LE+L + C L+++P+ L I SL L W
Sbjct: 825 LEIVGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGLRFIYSLELVMLGTRW 879
|
|
| TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 53/166 (31%), Positives = 89/166 (53%)
Query: 323 GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHL 382
G P +Q L + + +V +S L + +++ + K L + P LT +
Sbjct: 815 GGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQ----LPDEHLPSHLTSI 870
Query: 383 SLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442
SL L++DP+PTL +L Y++ L+L ++ GR + C G GGFP+L+ L + + +E
Sbjct: 871 SLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCSG-GGFPQLQKLSIYRLEEWEE 929
Query: 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDL--HWPQ 486
W + G+MP L +L +D C L+KLP+ L I SL+ L + W +
Sbjct: 930 WIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKISERWKE 975
|
|
| TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 53/166 (31%), Positives = 89/166 (53%)
Query: 323 GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHL 382
G P +Q L + + +V +S L + +++ + K L + P LT +
Sbjct: 815 GGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQ----LPDEHLPSHLTSI 870
Query: 383 SLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442
SL L++DP+PTL +L Y++ L+L ++ GR + C G GGFP+L+ L + + +E
Sbjct: 871 SLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCSG-GGFPQLQKLSIYRLEEWEE 929
Query: 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDL--HWPQ 486
W + G+MP L +L +D C L+KLP+ L I SL+ L + W +
Sbjct: 930 WIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKISERWKE 975
|
|
| TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 7.7e-19, Sum P(2) = 7.7e-19
Identities = 56/162 (34%), Positives = 86/162 (53%)
Query: 326 PNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLS 385
P +Q L ISG + +V +S L L L + + K + L + P LT +SL
Sbjct: 824 PQLQKLSISGLKEWEDWKVEESSMPL--LLTLNIFDCRKLKQ--LPDEHLPSHLTAISLK 879
Query: 386 NTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTM 445
L EDP+PTLE+L +++ L L + GR + C G GGFP+L L L + L+EW +
Sbjct: 880 KCGL-EDPIPTLERLVHLKELSLSE--LCGRIMVCTG-GGFPQLHKLDLSELDGLEEWIV 935
Query: 446 GAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH-WPQ 486
G+MP+L +L + C L+KLP +Q+L ++ W +
Sbjct: 936 EDGSMPRLHTLEIRRCLKLKKLPNGFPQLQNLHLTEVEEWEE 977
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 512 | |||
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-04 | |
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 0.002 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 18/182 (9%)
Query: 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS 272
L+ LDL ++ P L NL LK L L+ L LP L L NL L + + I
Sbjct: 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL 201
Query: 273 PEDIWMMQKLMHLNFGS---ITLPAPPTNYSSSLKNLIFVSAL----HPISCTPDILGRL 325
P +I ++ L L+ + I L SSL NL +S L + + P+ +G L
Sbjct: 202 PPEIELLSALEELDLSNNSIIELL-------SSLSNLKNLSGLELSNNKLEDLPESIGNL 254
Query: 326 PNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLS 385
N++TL +S + S +S SL L L L L S + + L L+L
Sbjct: 255 SNLETLDLSNNQ---ISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLL 310
Query: 386 NT 387
T
Sbjct: 311 LT 312
|
Length = 394 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 56 SVLELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIP 96
S LP HLK C +YL +FP I QL +LW AEGF+
Sbjct: 241 SYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281
|
Length = 285 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.9 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.89 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.89 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.85 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.85 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.81 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.79 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.69 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.68 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.68 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.6 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.6 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.6 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.58 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.57 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.56 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.53 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.49 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.48 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.36 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.11 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.09 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.04 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.0 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.99 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.93 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.93 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.89 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.88 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.88 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.84 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.83 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.79 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.76 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.7 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.65 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.62 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.57 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.46 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.4 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.39 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.36 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.14 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.07 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.05 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.03 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.03 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.0 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.93 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.86 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.74 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.71 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.56 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.4 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.4 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.37 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.25 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.75 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.68 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.15 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.71 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.48 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 94.75 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.3 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.13 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.03 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.58 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.56 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.55 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.98 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.74 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.74 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.59 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.59 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 86.45 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 84.06 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=441.23 Aligned_cols=449 Identities=25% Similarity=0.353 Sum_probs=312.4
Q ss_pred CCCCCCchhHHHHhhhccc-CCCHHHHHHHHHHcCCCCC-ccccCCCCHHHHHhhhcccCCCCcchhhHhhhhcccCCCc
Q 010381 1 MENGEKIRLDSVLIGGPLI-RLKHEAWQFFILHYGSMPL-ENYLQGETIPTILSRICSVLELPFHLKICCIYLCVFPPSI 78 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~-~~~~~~W~~~l~~l~~~~~-~~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~~a~fp~~~ 78 (512)
|++|+|+|||++|+|+.|+ |.++++|+++.+.+.+... +..-.++.++++|+ +|||+||+++|.||+|||+||+||
T Consensus 349 ~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLk--lSyd~L~~~lK~CFLycalFPED~ 426 (889)
T KOG4658|consen 349 AEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILK--LSYDNLPEELKSCFLYCALFPEDY 426 (889)
T ss_pred HHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhh--ccHhhhhHHHHHHHHhhccCCccc
Confidence 5899999999999999999 9999999999999988743 22111278999999 999999988999999999999999
Q ss_pred eeCHHHHHHHHHHcCCCC-----CChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHHhhh-----hcC
Q 010381 79 EISTRQLYQLWEAEGFIP-----YNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAE-----KTE 148 (512)
Q Consensus 79 ~i~~~~Li~~w~~~g~~~-----~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~~~~-----~~~ 148 (512)
.|++++|+.+|+|+||+. +++++.|+.|+++|++++++...... ++...|+|||+||++|.++|. .++
T Consensus 427 ~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~ 504 (889)
T KOG4658|consen 427 EIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEEN 504 (889)
T ss_pred ccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccc
Confidence 999999999999999997 68899999999999999999988754 566899999999999999998 566
Q ss_pred ceecCC-CC-----CCCCCceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCC
Q 010381 149 FVWSPD-MV-----EEPMANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSA 221 (512)
Q Consensus 149 ~~~~~~-~~-----~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 221 (512)
++.... +. ...+..+|++++..+.....+....+++|++|.+.++... ...+ .+||..++.||+||+++|
T Consensus 505 ~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~---l~~is~~ff~~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 505 QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW---LLEISGEFFRSLPLLRVLDLSGN 581 (889)
T ss_pred eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchh---hhhcCHHHHhhCcceEEEECCCC
Confidence 544433 11 3455789999999666666444448889999999998630 1144 677799999999999987
Q ss_pred c-CCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcccC--CCCC
Q 010381 222 V-LDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITLP--APPT 297 (512)
Q Consensus 222 ~-l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~--~~~p 297 (512)
. +..+|+.++.+.+||||+++++.++.+|.++++|..|.+|++..+ .+..+|.....+.+|++|.+...... ...-
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l 661 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLL 661 (889)
T ss_pred CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhH
Confidence 6 779999999999999999999999999999999999999999998 66666666667999999988655421 1222
Q ss_pred CCCCCCCCCCeeecCCCCccCchhcCCCCCCCe----EEEeccchhhhhhHHHhccCCCCCcEEEeccCCCC--------
Q 010381 298 NYSSSLKNLIFVSALHPISCTPDILGRLPNIQT----LRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKP-------- 365 (512)
Q Consensus 298 ~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p-------- 365 (512)
..+.++++|+.+............+..+++|++ +.+.++ .....+.++..+.+|+.|.+.+..++
T Consensus 662 ~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~ 738 (889)
T KOG4658|consen 662 KELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC---SKRTLISSLGSLGNLEELSILDCGISEIVIEWEE 738 (889)
T ss_pred HhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc---ccceeecccccccCcceEEEEcCCCchhhccccc
Confidence 334555555555554310111112222222221 111111 22233334444445555544442221
Q ss_pred --------------------CCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCC
Q 010381 366 --------------------SRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGG 425 (512)
Q Consensus 366 --------------------~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 425 (512)
.++.+....+|++|+.|.+.+|...+++++....+..+..+.+..+.+.+...... .++
T Consensus 739 ~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~-l~~ 817 (889)
T KOG4658|consen 739 SLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS-LGG 817 (889)
T ss_pred ccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec-CCC
Confidence 01111112344777777777777666666665556666655555444444422222 455
Q ss_pred CccccEEEecCCCCcceeeeCC----CCccccceeeecCC
Q 010381 426 FPELKVLHLKSMYWLDEWTMGA----GAMPKLESLIVDPC 461 (512)
Q Consensus 426 ~~~L~~L~L~~~~~l~~l~~~~----~~l~~L~~L~l~~c 461 (512)
|+++..+.+.+ ..+..+.... +.+|.+..+.+.+|
T Consensus 818 l~~i~~~~l~~-~~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 818 LPQLYWLPLSF-LKLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred CceeEecccCc-cchhheehhcCcccccCccccccceecc
Confidence 55555555554 2244333222 44444444455443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=403.86 Aligned_cols=451 Identities=17% Similarity=0.135 Sum_probs=323.1
Q ss_pred CCCCCCchhHHHHhhhcccCCCHHHHHHHHHHcCCCCCccccCCCCHHHHHhhhcccCCCCc-chhhHhhhhcccCCCce
Q 010381 1 MENGEKIRLDSVLIGGPLIRLKHEAWQFFILHYGSMPLENYLQGETIPTILSRICSVLELPF-HLKICCIYLCVFPPSIE 79 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~~lsY~~L~~-~~k~cfl~~a~fp~~~~ 79 (512)
|++|+|+||||+++|+.|+..+.++|+++++++.+.+. .+|+++|+ +||++|++ ..|.||+||||||.++.
T Consensus 382 v~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~------~~I~~~L~--~SYd~L~~~~~k~~Fl~ia~ff~~~~ 453 (1153)
T PLN03210 382 ALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLD------GKIEKTLR--VSYDGLNNKKDKAIFRHIACLFNGEK 453 (1153)
T ss_pred HHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCcc------HHHHHHHH--HhhhccCccchhhhhheehhhcCCCC
Confidence 57899999999999999994468999999999988765 78999999 99999987 49999999999999976
Q ss_pred eCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHHhhhhcCc-------eec
Q 010381 80 ISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEF-------VWS 152 (512)
Q Consensus 80 i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~~~~~~~~-------~~~ 152 (512)
+ + .+..|++.+.+. ++..++.|+++++|+... ..++|||++|+|++++++++.. ...
T Consensus 454 ~--~-~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~ 517 (1153)
T PLN03210 454 V--N-DIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVD 517 (1153)
T ss_pred H--H-HHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeC
Confidence 4 3 356677765552 445699999999998754 3589999999999999987641 100
Q ss_pred CCCC------CCCCCceeEEEEEecCCcccc--CCC--CCCCeeEEEEecCCcchh--hhcch-hHHhcCCCeeEEEEec
Q 010381 153 PDMV------EEPMANVKRCFILKDLIDFFP--SEY--SDMYLQSFLNHSSESDRL--ARIDC-ENFCKKFKYLRVLDLG 219 (512)
Q Consensus 153 ~~~~------~~~~~~~r~l~l~~~~~~~~~--~~~--~~~~Lr~L~l~~~~~~~~--~~~~~-~~~~~~~~~L~~L~l~ 219 (512)
..+. .....+++.+++......... ... .+++|+.|.++.+..... ....+ ..+..-.++||.|.+.
T Consensus 518 ~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~ 597 (1153)
T PLN03210 518 AKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD 597 (1153)
T ss_pred HHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec
Confidence 0000 234467788877644333221 122 799999999976542110 11233 4442223568888888
Q ss_pred CCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcccCCCCCC
Q 010381 220 SAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITLPAPPTN 298 (512)
Q Consensus 220 ~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 298 (512)
++.++.+|..+ ...+|+.|++.++.+..+|..+..+++|+.|+|+++ .++.+|. ++.+++|++|++++|.....+|.
T Consensus 598 ~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 598 KYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch
Confidence 88888888776 467888888888888888888888888888888887 6677774 77788888888888877778888
Q ss_pred CCCCCCCCCeeecCC--CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC---C------CC
Q 010381 299 YSSSLKNLIFVSALH--PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK---P------SR 367 (512)
Q Consensus 299 ~~~~l~~L~~l~l~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~---p------~L 367 (512)
.++++++|+.|++++ .+..+|..+ ++++|+.|++++| .....+|.. ..+|+.|++++|.+ | +|
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc--~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L 749 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC--SRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENL 749 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC--CCccccccc---cCCcCeeecCCCcccccccccccccc
Confidence 888888888888875 334455444 6788888888887 334444422 34566666666532 2 22
Q ss_pred cccCcC-------------------CCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCcc
Q 010381 368 MVLSEY-------------------QFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPE 428 (512)
Q Consensus 368 ~~l~~~-------------------~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (512)
..|.+. ..|++|+.|++++|......|..++++++|+.|++++|...+..+.. ..+++
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~s 826 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLES 826 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccc
Confidence 222111 12357778888877666667777778888888888776544433321 24555
Q ss_pred ccEEEecCCCC--------------------cceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 429 LKVLHLKSMYW--------------------LDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 429 L~~L~L~~~~~--------------------l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|+.|++++|.. ++.+|..+..+++|+.|++++|+.++.+|..+..+++|+.+++++|+
T Consensus 827 L~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 55555555544 44556566778999999999999999999988899999999999997
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-28 Score=271.65 Aligned_cols=315 Identities=21% Similarity=0.231 Sum_probs=170.7
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~~L 236 (512)
.+++.+.+..+......+.. .+++|+.|++++|.+.. .+ ..++..+++||+|++++|.++ .+|. +.+++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~----~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L 142 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG----PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC----cCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence 35666666644433323222 66667777766665532 33 344456666666666666554 3332 335555
Q ss_pred CeeeecCCCCc-ccChhhhcCcCCcEEecCCccc-cccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-
Q 010381 237 KYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYI-DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH- 313 (512)
Q Consensus 237 ~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~- 313 (512)
++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|+.|++++
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 55555555554 4555555555555555555533 34555555555555555555555555555555555555555543
Q ss_pred CC-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC----CC-------Cccc-----------
Q 010381 314 PI-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK----PS-------RMVL----------- 370 (512)
Q Consensus 314 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~----p~-------L~~l----------- 370 (512)
.+ +..|..++.+++|++|++++| .....+|..++++++|+.|++++|.+ |. |+.|
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYN--NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCc--eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 11 234445555555555555555 23344455555555555555555422 22 0000
Q ss_pred --CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCC
Q 010381 371 --SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAG 448 (512)
Q Consensus 371 --~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 448 (512)
++..+ ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. ++.+++|+.|++++|.....+|..+.
T Consensus 301 p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 301 PELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred ChhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcEEECCCCeeEeeCChhHh
Confidence 33444 55555555555555555555555555666666555554443332 34555666666665443334555555
Q ss_pred CccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 449 AMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 56666666666666555666667777777777777775
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-28 Score=271.62 Aligned_cols=315 Identities=21% Similarity=0.265 Sum_probs=207.7
Q ss_pred CCceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCccccC
Q 010381 160 MANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLFLLK 237 (512)
Q Consensus 160 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~~L~ 237 (512)
...+|++.+..+......+...+++|++|++++|.... .+ ..+ ..+++|++|++++|.+. .+|..++++++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~----~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG----EIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccc----cCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 35666777664444332222356777777777776542 33 344 77888888888888766 6777788888888
Q ss_pred eeeecCCCCc-ccChhhhcCcCCcEEecCCccc-cccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-
Q 010381 238 YLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYI-DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP- 314 (512)
Q Consensus 238 ~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~- 314 (512)
+|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|+.|++.++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 8888888776 6777788888888888888855 367777888888888888888877777878888888888887751
Q ss_pred C-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC----CCCcccCcCCCCCCccEEEEecccC
Q 010381 315 I-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK----PSRMVLSEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 315 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~----p~L~~l~~~~lp~~L~~L~L~~~~~ 389 (512)
+ +..|..+..+++|+.|++++| .....+|..+.++++|+.|++++|.+ |. ++..+ ++|+.|++++|.+
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l-~~L~~L~L~~n~l 344 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDN--SLSGEIPELVIQLQNLEILHLFSNNFTGKIPV----ALTSL-PRLQVLQLWSNKF 344 (968)
T ss_pred eeccCchhHhhccCcCEEECcCC--eeccCCChhHcCCCCCcEEECCCCccCCcCCh----hHhcC-CCCCEEECcCCCC
Confidence 1 345667777788888888777 45556677777778888888877644 33 45566 7777777777777
Q ss_pred CCCCCCCCCCCcccceeEEEcccccCceeeee----------------------CCCCCccccEEEecCCCCcceeeeCC
Q 010381 390 KEDPMPTLEKLPYVQVLKLKQNSYLGRKLACV----------------------GSGGFPELKVLHLKSMYWLDEWTMGA 447 (512)
Q Consensus 390 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----------------------~~~~~~~L~~L~L~~~~~l~~l~~~~ 447 (512)
.+..|..++.+++|+.|++++|.+.+..+... .++.+++|+.|++++|.....+|..+
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~ 424 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence 66666667777777777777666554333221 02334455555555543333444445
Q ss_pred CCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 448 GAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 425 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 555555555555555444455555556666666666654
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-29 Score=246.64 Aligned_cols=313 Identities=21% Similarity=0.247 Sum_probs=274.4
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCe
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKY 238 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 238 (512)
.++.|+++..+....+.-+. .+|.||++.+..|... +..+ +++ .++..|.+|||+.|.+++.|..+.+-+++-.
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK---nsGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK---NSGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc---cCCCCchh-cccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 56788888877777666666 8999999999998875 3466 777 8999999999999999999999999999999
Q ss_pred eeecCCCCcccChhh-hcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC---C
Q 010381 239 LKLNIPSLKCLPSQL-CTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH---P 314 (512)
Q Consensus 239 L~l~~~~i~~lp~~~-~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~---~ 314 (512)
|+|++|+|..+|..+ .+|.-|-.|||++|.+..+|+.+..+.+|++|++++|.+...-...+..|++|+.|.+++ +
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 999999999999885 489999999999999999999999999999999999998765556677889999999986 3
Q ss_pred CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCC
Q 010381 315 ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPM 394 (512)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~ 394 (512)
...+|..+..+.||+.++++.+ ....+|..+.++.+|+.|+|++|.+..|.- ..+.- .+|++|+++.|+++ ..|
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W-~~lEtLNlSrNQLt-~LP 284 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGNKITELNM-TEGEW-ENLETLNLSRNQLT-VLP 284 (1255)
T ss_pred hhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcCceeeeec-cHHHH-hhhhhhccccchhc-cch
Confidence 4678899999999999999998 778899999999999999999998865431 12233 89999999999986 688
Q ss_pred CCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCC
Q 010381 395 PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCI 474 (512)
Q Consensus 395 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l 474 (512)
+.+..++.|+.|.+.+|.+.-+.++.. ++.+.+|+++...+ +.++-+|.++..|++|+.|.++.|. +..+|.++.-+
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL 361 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLL 361 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccc-eeechhhhhhc
Confidence 899999999999999999876666665 88999999999998 6899999999999999999999887 66789999999
Q ss_pred CCCcEEEccCCh
Q 010381 475 QSLRKLDLHWPQ 486 (512)
Q Consensus 475 ~~L~~L~l~~~~ 486 (512)
+.|+.|++..||
T Consensus 362 ~~l~vLDlreNp 373 (1255)
T KOG0444|consen 362 PDLKVLDLRENP 373 (1255)
T ss_pred CCcceeeccCCc
Confidence 999999999997
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-25 Score=212.18 Aligned_cols=313 Identities=20% Similarity=0.176 Sum_probs=154.8
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccC-ccccCccccCe
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKY 238 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~ 238 (512)
..++.+.+..+....+|.-. ...+++.|.+.+|.+..... +++ .-++.||+|||+.|.|+.+| ..|..-.++++
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s---e~L-~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS---EEL-SALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccccccccH---HHH-HhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 44555555544444444433 55556666666666552111 444 55566667777766666554 23444456667
Q ss_pred eeecCCCCcccC-hhhhcCcCCcEEecCCccccccchhh-hccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CC
Q 010381 239 LKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPEDI-WMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PI 315 (512)
Q Consensus 239 L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~ 315 (512)
|+|++|.|+.+- ..+..+.+|-+|.|+.|.++.+|... .+|++|+.|+|..|.+...---.|..|.+|+.+.+.. .+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 777766666432 23556666666666666666666543 3466666666666665321122344444444444432 11
Q ss_pred cc-------------------------CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 316 SC-------------------------TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 316 ~~-------------------------~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
.. ...++..++.|+.|+++.+ ...+.-+.....+++|+.|+|+.|.+..+..=
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N--aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN--AIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh--hhheeecchhhhcccceeEeccccccccCChh
Confidence 11 1123344444444454444 23333334444444555555555444332222
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeee-CCCCCccccEEEecCCCCcceee-eCCC
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACV-GSGGFPELKVLHLKSMYWLDEWT-MGAG 448 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~l~-~~~~ 448 (512)
.+..+ ..|++|.|++|++....-..|..+.+|++|+|++|.+...+.... .+.++++|+.|.+.+ +.++.+| ..+.
T Consensus 336 sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfs 413 (873)
T KOG4194|consen 336 SFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFS 413 (873)
T ss_pred HHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhc
Confidence 33334 445555555554433222334445555555555554433222110 134455556666555 4455554 3445
Q ss_pred CccccceeeecCCcccCCCCcccCCCCCCcEEEc
Q 010381 449 AMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDL 482 (512)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 482 (512)
++++|+.|++.+|..-..-|..+..+ .|++|.+
T Consensus 414 gl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 414 GLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred cCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 55556666665555433334445444 5555543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-26 Score=223.67 Aligned_cols=310 Identities=18% Similarity=0.182 Sum_probs=259.7
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC--ccCccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD--QFPPGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L 236 (512)
..++.+.+.......+|.+. .+.+|+.|.+.+|... .+ ..+ +.++.||.+++..|+++ .+|..+..+..|
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhh-ccchhhHHHhhhccccccCCCCchhcccccc
Confidence 55677777755666767777 8999999999999876 45 677 89999999999999987 899999999999
Q ss_pred CeeeecCCCCcccChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCC
Q 010381 237 KYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPI 315 (512)
Q Consensus 237 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~ 315 (512)
..|+|++|++++.|..+.+-.++-+|+|++|+|.++|.. +.++..|-.||+++|++. .+|+.+.+|..|++|.++++-
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCCh
Confidence 999999999999999999999999999999999999977 458999999999999984 789999999999999998731
Q ss_pred --ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCC
Q 010381 316 --SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDP 393 (512)
Q Consensus 316 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~ 393 (512)
......+..+++|+.|++++.. .....+|.++..+.+|..++++.|.+|.+-. .+-.+ ++|+.|+|++|.++. .
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe-cly~l-~~LrrLNLS~N~ite-L 260 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIVPE-CLYKL-RNLRRLNLSGNKITE-L 260 (1255)
T ss_pred hhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcchH-HHhhh-hhhheeccCcCceee-e
Confidence 1223445567778888888764 5677889999999999999999998874221 45577 999999999999874 3
Q ss_pred CCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcc--eeeeCCCCccccceeeecCCcccCCCCccc
Q 010381 394 MPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD--EWTMGAGAMPKLESLIVDPCAYLRKLPEEL 471 (512)
Q Consensus 394 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 471 (512)
....+...+|++|+++.|.++. .+.. +..+++|+.|.+.+ +.++ .+|..+|.+..|+.+...+|. +.-+|.++
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~-LP~a--vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEgl 335 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTV-LPDA--VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGL 335 (1255)
T ss_pred eccHHHHhhhhhhccccchhcc-chHH--HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cccCchhh
Confidence 3356677889999999998754 2333 57889999999987 4554 899999999999999999876 88999999
Q ss_pred CCCCCCcEEEccCCh
Q 010381 472 WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 472 ~~l~~L~~L~l~~~~ 486 (512)
..|+.|+.|.++.|.
T Consensus 336 cRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNR 350 (1255)
T ss_pred hhhHHHHHhcccccc
Confidence 999999999999885
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-24 Score=211.18 Aligned_cols=287 Identities=20% Similarity=0.229 Sum_probs=208.3
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch--hHHhcCCCeeEEEEecCCcCCccCc-cccCccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC--ENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFL 235 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~ 235 (512)
..+|.+.++.+.+.+++... .-.+++.|++.+|.+. ++ ..| ..+.+|.+|.|+.|.++.+|. .|..+++
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-----~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-----TLETGHF-DSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-----ccccccc-cccchheeeecccCcccccCHHHhhhcch
Confidence 34555566555555544444 4466667777666665 23 333 666677777777777776663 3455777
Q ss_pred cCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 236 LKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 236 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
|+.|+|..|.|... .-.+..|++|+.|.|..|.+..+-++ +..+.++++|+|..|++...--.++.+|++|+.|+++.
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 77777777766633 33566677777777777766666544 56788889999988888766667788999999999985
Q ss_pred -CC-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC
Q 010381 314 -PI-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE 391 (512)
Q Consensus 314 -~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~ 391 (512)
.| ...++.+...++|+.|+++++ ...+--+.++..+..|+.|.|+.|.+..+.+-.+..+ ++|++|+|++|.+..
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N--~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l-ssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSN--RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL-SSLHKLDLRSNELSW 379 (873)
T ss_pred hhhheeecchhhhcccceeEecccc--ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh-hhhhhhcCcCCeEEE
Confidence 22 445678889999999999999 4555556788899999999999999876655567788 999999999998754
Q ss_pred ---CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee-eeCCCCccccceeeecC
Q 010381 392 ---DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAMPKLESLIVDP 460 (512)
Q Consensus 392 ---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~ 460 (512)
+....|..++.|+.|.+.||.+....-.. +.++++|+.|+|.++. +.++ +..+..+ .|++|.+..
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA--fsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA--FSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred EEecchhhhccchhhhheeecCceeeecchhh--hccCcccceecCCCCc-ceeecccccccc-hhhhhhhcc
Confidence 33345778999999999999986544333 7899999999999954 4444 5666667 888887664
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-24 Score=202.13 Aligned_cols=309 Identities=21% Similarity=0.228 Sum_probs=195.6
Q ss_pred ceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 162 NVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 162 ~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..+++.+..+...+.+++. .+..+..+...+|.+. ++ +++ .++.+|..|++.+|.++.+|+..-.++.|+.|
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-----slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-----SLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccccc-----cCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 3445555545444545444 6666666666666554 34 455 66667777777777777666655557777777
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCC-CCCCCCCeeecCC-CCcc
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYS-SSLKNLIFVSALH-PISC 317 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~l~l~~-~~~~ 317 (512)
+...|.++.+|+.++.+.+|+-|+++.|.+..+| +|..+..|+.|+++.|.+. .+|... .++.++..++++. .+..
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc
Confidence 7777777777777777777777777777777777 5777777777777777663 455544 3788888888875 5577
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC---------------------------------
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK--------------------------------- 364 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~--------------------------------- 364 (512)
.|.++.-+++|..|+++++ ....+|.+++++ +|+.|.+.+|.+
T Consensus 267 ~Pde~clLrsL~rLDlSNN---~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNN---DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred CchHHHHhhhhhhhcccCC---ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 8888888888888888887 677788888888 888888877322
Q ss_pred -------------CCC------ccc-----CcCCCC---------CCccEEEEecccCC---------------------
Q 010381 365 -------------PSR------MVL-----SEYQFP---------PSLTHLSLSNTELK--------------------- 390 (512)
Q Consensus 365 -------------p~L------~~l-----~~~~lp---------~~L~~L~L~~~~~~--------------------- 390 (512)
|.. +.| .+...| .-.+..+++.|++.
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 000 000 000000 11222333333221
Q ss_pred --CCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCC----------------------CCcceeee-
Q 010381 391 --EDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM----------------------YWLDEWTM- 445 (512)
Q Consensus 391 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~----------------------~~l~~l~~- 445 (512)
+.++..+..+++|..|++++|-+.+ .+.. .+.+..|+.|+++.+ +.+..++.
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e--~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLLND-LPEE--MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred ccccchHHHHhhhcceeeecccchhhh-cchh--hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH
Confidence 1222233445556666665433322 2211 344445555555552 23334432
Q ss_pred CCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 446 GAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 446 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.+++|.+|..|++.+|. +..+|..++++++|++|+++|||
T Consensus 500 ~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 36789999999999887 88899999999999999999998
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=212.20 Aligned_cols=290 Identities=21% Similarity=0.236 Sum_probs=206.2
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCc------CC-ccCccccCcc-ccCeeeecCCCCcccCh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAV------LD-QFPPGLENLF-LLKYLKLNIPSLKCLPS 251 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~------l~-~lp~~l~~l~-~L~~L~l~~~~i~~lp~ 251 (512)
...+++.+.+.-.... ...+ ...|..|++|+.|.+..+. +. .+|+.+..++ +|++|.+.++.++.+|.
T Consensus 530 g~~~v~~i~l~~~~~~---~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~ 606 (1153)
T PLN03210 530 GTKKVLGITLDIDEID---ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS 606 (1153)
T ss_pred ccceeeEEEeccCccc---eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC
Confidence 3455666655443332 1234 4444999999999997653 22 5788887775 59999999999999998
Q ss_pred hhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC--CCccCchhcCCCCCCC
Q 010381 252 QLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH--PISCTPDILGRLPNIQ 329 (512)
Q Consensus 252 ~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~--~~~~~~~~l~~l~~L~ 329 (512)
.+ ...+|+.|++.++.+..+|.++..+++|+.|+++++...+.+| .++.+++|+.|++.+ .....|..++++++|+
T Consensus 607 ~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 607 NF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred cC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 87 5799999999999999999999999999999999987667777 488899999999985 3467788899999999
Q ss_pred eEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEE
Q 010381 330 TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLK 409 (512)
Q Consensus 330 ~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 409 (512)
.|++++| .....+|..+ ++++|+.|+++++..- + .+...+.+|+.|++++|.+. ..|..+ .+++|++|.+.
T Consensus 685 ~L~L~~c--~~L~~Lp~~i-~l~sL~~L~Lsgc~~L--~--~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~ 755 (1153)
T PLN03210 685 DLDMSRC--ENLEILPTGI-NLKSLYRLNLSGCSRL--K--SFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILC 755 (1153)
T ss_pred EEeCCCC--CCcCccCCcC-CCCCCCEEeCCCCCCc--c--ccccccCCcCeeecCCCccc-cccccc-ccccccccccc
Confidence 9999999 5677777665 7899999999986421 1 22233378899999988875 344333 46666666665
Q ss_pred cccccCc------eeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEcc
Q 010381 410 QNSYLGR------KLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483 (512)
Q Consensus 410 ~~~~~~~------~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 483 (512)
++..... ..... ....++|+.|+|++|+.+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|+++
T Consensus 756 ~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred ccchhhccccccccchhh-hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 4321100 00000 1224566666666666666666666666667777776666666666654 56666666666
Q ss_pred CCh
Q 010381 484 WPQ 486 (512)
Q Consensus 484 ~~~ 486 (512)
+|.
T Consensus 834 ~c~ 836 (1153)
T PLN03210 834 GCS 836 (1153)
T ss_pred CCC
Confidence 664
|
syringae 6; Provisional |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-22 Score=188.73 Aligned_cols=263 Identities=20% Similarity=0.202 Sum_probs=193.9
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcE
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQT 261 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 261 (512)
-.+..+.+++|... .+ +++ .++..|.+|+++.|.+..+|.+++.+..++.|+.++|++..+|..++.+.+|..
T Consensus 45 v~l~~lils~N~l~-----~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-----VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVK 118 (565)
T ss_pred cchhhhhhccCchh-----hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhh
Confidence 34666777777665 44 777 888999999999999889999999999999999999999999999999999999
Q ss_pred EecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhh
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYY 340 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~ 340 (512)
|+.+++.+.++|++++.+..|..++..+|++. ..|.+++++.+|..+++.+ .+...++..-+++.|++|+...+ .
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N---~ 194 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN---L 194 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh---h
Confidence 99999999999999999999999988888874 5566666666665555543 22334444334555555554443 3
Q ss_pred hhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeee
Q 010381 341 QSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLAC 420 (512)
Q Consensus 341 ~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 420 (512)
.+.+|. .++.+ .+|..|++..|.+.. .| .|+.+..|++|.++.|.+.. .+..
T Consensus 195 L~tlP~------------------------~lg~l-~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~-lpae 246 (565)
T KOG0472|consen 195 LETLPP------------------------ELGGL-ESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEM-LPAE 246 (565)
T ss_pred hhcCCh------------------------hhcch-hhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHh-hHHH
Confidence 444444 45555 666666666666642 23 67777888888888666543 2222
Q ss_pred eCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCChH
Q 010381 421 VGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQT 487 (512)
Q Consensus 421 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 487 (512)
. ..+++++.+|++.+ +.++++|..+.-+.+|++|++++|. ++.+|..++++ +|+.|.+.|||-
T Consensus 247 ~-~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 247 H-LKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred H-hcccccceeeeccc-cccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCch
Confidence 2 45788888888888 6788888888888888888888876 77788888888 888888888884
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-21 Score=199.33 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=84.8
Q ss_pred eeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 163 VKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 163 ~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
+..+.+..+.....|.+. ..-+|++|+++++... .+ ..+ ..+++|++|+++.|.+...|.+++++.+|++|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-----~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-----SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYL 96 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-----cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhh
Confidence 334444433333333333 4555999999988876 55 555 77889999999999999999889999999999
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCccccccchhhhcc
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMM 279 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l 279 (512)
+|.+|.+..+|.++..+.+|+.||++.|.+..+|..+..+
T Consensus 97 nL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~l 136 (1081)
T KOG0618|consen 97 NLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVL 136 (1081)
T ss_pred eeccchhhcCchhHHhhhcccccccchhccCCCchhHHhh
Confidence 9999999999999999999999999999887777544333
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=166.91 Aligned_cols=254 Identities=19% Similarity=0.086 Sum_probs=148.3
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcE
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQT 261 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 261 (512)
.+-..|++..+.+. .+ +.+ . ++|+.|++++|.++.+|.. .++|++|++++|.++.+|.. .++|+.
T Consensus 201 ~~~~~LdLs~~~Lt-----sLP~~l-~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESGLT-----TLPDCL-P--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLE 266 (788)
T ss_pred CCCcEEEcCCCCCC-----cCCcch-h--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccce
Confidence 33445566655543 33 222 1 3566677777777666642 35677777777777766642 356677
Q ss_pred EecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhh
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYY 340 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~ 340 (512)
|++++|.+..+|... .+|+.|++++|.+. .+|.. .++|+.|++++ .+..++.. ..+|+.|.+++| .
T Consensus 267 L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N---~ 333 (788)
T PRK15387 267 LSIFSNPLTHLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN---Q 333 (788)
T ss_pred eeccCCchhhhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCC---cccccccccccC---c
Confidence 777777666665422 45666777776664 34432 34566666664 22222221 234666666666 2
Q ss_pred hhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeee
Q 010381 341 QSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLAC 420 (512)
Q Consensus 341 ~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 420 (512)
...+|.. ..+|+.|++++|.+.. +...|++|+.|++++|.+.. .|.. ..+|+.|++++|.+... +.
T Consensus 334 L~~LP~l---p~~Lq~LdLS~N~Ls~-----LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L-P~- 399 (788)
T PRK15387 334 LTSLPTL---PSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL-PV- 399 (788)
T ss_pred ccccccc---ccccceEecCCCccCC-----CCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCC-CC-
Confidence 2334321 1367777777776543 22334677777777777653 3322 24677777777776532 11
Q ss_pred eCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 421 VGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 421 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
..++|+.|++++| .++.+|.. +.+|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 400 ----l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 ----LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ----cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 1356777777774 46666642 3467777777766 55677777777777777777776
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-18 Score=178.24 Aligned_cols=305 Identities=22% Similarity=0.246 Sum_probs=179.5
Q ss_pred eeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeee
Q 010381 163 VKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKL 241 (512)
Q Consensus 163 ~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l 241 (512)
++++.++.+.....|... ..++|+.|.++.|.+. .++.-+.++++|++|+|.+|.+..+|.++..+++|++|++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh-----hCchhhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 777777755666666666 8888888888888775 3422237888888888888888888888888888888888
Q ss_pred cCCCCcccChhhhcCcCCcE-----------------------------------------EecCCccccccchhhhccc
Q 010381 242 NIPSLKCLPSQLCTLLNLQT-----------------------------------------LQMPSSYIDQSPEDIWMMQ 280 (512)
Q Consensus 242 ~~~~i~~lp~~~~~l~~L~~-----------------------------------------L~L~~~~~~~lp~~i~~l~ 280 (512)
++|.+..+|..+..+..++. |||++|.+..+ .+..+.
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~~ 199 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNLA 199 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh--hhhhcc
Confidence 88877766655544433333 33333322200 011111
Q ss_pred ------------------------------------------cCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCcc
Q 010381 281 ------------------------------------------KLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 281 ------------------------------------------~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~ 317 (512)
+|++++++.+++. .+|..++.+.+|+.+.+.+ .+..
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~ 278 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA 278 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh
Confidence 1222222222221 5677788888888888875 4466
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc---------------------------
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL--------------------------- 370 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l--------------------------- 370 (512)
.|..+...++|+.|.+..| ..+-+|.....++.|++|+|..|.++.+-..
T Consensus 279 lp~ri~~~~~L~~l~~~~n---el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYN---ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhh---hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 7777778888888888777 5666777777788888888887655432211
Q ss_pred ----------------------CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCcc
Q 010381 371 ----------------------SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPE 428 (512)
Q Consensus 371 ----------------------~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (512)
-+..+ ++|+.|+|++|.+...+...+.+++.|++|+|+||.++... .. +..++.
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~t--va~~~~ 431 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DT--VANLGR 431 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HH--HHhhhh
Confidence 12233 44555555555443333333444555555555555443221 11 334445
Q ss_pred ccEEEecCCCCcceeeeCCCCccccceeeecCCcccCC--CCcccCCCCCCcEEEccCCh
Q 010381 429 LKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRK--LPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 429 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~ 486 (512)
|++|...+ +.+...| .+..++.|+.++++.|. ++. +|..... ++|++|+++||.
T Consensus 432 L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcC-Cceeech-hhhhcCcceEEecccch-hhhhhhhhhCCC-cccceeeccCCc
Confidence 55554444 3344444 35556666666666554 322 2222211 677777777776
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-17 Score=170.20 Aligned_cols=244 Identities=19% Similarity=0.219 Sum_probs=174.1
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCc
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~ 290 (512)
.+..+|+++++.++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 456788888888888877653 478888888888888887664 588888888888888887554 47888888888
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMV 369 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~ 369 (512)
.+. .+|..+. .+|+.|++++ .+..+|..+. .+|+.|++++| ....+|..+. ++|+.|++++|.+..+
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N---~Lt~LP~~lp--~sL~~L~Ls~N~Lt~L-- 319 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN---SIRTLPAHLP--SGITHLNVQSNSLTAL-- 319 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC---ccccCcccch--hhHHHHHhcCCccccC--
Confidence 875 6676554 4678888875 3344554443 47889999887 3334444332 4688888888766431
Q ss_pred cCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCC
Q 010381 370 LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGA 449 (512)
Q Consensus 370 l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 449 (512)
-..+|++|+.|++++|.++. .|..+ .++|+.|++++|.+.. .+.. -.++|+.|+|++| .+..+|..+.
T Consensus 320 --P~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~----lp~~L~~LdLs~N-~Lt~LP~~l~- 387 (754)
T PRK15370 320 --PETLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPET----LPPTITTLDVSRN-ALTNLPENLP- 387 (754)
T ss_pred --CccccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChh----hcCCcCEEECCCC-cCCCCCHhHH-
Confidence 11234789999999998865 44444 3689999999988763 2221 1368999999995 5777776443
Q ss_pred ccccceeeecCCcccCCCCccc----CCCCCCcEEEccCCh
Q 010381 450 MPKLESLIVDPCAYLRKLPEEL----WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 450 l~~L~~L~l~~c~~l~~lp~~~----~~l~~L~~L~l~~~~ 486 (512)
++|+.|++++|. +..+|..+ ..++++..+++.+||
T Consensus 388 -~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 -AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 479999999987 55676644 345888999999998
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-15 Score=156.46 Aligned_cols=262 Identities=15% Similarity=0.063 Sum_probs=189.2
Q ss_pred eeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeec
Q 010381 163 VKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLN 242 (512)
Q Consensus 163 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~ 242 (512)
-..+.+..+....+|... .++++.|.+.+|.+. .++ ..+++|++|++++|.++.+|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt-----~LP---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-----SLP---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC-----CCC---CCCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 445666655555544433 347999999988775 222 3468899999999999988864 3689999999
Q ss_pred CCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchh
Q 010381 243 IPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDI 321 (512)
Q Consensus 243 ~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~ 321 (512)
+|.++.+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.+.+ +|.... +|+.|++.+ .+..+|.
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~---~L~~L~Ls~N~L~~LP~- 339 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLTSLPT- 339 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCCcc---cccccccccCccccccc-
Confidence 9999888763 36788999999999988863 4789999999998864 554333 455666664 2233332
Q ss_pred cCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCc
Q 010381 322 LGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLP 401 (512)
Q Consensus 322 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~ 401 (512)
-..+|+.|++++| ....+|.. ..+|+.|++++|.+.. +..+|.+|+.|++++|.+.. .|.. .+
T Consensus 340 --lp~~Lq~LdLS~N---~Ls~LP~l---p~~L~~L~Ls~N~L~~-----LP~l~~~L~~LdLs~N~Lt~-LP~l---~s 402 (788)
T PRK15387 340 --LPSGLQELSVSDN---QLASLPTL---PSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNRLTS-LPVL---PS 402 (788)
T ss_pred --cccccceEecCCC---ccCCCCCC---Ccccceehhhcccccc-----CcccccccceEEecCCcccC-CCCc---cc
Confidence 1247999999998 34445542 3578888998887653 22334789999999999874 3332 36
Q ss_pred ccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCccc
Q 010381 402 YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEEL 471 (512)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 471 (512)
+|+.|++++|.+.. .+. ...+|+.|++++ +.++.+|..+..+++|+.|++++|+.....|..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~-----l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPM-----LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCC-CCc-----chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 79999999998764 222 235788999998 5688999889999999999999999765544433
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-17 Score=138.33 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=99.8
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
..+.+.+.|.++.|.++.+|..+..+.+|+.|++.+|+|+++|.+++.+++|+.|++.-|.+..+|.+++.++.|+.||+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 45556666667777777667777777777777777777777777777777777777776666667777777777777777
Q ss_pred CCcccCC-CCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCC
Q 010381 288 GSITLPA-PPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNES 363 (512)
Q Consensus 288 ~~~~~~~-~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 363 (512)
++|++.. .+|..+..|+.|+.+.++. .+..+|..++++++|+.|.+..+ ..-++|..++.+..|+.|.+.+|+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhcccce
Confidence 7666654 4566666666666666653 34556666666666666666665 444556666666555555555544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=160.31 Aligned_cols=223 Identities=20% Similarity=0.244 Sum_probs=114.6
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcc
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~ 291 (512)
.|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|++++|.
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 45666666666665555443 356666666666665555443 356666666666556655443 356666666655
Q ss_pred cCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
+. .+|..+. ++|+.|++++ .+..+|..+. ++|+.|++++| ....+|..+ .++|+.|++++|.+..+
T Consensus 274 L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N---~Lt~LP~~l--~~sL~~L~Ls~N~Lt~L--- 340 (754)
T PRK15370 274 IS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN---SLTALPETL--PPGLKTLEAGENALTSL--- 340 (754)
T ss_pred cC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC---ccccCCccc--cccceeccccCCccccC---
Confidence 54 3454443 3555666553 2222332221 34556666655 222333322 24566666666544321
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCC---
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA--- 447 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~--- 447 (512)
-..+|++|+.|++++|.+.. .|..+ .++|+.|++++|.+... +.. -.++|+.|++++ +.+..+|..+
T Consensus 341 -P~~l~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~L-P~~----l~~sL~~LdLs~-N~L~~LP~sl~~~ 410 (754)
T PRK15370 341 -PASLPPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNL-PEN----LPAALQIMQASR-NNLVRLPESLPHF 410 (754)
T ss_pred -ChhhcCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCC-CHh----HHHHHHHHhhcc-CCcccCchhHHHH
Confidence 11233566677776666542 33332 24666677766665432 111 113566666666 3455554322
Q ss_pred -CCccccceeeecCCcc
Q 010381 448 -GAMPKLESLIVDPCAY 463 (512)
Q Consensus 448 -~~l~~L~~L~l~~c~~ 463 (512)
+.++++..|++.+|+.
T Consensus 411 ~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hhcCCCccEEEeeCCCc
Confidence 3346666666666663
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-17 Score=137.47 Aligned_cols=161 Identities=20% Similarity=0.335 Sum_probs=143.1
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 259 (512)
+++++..|.+++|... .+ +.+ ..+.+|++|++.+|.++++|.+++.+++||.|++.-|++..+|..++.++-|
T Consensus 31 ~~s~ITrLtLSHNKl~-----~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-----VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCcee-----ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 7888888899988876 45 777 8999999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCccc--cccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEecc
Q 010381 260 QTLQMPSSYI--DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 260 ~~L~L~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~ 336 (512)
+.||+++|++ ..+|..+..+..|+.|++++|.+ ..+|..++++++|+.+.++. ..-.+|.+++.+++|++|++.++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 9999999965 56899999999999999999988 47899999999999999985 45788999999999999999998
Q ss_pred chhhhhhHHHhccCC
Q 010381 337 LSYYQSRVSKSLCKL 351 (512)
Q Consensus 337 ~~~~~~~l~~~l~~l 351 (512)
....+|..++++
T Consensus 184 ---rl~vlppel~~l 195 (264)
T KOG0617|consen 184 ---RLTVLPPELANL 195 (264)
T ss_pred ---eeeecChhhhhh
Confidence 455566655543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.7e-15 Score=157.83 Aligned_cols=294 Identities=19% Similarity=0.155 Sum_probs=186.3
Q ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCC-CceeEEEcCHHHHHHHHHhhhhc--CceecCCCC---
Q 010381 83 RQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAG-GTIKSCYFPSIVDTSLFLVAEKT--EFVWSPDMV--- 156 (512)
Q Consensus 83 ~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~-~~~~~~~mhdli~~~~~~~~~~~--~~~~~~~~~--- 156 (512)
.++.++..-..+++++.+...+..+..|++.||++..+.... ......++-++++.-.....+.+ .......+.
T Consensus 410 ~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe 489 (889)
T KOG4658|consen 410 EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVRE 489 (889)
T ss_pred HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHH
Confidence 567778888888889999999999999999999998432111 11122233333333333322211 011111111
Q ss_pred ------CCCCCceeEEEEEec-CCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCc--CCccC
Q 010381 157 ------EEPMANVKRCFILKD-LIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAV--LDQFP 227 (512)
Q Consensus 157 ------~~~~~~~r~l~l~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~lp 227 (512)
......-....+... .....+........|.+.+.++.+.. +..- ..++.|++|-+.++. +..++
T Consensus 490 ~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~-----~~~~-~~~~~L~tLll~~n~~~l~~is 563 (889)
T KOG4658|consen 490 MALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH-----IAGS-SENPKLRTLLLQRNSDWLLEIS 563 (889)
T ss_pred HHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh-----ccCC-CCCCccceEEEeecchhhhhcC
Confidence 001111111222211 22222222266788999999887752 2222 456689999999986 55555
Q ss_pred -ccccCccccCeeeecCC-CCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCC
Q 010381 228 -PGLENLFLLKYLKLNIP-SLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKN 305 (512)
Q Consensus 228 -~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 305 (512)
+.|..++.|++|++++| .+..+|.+|++|.+|++|+++++.+..+|.+++++++|.+||+..+.....+|.....|.+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 44778999999999976 5779999999999999999999999999999999999999999988776666777777999
Q ss_pred CCeeecCCC----CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCc----EEEeccCC---CCCCcccCcCC
Q 010381 306 LIFVSALHP----ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLE----WLKLVNES---KPSRMVLSEYQ 374 (512)
Q Consensus 306 L~~l~l~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~----~L~l~~~~---~p~L~~l~~~~ 374 (512)
|++|.+..+ .......+..+.+|+.+.+.... . .+...+..+..|. .+.+.+.. .+. .+..
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s--~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~----~~~~ 715 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISS--V--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLIS----SLGS 715 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheeecch--h--HhHhhhhhhHHHHHHhHhhhhcccccceeec----cccc
Confidence 999998742 13344556677777777776552 1 1111122222222 22211111 112 4556
Q ss_pred CCCCccEEEEecccCCC
Q 010381 375 FPPSLTHLSLSNTELKE 391 (512)
Q Consensus 375 lp~~L~~L~L~~~~~~~ 391 (512)
+ .+|+.|.+.+|.+.+
T Consensus 716 l-~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 716 L-GNLEELSILDCGISE 731 (889)
T ss_pred c-cCcceEEEEcCCCch
Confidence 6 888888888887653
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-16 Score=152.55 Aligned_cols=92 Identities=29% Similarity=0.498 Sum_probs=79.2
Q ss_pred CCCCCCchhHHHHhhhccc-CCCHHHHHHHHHHcCCCCCc--cccCCCCHHHHHhhhcccCCCCcchhhHhhhhcccCCC
Q 010381 1 MENGEKIRLDSVLIGGPLI-RLKHEAWQFFILHYGSMPLE--NYLQGETIPTILSRICSVLELPFHLKICCIYLCVFPPS 77 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~-~~~~~~W~~~l~~l~~~~~~--~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~~a~fp~~ 77 (512)
+++|+|+||||+++|+.|+ +.+..+|+++++.+.+...+ +.. ..++.++. +||+.||++.|+||+|||+||++
T Consensus 189 ~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~--~~~~~~l~--~s~~~L~~~~~~~f~~L~~f~~~ 264 (287)
T PF00931_consen 189 VEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD--RSVFSALE--LSYDSLPDELRRCFLYLSIFPEG 264 (287)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC--HHHHHHHH--HHHHSSHTCCHHHHHHGGGSGTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc--ccccccce--echhcCCccHHHHHhhCcCCCCC
Confidence 3689999999999999998 66789999999887766531 112 78999999 99999999999999999999999
Q ss_pred ceeCHHHHHHHHHHcCCCC
Q 010381 78 IEISTRQLYQLWEAEGFIP 96 (512)
Q Consensus 78 ~~i~~~~Li~~w~~~g~~~ 96 (512)
+.|+++.|+++|+++|+++
T Consensus 265 ~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 265 VPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp S-EEHHHHHHHHTT-HHTC
T ss_pred ceECHHHHHHHHHHCCCCc
Confidence 9999999999999999984
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-16 Score=151.10 Aligned_cols=264 Identities=20% Similarity=0.146 Sum_probs=151.7
Q ss_pred hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCcc-------cChhhhcCcCCcEEecCCcccc-
Q 010381 204 ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLKC-------LPSQLCTLLNLQTLQMPSSYID- 270 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~-------lp~~~~~l~~L~~L~L~~~~~~- 270 (512)
..++..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344466677888888888874 355556667778888887765542 3344566778888888877554
Q ss_pred ccchhhhcccc---CceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCC-CCCCeEEEeccc--hhhhhhH
Q 010381 271 QSPEDIWMMQK---LMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRL-PNIQTLRISGDL--SYYQSRV 344 (512)
Q Consensus 271 ~lp~~i~~l~~---L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l-~~L~~L~l~~~~--~~~~~~l 344 (512)
..+..+..+.+ |++|++++|.+..... ......+..+ ++|+.|++++|. ......+
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~------------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGL------------------RLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHH------------------HHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 33444444444 8888887776542000 1222334455 677777777773 1122344
Q ss_pred HHhccCCCCCcEEEeccCCCCC--Cccc--CcCCCCCCccEEEEecccCCCCC----CCCCCCCcccceeEEEcccccCc
Q 010381 345 SKSLCKLQKLEWLKLVNESKPS--RMVL--SEYQFPPSLTHLSLSNTELKEDP----MPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 345 ~~~l~~l~~L~~L~l~~~~~p~--L~~l--~~~~lp~~L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
+..+..+++|+.|++++|.+.. +..+ .+..+ ++|+.|++++|.+.+.. ...+..+++|++|++++|.+.+.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 5556666777777777765531 0000 12334 57777777777665322 22345667777777777766542
Q ss_pred eeeee--C-CCCCccccEEEecCCCCc----ceeeeCCCCccccceeeecCCcccCC----CCcccCCC-CCCcEEEccC
Q 010381 417 KLACV--G-SGGFPELKVLHLKSMYWL----DEWTMGAGAMPKLESLIVDPCAYLRK----LPEELWCI-QSLRKLDLHW 484 (512)
Q Consensus 417 ~~~~~--~-~~~~~~L~~L~L~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~----lp~~~~~l-~~L~~L~l~~ 484 (512)
.+... . ....+.|+.|++++|... ..+......+++|+.+++++|..... +...+... +.|+++++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 22111 0 112367777777775432 12233344557777777777765432 33334444 6777777776
Q ss_pred Ch
Q 010381 485 PQ 486 (512)
Q Consensus 485 ~~ 486 (512)
+|
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 65
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-15 Score=144.08 Aligned_cols=262 Identities=19% Similarity=0.119 Sum_probs=147.8
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCc-------cCccccCccccCeeeecCCCCc-ccChh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQ-------FPPGLENLFLLKYLKLNIPSLK-CLPSQ 252 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-------lp~~l~~l~~L~~L~l~~~~i~-~lp~~ 252 (512)
...+++.|.+.++.........+.......+.++.|+++++.+.. ++..+..+++|++|++++|.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 455577888877776432223443333677778888888776542 3345666778888888888776 44445
Q ss_pred hhcCcC---CcEEecCCccccc-----cchhhhcc-ccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcC
Q 010381 253 LCTLLN---LQTLQMPSSYIDQ-----SPEDIWMM-QKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILG 323 (512)
Q Consensus 253 ~~~l~~---L~~L~L~~~~~~~-----lp~~i~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~ 323 (512)
+..+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.+.+..+ ......+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------------------~~~~~~~~ 162 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------------------EALAKALR 162 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH------------------HHHHHHHH
Confidence 555554 8888888886642 23345566 788888888887753111 12233344
Q ss_pred CCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCCC--ccc--CcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 324 RLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPSR--MVL--SEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 324 ~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L--~~l--~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
.+++|++|++++|. ......++..+..+++|+.|++++|.+... ..+ .+..+ ++|+.|++++|.+.+..+..+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-KSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-CCCCEEecCCCcCchHHHHHH
Confidence 45556666665552 111123344444556666666666544210 000 33445 677777777776654222121
Q ss_pred C-----CCcccceeEEEcccccCcee---eeeCCCCCccccEEEecCCCCcce----eeeCCCCc-cccceeeecCCc
Q 010381 398 E-----KLPYVQVLKLKQNSYLGRKL---ACVGSGGFPELKVLHLKSMYWLDE----WTMGAGAM-PKLESLIVDPCA 462 (512)
Q Consensus 398 ~-----~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~~----l~~~~~~l-~~L~~L~l~~c~ 462 (512)
. ..+.|+.|++++|.+.+... ... ...+++|+.++++++..-.. +....... +.|+++++.+++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 1 23677888887777653211 111 34457788888877533321 22233444 677887777664
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-15 Score=139.10 Aligned_cols=267 Identities=19% Similarity=0.172 Sum_probs=113.9
Q ss_pred EEEEecCCcCCccCc-cccCccccCeeeecCCCCc-ccChhhhcCcCCcEEecCC-ccccccchh-hhccccCceeecCC
Q 010381 214 RVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPS-SYIDQSPED-IWMMQKLMHLNFGS 289 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~-~~~~~lp~~-i~~l~~L~~L~l~~ 289 (512)
..++|..|.|+.+|+ .|+.+++||.|+|++|.|+ --|..+..+.+|-.|-+.+ |+|+.+|.. +++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 344555555554442 3455555555555555555 3344455555555444444 355555533 44555555555544
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccCch-hcCCCCCCCeEEEeccc----------hhhhhhHHHhccCCCCCcEE
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCTPD-ILGRLPNIQTLRISGDL----------SYYQSRVSKSLCKLQKLEWL 357 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~-~l~~l~~L~~L~l~~~~----------~~~~~~l~~~l~~l~~L~~L 357 (512)
|++.-.....+..|++|..|.+.. .+..++. .+..+..++.+++..+. .......|..++........
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 444333333344444444444432 1122222 34556666666655442 01122223333333333333
Q ss_pred EeccCCCCCCcccCcCCCCCCccEE--EE-ecccCCC-CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEE
Q 010381 358 KLVNESKPSRMVLSEYQFPPSLTHL--SL-SNTELKE-DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLH 433 (512)
Q Consensus 358 ~l~~~~~p~L~~l~~~~lp~~L~~L--~L-~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 433 (512)
.+..+++..+. ..++-..++.+ .+ +.|.... .+...|..+++|++|++++|.++...... +.+...++.|.
T Consensus 230 rl~~~Ri~q~~---a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a--Fe~~a~l~eL~ 304 (498)
T KOG4237|consen 230 RLYYKRINQED---ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA--FEGAAELQELY 304 (498)
T ss_pred HHHHHHhcccc---hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh--hcchhhhhhhh
Confidence 33321111000 00000011111 00 1111111 11122455555555555555554433222 44555555555
Q ss_pred ecCCCCcceee-eCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 434 LKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 434 L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|.. +.++.+. ..+.++..|+.|++++|....--|..+..+.+|.+|.+-.||
T Consensus 305 L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 305 LTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 555 3444332 223445555555555555444445555555555555555544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-14 Score=134.56 Aligned_cols=85 Identities=24% Similarity=0.245 Sum_probs=40.0
Q ss_pred cCCCeeEEEEecCCcCC-ccCccccCccccCeeeecC-CCCcccChh-hhcCcCCcEEecCCccccccc-hhhhccccCc
Q 010381 208 KKFKYLRVLDLGSAVLD-QFPPGLENLFLLKYLKLNI-PSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLM 283 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~-~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~ 283 (512)
+.+++||+|||+.|.|+ .-|+.|..+..|-.|-+.+ |+|+.+|.. +++|..|+-|.+.-|.+.-++ ..+..+++|.
T Consensus 88 ~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence 55555555555555554 3344455555444444333 455544443 444555555554444443333 2244455555
Q ss_pred eeecCCccc
Q 010381 284 HLNFGSITL 292 (512)
Q Consensus 284 ~L~l~~~~~ 292 (512)
.|.+.+|.+
T Consensus 168 lLslyDn~~ 176 (498)
T KOG4237|consen 168 LLSLYDNKI 176 (498)
T ss_pred hhcccchhh
Confidence 554444444
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-11 Score=114.39 Aligned_cols=236 Identities=19% Similarity=0.105 Sum_probs=157.4
Q ss_pred ccCccccCeeeecCCCCcccCh--hhhcCcCCcEEecCCccc---cccchhhhccccCceeecCCcccCCCCCCCCCCCC
Q 010381 230 LENLFLLKYLKLNIPSLKCLPS--QLCTLLNLQTLQMPSSYI---DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLK 304 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~---~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 304 (512)
-.++++|+...|+++.+...+. ....|++++.|||+.|-+ ..+-..+..+|+|+.|+++.|.+.- |.
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~~------ 188 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--FI------ 188 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--Cc------
Confidence 3567788888888888776653 567889999999999844 4444556789999999999988742 21
Q ss_pred CCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEE
Q 010381 305 NLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSL 384 (512)
Q Consensus 305 ~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L 384 (512)
.... -..+++|++|.++.|. -....+...+..+++|+.|++..|..--.+.-...-+ ..|+.|+|
T Consensus 189 -----------~s~~--~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~-~~L~~LdL 253 (505)
T KOG3207|consen 189 -----------SSNT--TLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL-QTLQELDL 253 (505)
T ss_pred -----------cccc--hhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh-hHHhhccc
Confidence 0011 1257788899999985 2355566667788999999999973210000012233 88999999
Q ss_pred ecccCCCCC-CCCCCCCcccceeEEEcccccCceeeee----CCCCCccccEEEecCCCCcceeee--CCCCccccceee
Q 010381 385 SNTELKEDP-MPTLEKLPYVQVLKLKQNSYLGRKLACV----GSGGFPELKVLHLKSMYWLDEWTM--GAGAMPKLESLI 457 (512)
Q Consensus 385 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~L~~~~~l~~l~~--~~~~l~~L~~L~ 457 (512)
++|.+.... ....+.+|.|..|+++.+.+........ ....|++|++|.+..+ .+.+|+. .+..+++|+.|.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhh
Confidence 999875432 2456889999999999888754332210 0356899999999994 5556653 345678888888
Q ss_pred ecCCcccCCCC----cccCCCCCCcEEEccCChHHH
Q 010381 458 VDPCAYLRKLP----EELWCIQSLRKLDLHWPQTEL 489 (512)
Q Consensus 458 l~~c~~l~~lp----~~~~~l~~L~~L~l~~~~~~~ 489 (512)
+..++..++-- ..+..+++|..|+=.+|.++-
T Consensus 333 ~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~e 368 (505)
T KOG3207|consen 333 ITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNE 368 (505)
T ss_pred cccccccccccceeEEeeeehhhhhhhcccccChHH
Confidence 88777544321 134455666655555554333
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-10 Score=100.67 Aligned_cols=84 Identities=23% Similarity=0.240 Sum_probs=22.0
Q ss_pred cCCCeeEEEEecCCcCCccCcccc-CccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhh-ccccCcee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLE-NLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIW-MMQKLMHL 285 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~-~l~~L~~L 285 (512)
.+...+|.|+|+++.|+.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.++.+++.+. .+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 44455666777776666542 344 4566777777777766664 45566777777777776666654443 56677777
Q ss_pred ecCCcccC
Q 010381 286 NFGSITLP 293 (512)
Q Consensus 286 ~l~~~~~~ 293 (512)
++++|.+.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 77766653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-10 Score=114.95 Aligned_cols=191 Identities=24% Similarity=0.247 Sum_probs=125.0
Q ss_pred EEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCcc-ccCeeeecCCCCcccChhhhcCcCCcEEecC
Q 010381 187 SFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLF-LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMP 265 (512)
Q Consensus 187 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~ 265 (512)
.+....+.... ....+ ...+.++.|++.++.++.+|.....+. +|+.|++++|.+..+|..++.+++|+.|++.
T Consensus 97 ~l~~~~~~~~~----~~~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRS----NISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccccc----Cchhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccC
Confidence 45555555421 22444 566789999999999998888888885 9999999999999988888999999999999
Q ss_pred CccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-CccCchhcCCCCCCCeEEEeccchhhhhhH
Q 010381 266 SSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP-ISCTPDILGRLPNIQTLRISGDLSYYQSRV 344 (512)
Q Consensus 266 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l 344 (512)
+|.+..+|...+.+++|+.|++++|.+. .+|..+..+..|+.+.+.++ +...+..+..+.++..+.+.++ ....+
T Consensus 172 ~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n---~~~~~ 247 (394)
T COG4886 172 FNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN---KLEDL 247 (394)
T ss_pred CchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc---eeeec
Confidence 9999999887778999999999998884 56655555555666666643 3445555555555555554444 22222
Q ss_pred HHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccC
Q 010381 345 SKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 345 ~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~ 389 (512)
+..++.+++++.|+++.|.+..+. .++.+ .+++.|+++++.+
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~--~~~~~-~~l~~L~~s~n~~ 289 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSIS--SLGSL-TNLRELDLSGNSL 289 (394)
T ss_pred cchhccccccceeccccccccccc--ccccc-CccCEEeccCccc
Confidence 344444444444444444433222 12333 4444444444443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-11 Score=119.98 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=75.5
Q ss_pred EEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCC
Q 010381 216 LDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAP 295 (512)
Q Consensus 216 L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 295 (512)
.|++.|.+..+|..++.+..|..+.++.|.+..+|..++++..|.+|||+.|.+..+|..++.|+ |+.|-+++|++. .
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~-~ 157 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT-S 157 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc-c
Confidence 34444444444444444444444444444444444444444444444444444444444444443 444444444432 3
Q ss_pred CCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC---CCCcccC
Q 010381 296 PTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK---PSRMVLS 371 (512)
Q Consensus 296 ~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~---p~L~~l~ 371 (512)
+|..++.+..|..++.+. .+..++..++.+.+|+.|.+..+ ....+|..+..+ .|..||+++|.+ |- .
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfScNkis~iPv----~ 229 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSCNKISYLPV----D 229 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeecccCceeecch----h
Confidence 444444444444444432 22444445555555555555444 344444444433 455555555432 33 4
Q ss_pred cCCCCCCccEEEEecccC
Q 010381 372 EYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 372 ~~~lp~~L~~L~L~~~~~ 389 (512)
+.++ ..|++|.|.+|.+
T Consensus 230 fr~m-~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 230 FRKM-RHLQVLQLENNPL 246 (722)
T ss_pred hhhh-hhheeeeeccCCC
Confidence 4445 5555555555554
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-10 Score=110.98 Aligned_cols=130 Identities=17% Similarity=0.061 Sum_probs=93.9
Q ss_pred CceeEEEEEecCCccccC--CC-CCCCeeEEEEecCCcchhhhcc-hhHHhcCCCeeEEEEecCCcCCccCcc--ccCcc
Q 010381 161 ANVKRCFILKDLIDFFPS--EY-SDMYLQSFLNHSSESDRLARID-CENFCKKFKYLRVLDLGSAVLDQFPPG--LENLF 234 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~--~~-~~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~lp~~--l~~l~ 234 (512)
+++|.+++.......... .. .++++|.|++++|-+. .+. +..++..+++|+.|+++.|.+....++ -..++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~---nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH---NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHH---hHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 778888998444444333 22 8999999999999876 333 377778999999999999987622222 23678
Q ss_pred ccCeeeecCCCCc--ccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcccC
Q 010381 235 LLKYLKLNIPSLK--CLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 235 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~ 293 (512)
+|+.|.++.|.++ ++-.....+++|+.|+|.+| .+..-.....-+..|+.|||++|.+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 9999999999888 44445567899999999988 33222223445678899999988764
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.1e-10 Score=111.45 Aligned_cols=192 Identities=26% Similarity=0.276 Sum_probs=143.2
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCc-CCcEEecCCccccccchhhhccccCceeecCCcccC
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLL-NLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 293 (512)
.+++..+.+..-+..+..+..+..|++.++.++++|...+.+. +|+.|+++++.+..+|..++.+++|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5777777775444556667889999999999999998888885 999999999999999888999999999999999985
Q ss_pred CCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC---CCCcc
Q 010381 294 APPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK---PSRMV 369 (512)
Q Consensus 294 ~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~---p~L~~ 369 (512)
.+|...+.++.|+.+++++ .+..++..+.....|++|.+.++ .....+..+.++.++..+.+..|.+ +.
T Consensus 177 -~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N---~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~--- 249 (394)
T COG4886 177 -DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN---SIIELLSSLSNLKNLSGLELSNNKLEDLPE--- 249 (394)
T ss_pred -hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC---cceecchhhhhcccccccccCCceeeeccc---
Confidence 5666666778888888875 43555555556666888888776 2445555666677777777666544 23
Q ss_pred cCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce
Q 010381 370 LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 370 l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
.+..+ ++++.|++++|.+..... ++.+.+++.|+++++.+....
T Consensus 250 -~~~~l-~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 -SIGNL-SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred -hhccc-cccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 55666 778888888877654332 777778888888777665443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-09 Score=95.17 Aligned_cols=125 Identities=23% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhh-hcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQL-CTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L 259 (512)
++.++|.|.+.++.+. .++.+...+.+|++|++++|.++.+. .+..+++|+.|++++|.|+.++..+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~-----~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-----TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccc-----cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 5567788888888876 34555235788889999999888764 4777888999999999988886655 368899
Q ss_pred cEEecCCccccccc--hhhhccccCceeecCCcccCCCCCC----CCCCCCCCCeeecC
Q 010381 260 QTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPTN----YSSSLKNLIFVSAL 312 (512)
Q Consensus 260 ~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~l~l~ 312 (512)
++|++++|.+..+. ..+..+++|++|++.+|.+... +. -+..+++|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 99999988775543 3467888899999988887642 21 23456777777653
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-10 Score=104.97 Aligned_cols=244 Identities=17% Similarity=0.167 Sum_probs=120.8
Q ss_pred cCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCC---CCc-ccChh-------hhcCcCCcEEecCCcccc-
Q 010381 208 KKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIP---SLK-CLPSQ-------LCTLLNLQTLQMPSSYID- 270 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~---~i~-~lp~~-------~~~l~~L~~L~L~~~~~~- 270 (512)
..+..+..++|++|.+. .+-..+.+.++|+.-++++- +.. ++|.. +-.+++|++|||+.|-++
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 44555555555555543 22233444445555555441 111 33332 334567777777777442
Q ss_pred -ccc---hhhhccccCceeecCCcccCCCCCCCCCCCC-CCCeeecCCCCccCchhcCCCCCCCeEEEeccc--hhhhhh
Q 010381 271 -QSP---EDIWMMQKLMHLNFGSITLPAPPTNYSSSLK-NLIFVSALHPISCTPDILGRLPNIQTLRISGDL--SYYQSR 343 (512)
Q Consensus 271 -~lp---~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~ 343 (512)
.++ .-+.++..|++|++.+|.+. |.+=+.+. .|..+. .....+.-++|+++....|+ +.....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg---~~ag~~l~~al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLG---PEAGGRLGRALFELA-------VNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCC---hhHHHHHHHHHHHHH-------HHhccCCCcceEEEEeeccccccccHHH
Confidence 222 33566777777777777653 11100000 011111 11123445566666666654 223334
Q ss_pred HHHhccCCCCCcEEEeccCCCC-C-Cccc--CcCCCCCCccEEEEecccCCCC----CCCCCCCCcccceeEEEcccccC
Q 010381 344 VSKSLCKLQKLEWLKLVNESKP-S-RMVL--SEYQFPPSLTHLSLSNTELKED----PMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 344 l~~~l~~l~~L~~L~l~~~~~p-~-L~~l--~~~~lp~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
+...+...+.|+.+.++.|.+- . ...+ .+..+ ++|+.|+|..|.++.. ....+..+++|++|++++|.+..
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 4455556666777777666552 1 0000 33455 6666666666655432 11234455667777777666544
Q ss_pred ceee----eeCCCCCccccEEEecCCCCcc----eeeeCCCCccccceeeecCCcc
Q 010381 416 RKLA----CVGSGGFPELKVLHLKSMYWLD----EWTMGAGAMPKLESLIVDPCAY 463 (512)
Q Consensus 416 ~~~~----~~~~~~~~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~ 463 (512)
..-. .. ....|+|++|.+.+|.... .+...+...|.|+.|++++|..
T Consensus 256 ~Ga~a~~~al-~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 256 EGAIAFVDAL-KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccHHHHHHHH-hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3211 11 2346777777777753322 1223344567777777777764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-10 Score=104.15 Aligned_cols=237 Identities=18% Similarity=0.163 Sum_probs=157.2
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCc---CC-ccCc-------cccCccccCeeeecCCCCc-
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAV---LD-QFPP-------GLENLFLLKYLKLNIPSLK- 247 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~---l~-~lp~-------~l~~l~~L~~L~l~~~~i~- 247 (512)
.+..+..+.+++|.+....-..+ +.+ .+.+.||..+++.-- .. .+|+ .+-.+++|++|+||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L-~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVL-ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHH-hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 67788899999998875445566 455 888899999998643 11 4554 3456789999999999776
Q ss_pred ccCh----hhhcCcCCcEEecCCccccccch--------------hhhccccCceeecCCcccCCCCCCCCCCCCCCCee
Q 010381 248 CLPS----QLCTLLNLQTLQMPSSYIDQSPE--------------DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFV 309 (512)
Q Consensus 248 ~lp~----~~~~l~~L~~L~L~~~~~~~lp~--------------~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 309 (512)
.-+. -+..+..|++|.|.+|.++.... .+..-++|+++..+.|.+.. .+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen-~ga----------- 174 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN-GGA----------- 174 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-ccH-----------
Confidence 3333 36678999999999997753321 12334566666666665421 010
Q ss_pred ecCCCCccCchhcCCCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCCCccc----CcCCCCCCccEEE
Q 010381 310 SALHPISCTPDILGRLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL----SEYQFPPSLTHLS 383 (512)
Q Consensus 310 ~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l----~~~~lp~~L~~L~ 383 (512)
..+...+...+.|+.+.+..+. ......+...+..+++|+.|+|.+|.+..--.. .+..+ ++|+.|.
T Consensus 175 ------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~El~ 247 (382)
T KOG1909|consen 175 ------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLRELN 247 (382)
T ss_pred ------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chheeec
Confidence 2334456667788888887764 223345667788888999999988876311110 23445 7899999
Q ss_pred EecccCCCCCCCCC-----CCCcccceeEEEcccccCcee---eeeCCCCCccccEEEecCCC
Q 010381 384 LSNTELKEDPMPTL-----EKLPYVQVLKLKQNSYLGRKL---ACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 384 L~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~ 438 (512)
++.|.+.......+ ...|+|++|.+.+|.++.... ... ....|.|+.|+|++|.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCccc
Confidence 99998765433332 347889999999888754321 111 3457899999999964
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.7e-11 Score=116.53 Aligned_cols=170 Identities=22% Similarity=0.235 Sum_probs=130.2
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcE
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQT 261 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 261 (512)
..-...+++.|.+. .+ .++ ..+-.|..+.++.|.+..+|..++++..|.+|+|+.|++..+|..++.|+ |+.
T Consensus 75 tdt~~aDlsrNR~~-----elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-----ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred cchhhhhccccccc-----cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 33344555555544 33 333 55566777788888888888888888888888888888888888887655 788
Q ss_pred EecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhh
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYY 340 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~ 340 (512)
|-+++|+++.+|..++.++.|.+||.+.|.+. .+|..++.+.+|+.+.+.. ....+|.++. .-.|.+|+++++ .
T Consensus 148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScN---k 222 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCN---K 222 (722)
T ss_pred EEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccC---c
Confidence 88888888888888888888888888888774 6777888888888777764 3367778887 445778999887 7
Q ss_pred hhhHHHhccCCCCCcEEEeccCCC
Q 010381 341 QSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 341 ~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
...+|..+.++.+|+.|-|.+|-+
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred eeecchhhhhhhhheeeeeccCCC
Confidence 788999999999999999999866
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-10 Score=100.99 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=62.1
Q ss_pred cCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEecc
Q 010381 257 LNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 257 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~ 336 (512)
..|+++||++|.|+.+-+++.-+|+++.|+++.|.+. ..+.+..+.+|+.|+++++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~------------------------~v~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR------------------------TVQNLAELPQLQLLDLSGN 339 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccccee------------------------eehhhhhcccceEeecccc
Confidence 3455555555555555555555555555555555442 1223555666666666665
Q ss_pred chhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc
Q 010381 337 LSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 337 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
....+.. |-.++ -++++|.|++|.+. ....++.+-+|..|++++|++...
T Consensus 340 ---~Ls~~~G------------------------wh~KL-GNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 340 ---LLAECVG------------------------WHLKL-GNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred ---hhHhhhh------------------------hHhhh-cCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhH
Confidence 2222222 33344 45555555555442 233445555555555555554433
Q ss_pred eeeeeCCCCCccccEEEecCC
Q 010381 417 KLACVGSGGFPELKVLHLKSM 437 (512)
Q Consensus 417 ~~~~~~~~~~~~L~~L~L~~~ 437 (512)
...-. ++++|+|+.+.|.++
T Consensus 390 deV~~-IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 390 DEVNH-IGNLPCLETLRLTGN 409 (490)
T ss_pred HHhcc-cccccHHHHHhhcCC
Confidence 22222 455566666555553
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.6e-10 Score=100.19 Aligned_cols=133 Identities=25% Similarity=0.236 Sum_probs=101.7
Q ss_pred chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC
Q 010381 319 PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE 398 (512)
Q Consensus 319 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~ 398 (512)
...+...+.|++++++++ ....+..+..-.+.++.|+++.|.+.... .+..+ ++|+.|+|++|.++. .-.+-.
T Consensus 277 ~~~~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L-~~L~~LDLS~N~Ls~-~~Gwh~ 349 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAEL-PQLQLLDLSGNLLAE-CVGWHL 349 (490)
T ss_pred EEecchHhhhhhcccccc---chhhhhhhhhhccceeEEeccccceeeeh--hhhhc-ccceEeecccchhHh-hhhhHh
Confidence 344455677899999998 56677777778899999999999886444 45667 999999999998753 222334
Q ss_pred CCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee--eeCCCCccccceeeecCCcc
Q 010381 399 KLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW--TMGAGAMPKLESLIVDPCAY 463 (512)
Q Consensus 399 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~ 463 (512)
.+.|++.|.+++|.+..- . |++.+-+|..|++++ +.++.+ ...+|++|.|+.+.+.+||.
T Consensus 350 KLGNIKtL~La~N~iE~L--S--GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL--S--GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhcCEeeeehhhhhHhhh--h--hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 688899999998887432 1 256778999999999 456644 35689999999999999994
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.3e-11 Score=106.58 Aligned_cols=182 Identities=21% Similarity=0.187 Sum_probs=98.6
Q ss_pred CCcEEecCCcccc--ccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEec
Q 010381 258 NLQTLQMPSSYID--QSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISG 335 (512)
Q Consensus 258 ~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~ 335 (512)
.||+|||++..++ ++-.-+..+.+|+.|.+.++.+. ..+...++.-.+|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld----------------------D~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD----------------------DPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC----------------------cHHHHHHhccccceeecccc
Confidence 3666666665442 23334556666666666555543 33334455555666666666
Q ss_pred cchhhhhhHHHhccCCCCCcEEEeccCCC--CCCcccCcCCCCCCccEEEEecccC--CCCCCCC-CCCCcccceeEEEc
Q 010381 336 DLSYYQSRVSKSLCKLQKLEWLKLVNESK--PSRMVLSEYQFPPSLTHLSLSNTEL--KEDPMPT-LEKLPYVQVLKLKQ 410 (512)
Q Consensus 336 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~~--p~L~~l~~~~lp~~L~~L~L~~~~~--~~~~~~~-l~~l~~L~~L~l~~ 410 (512)
|.+-....+...+.+|+.|..|+++|+.. |.... .+.+..++|+.|+|+||.- ....... ...+|+|..|+|++
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv-~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV-AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH-HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 53222222333455666666666666432 11110 1122237778888887741 1112222 24677888888877
Q ss_pred ccccCceeeeeCCCCCccccEEEecCCCCcc-eeeeCCCCccccceeeecCCcc
Q 010381 411 NSYLGRKLACVGSGGFPELKVLHLKSMYWLD-EWTMGAGAMPKLESLIVDPCAY 463 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~ 463 (512)
|.......... +..|+.|++|.++.|..+. ..-..++..|+|.+|++.+|-.
T Consensus 323 ~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 323 SVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 65433322222 5567788888888776554 2223456777888888877743
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-10 Score=107.84 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=41.8
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCc-CC--ccCccccCccccCeeeecCCC-Cc--ccChhhh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAV-LD--QFPPGLENLFLLKYLKLNIPS-LK--CLPSQLC 254 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~lp~~l~~l~~L~~L~l~~~~-i~--~lp~~~~ 254 (512)
.+++++.|.+.++... ++..+..+...+++|+.|++..|. ++ .+-.....+++|+||++++|. |+ .+-....
T Consensus 162 ~CpnIehL~l~gc~~i--Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKI--TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hCCchhhhhhhcceec--cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 5666666666665532 233334444566666666666644 44 111123345666666666652 33 1222233
Q ss_pred cCcCCcEEecCCc
Q 010381 255 TLLNLQTLQMPSS 267 (512)
Q Consensus 255 ~l~~L~~L~L~~~ 267 (512)
.+.+++.+.+++|
T Consensus 240 G~~~l~~~~~kGC 252 (483)
T KOG4341|consen 240 GCKELEKLSLKGC 252 (483)
T ss_pred cchhhhhhhhccc
Confidence 3444555555554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-10 Score=105.86 Aligned_cols=107 Identities=13% Similarity=0.042 Sum_probs=74.0
Q ss_pred CCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCc-CC--ccCccccCccccCeeeecCC-CCc--ccChhhhcC
Q 010381 183 MYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAV-LD--QFPPGLENLFLLKYLKLNIP-SLK--CLPSQLCTL 256 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~lp~~l~~l~~L~~L~l~~~-~i~--~lp~~~~~l 256 (512)
.-||.|.+.++...+ ...+..+..+++++..|++.+|. ++ .+-..-.++.+|++|++..| .++ .+-.....+
T Consensus 138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 346777777776543 23445565889999999999987 55 23233356899999999995 566 333334579
Q ss_pred cCCcEEecCCc-cccc--cchhhhccccCceeecCCcc
Q 010381 257 LNLQTLQMPSS-YIDQ--SPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 257 ~~L~~L~L~~~-~~~~--lp~~i~~l~~L~~L~l~~~~ 291 (512)
++|++|++++| .+.. +.....++.+++.+.+.||.
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 99999999999 6644 33345567777777666654
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-10 Score=102.51 Aligned_cols=181 Identities=22% Similarity=0.195 Sum_probs=95.3
Q ss_pred eeEEEEecCCcCC--ccCccccCccccCeeeecCCCCc-ccChhhhcCcCCcEEecCCc-cccccc--hhhhccccCcee
Q 010381 212 YLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSS-YIDQSP--EDIWMMQKLMHL 285 (512)
Q Consensus 212 ~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~-~~~~lp--~~i~~l~~L~~L 285 (512)
.|+.|||+...++ .+..-++.|.+|+.|.+.++.+. .+...+++-.+|+.|+|+.| .+++.. --+.++..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666777776666 44445566677777777776666 55555666667777777776 554432 224566677777
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhh-hHHHhccCCCCCcEEEeccCCC
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQS-RVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
+++.|....... ..... .--.+|+.|+++++...... .+..-...+
T Consensus 266 NlsWc~l~~~~V------------------tv~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rc------------- 312 (419)
T KOG2120|consen 266 NLSWCFLFTEKV------------------TVAVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRC------------- 312 (419)
T ss_pred CchHhhccchhh------------------hHHHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhC-------------
Confidence 776665532110 00000 11235666777766422111 222223344
Q ss_pred CCCcccCcCCCCCCccEEEEeccc-CCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTE-LKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
++|..|+|+.|. ++......+..++.|++|+++.|.......... +...|+|.+|++.+|-
T Consensus 313 ------------p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 313 ------------PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCV 374 (419)
T ss_pred ------------CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee-eccCcceEEEEecccc
Confidence 455555555442 222222334556666666666555333222222 5666777777777653
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.2e-08 Score=101.75 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=67.5
Q ss_pred eeEEEEecCCcCC-ccCccccCccccCeeeecCCCCc-ccChhhhcCcCCcEEecCCcccc-ccchhhhccccCceeecC
Q 010381 212 YLRVLDLGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 212 ~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~ 288 (512)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3666777777766 66667777777777777777776 67767777777777777777553 566667777777777777
Q ss_pred CcccCCCCCCCCCCC-CCCCeeecC
Q 010381 289 SITLPAPPTNYSSSL-KNLIFVSAL 312 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l-~~L~~l~l~ 312 (512)
+|.+.+.+|..++.+ .++..+++.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCcccccCChHHhhccccCceEEec
Confidence 777776666655542 233444444
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.7e-09 Score=104.63 Aligned_cols=240 Identities=21% Similarity=0.219 Sum_probs=111.6
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCc
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~ 290 (512)
..+..+++..+.+...-..++.+++|.+|++.+|.|+.+...+..+++|++|++++|.|+.+. .+..++.|+.|++++|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 334444455555544333455556666666666666655543555666666666666665553 2555555666666666
Q ss_pred ccCCCCCCCCCCCCCCCeeecCCCCccCchh--cCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALHPISCTPDI--LGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
.+.. ..++..++.|+.+++++........ +..+.+++.+.+.++. ... ...+..+..+..+++..|.+..++
T Consensus 151 ~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~--i~~--i~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 151 LISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS--IRE--IEGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred cchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc--hhc--ccchHHHHHHHHhhcccccceecc
Confidence 5531 2223333444444443210111111 3555666666666552 111 011111222333344555554333
Q ss_pred ccCcCCCCCC--ccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcc--eee
Q 010381 369 VLSEYQFPPS--LTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD--EWT 444 (512)
Q Consensus 369 ~l~~~~lp~~--L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~ 444 (512)
.+..+ .. |+.+.++++.+.. .+..+..+.++..|++..+.+....- ....+.+..+......... ...
T Consensus 225 --~l~~~-~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 225 --GLNEL-VMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG----LERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred --Ccccc-hhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc----ccccchHHHhccCcchhcchhhhh
Confidence 22222 22 6666776666542 11445566666666666555433221 2333444444444422111 111
Q ss_pred e--CCCCccccceeeecCCcccC
Q 010381 445 M--GAGAMPKLESLIVDPCAYLR 465 (512)
Q Consensus 445 ~--~~~~l~~L~~L~l~~c~~l~ 465 (512)
. .....+.++.+.+.+++.-.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccccccccCcccc
Confidence 1 13455666666666665444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-07 Score=67.08 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=25.3
Q ss_pred eeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCc
Q 010381 212 YLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSS 267 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~ 267 (512)
+|++|++++|.++.+| ..|..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3445555555444444 234444444444444444443332 2344444444444444
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-07 Score=86.34 Aligned_cols=226 Identities=19% Similarity=0.189 Sum_probs=129.6
Q ss_pred eEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC---ccCccccCccccCeeeecCCCCcccChhh-hcCcCCcE
Q 010381 186 QSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD---QFPPGLENLFLLKYLKLNIPSLKCLPSQL-CTLLNLQT 261 (512)
Q Consensus 186 r~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~ 261 (512)
.-+.+.++.+.. ..++..|-..++.++.+||.+|.++ ++-.-+.++++|++|+++.|.+...-.++ ..+.+|++
T Consensus 48 ellvln~~~id~--~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 48 ELLVLNGSIIDN--EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred hhheecCCCCCc--chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 345555555432 1233556567888888898888877 44455678888899999888765221122 34678888
Q ss_pred EecCCcc--ccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchh
Q 010381 262 LQMPSSY--IDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSY 339 (512)
Q Consensus 262 L~L~~~~--~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 339 (512)
|-|.++. .+.....+..+|+++.|+++.|.+.. +++.. .+..+ --+.+++|+...|...
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq--------------~n~Dd--~c~e~---~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ--------------LNLDD--NCIED---WSTEVLTLHQLPCLEQ 186 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh--------------hcccc--ccccc---cchhhhhhhcCCcHHH
Confidence 8888873 35666667788888888888875432 11211 01100 1224556666666423
Q ss_pred hhhhHHHhccCCCCCcEEEeccCCCCCCccc-CcCCCCCCccEEEEecccCCC-CCCCCCCCCcccceeEEEcccccCce
Q 010381 340 YQSRVSKSLCKLQKLEWLKLVNESKPSRMVL-SEYQFPPSLTHLSLSNTELKE-DPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 340 ~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l-~~~~lp~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
........-.-++++..+.+..+.+..++.= ....+ +.+..|.|+.+++.+ ...+.+..+++|..|.+.++.+.+..
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~-p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF-PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccCCCC-CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3333333334456777766666543211100 33445 666677777776643 23345667778888888777654321
Q ss_pred ----eeeeCCCCCccccEEE
Q 010381 418 ----LACVGSGGFPELKVLH 433 (512)
Q Consensus 418 ----~~~~~~~~~~~L~~L~ 433 (512)
....-++.+++++.|+
T Consensus 266 ~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 266 RGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cCCcceEEEEeeccceEEec
Confidence 1111145566666664
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.3e-08 Score=90.02 Aligned_cols=202 Identities=17% Similarity=0.186 Sum_probs=103.0
Q ss_pred CcCCcEEecCCccccc---cchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC---CccCchhcCCCCCCC
Q 010381 256 LLNLQTLQMPSSYIDQ---SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP---ISCTPDILGRLPNIQ 329 (512)
Q Consensus 256 l~~L~~L~L~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~---~~~~~~~l~~l~~L~ 329 (512)
++.++.|||.+|.+.. +...+.++|.|+.|+++.|.+...+-.--..+.+|+.+.++++ ..+.-..+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555554432 2223345566666666555543211100012233444444431 122233445555566
Q ss_pred eEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC--CCCCCCCCCcccceeE
Q 010381 330 TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE--DPMPTLEKLPYVQVLK 407 (512)
Q Consensus 330 ~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~ 407 (512)
.|+++.+ +++.+.+..|.+.. | - +.+.+|+...|.... .....-.-+|++..+.
T Consensus 150 elHmS~N----------------~~rq~n~Dd~c~e~----~---s-~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 150 ELHMSDN----------------SLRQLNLDDNCIED----W---S-TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred hhhhccc----------------hhhhhccccccccc----c---c-hhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 6666555 33344444333221 1 1 344555555543210 0011113467777778
Q ss_pred EEcccccCceeeeeCCCCCccccEEEecCCCCcceee--eCCCCccccceeeecCCcccCCCCc------ccCCCCCCcE
Q 010381 408 LKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT--MGAGAMPKLESLIVDPCAYLRKLPE------ELWCIQSLRK 479 (512)
Q Consensus 408 l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~lp~------~~~~l~~L~~ 479 (512)
+..|.+....-... ...+|.+-.|.|+. +++.+|. ..+..||.|..|.+.++|....+-- .++.+++++.
T Consensus 206 v~e~PlK~~s~ek~-se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 206 VCEGPLKTESSEKG-SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eecCcccchhhccc-CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 87777665443333 56677777777777 4566553 4567888888888888886554321 3466777777
Q ss_pred EEcc
Q 010381 480 LDLH 483 (512)
Q Consensus 480 L~l~ 483 (512)
|+=+
T Consensus 284 LNGs 287 (418)
T KOG2982|consen 284 LNGS 287 (418)
T ss_pred ecCc
Confidence 6644
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-07 Score=64.87 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=47.8
Q ss_pred cccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccch-hhhccccCceeecCCccc
Q 010381 234 FLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 234 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 292 (512)
++|++|++++|+++.+|. .+.++++|++|++++|.+..+++ .+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468888888888887775 56788888888888888888775 567888888888888764
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.1e-07 Score=93.88 Aligned_cols=106 Identities=17% Similarity=0.282 Sum_probs=91.3
Q ss_pred CeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCccccCeeeecCCCCc-ccChhhhcCcCCc
Q 010381 184 YLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQ 260 (512)
Q Consensus 184 ~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~ 260 (512)
.++.|.+.++.... .+ ..+ ..+++|+.|+|++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|+
T Consensus 419 ~v~~L~L~~n~L~g----~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRG----FIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccc----cCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 47888888887753 55 556 89999999999999998 89999999999999999999998 8999999999999
Q ss_pred EEecCCccc-cccchhhhcc-ccCceeecCCcccCC
Q 010381 261 TLQMPSSYI-DQSPEDIWMM-QKLMHLNFGSITLPA 294 (512)
Q Consensus 261 ~L~L~~~~~-~~lp~~i~~l-~~L~~L~l~~~~~~~ 294 (512)
+|+|++|.+ ..+|..++.+ .++..+++.+|....
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999966 5889888753 577889988886543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.8e-08 Score=97.77 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=68.4
Q ss_pred CCCCeeEEEEecCCcchhhhcchhH-HhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCEN-FCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 259 (512)
.+.+++.|.+.++.+. .+.. + ..+++|++|++++|.|+.+. .+..++.|+.|++++|.|+.+. .+..+.+|
T Consensus 93 ~~~~l~~l~l~~n~i~-----~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-----KIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSL 164 (414)
T ss_pred cccceeeeeccccchh-----hcccch-hhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhh
Confidence 5666777777777665 3333 3 66777777777777776553 3555666777777777777654 34446777
Q ss_pred cEEecCCccccccchh-hhccccCceeecCCcccC
Q 010381 260 QTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 260 ~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~ 293 (512)
+.+++.+|.+..+... ...+.+++.+++.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 7777777766666543 466777777777776653
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-06 Score=55.56 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=20.9
Q ss_pred ccCeeeecCCCCcccChhhhcCcCCcEEecCCcccccc
Q 010381 235 LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS 272 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l 272 (512)
+|++|++++|+|+++|..+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45556666666655555555566666666666555544
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.3e-08 Score=97.68 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=86.0
Q ss_pred ccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC
Q 010381 235 LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP 314 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~ 314 (512)
.|...+.++|.+..+-.++.-++.|+.|||+.|++...- .+..|++|++||+++|++. .+|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~---------------- 226 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQ---------------- 226 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccc----------------
Confidence 466667777777777777777888888888888887764 6788888888888888874 2221
Q ss_pred CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc-CcCCCCCCccEEEEecccC
Q 010381 315 ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL-SEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l-~~~~lp~~L~~L~L~~~~~ 389 (512)
.-..-..|+.|.+++| ....+ ..+.++.+|+.||+++|-+..-..| -+..+ ..|+.|.|.||.+
T Consensus 227 ------l~~~gc~L~~L~lrnN---~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 227 ------LSMVGCKLQLLNLRNN---ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL 291 (1096)
T ss_pred ------cchhhhhheeeeeccc---HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence 0011123778888887 33333 3456778888888888766432222 33455 7788889988875
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.7e-06 Score=54.93 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=34.5
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccC
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLP 250 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp 250 (512)
++|++|++++|.++.+|..+++|++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4789999999999999888999999999999999998775
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.6e-05 Score=77.92 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=55.5
Q ss_pred hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCC-CCcccChhhhcCcCCcEEecCCc-cccccchhhhcccc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIP-SLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQK 281 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~ 281 (512)
..+ ..+++++.|++++|.++.+|. + -.+|+.|.+++| .++.+|..+. .+|+.|++++| .+..+|..
T Consensus 46 ~r~-~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------ 113 (426)
T PRK15386 46 PQI-EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------ 113 (426)
T ss_pred HHH-HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------
Confidence 445 667889999999998888873 1 236999999875 5667776553 68999999998 78878753
Q ss_pred CceeecCCcc
Q 010381 282 LMHLNFGSIT 291 (512)
Q Consensus 282 L~~L~l~~~~ 291 (512)
|+.|++.++.
T Consensus 114 Le~L~L~~n~ 123 (426)
T PRK15386 114 VRSLEIKGSA 123 (426)
T ss_pred cceEEeCCCC
Confidence 5666665443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.2e-06 Score=88.07 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=95.8
Q ss_pred CceeEEEEEecCCc--cccCCC--CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCcccc
Q 010381 161 ANVKRCFILKDLID--FFPSEY--SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~--~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L 236 (512)
..++++.+.+.... .-+... .+|.|++|.+.+.... ..++..+|.++++|+.||+++++++.+ .+++.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 45677777632211 111122 7999999999998765 234667779999999999999999977 779999999
Q ss_pred CeeeecCCCCcc--cChhhhcCcCCcEEecCCccccccch-------hhhccccCceeecCCcccCC
Q 010381 237 KYLKLNIPSLKC--LPSQLCTLLNLQTLQMPSSYIDQSPE-------DIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 237 ~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~lp~-------~i~~l~~L~~L~l~~~~~~~ 294 (512)
+.|.+.+-.+.. .-..+.+|++|++||++.......+. .-..||+|+.||.+++.+.+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999999877773 22457789999999999884433221 11358999999999887765
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.3e-06 Score=88.68 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=52.6
Q ss_pred CCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC--ccCccccCccccCeeeecCCCCcccChhhhcCcCC
Q 010381 182 DMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNL 259 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 259 (512)
-.+|+.|++.|..... ......+..-+|.|+.|.+++-.+. .+-....++++|+.||+++++++.+ ..+++|++|
T Consensus 121 r~nL~~LdI~G~~~~s--~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS--NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhh--ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 3455556555533221 1122444344556666655554433 2223334455566666666655555 355556666
Q ss_pred cEEecCCccccccc--hhhhccccCceeecCCcc
Q 010381 260 QTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 260 ~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~ 291 (512)
++|.+++-.+..-. ..+.+|++|++||+|...
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 66655554443221 234555555555555443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.4e-07 Score=94.10 Aligned_cols=87 Identities=30% Similarity=0.318 Sum_probs=47.1
Q ss_pred hhcCCCCCCCeEEEeccchhhhhhHHHh-ccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC-CCCCCC
Q 010381 320 DILGRLPNIQTLRISGDLSYYQSRVSKS-LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE-DPMPTL 397 (512)
Q Consensus 320 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~-~~~~~l 397 (512)
+.+..++.|++|++++| ....+|.. ...+ +|..|.+++|.+..|. .+.++ .+|+.|+++.|.+.+ .-...+
T Consensus 203 ~~Lr~l~~LkhLDlsyN---~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~--gie~L-ksL~~LDlsyNll~~hseL~pL 275 (1096)
T KOG1859|consen 203 DNLRRLPKLKHLDLSYN---CLRHVPQLSMVGC-KLQLLNLRNNALTTLR--GIENL-KSLYGLDLSYNLLSEHSELEPL 275 (1096)
T ss_pred HHHHhcccccccccccc---hhccccccchhhh-hheeeeecccHHHhhh--hHHhh-hhhhccchhHhhhhcchhhhHH
Confidence 34556666666666665 23333321 1122 3666666666665554 55566 666666666665533 112233
Q ss_pred CCCcccceeEEEcccc
Q 010381 398 EKLPYVQVLKLKQNSY 413 (512)
Q Consensus 398 ~~l~~L~~L~l~~~~~ 413 (512)
..+..|+.|.|.||.+
T Consensus 276 wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 276 WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHHHHHHHhhcCCcc
Confidence 4455666666666654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.3e-05 Score=73.82 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=40.4
Q ss_pred ccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcc
Q 010381 230 LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~ 291 (512)
+..+.++++|++++|.++.+|. --.+|++|.+++| .+..+|..+. ++|++|++++|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcc
Confidence 3446778888888888887772 1246888888887 6777776552 578888887774
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.1e-05 Score=68.29 Aligned_cols=86 Identities=17% Similarity=0.105 Sum_probs=40.1
Q ss_pred CCccEEEEecccCCCCCCC----CCCCCcccceeEEEcccccCceeeee----CCCCCccccEEEecCCCCcce-e----
Q 010381 377 PSLTHLSLSNTELKEDPMP----TLEKLPYVQVLKLKQNSYLGRKLACV----GSGGFPELKVLHLKSMYWLDE-W---- 443 (512)
Q Consensus 377 ~~L~~L~L~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~L~~~~~l~~-l---- 443 (512)
.+|+.|+|..|.++..... .+...+.|++|.+.+|-++....... .-..+|+|..|-..++..-.. +
T Consensus 214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~ 293 (388)
T COG5238 214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDIS 293 (388)
T ss_pred CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeec
Confidence 5555555555544321111 12233446666666555443221100 012246666666655322111 1
Q ss_pred -e-eCCCCccccceeeecCCc
Q 010381 444 -T-MGAGAMPKLESLIVDPCA 462 (512)
Q Consensus 444 -~-~~~~~l~~L~~L~l~~c~ 462 (512)
+ ...+++|-|..|.+.+|.
T Consensus 294 l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 294 LNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhhhhhcccHHHHHHHHccCc
Confidence 1 123567788888887776
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.6e-06 Score=66.04 Aligned_cols=71 Identities=23% Similarity=0.362 Sum_probs=37.3
Q ss_pred hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccch
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPE 274 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~ 274 (512)
+.|..+++.++.|++++|.++.+|..+..++.||.|+++.|.+...|.-+..|.+|-.|+.-++...++|.
T Consensus 70 ~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 70 KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 34434444555555555555555555555555555555555555555555555555555555554444443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=2.2e-05 Score=63.70 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=71.2
Q ss_pred cCCCeeEEEEecCCcCCccCccccC-ccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLEN-LFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLN 286 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~-l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 286 (512)
.....|...++++|.+.++|+.|.. .+.+..|++++|.|.++|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 6677888889999998888877654 457888999999999999888889999999999998888888888888888888
Q ss_pred cCCccc
Q 010381 287 FGSITL 292 (512)
Q Consensus 287 l~~~~~ 292 (512)
..+|..
T Consensus 130 s~~na~ 135 (177)
T KOG4579|consen 130 SPENAR 135 (177)
T ss_pred CCCCcc
Confidence 877665
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=1.7e-05 Score=82.32 Aligned_cols=236 Identities=20% Similarity=0.159 Sum_probs=111.5
Q ss_pred cCCCeeEEEEecCCc-CCc--cCccccCccccCeeeecCC--CCcc----cChhhhcCcCCcEEecCCcc-ccccc-hhh
Q 010381 208 KKFKYLRVLDLGSAV-LDQ--FPPGLENLFLLKYLKLNIP--SLKC----LPSQLCTLLNLQTLQMPSSY-IDQSP-EDI 276 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~-l~~--lp~~l~~l~~L~~L~l~~~--~i~~----lp~~~~~l~~L~~L~L~~~~-~~~lp-~~i 276 (512)
..++.|+.|.+.++. +.. +-.....+++|+.|+++++ .+.. .......+.+|+.|+++++. ++..- ..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 445666666666553 332 2233445556666666542 1111 11123344566666666663 33221 112
Q ss_pred h-ccccCceeecCCcc-cCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCC
Q 010381 277 W-MMQKLMHLNFGSIT-LPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKL 354 (512)
Q Consensus 277 ~-~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L 354 (512)
. .+++|++|.+.+|. ++. ..+......+++|++|++++|.......+.....++++|
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~---------------------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l 323 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD---------------------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNL 323 (482)
T ss_pred HhhCCCcceEccCCCCccch---------------------hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcch
Confidence 2 25566666544443 110 333444566778888888888533344455555667777
Q ss_pred cEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC---CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccE
Q 010381 355 EWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE---DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431 (512)
Q Consensus 355 ~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 431 (512)
+.|.+.. ...+ +.++.+.+.++.... ........+++++.+.+..+.......... ..+++.|.
T Consensus 324 ~~l~~~~----------~~~c-~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-l~gc~~l~- 390 (482)
T KOG1947|consen 324 RELKLLS----------LNGC-PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELS-LRGCPNLT- 390 (482)
T ss_pred hhhhhhh----------cCCC-ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHH-hcCCcccc-
Confidence 7765543 2223 455555555543211 111224567777777777665322221111 33444441
Q ss_pred EEecCCCCcceeeeCCCCccccceeeecCCcccCCCCccc-C-CCCCCcEEEccCCh
Q 010381 432 LHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEEL-W-CIQSLRKLDLHWPQ 486 (512)
Q Consensus 432 L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~-~l~~L~~L~l~~~~ 486 (512)
.. +.........++.|++..|...+.--... . .+..+..+++.+|+
T Consensus 391 ~~---------l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 391 ES---------LELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred hH---------HHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 11 11111222226666666666444211100 1 15556666666665
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=65.89 Aligned_cols=246 Identities=17% Similarity=0.128 Sum_probs=133.7
Q ss_pred hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCC---Cc-ccCh-------hhhcCcCCcEEecCCc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPS---LK-CLPS-------QLCTLLNLQTLQMPSS 267 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~---i~-~lp~-------~~~~l~~L~~L~L~~~ 267 (512)
..+ .-+..+..++||||.|. .+...+.+-.+|+.-+++.-. .. ++|. .+-+|++|+..+|+.|
T Consensus 24 eel-~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EEL-EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHH-HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 455 45788888999998876 334445556677777776521 11 3333 3445677777777776
Q ss_pred cc-cccc----hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhh
Q 010381 268 YI-DQSP----EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQS 342 (512)
Q Consensus 268 ~~-~~lp----~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 342 (512)
.+ .+.| +.|++-..|.||.+++|.+. .+.. +.+...+.++
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG-----------------~rigkal~~l----------------- 147 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAG-----------------GRIGKALFHL----------------- 147 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccch-----------------hHHHHHHHHH-----------------
Confidence 33 2222 33556666667766666542 1110 0000000000
Q ss_pred hHHHhccCCCCCcEEEeccCCCCCCccc----CcCCCCCCccEEEEecccCCCCCCC-----CCCCCcccceeEEEcccc
Q 010381 343 RVSKSLCKLQKLEWLKLVNESKPSRMVL----SEYQFPPSLTHLSLSNTELKEDPMP-----TLEKLPYVQVLKLKQNSY 413 (512)
Q Consensus 343 ~l~~~l~~l~~L~~L~l~~~~~p~L~~l----~~~~lp~~L~~L~L~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~ 413 (512)
..-....+.+.|++..+..|++-+-..- .+..- .+|+.+.+..|.|...... .+..+.+|+.|++++|.+
T Consensus 148 a~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 148 AYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH-ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred HHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 0011233445666666665554210000 11222 5788888888877543222 234578999999999987
Q ss_pred cCceeeee--CCCCCccccEEEecCCCCcce----ee--eCCCCccccceeeecCCcccCC------CCcc-cCCCCCCc
Q 010381 414 LGRKLACV--GSGGFPELKVLHLKSMYWLDE----WT--MGAGAMPKLESLIVDPCAYLRK------LPEE-LWCIQSLR 478 (512)
Q Consensus 414 ~~~~~~~~--~~~~~~~L~~L~L~~~~~l~~----l~--~~~~~l~~L~~L~l~~c~~l~~------lp~~-~~~l~~L~ 478 (512)
+....... .....+.|+.|.+.+|-.-.. +- +.....|+|..|...+|..-.. +|.. -.++|-|.
T Consensus 227 t~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~ 306 (388)
T COG5238 227 TLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLV 306 (388)
T ss_pred hhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHH
Confidence 64321110 145567899999998743221 11 1234578899988888764322 2221 13566677
Q ss_pred EEEccCCh
Q 010381 479 KLDLHWPQ 486 (512)
Q Consensus 479 ~L~l~~~~ 486 (512)
.+.+.||.
T Consensus 307 ~le~ngNr 314 (388)
T COG5238 307 DLERNGNR 314 (388)
T ss_pred HHHHccCc
Confidence 77777664
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00038 Score=60.54 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=79.6
Q ss_pred CcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEE
Q 010381 354 LEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLH 433 (512)
Q Consensus 354 L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 433 (512)
=+.+++.+..+|..+.+.. -. .....++|++|.+.. .+.|..++.|..|.+.+|.++...+.. ..-+|+|..|.
T Consensus 21 e~e~~LR~lkip~ienlg~-~~-d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGA-TL-DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccchhhccc-cc-cccceecccccchhh--cccCCCccccceEEecCCcceeeccch--hhhccccceEE
Confidence 3445555544554332210 11 355667777776643 345667777888888877777665554 35567888888
Q ss_pred ecCCCCcceee--eCCCCccccceeeecCCcccCCC---CcccCCCCCCcEEEccCChHH
Q 010381 434 LKSMYWLDEWT--MGAGAMPKLESLIVDPCAYLRKL---PEELWCIQSLRKLDLHWPQTE 488 (512)
Q Consensus 434 L~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l---p~~~~~l~~L~~L~l~~~~~~ 488 (512)
+.+ +.+.++. ..+..||+|++|.+-+|+....- -..+..+|+|+.||..+-...
T Consensus 95 Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 95 LTN-NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred ecC-cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 887 3455442 34567888888888888754421 124567889999998887643
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00046 Score=60.08 Aligned_cols=59 Identities=25% Similarity=0.204 Sum_probs=25.2
Q ss_pred CCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecC
Q 010381 377 PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKS 436 (512)
Q Consensus 377 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (512)
+.|..|.+.+|.++...+..-.-+|+|..|.+.+|.+..-.-.-. ...+|.|++|.+-+
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLG 122 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecC
Confidence 445555555555444333333334445555555444322111111 33445555555444
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=6.6e-05 Score=68.29 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=75.1
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh--hhhcCcC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS--QLCTLLN 258 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~~~~l~~ 258 (512)
++.+++.|++.++...+ -.++.+|+.|.||.|+-|.|+.+. .+..|++|+.|.|..|.|.++-. .+.++++
T Consensus 17 dl~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 35567778888887763 455689999999999999998763 47889999999999998885543 3668899
Q ss_pred CcEEecCCc-cccccch-----hhhccccCceee
Q 010381 259 LQTLQMPSS-YIDQSPE-----DIWMMQKLMHLN 286 (512)
Q Consensus 259 L~~L~L~~~-~~~~lp~-----~i~~l~~L~~L~ 286 (512)
|++|-|..| ...+-+. .+..||+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999887 4433332 356788888885
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0001 Score=76.49 Aligned_cols=217 Identities=22% Similarity=0.175 Sum_probs=108.3
Q ss_pred CccccCeeeecCC-CCcc--cChhhhcCcCCcEEecCCc--cccccc----hhhhccccCceeecCCcccCCCCCCCCCC
Q 010381 232 NLFLLKYLKLNIP-SLKC--LPSQLCTLLNLQTLQMPSS--YIDQSP----EDIWMMQKLMHLNFGSITLPAPPTNYSSS 302 (512)
Q Consensus 232 ~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~L~~~--~~~~lp----~~i~~l~~L~~L~l~~~~~~~~~p~~~~~ 302 (512)
.++.|+.|.+.++ .+.. +-.....+++|+.|+++++ .....+ .....+++|++|+++++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-------- 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-------- 257 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--------
Confidence 3567777777665 3443 3344556777777777763 222211 223345666677666655210
Q ss_pred CCCCCeeecCCCCccCchhc-CCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCC---CCcccCcCCCCCC
Q 010381 303 LKNLIFVSALHPISCTPDIL-GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKP---SRMVLSEYQFPPS 378 (512)
Q Consensus 303 l~~L~~l~l~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p---~L~~l~~~~lp~~ 378 (512)
......+ ..+++|+.|.+.+|.......+......+++|++|++++...- .+.. ....+ ++
T Consensus 258 -------------d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c-~~ 322 (482)
T KOG1947|consen 258 -------------DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA-LLKNC-PN 322 (482)
T ss_pred -------------chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH-HHHhC-cc
Confidence 1122222 2377888888777742233445555666777888888763221 0110 12223 44
Q ss_pred ccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC--ceeeeeCCCCCccccEEEecCCCCcceeeeCCCCcccccee
Q 010381 379 LTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG--RKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESL 456 (512)
Q Consensus 379 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 456 (512)
++.|.+.... .++.++.+.+.++.... ...... ...+++++.+.+..|. ..... ..+
T Consensus 323 l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~-~~~~~~l~~~~l~~~~-~~~~~---------~~~ 381 (482)
T KOG1947|consen 323 LRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELI-LRSCPKLTDLSLSYCG-ISDLG---------LEL 381 (482)
T ss_pred hhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHH-HhcCCCcchhhhhhhh-ccCcc---------hHH
Confidence 4444333222 14445555554332211 122222 4566777777776655 22211 044
Q ss_pred eecCCccc-CCCCcccCCCCCCcEEEccCChHHHHHH
Q 010381 457 IVDPCAYL-RKLPEELWCIQSLRKLDLHWPQTELRQR 492 (512)
Q Consensus 457 ~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 492 (512)
.+.+|+.+ ..+........+++.|.+..|.......
T Consensus 382 ~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 382 SLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred HhcCCcccchHHHHHhccCCccceEecccCccccccc
Confidence 55556555 2222222334448899999987444333
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.00083 Score=60.98 Aligned_cols=81 Identities=22% Similarity=0.180 Sum_probs=41.5
Q ss_pred cCCCeeEEEEecCC--cCC-ccCccccCccccCeeeecCCCCccc--ChhhhcCcCCcEEecCCccccccc----hhhhc
Q 010381 208 KKFKYLRVLDLGSA--VLD-QFPPGLENLFLLKYLKLNIPSLKCL--PSQLCTLLNLQTLQMPSSYIDQSP----EDIWM 278 (512)
Q Consensus 208 ~~~~~L~~L~l~~~--~l~-~lp~~l~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~L~~~~~~~lp----~~i~~ 278 (512)
..+++|+.|.++.| .+. .++-....+++|++|++++|+|..+ -..+..+.+|..|++.+|..+.+- ..+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 55566666666666 333 3433344456666666666655521 113445566666666666333332 12334
Q ss_pred cccCceeecC
Q 010381 279 MQKLMHLNFG 288 (512)
Q Consensus 279 l~~L~~L~l~ 288 (512)
+++|++||-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 5555555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.00016 Score=65.89 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=65.9
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccc--hhhhccccCcee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSP--EDIWMMQKLMHL 285 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L 285 (512)
+.+.+.+-|++-||.+..+ ....+++.|+.|.|+-|+|+.+. .+..|++|++|.|+.|.|..+- ..+.++++|+.|
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4566777888888888754 23567889999999999999885 6788999999999999777664 346788888888
Q ss_pred ecCCcccCC
Q 010381 286 NFGSITLPA 294 (512)
Q Consensus 286 ~l~~~~~~~ 294 (512)
-|..|.-.+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 887766544
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0034 Score=57.06 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=53.7
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCC--CCc-ccChhhhcCcCCcEEecCCccccccc--hhhhccccC
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIP--SLK-CLPSQLCTLLNLQTLQMPSSYIDQSP--EDIWMMQKL 282 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L 282 (512)
..+..|..|++.++.++.+ ..+-.+++|++|.++.| .+. .++....++++|++|++++|.+..+. ..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445555555555554422 22445778888888888 555 66656666788888888888554321 225667777
Q ss_pred ceeecCCcccC
Q 010381 283 MHLNFGSITLP 293 (512)
Q Consensus 283 ~~L~l~~~~~~ 293 (512)
..|++.+|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 78887777654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0047 Score=33.45 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=6.3
Q ss_pred cCeeeecCCCCcccCh
Q 010381 236 LKYLKLNIPSLKCLPS 251 (512)
Q Consensus 236 L~~L~l~~~~i~~lp~ 251 (512)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3344444443333333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.006 Score=33.05 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=13.5
Q ss_pred CCcEEecCCccccccchhhhc
Q 010381 258 NLQTLQMPSSYIDQSPEDIWM 278 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~i~~ 278 (512)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777766666665543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.0015 Score=58.09 Aligned_cols=89 Identities=19% Similarity=0.120 Sum_probs=73.5
Q ss_pred hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLM 283 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~ 283 (512)
.++ ..+...++||++.+.+..+-..++.+..|..|+++.+.+..+|..++.+..+..+++..|+....|.+.++.+.++
T Consensus 36 ~ei-~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REI-ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhh-hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 555 6778888888888887766677777888888888888888888888888888888888888888888888888888
Q ss_pred eeecCCcccC
Q 010381 284 HLNFGSITLP 293 (512)
Q Consensus 284 ~L~l~~~~~~ 293 (512)
++++.++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888777654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.002 Score=56.20 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=46.5
Q ss_pred CccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc-eeeeeCCCCCccccEEEecCCCCccee-eeCCCCccccce
Q 010381 378 SLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR-KLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAMPKLES 455 (512)
Q Consensus 378 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~ 455 (512)
.++.++-+++.+.....+.+.+++.++.|.+.+|...++ .+... .+..++|+.|+|++|+.+++- -..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 455566666665555555566666666666665553322 12221 234566666666666666522 123455666666
Q ss_pred eeecCCcc
Q 010381 456 LIVDPCAY 463 (512)
Q Consensus 456 L~l~~c~~ 463 (512)
|.+++-+.
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 66665443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.004 Score=54.40 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=63.7
Q ss_pred cceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee--eCCCCccccceeeecCCcccCCCC-cccCCCCCCcE
Q 010381 403 VQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT--MGAGAMPKLESLIVDPCAYLRKLP-EELWCIQSLRK 479 (512)
Q Consensus 403 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~ 479 (512)
++.++-+++.+..+.+.. +..+++++.|.+.+|..+..+. ..-+-.|+|+.|+|++|+.+++-. ..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~--L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH--LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHH--HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 566777766666666554 5778999999999999998663 223467999999999999888632 24678999999
Q ss_pred EEccCCh
Q 010381 480 LDLHWPQ 486 (512)
Q Consensus 480 L~l~~~~ 486 (512)
|.+.+.|
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 9999976
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.15 Score=41.94 Aligned_cols=78 Identities=10% Similarity=0.204 Sum_probs=27.0
Q ss_pred cCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchh-hhccccCce
Q 010381 208 KKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMH 284 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~ 284 (512)
..+++|+.+.+.. .++.++ ..|..+.+|+.+.+.++ +..++. .+.++.+|+.+.+.+ .+..++.. +..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 4445555555543 233332 23444445555555442 333322 233444455555543 23223222 333555555
Q ss_pred eecC
Q 010381 285 LNFG 288 (512)
Q Consensus 285 L~l~ 288 (512)
+++.
T Consensus 86 i~~~ 89 (129)
T PF13306_consen 86 IDIP 89 (129)
T ss_dssp EEET
T ss_pred cccC
Confidence 5443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.21 Score=41.04 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=48.0
Q ss_pred cccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCCC
Q 010381 229 GLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL 306 (512)
Q Consensus 229 ~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 306 (512)
.|.++.+|+.+.+.. .++.++.. +..+.+|+.+.+..+ +..++. .+.++++|+.+.+.. .........+.++++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 467777888888875 46655443 667778888888775 555554 356676788888765 2221222345556666
Q ss_pred CeeecCCCCccCc-hhcCCCCCCCeEEEe
Q 010381 307 IFVSALHPISCTP-DILGRLPNIQTLRIS 334 (512)
Q Consensus 307 ~~l~l~~~~~~~~-~~l~~l~~L~~L~l~ 334 (512)
+.+.+...+..+. ..+.++ +|+.+.+.
T Consensus 84 ~~i~~~~~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSNITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT-BEEHTTTTTT--T--EEE-T
T ss_pred cccccCccccEEchhhhcCC-CceEEEEC
Confidence 6666653212122 223333 55555544
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.044 Score=27.46 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=4.4
Q ss_pred cCeeeecCCCCcc
Q 010381 236 LKYLKLNIPSLKC 248 (512)
Q Consensus 236 L~~L~l~~~~i~~ 248 (512)
|+.|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.05 Score=27.27 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=6.3
Q ss_pred CCcEEecCCccccccc
Q 010381 258 NLQTLQMPSSYIDQSP 273 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp 273 (512)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.017 Score=51.59 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=73.9
Q ss_pred ccC-ccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCC
Q 010381 225 QFP-PGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSL 303 (512)
Q Consensus 225 ~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l 303 (512)
.+| ..+........|+++.+++..+-..++.++.|.-||++.+.+.-+|..++.+..++++++..|+.. ..|.+.+.+
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence 444 346778889999999999888888888899999999999999999999999999999999888763 677777777
Q ss_pred CCCCeeecCCC
Q 010381 304 KNLIFVSALHP 314 (512)
Q Consensus 304 ~~L~~l~l~~~ 314 (512)
+.++.++..++
T Consensus 111 ~~~k~~e~k~~ 121 (326)
T KOG0473|consen 111 PHPKKNEQKKT 121 (326)
T ss_pred CCcchhhhccC
Confidence 77777776653
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.33 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=9.7
Q ss_pred cCCcEEecCCccccccchh
Q 010381 257 LNLQTLQMPSSYIDQSPED 275 (512)
Q Consensus 257 ~~L~~L~L~~~~~~~lp~~ 275 (512)
++|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.33 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=9.7
Q ss_pred cCCcEEecCCccccccchh
Q 010381 257 LNLQTLQMPSSYIDQSPED 275 (512)
Q Consensus 257 ~~L~~L~L~~~~~~~lp~~ 275 (512)
++|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.36 Score=27.09 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=15.6
Q ss_pred ccccCeeeecCCCCcccChhh
Q 010381 233 LFLLKYLKLNIPSLKCLPSQL 253 (512)
Q Consensus 233 l~~L~~L~l~~~~i~~lp~~~ 253 (512)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.36 Score=27.09 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=15.6
Q ss_pred ccccCeeeecCCCCcccChhh
Q 010381 233 LFLLKYLKLNIPSLKCLPSQL 253 (512)
Q Consensus 233 l~~L~~L~l~~~~i~~lp~~~ 253 (512)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777654
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.45 E-value=0.01 Score=60.70 Aligned_cols=164 Identities=21% Similarity=0.104 Sum_probs=76.3
Q ss_pred cCCC-CCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCCCccc----CcCCCCCCccEEEEecccCCCCCC
Q 010381 322 LGRL-PNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL----SEYQFPPSLTHLSLSNTELKEDPM 394 (512)
Q Consensus 322 l~~l-~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l----~~~~lp~~L~~L~L~~~~~~~~~~ 394 (512)
+..+ ..++++++..|. ......+...+..++.++.+.++.|.+..-... ..... ..+..+.+.++......+
T Consensus 257 l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~ 335 (478)
T KOG4308|consen 257 LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERK-TPLLHLVLGGTGKGTRGG 335 (478)
T ss_pred hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhc-ccchhhhccccCccchhH
Confidence 3344 566777777664 234445666666777777777777665421100 11122 344444444433211111
Q ss_pred CC-C----CCCcccceeEEEcccccCcee---eeeCCCCCccccEEEecCCCCcc----eeeeCCCCccccceeeecCCc
Q 010381 395 PT-L----EKLPYVQVLKLKQNSYLGRKL---ACVGSGGFPELKVLHLKSMYWLD----EWTMGAGAMPKLESLIVDPCA 462 (512)
Q Consensus 395 ~~-l----~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~c~ 462 (512)
.. + ..-..+.....+++...+... .......-+.+..+++..+.... .++......+.++.++++.|.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~ 415 (478)
T KOG4308|consen 336 TSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNS 415 (478)
T ss_pred HHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCc
Confidence 11 0 000111112222222111110 00001112234555554432222 344456678889999998876
Q ss_pred ccCCCCcc-----cCCCCCCcEEEccCChH
Q 010381 463 YLRKLPEE-----LWCIQSLRKLDLHWPQT 487 (512)
Q Consensus 463 ~l~~lp~~-----~~~l~~L~~L~l~~~~~ 487 (512)
.-.+-+.. -.+. .++.+.++.++.
T Consensus 416 ~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~ 444 (478)
T KOG4308|consen 416 LHDEGAEVLTEQLSRNG-SLKALRLSRNPI 444 (478)
T ss_pred cchhhHHHHHHhhhhcc-cchhhhhccChh
Confidence 54433221 1345 899999999884
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.06 E-value=0.023 Score=58.05 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=27.2
Q ss_pred ccCchhcCCCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCC
Q 010381 316 SCTPDILGRLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNES 363 (512)
Q Consensus 316 ~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~ 363 (512)
......+..+++++.+.++.+. ......+...+.....+..+.+.++.
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 3345556677788888888775 22222333444455566666666543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 53/294 (18%), Positives = 100/294 (34%), Gaps = 46/294 (15%)
Query: 204 ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQL--CTLLNLQT 261
+ + N + +LK L T
Sbjct: 26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVA 85
Query: 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDI 321
L++ S + Q P+ + + L H+ ++ L L PD
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHMTI-----------DAAGLMEL------------PDT 122
Query: 322 LGRLPNIQTLRISGDLSYYQ-SRVSKSLCKLQKLEWLKLVNESK----PSRM----VLSE 372
+ + ++TL L+ + S+ L +L L + + P + E
Sbjct: 123 MQQFAGLETL----TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 373 YQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGS--GGFPELK 430
+Q +L L L T ++ P ++ L ++ LK++ + L+ +G P+L+
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNS-----PLSALGPAIHHLPKLE 232
Query: 431 VLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHW 484
L L+ L + G L+ LI+ C+ L LP ++ + L KLDL
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 54/276 (19%), Positives = 93/276 (33%), Gaps = 54/276 (19%)
Query: 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS 272
L+L S L QFP L L+++ ++ L LP + L+TL + + +
Sbjct: 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL 142
Query: 273 PEDIWMMQKLMHLNFGS----ITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNI 328
P I + +L L+ + LP L + L N+
Sbjct: 143 PASIASLNRLRELSIRACPELTELP-------EPLASTDA----------SGEHQGLVNL 185
Query: 329 QTLRISGDLSYYQ-SRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNT 387
Q+L L + + S+ LQ +L L + N+
Sbjct: 186 QSL----RLEWTGIRSLPASIANLQ-------------------------NLKSLKIRNS 216
Query: 388 ELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA 447
L P + LP ++ L L+ + L G LK L LK L +
Sbjct: 217 PLSALG-PAIHHLPKLEELDLRGCTALRNYPPIFGG--RAPLKRLILKDCSNLLTLPLDI 273
Query: 448 GAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483
+ +LE L + C L +LP + + + + +
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 25/150 (16%)
Query: 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPS-SYIDQ 271
L+ L L + P + NL LK LK+ L L + L L+ L + + +
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 272 SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTL 331
P L L S+L L P + RL ++ L
Sbjct: 245 YPPIFGGRAPLKRLIL----------KDCSNLLTL------------PLDIHRLTQLEKL 282
Query: 332 RISGDLSYYQSRVSKSLCKLQKLEWLKLVN 361
+ G ++ SR+ + +L + +
Sbjct: 283 DLRGCVNL--SRLPSLIAQLPANCIILVPP 310
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 3e-15
Identities = 62/305 (20%), Positives = 101/305 (33%), Gaps = 64/305 (20%)
Query: 13 LIGGPLIRLKHEAWQFFILHYGSMPLENYLQGETIPTILSRICSVLELPFHLKICCIYLC 72
+I IR W + H L TI+ +VLE P + L
Sbjct: 332 IIAE-SIRDGLATWDNW-KHVNCDKLT---------TIIESSLNVLE-PAEYRKMFDRLS 379
Query: 73 VFPPSIEISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYF 132
VFPPS I T L +W + + +L + ++ K+ TI
Sbjct: 380 VFPPSAHIPTILLSLIWFDV------IKSDVMVVVNKLHKYSLVE--KQPKESTI---SI 428
Query: 133 PSIVDTSLFLVAEKTEFVWSPDMVEEPMANVKRCFILKDLIDFFPSEYSDMYLQSFLN-H 191
PSI + + +V+ N+ + F D D P Y D Y S + H
Sbjct: 429 PSIYLELKVKLENEYAL--HRSIVDH--YNIPKTF---DSDDLIP-PYLDQYFYSHIGHH 480
Query: 192 SSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS 251
+ R+ F F LD FL + ++ + + S
Sbjct: 481 LKNIEHPERMT--LFRMVF-----LDFR--------------FLEQKIRHDSTAWNASGS 519
Query: 252 QLCTLLNLQTLQMPSSYI-DQSPEDIWMMQKLMHLNFGSITLPAPPTN-YSSSLKNLIFV 309
L TL L+ + YI D P+ ++ ++ F LP N S +L+ +
Sbjct: 520 ILNTLQQLKFYK---PYICDNDPKYERLVNAILD--F----LPKIEENLICSKYTDLLRI 570
Query: 310 SALHP 314
+ +
Sbjct: 571 ALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 1e-08
Identities = 80/516 (15%), Positives = 148/516 (28%), Gaps = 181/516 (35%)
Query: 76 PSIE----ISTRQLYQLW-EAEGFIPYN-----SEETAEHHLKELIRRGFIQVSKRRAGG 125
PS+ I R +L+ + + F YN L EL + + G
Sbjct: 105 PSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLG 160
Query: 126 TIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPMA------NVKRCFILKDLIDFFPSE 179
+ K+ + + V V+ M N+K C + +++
Sbjct: 161 SGKTW-----------VALD----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--- 202
Query: 180 YSDMYLQSFLNHSSESDRLARI-----DCENFCKKF----KYLRVL-------------- 216
+ Q N +S SD + I + ++ Y L
Sbjct: 203 -QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 217 -DLGSAVL----------------------DQFPPGL---ENL-FLLKYLKLNIPSLKCL 249
+L +L D L E LLKYL + L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---RPQDL 318
Query: 250 PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFV 309
P ++ T N + L + + I W H+N +T T SSL L
Sbjct: 319 PREVLTT-NPRRLSIIAESIRDGL-ATW--DNWKHVNCDKLT-----TIIESSLNVL--- 366
Query: 310 SALHPISCTPDILGRLPNIQTLRISGDLSYYQSRV---SKSLCKLQKLEWLKLVNESKPS 366
P ++ + LS + + L + W ++
Sbjct: 367 --------EPAEYRKMFD--------RLSVFPPSAHIPTILLSLI----WFDVIKSD--V 404
Query: 367 RMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF 426
+V+++ L SL +++ P + +P + L+LK
Sbjct: 405 MVVVNK------LHKYSL----VEKQPKESTISIPSIY-LELKVKL-------------- 439
Query: 427 PELKVLH--LKSMYWL----DEWTMGAGAMPKLESLIVDPCAY-LRKL-PEELWCIQSLR 478
LH + Y + D + P L+ + L+ + E + +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIP---PYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 479 KLDLHWPQTELR----------------QRLRTFKD 498
LD + + ++R Q+L+ +K
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 9e-07
Identities = 64/450 (14%), Positives = 122/450 (27%), Gaps = 143/450 (31%)
Query: 154 DMVEEPMANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARI-DC-----ENFC 207
D++ F KD+ D S S + + R+ E
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 208 KKF-------KY------LRVLDLG-SAVLDQFPPGLENLF--LLKYLKLNIPSLKCLPS 251
+KF Y ++ S + + + L+ + K N+ L+
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-L 138
Query: 252 QLCT-LLNLQTLQMPSSYI--------------------------------------DQS 272
+L LL L+ P+ + S
Sbjct: 139 KLRQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 273 PEDIW-MMQKLMH--------LNFGSITLPAPPTNYSSSLKNLIFVSALHPIS------- 316
PE + M+QKL++ + S + + + L+ L S +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNV 253
Query: 317 CTPDILGRLPNI--QTLRISGDLS-------YYQSRVS-----KSLCKLQKLE----WLK 358
N+ + L + + +S +L + +L
Sbjct: 254 QNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 359 LVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLK--------- 409
+ P ++ + + LS+ +++ T + +V KL
Sbjct: 313 CRPQDLPREVLTT------NPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESSLNV 365
Query: 410 QNSYLGRK----LACVGSGGFPE-----LKVLHLKSMYWLDEWTMGAGA-MPKLE--SLI 457
RK L+ FP +L S+ W D + KL SL+
Sbjct: 366 LEPAEYRKMFDRLSV-----FPPSAHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 458 V-DPCAYLRKLPE---ELWCIQSLRKLDLH 483
P +P EL ++ + LH
Sbjct: 418 EKQPKESTISIPSIYLEL-KVKLENEYALH 446
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Query: 12 VLIGGPLIRLKHEAWQFFILHYGS-----MPLENYLQGETIPTILSRICSVLELPFHLKI 66
LIG L+R W++++ + + + E + +S SV L +K
Sbjct: 325 SLIGA-LLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMS--ISVEMLREDIKD 381
Query: 67 CCIYLCVFPPSIEISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGT 126
L + +++ T+ L LW+ E E E L+E + + + + G
Sbjct: 382 YYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GK 431
Query: 127 IKSC 130
Sbjct: 432 SFRY 435
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 27/217 (12%)
Query: 12 VLIGGPLIRLKHEAWQFFILHYGSMPLEN-----YLQGETIPTILSRICSVLELPFHLKI 66
++ E S L +++ L R V L +
Sbjct: 334 MMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR--CVEVLSDEDRS 391
Query: 67 CCIYLCVFPPSIEISTRQLYQLWEAEGFIPYN--SEETAEHHLKELIRRGFIQVSKRRAG 124
+ V PP ++I + + + ++ LK L +RG + KR
Sbjct: 392 ALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPV 451
Query: 125 GT----------IKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEP--MANVKRCFILKDL 172
T +K + + ++ ++ + + ++ + + + F
Sbjct: 452 LTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSA 511
Query: 173 IDFFPSEYSDM------YLQSFLNHSSESDRLARIDC 203
+ +P + + + H D L C
Sbjct: 512 SEMYPKTTEETVIRPEDFPKFMQLHQKFYDSLKNFAC 548
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 46/263 (17%), Positives = 85/263 (32%), Gaps = 26/263 (9%)
Query: 184 YLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLF----LLKYL 239
+ L L + D + L + + A LD + + +LF +
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNY 299
L +++ + Q L++ + Q P ++ L L F S +
Sbjct: 288 SLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE- 343
Query: 300 SSSLKNLIFVS----ALHPISCTPDILGRLPNIQTLRISGDLSY-YQSRVSKSLCKLQKL 354
L +L F+ L C +++ L DLS+ +S + L++L
Sbjct: 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL----DLSFNGVITMSSNFLGLEQL 398
Query: 355 EWLKLVN---ESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411
E L + + V +L +L +S+T + L ++VLK+ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVF---LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 412 SYLGRKLACVGSGGFPELKVLHL 434
S L L L
Sbjct: 456 S-FQENFLPDIFTELRNLTFLDL 477
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 21/215 (9%)
Query: 209 KFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLN---IPSLKCLPSQLCTLLNLQTLQMP 265
K K L+ L S + +L L++L L+ + C +L+ L +
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 266 SSYIDQSPEDIWMMQKLMHLNFGSITLPA-PPTNYSSSLKNLIF--VSALHPISCTPDIL 322
+ + + +++L HL+F L + SL+NLI+ +S H I
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 323 GRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVN---ESKPSRMVLSEYQFP-- 376
L +++ L+++G + + +L+ L +L L E LS F
Sbjct: 442 NGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNSL 493
Query: 377 PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411
SL L++++ +LK P ++L +Q + L N
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 64/300 (21%), Positives = 115/300 (38%), Gaps = 27/300 (9%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQLCT 255
R+ ++ + F F +L L+L ++ PG NLF L+ L L LK +P + T
Sbjct: 43 RIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101
Query: 256 -LLNLQTLQMPSSYIDQSPEDIWM-MQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS--- 310
L NL L + + I + ++ + L L G L S L +L ++
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161
Query: 311 -ALHPISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368
L I + L L + LR+ +++ + S +L +L+ L++ +
Sbjct: 162 CNLTSIP--TEALSHLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLEI-SHWPYLDT 215
Query: 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF-- 426
+ + +LT LS+++ L P + L Y++ L L N ++ +
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-----PISTIEGSMLHE 270
Query: 427 -PELKVLHLKSMYWLDEWTMGA-GAMPKLESLIVDPCAYLRKLPEEL-WCIQSLRKLDLH 483
L+ + L L A + L L V L L E + + +L L L
Sbjct: 271 LLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILD 328
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 20/210 (9%)
Query: 213 LRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYID 270
L+ L++G L L L+ L L +L +P++ L L L L++ I+
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189
Query: 271 QSPEDIWM-MQKLMHLNFGS---ITLPAPPTNYSSSLKNLIFVS-ALHPISCTPDILGRL 325
+ + + +L L + P Y +L +L L + + L
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP--YLAVRHL 247
Query: 326 PNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM-VLSEYQFP--PSLTH 381
++ L +S +S + L +L +L+ ++LV ++ V+ Y F L
Sbjct: 248 VYLRFLNLSYNPISTIEGS---MLHELLRLQEIQLVG----GQLAVVEPYAFRGLNYLRV 300
Query: 382 LSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411
L++S +L + ++ L L N
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSN 330
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 47/263 (17%), Positives = 91/263 (34%), Gaps = 26/263 (9%)
Query: 184 YLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFL----LKYL 239
+ L L + D ++ + L + + A LD + + +LF +
Sbjct: 229 VHRLVLGEFRNEGNLEKFD-KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNY 299
L +++ + Q L++ + Q P ++ L L F S +
Sbjct: 288 SLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE- 343
Query: 300 SSSLKNLIFVS----ALHPISCTPDILGRLPNIQTLRISGDLSY-YQSRVSKSLCKLQKL 354
L +L F+ L C +++ L DLS+ +S + L++L
Sbjct: 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL----DLSFNGVITMSSNFLGLEQL 398
Query: 355 EWLKLVN---ESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411
E L + + S + +L +L +S+T + L ++VLK+ N
Sbjct: 399 EHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 412 SYLGRKLACVGSGGFPELKVLHL 434
S+ L + L L L
Sbjct: 456 SFQENFLPDI-FTELRNLTFLDL 477
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 25/217 (11%)
Query: 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKL---NIPSLKCLPSQLCTLLNLQTLQMPS 266
K L+ L S +L L++L L + C +L+ L +
Sbjct: 324 LKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 267 SYIDQSPEDIWMMQKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVSALHPIS------CT 318
+ + + +++L HL+F + + + SL+NLI++ IS
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLD----ISHTHTRVAF 437
Query: 319 PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVN---ESKPSRMVLSEYQF 375
I L +++ L+++G+ S+ ++ + +L+ L +L L E
Sbjct: 438 NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF----NS 492
Query: 376 PPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNS 412
SL L++S+ + L +QVL N
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 14/207 (6%)
Query: 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPS---SYI 269
+ L+L + QFP L LK L S L +L+ L + S+
Sbjct: 306 WQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFK 362
Query: 270 DQSPEDIWMMQKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVS-ALHPISCTPDILGRLP 326
+ + L +L+ + + L++L F L +S + L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLR 421
Query: 327 NIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLS 385
N+ L IS + + L LE LK+ S + + +LT L LS
Sbjct: 422 NLIYLDISHTHTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 386 NTELKEDPMPTLEKLPYVQVLKLKQNS 412
+L++ L +QVL + N+
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNN 505
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 18/235 (7%)
Query: 212 YLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYID 270
+ ++L L+ L L L LPS L L L+ L + ++ +
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314
Query: 271 QSPEDIWM-MQKLMHLNFG--SITLPAPPTNYSSSLKNLIFVS----ALHPISCTPDILG 323
+ L HL+ + L +L+NL + + C L
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQLR 373
Query: 324 RLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVN---ESKPSRMVLSEYQFPPSLT 380
L ++Q+L +S + S +++ + +LE L L + K ++ L
Sbjct: 374 NLSHLQSLNLSY--NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN---LHLLK 428
Query: 381 HLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGS-GGFPELKVLHL 434
L+LS++ L + LP +Q L L+ N + + S L++L L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 48/286 (16%), Positives = 86/286 (30%), Gaps = 23/286 (8%)
Query: 213 LRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQL---CTLLNLQTLQMPSSY 268
L L LGS + LK L ++ L + +L + +
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 269 IDQSPEDIWMMQKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVS----ALHPISCTPDIL 322
I + LNFG L +S++++L + IS
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 323 GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVN---ESKPSRMVLSEYQFPPSL 379
+++++ + Y+ + S + L+ L L PS + +L
Sbjct: 251 LCEMSVESINLQK--HYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-----VGLSTL 303
Query: 380 THLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKS--M 437
L LS + + + P + L +K N+ L+ L L +
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-LENLENLRELDLSHDDI 362
Query: 438 YWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483
D + + L+SL + L E L LDL
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 47/252 (18%), Positives = 85/252 (33%), Gaps = 39/252 (15%)
Query: 197 RLARIDCENFCKKFKYLRVLDL-GSAVLDQFPPG-LENLFLLKYLKL---NIPSLKCLPS 251
+ + + F L L + G+ + G LENL L+ L L +I + C
Sbjct: 312 KFENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370
Query: 252 QLCTLLNLQTLQMPSSYIDQSPEDIWM-MQKLMHLNFGS--ITLPAPPTNYSSSLKNLIF 308
QL L +LQ+L + + + + +L L+ + + + + + L L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN-LHLLKV 429
Query: 309 VS----ALHPISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVN-- 361
++ L S + LP +Q L + G + + SL L +LE L L
Sbjct: 430 LNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 362 -ESKPSR------------------MVLSEYQFPP-SLTHLSLSNTELKEDPMPTLEKLP 401
S S +L+L++ + L L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILS 547
Query: 402 YVQVLKLKQNSY 413
+ + L+QN
Sbjct: 548 QQRTINLRQNPL 559
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 43/300 (14%), Positives = 108/300 (36%), Gaps = 29/300 (9%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQLCT 255
+ I +F L L++ + L + L+++ + +L L++ L
Sbjct: 135 TFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193
Query: 256 LL-NLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP 314
+L +++ L++ + + + + ++ S L + F +
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL-------AFRGSVLTDESF----NE 242
Query: 315 ISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKL----VNESKPSRMV 369
+ + L ++ + L + S + +L K+E + + + + +
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302
Query: 370 LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLA-CVGSGGFPE 428
+ Y + +++ N+++ P + L ++ L L +N + L G +P
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362
Query: 429 LKVLHL-----KSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483
L+ L L +SM E + + L SL + +P+ + +R L+L
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLT---LKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLS 418
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 41/217 (18%)
Query: 204 ENFCKKFKYLRVLDLG----SAVLDQFPPGLENLFLLKYLKL---NIPSLKCLPSQLCTL 256
+F + K L LDL + L+ L L ++ S++ L TL
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386
Query: 257 LNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPIS 316
NL +L + + P+ +K+ LN S + T +L+ L + +
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD----VSNNN 442
Query: 317 CTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFP 376
LP +Q L IS KL+ L +
Sbjct: 443 LD-SFSLFLPRLQELYISR-------------NKLKTL----------------PDASLF 472
Query: 377 PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSY 413
P L + +S +LK P ++L +Q + L N +
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 53/258 (20%), Positives = 88/258 (34%), Gaps = 32/258 (12%)
Query: 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKL---NIPSLKCLPSQLCTLLNLQTLQMPSSYI 269
V D S P GL +K L L I + L NLQ L + SS I
Sbjct: 7 SGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIG--HGDLRACANLQVLILKSSRI 62
Query: 270 DQSPEDIWM-MQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISC--TPDILGRL 325
+ D + + L HL+ L + +++ L +L +++ + P + L
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 326 PNIQTLRISGD--LSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEY-----QFPPS 378
N+QTLRI S + L L L++ + L Y +
Sbjct: 123 TNLQTLRIGNVETFSEIRRI---DFAGLTSLNELEI------KALSLRNYQSQSLKSIRD 173
Query: 379 LTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438
+ HL+L +E + L V+ L+L+ + LA P +V
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-----LARFQFSPLPVDEVSSPMKKL 228
Query: 439 WLDEWTMGAGAMPKLESL 456
+ + +L L
Sbjct: 229 AFRGSVLTDESFNELLKL 246
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 45/315 (14%), Positives = 97/315 (30%), Gaps = 36/315 (11%)
Query: 189 LNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNI---PS 245
SE+ E R + F + L L L+ I P
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413
Query: 246 LKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG--SITLPAPPTNYSSSL 303
+K + L + ++ I + I + KL + F T ++ +
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473
Query: 304 KNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQ--SRVSKSLCKLQKLEWLKLV- 360
+ +S L ++ + +L +++ L L +L+ L +
Sbjct: 474 SDYAKQYENEELS-----WSNLKDLTDV----ELYNCPNMTQLPDFLYDLPELQSLNIAC 524
Query: 361 -NESKPSRMVLSEYQFP------PSLTHLSLSNTELKEDPMP-TLEKLPYVQVLKLKQNS 412
+++ + P + + L+E P +L+K+ + +L N
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN- 583
Query: 413 YLGRKLACVGS-GGFPELKVLHLKSMYWLDEWTMGAGA-MPKLESLIVDPCAYLRKLPEE 470
K+ + + G +L L L ++E A ++E L L+ +P
Sbjct: 584 ----KVRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNI 637
Query: 471 LWC--IQSLRKLDLH 483
+ + +D
Sbjct: 638 FNAKSVYVMGSVDFS 652
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 39/302 (12%), Positives = 85/302 (28%), Gaps = 41/302 (13%)
Query: 213 LRVLDLGSA-VLDQFPPGLENLFLLKYLKLN----------IPSLKCLPSQLCTLLNLQT 261
L ++L + + Q P L +L L+ L + L T +Q
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552
Query: 262 LQMPSSYIDQSPE--DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS----ALHPI 315
M + +++ P + M KL L+ + + L + + I
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEI 610
Query: 316 SCTPDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVN---ESKPSRMVLS 371
D ++ L S L + + + + S+ + S
Sbjct: 611 P--EDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666
Query: 372 EYQF-PPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELK 430
+ + + ++LS E+++ P + + L N + K
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYK 725
Query: 431 VLHLKSMYWLD---------EWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLD 481
+ + +D A +P L ++ V P + L+
Sbjct: 726 --NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFG 782
Query: 482 LH 483
+
Sbjct: 783 IR 784
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 31/234 (13%), Positives = 76/234 (32%), Gaps = 34/234 (14%)
Query: 204 ENFCKKFKYLRVLDLGSAVLDQFPP--GLENLFLLKYLKLN------IPSLKCLPSQLCT 255
E+FC + L L P ++++++ + +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671
Query: 256 LLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGS---ITLPA-PPTNYSSSLKNLIFVS 310
+N T+ + + I + P E + + + ++P + KN ++
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731
Query: 311 ALH----PISCTPD--ILGRLPNIQTLRISGDLSYYQ-SRVSKSLCKLQKLEWLKLVNES 363
+ ++ D LP + + D+SY S +L+ + ++
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNM----DVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787
Query: 364 KPSRMVLSEYQFP------PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411
+ Q+P PSL L + + ++++ +L +L + N
Sbjct: 788 DAEGNRILR-QWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADN 837
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 24/245 (9%), Positives = 60/245 (24%), Gaps = 37/245 (15%)
Query: 249 LPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIF 308
+P + L L+ L + S + S K+ I
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGR--------------LFGDEELTPDMSEERKHRI- 383
Query: 309 VSALHPISCTPDILGRLPNIQTLRISGD-LSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367
+ L + + D ++ L+ ++ N +
Sbjct: 384 -----RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438
Query: 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFP 427
+ Q L + +N+ D + + +
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSW--SNLK 491
Query: 428 ELKVLHLKSMYWLDEWTMGAGAMPKLESL---------IVDPCAYLRKLPEELWCIQSLR 478
+L + L + + + +P+L+SL A +L ++ ++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 479 KLDLH 483
+
Sbjct: 552 IFYMG 556
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 26/222 (11%), Positives = 61/222 (27%), Gaps = 48/222 (21%)
Query: 209 KFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKLN------IPS--LKCLPSQLCTLLNL 259
K + L + +FP + + L+ IP LK L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730
Query: 260 QTLQMPSSYIDQSPEDIWM--MQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISC 317
T+ + + + +D + L +++ N SS
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY--------NCFSSF-------------- 768
Query: 318 TPDILGRLPNIQTLRISGDLSYYQSRVSK----SLCKLQKLEWLKL-VNESKPSRMVLSE 372
P ++ I +R+ + + L L++ N+ + +
Sbjct: 769 -PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-------IRK 820
Query: 373 --YQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNS 412
+ P L L +++ + ++ + L +
Sbjct: 821 VDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 57/305 (18%), Positives = 105/305 (34%), Gaps = 44/305 (14%)
Query: 213 LRVLDLGSAVLDQFPPG-LENLFLLKYLKL---NIPSLKCLPSQLCTLLNLQTLQMPSSY 268
L +LDL L+ L L+Y L NI L L L N++ L + S+
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL--FSHSLHGLFNVRYLNLKRSF 307
Query: 269 IDQS----------PEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS----ALHP 314
QS ++ L HLN +P +N + L NL ++S
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367
Query: 315 ISCTPDILGRLPN--IQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVN---ESKPSRM 368
+ T + L + + L ++ +S +S + L LE L L + +
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESD---AFSWLGHLEVLDLGLNEIGQELTGQ 424
Query: 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPE 428
++ + LS + + + +P +Q L L++ + +
Sbjct: 425 EWRGL---ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481
Query: 429 LKVLHLKS--MYWLDEWTMGAGAMPKLESL--------IVDPCAYLRKLPEELWCIQSLR 478
L +L L + + +++ + + KLE L + A L + L
Sbjct: 482 LTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 479 KLDLH 483
L+L
Sbjct: 540 ILNLE 544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 49/292 (16%), Positives = 89/292 (30%), Gaps = 36/292 (12%)
Query: 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKL---NIPSLKCLPSQLCTLLNLQTLQMPSSY 268
V D L Q P L + L L + L + L +L + +
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTN--ITVLNLTHNQLRRLP--AANFTRYSQLTSLDVGFNT 60
Query: 269 IDQSPED-IWMMQKLMHLNFGS---ITLPAPPTNYSSSLKNLIFVS-ALHPISCTPDILG 323
I + + + L LN L + ++L L +S ++ I +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK--NNPFV 118
Query: 324 RLPNIQTLRISGDLSY--YQSRVSKSLCKLQKLEWL-----KLVNESKPSRMVLSEYQFP 376
+ N+ TL DLS+ S + +L+ L+ L K+ + +
Sbjct: 119 KQKNLITL----DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA----N 170
Query: 377 PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN--SYLGRKLACVGSGGFPELKVLHL 434
SL L LS+ ++KE + + L L + C+ ++ L L
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSL 229
Query: 435 K--SMYWLDEWTMGAGAMPKLESLIVDPCAYLRKL-PEELWCIQSLRKLDLH 483
+ T L L + L + + + L L
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLE 280
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 39/263 (14%), Positives = 73/263 (27%), Gaps = 43/263 (16%)
Query: 213 LRVLDLGSAVLDQFPPG-LENLFLLKYLKL-------NIPSLKCLPSQLCTLLNLQTLQM 264
L +L+L + + L L+ L L + + L N+ + +
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT-----GQEWRGLENIFEIYL 437
Query: 265 PSSYIDQ-SPEDIWMMQKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVS----ALHPISC 317
+ Q + ++ L L + + L+NL + + +
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA--NI 495
Query: 318 TPDILGRLPNIQTLRISG------DLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLS 371
D+L L ++ L + L L L L L +
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL---ESNGFDEIP 552
Query: 372 EYQFP--PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL 429
F L + L L P ++ L L++N + V F L
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNL 611
Query: 430 KVLHL---------KSMYWLDEW 443
L + +S+ W W
Sbjct: 612 TELDMRFNPFDCTCESIAWFVNW 634
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 47/299 (15%), Positives = 92/299 (30%), Gaps = 38/299 (12%)
Query: 211 KYLRVLDLGSAVLDQFPPG-LENLFLLKYLKL---NIPSLKCLPSQLCTLLNLQTLQMPS 266
L+VL+L L Q L L L +I +K + NL TL +
Sbjct: 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSH 130
Query: 267 SYIDQSPED-IWMMQKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVSALH--PISC-TPD 320
+ + + ++ L L + I + +L + L I +P
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE-LSSNQIKEFSPG 189
Query: 321 ILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKL--VNESKPSRMVLSEYQFPP 377
+ + L ++ L + + L L S S ++
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT- 248
Query: 378 SLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM 437
+LT L LS L + LP ++ L+ N + + S L +++ +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-----NIQHLFSHSLHGLF--NVRYL 301
Query: 438 YWLDEWTMGAGAMPKLESLIVDPCAYLRKL--------------PEELWCIQSLRKLDL 482
+T + ++ L + +L+ L + +L+ L L
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 49/280 (17%), Positives = 91/280 (32%), Gaps = 40/280 (14%)
Query: 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYI 269
+ + L + + F + L + LK P+ L L++L + +
Sbjct: 284 LANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKG 340
Query: 270 DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQ 329
S + L +L+ N + C +++
Sbjct: 341 SISF-KKVALPSLSYLDLSR---------------NAL-----SFSGCCSYSDLGTNSLR 379
Query: 330 TLRISGDLSY-YQSRVSKSLCKLQKLEWLKLVN---ESKPSRMVLSEYQFPPSLTHLSLS 385
L DLS+ +S + L++L+ L + + S + L +L +S
Sbjct: 380 HL----DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDIS 432
Query: 386 NTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTM 445
T K D L + LK+ NS+ L+ V L L L L++ +
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQ-LEQISW 490
Query: 446 GA-GAMPKLESLIVDPCAYLRKLPEELWC-IQSLRKLDLH 483
G + +L+ L + L L + + SL LD
Sbjct: 491 GVFDTLHRLQLLNMS-HNNLLFLDSSHYNQLYSLSTLDCS 529
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 19/214 (8%)
Query: 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKL---NIPSLKCLPSQLCTLLNLQTLQMPS 266
+L+ L L L L YL L + C +L+ L +
Sbjct: 327 LPFLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385
Query: 267 SYIDQSPEDIWMMQKLMHLNFGSITLPA-PPTNYSSSLKNLIF--VSALHPISCTPDILG 323
+ + +++L HL+F TL + SL+ L++ +S + I
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445
Query: 324 RLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQ---FP--PS 378
L ++ TL+++G+ S+ + +S L +L L S+ L + F
Sbjct: 446 GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDL------SKCQLEQISWGVFDTLHR 498
Query: 379 LTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNS 412
L L++S+ L +L + L N
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 41/293 (13%), Positives = 82/293 (27%), Gaps = 32/293 (10%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPP----GLENL-FLLKYLKLNIPSLKCLPS 251
+ + L +DL + L + L +++ + +
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198
Query: 252 QLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSA 311
Q + L L + ++ + +Q L L+ + L +NL
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKT-CLQNLAGLHVHRLIL-----GEFKDERNLEIFE- 251
Query: 312 LHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLS 371
P I+ L ++ + S L + + L + S L
Sbjct: 252 -------PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL---AGVSIKYLE 301
Query: 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431
+ LS+ +LK+ P L L + L L N + P L
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTLDLPFL---KSLTLTMN----KGSISFKKVALPSLSY 354
Query: 432 LHLK--SMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDL 482
L L ++ + + L L + + ++ L+ LD
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF 406
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 30/227 (13%), Positives = 69/227 (30%), Gaps = 27/227 (11%)
Query: 226 FPPGLENLFLLKYLKLNI---PSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKL 282
F +K I P K + L + S+ I + + + KL
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKL 208
Query: 283 MHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQS 342
G+ A + +N + L ++ + + + +
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTE---DLKWDNLKDLTDVEVYNCPN--LT 263
Query: 343 RVSKSLCKLQKLEWLKL-------VNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMP 395
++ L L +++ + + + K L++ + + + LK P+
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323
Query: 396 T-LEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD 441
T L+K+ + +L+ N +L G P + L+
Sbjct: 324 TSLQKMKKLGMLECLYN-----QL----EGKLPAFG--SEIKLASLN 359
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 41/310 (13%), Positives = 92/310 (29%), Gaps = 47/310 (15%)
Query: 211 KYLRVLDLGS---------AVLDQFPPGLENLFLLKYLKL---NIPSLKCLPSQLCTLLN 258
++++++ Q ++ + + N+ + + + L +
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP-VETSLQKMKK 331
Query: 259 LQTLQMPSSYIDQSPEDIWMMQKLMHLNFG--SITLPAPPTNYSSSLKNLIFVSALH-PI 315
L L+ + ++ KL LN IT P N+ + + +S H +
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKL 389
Query: 316 SCTPDIL--GRLPNIQTL-----RISGDLSYYQSRVSKSLCKLQKLEWLKLVN---ESKP 365
P+I + + + I + + K + + L N P
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449
Query: 366 SRMVLSEYQFPPSLTHLSLSNTELKEDPM-------PTLEKLPYVQVLKLKQNSYLGRKL 418
+ L+ ++L L E P + + + L+ N L +
Sbjct: 450 K----ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLS 504
Query: 419 ACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYL------RKLPEELW 472
+ P L + L S ++ L+ + R+ PE +
Sbjct: 505 DDFRATTLPYLVGIDL-SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563
Query: 473 CIQSLRKLDL 482
SL +L +
Sbjct: 564 LCPSLTQLQI 573
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 29/256 (11%), Positives = 74/256 (28%), Gaps = 52/256 (20%)
Query: 204 ENFCKKFKYLRVLDLGSAVLDQFPPGLE--NLFLLKYLKLN--------IPSLKCLPSQL 253
NFC + + L L P + ++ ++ + + + L
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429
Query: 254 CTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGS---ITLPA-PPTNYSSSLKNLIF 308
+N+ ++ + ++ I + P E L +N +P + + + KN
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489
Query: 309 VSALH----PISCTPD--ILGRLPNIQTLRISGDLSYYQ-SRVSKSLCKLQKLEWLKLVN 361
++++ ++ D LP + + DLSY S+ L+ + N
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGI----DLSYNSFSKFPTQPLNSSTLKGFGIRN 545
Query: 362 ESKPSRMVLSEY--------------------------QFPPSLTHLSLSNTELKEDPMP 395
+ + P+++ L + + +
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLS 605
Query: 396 TLEKLPYVQVLKLKQN 411
+ + L +
Sbjct: 606 YVCPYIEAGMYMLFYD 621
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 36/314 (11%), Positives = 89/314 (28%), Gaps = 60/314 (19%)
Query: 209 KFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPS- 266
+ LR +G++ +Y + K + L +L +++ +
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ----YKTEDLKWDNLKDLTDVEVYNC 259
Query: 267 SYIDQSPEDIWMMQKLMHLNFGS---ITLPAPPTNYS-----SSLKNLIFVSALH----- 313
+ + P + + ++ +N I+ ++ + + + +
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319
Query: 314 -PISCTPDILGRLPNIQTLRISGDLSYYQ-SRVSKSLCKLQKLEWLKLVN---ESKPSRM 368
P+ L ++ + L + Y Q + KL L L P+
Sbjct: 320 FPV---ETSLQKMKKLGML----ECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPA-- 370
Query: 369 VLSEYQFPPSLTHLSLSNTELKEDP-MPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFP 427
+ F + +LS ++ +LK P + + + + + N +
Sbjct: 371 --NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS--VDGKNFDPLD 426
Query: 428 ELKVLHLKSMYWLD-----------EWTMGAGAMPKLESLIVD-------PCAYLRKLPE 469
++ ++ E L S+ + P L+ E
Sbjct: 427 PT-PFKGINVSSINLSNNQISKFPKEL---FSTGSPLSSINLMGNMLTEIPKNSLKDENE 482
Query: 470 ELWCIQSLRKLDLH 483
L +DL
Sbjct: 483 NFKNTYLLTSIDLR 496
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 48/265 (18%), Positives = 96/265 (36%), Gaps = 35/265 (13%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQ-LC 254
+ ++ F + K L+VL+L +++ L L+ L L+ L L S
Sbjct: 277 FVFSLNSRVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335
Query: 255 TLLNLQTLQMPSSYIDQSPEDIW-MMQKLMHLNFGS---ITLPAPPT--------NYSSS 302
L + + + ++I + + ++KL L+ T+ P+ N +
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395
Query: 303 LKNLIFVSALHPISCTP-------DILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKL 354
L + + L +S L R+P++Q L ++ S + S L
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--NPSL 453
Query: 355 EWLKL----VNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQ 410
E L L + + + + ++ L L L++ L P L ++ L L
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
Query: 411 NSYLGRKLACVGSGGFPE-LKVLHL 434
N +L + P L++L +
Sbjct: 514 N-----RLTVLSHNDLPANLEILDI 533
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 42/239 (17%), Positives = 80/239 (33%), Gaps = 37/239 (15%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKL---------NIPSL 246
L + NF + +DL + + L L+ L L IPS+
Sbjct: 325 LLGELYSSNF-YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
Query: 247 KCLPSQLCTLLNLQTLQMPSSYID------QSPEDIWMMQKLMHL--------NFGSITL 292
+ L+ L + + ++ I ++ + ++ + ++ HL F S +
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Query: 293 PAPPTNYSSSLKNLI----FVSALHPISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKS 347
P+ + SL+ L + D+ L ++Q L ++ L+ V
Sbjct: 444 DQTPSE-NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502
Query: 348 LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVL 406
L L L L + VLS P +L L +S +L L + +
Sbjct: 503 L---TALRGLSL---NSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 50/259 (19%), Positives = 86/259 (33%), Gaps = 31/259 (11%)
Query: 204 ENFCKKFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKL---NIPSLKCLPSQLCTLLNL 259
+ + LR+LDLGS+ + P + LF L L+L + L L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 260 QTLQMPSSYID--QSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL----IFVSALH 313
L + + I + L ++F S + + L+ ++A
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Query: 314 PISCTPDILGRLPN------IQTLRISGD----------LSYYQSRVSKSLCKLQKLEWL 357
S G+ N ++ L +SG+ + + SL +
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 358 KL--VNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG 415
N P + + S+ HL LS+ + E L ++VL L N
Sbjct: 246 GFGFHNIKDPDQNTFAG-LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-- 302
Query: 416 RKLACVGSGGFPELKVLHL 434
K+A G L+VL+L
Sbjct: 303 NKIADEAFYGLDNLQVLNL 321
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 55/334 (16%), Positives = 101/334 (30%), Gaps = 55/334 (16%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPPG-LENLFL--LKYLKLNIPSLKCLPS-- 251
++ + K L+ +D S + LE L L + L SL S
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Query: 252 -----QLCTLLNLQTLQMPSSYIDQSPED-------------IWMMQKLMHLNFGSITLP 293
+ L+ L + + + + +M FG +
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 294 APPTNYSSSLKNL----IFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLC 349
P N + L + +S S + L +++ L ++ + ++
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY--NKINKIADEAFY 311
Query: 350 KLQKLEWLKLVNESKPSRMVLSEYQFP--PSLTHLSLSNTELKEDPMPTLEKLPYVQVLK 407
L L+ L L S L F P + ++ L + T + L +Q L
Sbjct: 312 GLDNLQVLNL---SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368
Query: 408 LKQNS-------------YL-GRKLACVGSGGFPELKVLHLKSMY--WLDEWTMGAGAMP 451
L+ N+ +L G KL + ++HL LD +P
Sbjct: 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL-TANLIHLSENRLENLDILYFLLR-VP 426
Query: 452 KLESLIVDPCAYLRKLPEELWCI--QSLRKLDLH 483
L+ LI++ + SL +L L
Sbjct: 427 HLQILILNQN-RFSSCSGDQTPSENPSLEQLFLG 459
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 32/298 (10%), Positives = 79/298 (26%), Gaps = 13/298 (4%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTL 256
+ ++ L L+L + + LK L L+ L + + +
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSA 213
Query: 257 LNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVSALHP 314
+ + + ++ + + + Q L H + ++ S + + V+
Sbjct: 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQTV 272
Query: 315 ISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEY 373
T + + L L++ E L + + + E
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332
Query: 374 QFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLH 433
+ + + + + L+ K+ L S G L
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK-----ALDEQVSNGRRAHAELD 387
Query: 434 --LKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKL-PEELWCIQSLRKLDLHWPQTE 488
L+ E L+ L Y ++ ++R D++ +
Sbjct: 388 GTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 45/262 (17%), Positives = 85/262 (32%), Gaps = 55/262 (20%)
Query: 231 ENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQ-SPEDIWMMQKLMHLNFG 288
+N K K+ SLK S + N++ L + + + Q S D+ KL LN
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKS 347
S N++ + L ++TL ++ +
Sbjct: 67 S---------------NVL--YETLDL-------ESLSTLRTLDLNNNYVQ--------E 94
Query: 348 LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLK 407
L +E L N + +S + ++ L+N ++ VQ L
Sbjct: 95 LLVGPSIETLHAANNNISR---VSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 408 LKQNSYLGRKLACVGSGGF----PELKVLHLKS--MYWLDEWTMGAGAMPKLESLIVDPC 461
LK N ++ V L+ L+L+ +Y + + KL++L +
Sbjct: 151 LKLN-----EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLSSN 201
Query: 462 AYLRKLPEELWCIQSLRKLDLH 483
L + E + + L
Sbjct: 202 -KLAFMGPEFQSAAGVTWISLR 222
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 46/293 (15%), Positives = 91/293 (31%), Gaps = 40/293 (13%)
Query: 213 LRVLDLGSAVLD----QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSY 268
+ +DL S L+ L +L L+ L L+ + S +L +L + +
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111
Query: 269 ID---QSPEDIWMMQKLMHL----NFGSITLPAPPTNYSSSLK--NLIFVSALHPISCTP 319
+ + + L L N +SL+ +L S
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171
Query: 320 DILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFP--- 376
+ ++ L +S + + + LE+L + S S P
Sbjct: 172 VLSDGCGELKHL----AISGNKISGDVDVSRCVNLEFLDV------SSNNFST-GIPFLG 220
Query: 377 --PSLTHLSLSNTELKEDPMP-TLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLH 433
+L HL +S +L + +++L + N ++G + L+ L
Sbjct: 221 DCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGP----IPPLPLKSLQYLS 275
Query: 434 LKS---MYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483
L + ++ +GA L L + + +P L L L
Sbjct: 276 LAENKFTGEIPDFL--SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 62/310 (20%), Positives = 98/310 (31%), Gaps = 80/310 (25%)
Query: 204 ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLFLLKYLKL-------NIPSLKCLPSQLCT 255
+ L LDL PP + LL+ L L +P L
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-----MDTLLK 341
Query: 256 LLNLQTLQMPS-SYIDQSPEDIWMM-QKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVSA 311
+ L+ L + + + PE + + L+ L+ S + P P + L +
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 312 LH-----PISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVNESKP 365
+ I P L + +L +S LS + SL L KL LKL
Sbjct: 402 QNNGFTGKI---PPTLSNCSELVSLHLSFNYLS---GTIPSSLGSLSKLRDLKL------ 449
Query: 366 SR-----MVLSEYQFPPSLTHLSLSNTELKEDPMP-TLEKLPYVQVLKLKQNSYLGRKLA 419
+ E + +L L L +L +P L + + L N +L
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNN-----RL- 502
Query: 420 CVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRK------LPEELWC 473
+G P+ W+ G + L L L +P EL
Sbjct: 503 ---TGEIPK----------WI-------GRLENLAILK------LSNNSFSGNIPAELGD 536
Query: 474 IQSLRKLDLH 483
+SL LDL+
Sbjct: 537 CRSLIWLDLN 546
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 5/155 (3%)
Query: 208 KKFKYLRVLDLGSAVL-DQFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMP 265
L + L + L + P + L L LKL+ S +P++L +L L +
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 266 SSYIDQS-PEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGR 324
++ + + P ++ + NF + N + + L + L R
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 325 LPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKL 359
L I+ Y S + + +L +
Sbjct: 607 LSTRNPCNITSR--VYGGHTSPTFDNNGSMMFLDM 639
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 40/244 (16%), Positives = 77/244 (31%), Gaps = 32/244 (13%)
Query: 209 KFKYLRVLDLGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPS 266
L L L L P L +L L+ LKL + L+ +P +L + L+TL +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 267 SYIDQS-PEDIWMMQKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVSALH-----PISCT 318
+ + P + L ++ + +T P L+NL + + I
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNI--- 530
Query: 319 PDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPP 377
P LG ++ L ++ + + ++ K + + +
Sbjct: 531 PAELGDCRSLIWLDLNTNLFN---GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM---K 584
Query: 378 SLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM 437
H + + E + L +L + Y G + SM
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN----------NGSM 634
Query: 438 YWLD 441
+LD
Sbjct: 635 MFLD 638
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 6e-07
Identities = 60/344 (17%), Positives = 97/344 (28%), Gaps = 84/344 (24%)
Query: 196 DRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCT 255
R A + C VL++G + L P L + L + +L LP+
Sbjct: 26 GRAAVVQKMRACLNNG-NAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLTSLPALPP- 81
Query: 256 LLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTN-------------YSSS 302
L+TL++ + + P + +L + LPA P+
Sbjct: 82 --ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL 139
Query: 303 LKNLIFVSALH-PISCTPDILGRLPNIQTLRISG----------------DLSYYQ-SRV 344
L +S ++ P + L L +S Q + +
Sbjct: 140 PPGLQELSVSDNQLASLPALPSEL---CKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL 196
Query: 345 SKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQ 404
+L KL S P+ P L L +S L P +L +
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPA--------LPSGLKELIVSGNRLTSLP-VLPSEL---K 244
Query: 405 VLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYL 464
L + N L S L L SL V L
Sbjct: 245 ELMVSGN---------------------RLTS---LPML------PSGLLSLSVYRNQ-L 273
Query: 465 RKLPEELWCIQSLRKLDLHW-PQTELRQRLRTFKDMEWRYDIQL 507
+LPE L + S ++L P +E + Y +
Sbjct: 274 TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 43/234 (18%), Positives = 69/234 (29%), Gaps = 36/234 (15%)
Query: 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS 272
L+ L + L P L L L LP LQ L + + +
Sbjct: 143 LQELSVSDNQLASLPALPSEL---CKLWAYNNQLTSLPMLPS---GLQELSVSDNQLASL 196
Query: 273 PEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLR 332
P + KL N +LPA P+ LK LI ++ P + L +
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPSG----LKELIVSGN--RLTSLPVLPSELKEL---- 246
Query: 333 ISGDLSYYQ-SRVSKSLCKLQKLEWLKLVN---ESKPSRMVLSEYQFPPSLTHLSLSNTE 388
+S + + + L L + P S T ++L
Sbjct: 247 ---MVSGNRLTSLPMLPSGLL---SLSVYRNQLTRLPE-----SLIHLSSETTVNLEGNP 295
Query: 389 LKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442
L E + L ++ + G+ E + LHL + WL
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFD-----MAGASAPRETRALHLAAADWLVP 344
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 56/284 (19%)
Query: 212 YLRVLDLGSAVLDQFPPGL-ENLFLLKYLKLN-IPSLKCLPSQLCTLLNLQTLQMPSSYI 269
+LRV+ L++ P L + LL L+ N I +K L NL TL + ++ I
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALL-DLQNNKITEIK--DGDFKNLKNLHTLILINNKI 88
Query: 270 DQ-SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH--PISC-TPDILGRL 325
+ SP + KL L L P +L+ L +H I+ + L
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR----VHENEITKVRKSVFNGL 144
Query: 326 PNIQTLRISGDLSYYQSRVSK-SLCKLQKLEWLKLVNESKPSRMVLSE--YQFPPSLTHL 382
+ + + S + + ++KL ++++ + ++ PPSLT L
Sbjct: 145 NQMIVVELG-TNPLKSSGIENGAFQGMKKLSYIRI------ADTNITTIPQGLPPSLTEL 197
Query: 383 SLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF---PELKVLHLKSMYW 439
L ++ + +L+ L + L L N ++ V +G P L+ LHL +
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFN-----SISAVDNGSLANTPHLRELHLNNN-- 250
Query: 440 LDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483
L K+P L + ++ + LH
Sbjct: 251 -----------------------KLVKVPGGLADHKYIQVVYLH 271
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 36/283 (12%)
Query: 213 LRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYID 270
+++ ++ + + P L++ ++ L LN ++ + + +Q L M + I
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 271 QSPEDI-WMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS----ALHPISCTPDILGRL 325
P + + L L L + P + L +S L I D
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQAT 164
Query: 326 PNIQTLRISGDLSYYQ-SRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSL 384
++Q L LS + + V SL + L + S +LS P ++ L
Sbjct: 165 TSLQNL----QLSSNRLTHVDLSL--IPSLFHANV------SYNLLSTLAIPIAVEELDA 212
Query: 385 SNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGS-GGFPELKVLHLKS--MYWLD 441
S+ + P +L +LKL+ N L +P L + L + +
Sbjct: 213 SHNSINVVRGPVNVEL---TILKLQHN-----NLTDTAWLLNYPGLVEVDLSYNELEKIM 264
Query: 442 EWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHW 484
M +LE L + L L I +L+ LDL
Sbjct: 265 YHPFVK--MQRLERLYIS-NNRLVALNLYGQPIPTLKVLDLSH 304
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 41/200 (20%), Positives = 65/200 (32%), Gaps = 23/200 (11%)
Query: 244 PSLKCLPSQLCTLLNLQTLQMPSSYID--QSPEDIWMMQKLMHLNFGSITLPAPPTNYSS 301
P KC+ S L + + D EDI + + F + T+ P
Sbjct: 8 PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL-NNQKIVTFKNSTMRKLPAALLD 66
Query: 302 SLKNLIFVS----ALHPISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEW 356
S + + ++ + I IQ L + + Y V + L
Sbjct: 67 SFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPLLTV 121
Query: 357 LKLVNESKPSRMVLSEYQFP--PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYL 414
L L + L F P LT LS+SN L+ T + +Q L+L N
Sbjct: 122 LVL---ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--- 175
Query: 415 GRKLACVGSGGFPELKVLHL 434
+L V P L ++
Sbjct: 176 --RLTHVDLSLIPSLFHANV 193
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 55/315 (17%), Positives = 107/315 (33%), Gaps = 51/315 (16%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQ-LC 254
+ ++ F+ + +L+L +++ ++ L + +++ LP
Sbjct: 56 TMRKLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114
Query: 255 TLLNLQTLQMPSSYIDQSPEDIWM-MQKLMHLNFGS---ITLPAPPTNYSSSLKNLIFVS 310
+ L L + + + P I+ KL L+ + + ++SL+NL S
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174
Query: 311 -ALHPISCTPDILGRLPNIQTLRISG---------------DLSYYQ-SRVSKSLCKLQK 353
L + L +P++ +S D S+ + V + +
Sbjct: 175 NRLTHVD-----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVE 227
Query: 354 LEWLKLVN---ESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQ 410
L LKL + + P L + LS EL++ K+ ++ L +
Sbjct: 228 LTILKLQHNNLTDTAWLLNY------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 411 N--SYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLP 468
N L P LKVL L S L +LE+L +D + + L
Sbjct: 282 NRLVALNLYGQ-----PIPTLKVLDL-SHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK 334
Query: 469 EELWCIQSLRKLDLH 483
+L+ L L
Sbjct: 335 LSTH--HTLKNLTLS 347
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 55/284 (19%), Positives = 99/284 (34%), Gaps = 57/284 (20%)
Query: 212 YLRVLDLGSAVLDQFPPGL-ENLFLLKYLKLN-IPSLKCLPSQLCTLLNLQTLQMPSSYI 269
+LRV+ L P + + LL L+ N I L+ L +L L + ++ I
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLL-DLQNNDISELR--KDDFKGLQHLYALVLVNNKI 90
Query: 270 DQ-SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH--PISC-TPDILGRL 325
+ + ++KL L L P N SSL L +H I + L
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR----IHDNRIRKVPKGVFSGL 146
Query: 326 PNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVN---ESKPSRMVLSEYQFPPSLTHL 382
N+ + + G+ S KL +L++ P + P +L L
Sbjct: 147 RNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-------PETLNEL 198
Query: 383 SLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF---PELKVLHLKSMYW 439
L + +++ + L + + L L N ++ + +G P L+ LHL +
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHN-----QIRMIENGSLSFLPTLRELHLDNN-- 251
Query: 440 LDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483
L ++P L ++ L+ + LH
Sbjct: 252 -----------------------KLSRVPAGLPDLKLLQVVYLH 272
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 6e-06
Identities = 55/285 (19%), Positives = 96/285 (33%), Gaps = 40/285 (14%)
Query: 213 LRVLDLGSAVLDQFPPG-LENLFLLKYLKLN---IPSLKCLPSQLCTLLNLQTLQMPSSY 268
+++ ++ + + P L++ ++ L LN I + +Q L M +
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNA 110
Query: 269 IDQSPEDI-WMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS----ALHPISCTPDILG 323
I P + + L L L + P + L +S L I D
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQ 168
Query: 324 RLPNIQTLRISGDLSYYQ-SRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHL 382
++Q L LS + + V SL + L + S +LS P ++ L
Sbjct: 169 ATTSLQNL----QLSSNRLTHVDLSL--IPSLFHANV------SYNLLSTLAIPIAVEEL 216
Query: 383 SLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGS-GGFPELKVLHLKS--MYW 439
S+ + P +L +LKL+ N L +P L + L +
Sbjct: 217 DASHNSINVVRGPVNVEL---TILKLQHN-----NLTDTAWLLNYPGLVEVDLSYNELEK 268
Query: 440 LDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHW 484
+ M +LE L + L L I +L+ LDL
Sbjct: 269 IMYHPFVK--MQRLERLYIS-NNRLVALNLYGQPIPTLKVLDLSH 310
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 42/205 (20%), Positives = 65/205 (31%), Gaps = 29/205 (14%)
Query: 242 NIPSLKCLPSQLCTLLNLQTLQMPSSYID--QSPEDIWMMQKLMHLNFGSITLPAPPTNY 299
P KC+ S L + + D EDI + + F + T+ P
Sbjct: 12 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL-NNQKIVTFKNSTMRKLPAAL 70
Query: 300 SSSLKNLIFVS----ALHPISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKL 354
S + + ++ + I IQ L + + Y V + L
Sbjct: 71 LDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPLL 125
Query: 355 EWLKLVN---ESKPSRMVLSEYQFP--PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLK 409
L L S L F P LT LS+SN L+ T + +Q L+L
Sbjct: 126 TVLVLERNDLSS------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179
Query: 410 QNSYLGRKLACVGSGGFPELKVLHL 434
N +L V P L ++
Sbjct: 180 SN-----RLTHVDLSLIPSLFHANV 199
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 49/257 (19%), Positives = 89/257 (34%), Gaps = 40/257 (15%)
Query: 213 LRVLDLGSAVLDQFPPG-LENLFLLKYLKL---NIPSLKCLPSQLCTLLNLQTLQMPSSY 268
L+L S L P G + L L L L + C +L+ L + +
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 269 IDQSPEDIWMMQKLMHLNFGSITLPA-PPTNYSSSLKNLIFVS----ALHPISCTPDILG 323
+ + +++L HL+F L + SL+NLI++ I
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFN 147
Query: 324 RLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM---VLSEYQFP--PS 378
L +++ L+++G+ S+ ++ + +L+ L +L L S+ LS F S
Sbjct: 148 GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDL------SQCQLEQLSPTAFNSLSS 200
Query: 379 LTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF----PELKVLHL 434
L L++S+ + L +QVL N + L L+L
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-----HIMTSKKQELQHFPSSLAFLNL 255
Query: 435 K--------SMYWLDEW 443
+W
Sbjct: 256 TQNDFACTCEHQSFLQW 272
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 20/193 (10%)
Query: 301 SSLKNLIFVS----ALHPISCTPDILGRLPNIQTLRISGDLSYYQ-SRVSKSLCKLQKLE 355
L L +S L C +++ L DLS+ +S + L++LE
Sbjct: 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL----DLSFNGVITMSSNFLGLEQLE 104
Query: 356 WLKLVN---ESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNS 412
L + + V +L +L +S+T + L ++VLK+ NS
Sbjct: 105 HLDFQHSNLKQMSEFSVFLS---LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 413 YLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA-GAMPKLESLIVDPCAYLRKLPEE- 470
+ L + + L L L L++ + A ++ L+ L + L
Sbjct: 162 FQENFLPDIFT-ELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFP 218
Query: 471 LWCIQSLRKLDLH 483
C+ SL+ LD
Sbjct: 219 YKCLNSLQVLDYS 231
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 40/247 (16%), Positives = 71/247 (28%), Gaps = 42/247 (17%)
Query: 213 LRVLDLGSAVLDQF--PPGL-ENLFLLKYLKLNIPSLKCLP--SQLCTLLNLQTLQMPSS 267
L VL L LD + L L+ L L ++K + S + L + +
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 268 YIDQSPEDIWMM---QKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGR 324
+ E+ + + L SITL + K +
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF--------------K 210
Query: 325 LPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMV-------LSEYQF- 375
+I TL +SG ++ K++ L L N + F
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 376 ---PPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF---PEL 429
+ LS +++ ++ L L QN ++ + F L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-----EINKIDDNAFWGLTHL 325
Query: 430 KVLHLKS 436
L+L
Sbjct: 326 LKLNLSQ 332
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 23/166 (13%)
Query: 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYI 269
+ VL++ L P + L+YL L LP +L+ L + ++ +
Sbjct: 79 PPQITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPELPA---SLKHLDVDNNQL 132
Query: 270 DQSPEDIWMMQKLMHLNFGSIT-LPAPPTN-------------YSSSLKNLIFVSALH-P 314
PE +++ + + + +T LP PT+ ++L +
Sbjct: 133 TMLPELPALLEYI-NADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNL 191
Query: 315 ISCTPDILGRLPNIQTLRISGDLSYYQ-SRVSKSLCKLQKLEWLKL 359
+ P + R + + I + + + +++ L + L
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 40/261 (15%), Positives = 92/261 (35%), Gaps = 46/261 (17%)
Query: 227 PPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHL 285
P + N FL + + +L +P + + + S +++ P +++
Sbjct: 5 PRNVSNTFLQE-PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63
Query: 286 NFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQ-SRV 344
L ++ L +S P++ ++++L S + +
Sbjct: 64 RL--------RDCLDRQAHEL-ELNNLG-LSSLPELPP---HLESL----VASCNSLTEL 106
Query: 345 SKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQ 404
+ L+ L ++ PP L +L +SN +L++ +P L+ +++
Sbjct: 107 PELPQSLKSLLVDNNNLKALSD--------LPPLLEYLGVSNNQLEK--LPELQNSSFLK 156
Query: 405 VLKLKQNSYLGRKLACVGSGGFPELKVLHLK--SMYWLDEWTMGAGAMPKLESLIVDPCA 462
++ + N L + P L+ + + L E +P L ++ D
Sbjct: 157 IIDVDNN-----SLKKL-PDLPPSLEFIAAGNNQLEELPEL----QNLPFLTAIYADNN- 205
Query: 463 YLRKLPEELWCIQSLRKLDLH 483
L+KLP+ SL +
Sbjct: 206 SLKKLPDLP---LSLESIVAG 223
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 50/300 (16%), Positives = 86/300 (28%), Gaps = 56/300 (18%)
Query: 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS 272
L+L + L P + L+ L + SL LP +L +L +
Sbjct: 73 AHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129
Query: 273 PE----------------DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PI 315
P ++ L ++ + +L P +L F++A + +
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQL 185
Query: 316 SCTPDILGRLPNIQTLRISGDLSYYQ-SRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQ 374
P++ LP + + ++ L+ + + L E Q
Sbjct: 186 EELPEL-QNLPFLTAI----YADNNSLKKLPDLPLSLESIV----AGNNILEE--LPELQ 234
Query: 375 FPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNS-----------YLGRKLACVGS 423
P LT + N LK P L + V + + S
Sbjct: 235 NLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 293
Query: 424 GGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483
P L L+ S + P LE L V L +LP L +L
Sbjct: 294 ELPPNLYYLNASSNE-IRSLC---DLPPSLEELNVSNN-KLIELPAL---PPRLERLIAS 345
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 54/308 (17%), Positives = 107/308 (34%), Gaps = 89/308 (28%)
Query: 211 KYLRVLDLGSAVLDQFPPGLENLFL----------------LKYLKLNIPSLKCLPSQLC 254
K L V + L PP LE L + LK + ++ SLK LP
Sbjct: 114 KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP 173
Query: 255 TLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH- 313
+L+ + ++ +++ PE + + L + + +L P +L + A +
Sbjct: 174 ---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNN 225
Query: 314 PISCTPDILGRLPNIQTLRISG----------------DLSYYQ-SRVSKSLCKLQKLEW 356
+ P++ LP + T+ ++ + + + L L+
Sbjct: 226 ILEELPEL-QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284
Query: 357 LKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR 416
+ + PP+L +L+ S+ E++ + P ++ L + N
Sbjct: 285 SENIFSGLSE--------LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNN----- 327
Query: 417 KLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQS 476
KL P L P+LE LI +L ++PE Q+
Sbjct: 328 KLIE-----LPAL--------------------PPRLERLIASFN-HLAEVPEL---PQN 358
Query: 477 LRKLDLHW 484
L++L + +
Sbjct: 359 LKQLHVEY 366
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 49/272 (18%), Positives = 99/272 (36%), Gaps = 49/272 (18%)
Query: 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS 272
L+++D+ + L + P +L +++ L+ LP L L L + ++ + +
Sbjct: 155 LKIIDVDNNSLKKLPDLPPSL---EFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKL 210
Query: 273 PEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTL 331
P+ L + G+ L P +L L + A + + PD+ L +
Sbjct: 211 PDLP---LSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVR 265
Query: 332 RISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE 391
+ + + L L+ + + PP+L +L+ S+ E++
Sbjct: 266 DNYL------TDLPELPQSLTFLDVSENIFSGLSE--------LPPNLYYLNASSNEIRS 311
Query: 392 DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVL-----HLKSMYWLDEWTMG 446
+ P ++ L + N KL + P L+ L HL + E
Sbjct: 312 LC----DLPPSLEELNVSNN-----KLIEL-PALPPRLERLIASFNHLAE---VPEL--- 355
Query: 447 AGAMPKLESLIVDPCAYLRKLPEELWCIQSLR 478
L+ L V+ LR+ P+ ++ LR
Sbjct: 356 ---PQNLKQLHVEYNP-LREFPDIPESVEDLR 383
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 41/226 (18%), Positives = 72/226 (31%), Gaps = 43/226 (19%)
Query: 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS 272
LR L L + P L NL + L L S L + L L + S + +
Sbjct: 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KD 169
Query: 273 PEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISC------TPDILGRLP 326
I + L L+ N + L +++LH + + +
Sbjct: 170 VTPIANLTDLYSLSLNY--------NQIEDISPLASLTSLHYFTAYVNQITDITPVANMT 221
Query: 327 NIQTLRISG------------------DLSYYQSRVSKSLCKLQKLEWLKLVN---ESKP 365
+ +L+I ++ Q ++ L KL+ L + +
Sbjct: 222 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD-- 279
Query: 366 SRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411
+S L L L+N +L + M + L + L L QN
Sbjct: 280 ----ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 46/264 (17%), Positives = 87/264 (32%), Gaps = 52/264 (19%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQ-LC 254
++ I +F K ++L +L L + G L L L+L L +P+
Sbjct: 75 QIQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133
Query: 255 TLLNLQTLQMPSSYIDQSPEDIWM-MQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313
L L+ L + ++ I+ P + + L L+ G S +
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE-------LKRLSYI---------- 176
Query: 314 PISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSE 372
+ L N++ L ++ +L + L L KL+ L L + +
Sbjct: 177 ----SEGAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHLSA---IRP 224
Query: 373 YQFP--PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF---P 427
F L L + ++++ + L + + L N L + F
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-----NLTLLPHDLFTPLH 279
Query: 428 ELKVLHLKS--------MYWLDEW 443
L+ +HL + WL W
Sbjct: 280 HLERIHLHHNPWNCNCDILWLSWW 303
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 19/214 (8%)
Query: 213 LRVLDLGSAVLDQFPPGL-ENLFLLKYLKLNIPSLKCLP-----SQLCTLLNLQTLQMPS 266
L LDL L + L L +L L K L S L L L+ M +
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161
Query: 267 -SYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS-ALHPISCTPDIL-G 323
+ I +D + L L + L + S++N+ + + +I
Sbjct: 162 FTKI--QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219
Query: 324 RLPNIQTLRISG-DLSYYQSR-----VSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPP 377
+++ L + DL + + SL K +K+ +ES V+
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQIS 277
Query: 378 SLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411
L L S +LK P ++L +Q + L N
Sbjct: 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-05
Identities = 32/182 (17%), Positives = 56/182 (30%), Gaps = 13/182 (7%)
Query: 312 LHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLS 371
L + PD+ GRL + + S+ +++ + ++ + L N +
Sbjct: 54 LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHG 112
Query: 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431
L +LSL L + + TL K + L L S L
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172
Query: 432 LHLKSMYWLDEWTMG---AGAMPKLESLIVDPC------AYLRKLPEELWCIQSLRKLDL 482
L+L + E + A + L + + L L +L LDL
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---PNLVHLDL 229
Query: 483 HW 484
Sbjct: 230 SD 231
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 18/210 (8%)
Query: 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSS 267
L L L L L +L L L L + L L L L L++ ++
Sbjct: 218 GILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 275
Query: 268 YIDQSPEDIWMMQKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGR 324
I + + + L +L + +P S+LKNL +++ IS +
Sbjct: 276 QI-SNISPLAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP-VSS 329
Query: 325 LPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSL 384
L +Q L + SL L + WL + L+ +T L L
Sbjct: 330 LTKLQRL----FFYNNKVSDVSSLANLTNINWLSAGHNQISD---LTPLANLTRITQLGL 382
Query: 385 SNTELKEDPMPTLEKLPYVQVLKLKQNSYL 414
++ P+ + +K + +
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNVTGALI 412
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 26/213 (12%)
Query: 228 PGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287
L L ++ S L + TLQ I +S + + + L +NF
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGI-KSIDGVEYLNNLTQINF 75
Query: 288 GS--ITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRV 344
+ +T P N L L+ + + I+ L L N+ L L Q
Sbjct: 76 SNNQLTDITPLKN----LTKLVDILMNNNQIA-DITPLANLTNLTGL----TLFNNQITD 126
Query: 345 SKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQ 404
L L L L+L S + +S SL LS N P+ L L +
Sbjct: 127 IDPLKNLTNLNRLEL---SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL---E 180
Query: 405 VLKLKQNSYLGRKLACVGS-GGFPELKVLHLKS 436
L + N K++ + L+ L +
Sbjct: 181 RLDISSN-----KVSDISVLAKLTNLESLIATN 208
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 43/292 (14%), Positives = 87/292 (29%), Gaps = 49/292 (16%)
Query: 151 WSPDMVEEPMANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKF 210
W ++V C + ++ +++ + + + E L + E +C+
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV-LLKDRPECWCRDS 345
Query: 211 ---KYLRVLDLGSAVLDQFPPGLENLFLLKYLKL--------------NIPSLKCLPSQL 253
+ L +L LE+ L+ L+ + L L
Sbjct: 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405
Query: 254 CTLLNLQTL---------QMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLK 304
L+ + + S ++ ++ + L+ L L+
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-----HLE 460
Query: 305 NLIFVSALH----PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLV 360
L+ V+ L + P L L ++ L S + L +L+ L L
Sbjct: 461 QLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALENVDGVANLPRLQELLLC 516
Query: 361 N---ESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPT---LEKLPYVQVL 406
N + + L P L L+L L ++ E LP V +
Sbjct: 517 NNRLQQSAAIQPLVSC---PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 45/267 (16%), Positives = 81/267 (30%), Gaps = 35/267 (13%)
Query: 169 LKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPP 228
+ D+FP D S + + E I E L LD ++ +
Sbjct: 8 TQSFNDWFP----DDNFASEVAAAFEMQATDTISEEQL----ATLTSLDCHNSSITDMT- 58
Query: 229 GLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG 288
G+E L L L ++ L L NL L S+ + + + KL +LN
Sbjct: 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114
Query: 289 SITLPAPPTNYSSSLKNLIFVS-ALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKS 347
+ L + + L L L I + + L D +
Sbjct: 115 TNKLTKLDVSQNPLLTYLNCARNTLTEID-----VSHNTQLTEL----DCHLNKKITKLD 165
Query: 348 LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLK 407
+ +L L + +K + + +S+ L L+ + + L + + L
Sbjct: 166 VTPQTQLTTLDC-SFNKITELDVSQ---NKLLNRLNCDTNNITK---LDLNQNIQLTFLD 218
Query: 408 LKQNSYLGRKLACVGSGGFPELKVLHL 434
N KL + +L
Sbjct: 219 CSSN-----KLTEIDVTPLTQLTYFDC 240
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 15/235 (6%)
Query: 207 CKKFKYLRVLDLGSAVLDQFPPG--LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQM 264
C L+ LDL D P N+ LK+L L+ L+ LN+ + +
Sbjct: 86 CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145
Query: 265 PSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGR 324
ED + + + N F L T L
Sbjct: 146 VLGETYGEKED-----------PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL-E 193
Query: 325 LPNIQTLRISGDLSYYQSRVSKSLCKLQKLEW-LKLVNESKPSRMVLSEYQFPPSLTHLS 383
L NI+ + SY+ S ++K + L + + S + + + + ++ + S
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253
Query: 384 LSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438
+SN +L+ + L + + S + +++K+
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 52/266 (19%), Positives = 86/266 (32%), Gaps = 56/266 (21%)
Query: 197 RLARIDCENFCKKFKYLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCLPSQ-LC 254
+ I + F + +L VL LG + Q G L L L+L L +PS
Sbjct: 86 NIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144
Query: 255 TLLNLQTLQMPSSYIDQSPEDIWM-MQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313
L L+ L + ++ I+ P + + LM L+ G +
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE-------LKKLEYI---------- 187
Query: 314 PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVN---ESKPSRMVL 370
+ L N++ L +L + +L L LE L++ +
Sbjct: 188 ----SEGAFEGLFNLKYL----NLGMCNIKDMPNLTPLVGLEELEMSGNHFPE------I 233
Query: 371 SEYQFP--PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF-- 426
F SL L + N+++ + L + L L N L+ + F
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-----NLSSLPHDLFTP 288
Query: 427 -PELKVLHLKS--------MYWLDEW 443
L LHL + WL W
Sbjct: 289 LRYLVELHLHHNPWNCDCDILWLAWW 314
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 24/209 (11%)
Query: 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSS 267
+ G + + +L + L + + + L NL L++ +
Sbjct: 16 PALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDN 73
Query: 268 YIDQSPEDIWMMQKLMHLNFGS--ITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRL 325
I + + K+ L + + S +K L S I+ L L
Sbjct: 74 QI-TDLAPLKNLTKITELELSGNPLKNVSAIAGLQS-IKTLDLTS--TQITDVTP-LAGL 128
Query: 326 PNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVN---ESKPSRMVLSEYQFPPSLTHL 382
N+Q L L Q L L L++L + N L+ LT L
Sbjct: 129 SNLQVL----YLDLNQITNISPLAGLTNLQYLSIGNAQVSD------LTPLANLSKLTTL 178
Query: 383 SLSNTELKEDPMPTLEKLPYVQVLKLKQN 411
+ ++ + + L LP + + LK N
Sbjct: 179 KADDNKISD--ISPLASLPNLIEVHLKNN 205
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 19/186 (10%)
Query: 229 GLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG 288
L + ++ + L + TL + + + E + + L+ L
Sbjct: 14 PDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELK 71
Query: 289 S--ITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVS 345
IT AP +L + + P+ + L +I+TL DL+ Q
Sbjct: 72 DNQITDLAP----LKNLTKITELELSGNPLK-NVSAIAGLQSIKTL----DLTSTQITDV 122
Query: 346 KSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQV 405
L L L+ L L +S +L +LS+ N ++ + + L L +
Sbjct: 123 TPLAGLSNLQVLYL---DLNQITNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTT 177
Query: 406 LKLKQN 411
LK N
Sbjct: 178 LKADDN 183
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 42/237 (17%), Positives = 73/237 (30%), Gaps = 26/237 (10%)
Query: 207 CKKFKYLRVLDLGSAVLDQFPPGLE--NLFLLKYLKLNIPSLKCLPSQLCTLLNLQT--L 262
C LR LDL D P E NL L +L L+ + L L+L L
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176
Query: 263 QMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDIL 322
+ S +I + + L+ L P + S N+ + H
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLH-----LVFHPNSLFSVQVNMSVNALGHL-------- 223
Query: 323 GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHL 382
+L NI+ + L + + K S + + +P + +L
Sbjct: 224 -QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-FFWPRPVEYL 281
Query: 383 SLSNTELKEDPMPTLE-----KLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHL 434
++ N + E L + + +K +L F E+ + L
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL--FSKEALYSVFAEMNIKML 336
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 28/225 (12%)
Query: 225 QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMH 284
+P +E L + + L +L + + S E +
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE--ALYSVFAE 330
Query: 285 LNFGSIT------LPAPPTNYSSSLKNLIF-VSALHPISCTPDILGRLPNIQTLRISG-- 335
+N ++ + SS L F + L +QTL +
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF--TDSVFQGCSTLKRLQTLILQRNG 388
Query: 336 --DLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDP 393
+ +V+ + LE L + S S + S+ L+LS+ L
Sbjct: 389 LKNFF----KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 394 MPTLEKLPYVQVLKLKQNSYLGRKLACVGSG--GFPELKVLHLKS 436
L P V+VL L N ++ + L+ L++ S
Sbjct: 445 FRCL--PPKVKVLDLHNN-----RIMSIPKDVTHLQALQELNVAS 482
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 45/262 (17%), Positives = 85/262 (32%), Gaps = 55/262 (20%)
Query: 231 ENLFLLKYLKLNIPSLKCLPSQLCTLL-NLQTLQMPSSYIDQ-SPEDIWMMQKLMHLNFG 288
+N K K+ SLK + L N++ L + + + Q S D+ KL LN
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISG-DLSYYQSRVSKS 347
S N++ + L ++TL ++ +
Sbjct: 67 S---------------NVL--YETLDL-------ESLSTLRTLDLNNNYVQ--------E 94
Query: 348 LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLK 407
L +E L N + +S + ++ L+N ++ VQ L
Sbjct: 95 LLVGPSIETLHAANNNISR---VSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 408 LKQNSYLGRKLACVGSGGF----PELKVLHLKS--MYWLDEWTMGAGAMPKLESLIVDPC 461
LK N ++ V L+ L+L+ +Y + + KL++L +
Sbjct: 151 LKLN-----EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLSSN 201
Query: 462 AYLRKLPEELWCIQSLRKLDLH 483
L + E + + L
Sbjct: 202 -KLAFMGPEFQSAAGVTWISLR 222
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.96 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.96 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.95 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.95 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.95 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.95 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.95 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.95 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.95 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.95 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.95 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.95 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.95 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.94 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.93 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.93 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.93 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.93 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.93 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.93 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.92 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.92 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.92 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.92 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.92 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.91 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.9 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.89 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.89 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.88 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.88 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.87 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.87 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.87 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.87 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.87 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.86 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.86 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.85 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.85 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.85 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.85 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.84 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.84 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.84 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.84 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.84 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.82 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.82 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.82 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.8 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.79 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.79 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.78 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.78 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.78 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.78 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.78 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.78 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.77 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.77 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.76 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.76 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.76 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.75 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.75 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.75 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.74 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.73 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.73 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.72 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.72 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.71 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.71 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.71 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.68 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.68 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.64 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.63 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.62 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.62 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.62 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.61 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.61 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.61 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.6 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.6 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.56 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.55 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.55 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.55 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.53 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.51 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.5 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.49 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.49 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.48 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.48 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.47 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.45 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.45 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.44 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.44 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.42 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.42 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.42 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.39 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.38 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.38 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.36 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.35 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.34 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.34 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.28 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.28 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.25 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.23 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.2 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.19 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.14 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.12 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.11 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.11 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.05 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.03 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.02 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.99 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.84 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.81 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.74 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.67 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.62 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.5 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.45 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.4 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.4 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.4 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.36 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.2 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.12 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.11 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.9 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.79 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.75 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.8 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.28 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.37 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.11 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-31 Score=285.29 Aligned_cols=335 Identities=19% Similarity=0.177 Sum_probs=177.6
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCcc-c
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLF-L 235 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~-~ 235 (512)
..++++.+..+......+.. .+++|++|.+.+|...+ .+ ...+..+++|++|++++|.++ .+|..+..++ +
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG----ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE----ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC----cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 34455555433333222222 45555555555554432 23 232266666666666666655 4554444333 3
Q ss_pred --------------------------cCeeeecCCCCc-ccChhhhcCcCCcEEecCCcccc-ccchhhhccccCceeec
Q 010381 236 --------------------------LKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 236 --------------------------L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l 287 (512)
|++|++++|.++ .+|..++++++|++|++++|.+. .+|..++++++|++|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 333333333333 34444555555555555555442 34444555555555555
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC-
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK- 364 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~- 364 (512)
++|.+.+.+|..++.+++|+.|++++ .+ +..|..++.+++|+.|++++| .....+|..++.+++|+.|++++|.+
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN--RLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS--CCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC--ccCCcCChHHhcCCCCCEEECCCCccc
Confidence 55555555555555555555555543 11 234445555555555555555 24444555555555555555555433
Q ss_pred ---CCCcccCcCCCCCCccEEEEecccCCCCCCC----------------------------------------------
Q 010381 365 ---PSRMVLSEYQFPPSLTHLSLSNTELKEDPMP---------------------------------------------- 395 (512)
Q Consensus 365 ---p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~---------------------------------------------- 395 (512)
|. .+..+ ++|+.|++++|.+.+..|.
T Consensus 528 ~~~p~----~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 528 GNIPA----ELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp EECCG----GGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CcCCH----HHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 33 45555 6666666666654433222
Q ss_pred ------------------------CCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCcc
Q 010381 396 ------------------------TLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMP 451 (512)
Q Consensus 396 ------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~ 451 (512)
.++.+++|+.|++++|.+.+..+.. ++.+++|+.|+|++|.....+|..++.++
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~--l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH--HhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 2333456666777766666655544 56677777888877554447777777888
Q ss_pred ccceeeecCCcccCCCCcccCCCCCCcEEEccCChH---------------------------HHHHHhcccCCCceeEE
Q 010381 452 KLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQT---------------------------ELRQRLRTFKDMEWRYD 504 (512)
Q Consensus 452 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~---------------------------~~~~~~~~~~~~~~~~~ 504 (512)
+|+.|++++|.....+|..+..+++|++|++++|+- .. ..|.. ..+++|++
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~-~~~~~~~~ 758 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDP-SNADGYAH 758 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCS-CC------
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCC-CccCCCCC
Confidence 888888888877777888888888888888887731 01 13555 67888999
Q ss_pred EeeccC
Q 010381 505 IQLYPY 510 (512)
Q Consensus 505 i~~ip~ 510 (512)
|+|+|.
T Consensus 759 ~~~~~~ 764 (768)
T 3rgz_A 759 HQRSHH 764 (768)
T ss_dssp ------
T ss_pred CCCccc
Confidence 999986
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=255.70 Aligned_cols=317 Identities=18% Similarity=0.139 Sum_probs=246.5
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCc-cCccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQ-FPPGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~-lp~~l~~l~ 234 (512)
.+..++++.+..+......+.. .+++|++|.+.++.... .+ +..|..+++|++|++++|.++. .|..+++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----eECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 5578999999977777765554 89999999999987642 34 4444899999999999999984 478899999
Q ss_pred ccCeeeecCCCCcc-cChh--hhcCcCCcEEecCCcccccc-chh-hhccccCceeecCCcccCCCCCCCCCCC--CCCC
Q 010381 235 LLKYLKLNIPSLKC-LPSQ--LCTLLNLQTLQMPSSYIDQS-PED-IWMMQKLMHLNFGSITLPAPPTNYSSSL--KNLI 307 (512)
Q Consensus 235 ~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~L~~~~~~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~ 307 (512)
+|++|++++|.++. .|.. ++.+++|++|++++|.+..+ |.. +.++++|++|++++|.+.+..|..+.++ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999999983 4544 88999999999999988776 544 7899999999999999988888888776 5678
Q ss_pred eeecCC-CCccCc---------hhcCCCCCCCeEEEeccchhhhhhHHHhccCC--------------------------
Q 010381 308 FVSALH-PISCTP---------DILGRLPNIQTLRISGDLSYYQSRVSKSLCKL-------------------------- 351 (512)
Q Consensus 308 ~l~l~~-~~~~~~---------~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l-------------------------- 351 (512)
.+++++ .+...+ ..+..+++|+.|++++| ......+..+...
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 888875 111111 12345678999999988 3444455443222
Q ss_pred -------------CCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCcee
Q 010381 352 -------------QKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKL 418 (512)
Q Consensus 352 -------------~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 418 (512)
++|+.|++++|.+.....-++..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 467777777665421100067788 999999999999988888899999999999999998865443
Q ss_pred eeeCCCCCccccEEEecCCCCccee-eeCCCCccccceeeecCCcccCCCCc-ccCCCCCCcEEEccCCh
Q 010381 419 ACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 419 ~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 486 (512)
.. ++++++|++|++++| .++.+ |..+..+++|++|++++|. ++.+|. .+..+++|++|++++|+
T Consensus 341 ~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RM--FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GG--GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hH--hcCcccCCEEECCCC-cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 33 688999999999996 45555 6778899999999999998 445554 56899999999999875
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=271.68 Aligned_cols=314 Identities=18% Similarity=0.137 Sum_probs=232.0
Q ss_pred CCceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC--------------
Q 010381 160 MANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD-------------- 224 (512)
Q Consensus 160 ~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-------------- 224 (512)
...++++.+..+.....++.. .+++|++|.+.+|.+.. .++..+..+++|++|++++|.++
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG----DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS----CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC----cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence 456777777755554433334 67777777777776642 33333366666666666666544
Q ss_pred ---------ccCccccCc-cccCeeeecCCCCc-ccChhhhcCcCCcEEecCCcccc-ccchh-hhccccCceeecCCcc
Q 010381 225 ---------QFPPGLENL-FLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYID-QSPED-IWMMQKLMHLNFGSIT 291 (512)
Q Consensus 225 ---------~lp~~l~~l-~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~-~lp~~-i~~l~~L~~L~l~~~~ 291 (512)
.+|..+... ++|++|++++|.++ .+|..++++++|++|++++|.+. .+|.. +.++++|++|++++|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 444444443 66666666666666 56666667777777777777554 66654 6677777777777777
Q ss_pred cCCCCCCCCCCCC-CCCeeecCCC-C-ccCchhcCC--CCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCC---
Q 010381 292 LPAPPTNYSSSLK-NLIFVSALHP-I-SCTPDILGR--LPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNES--- 363 (512)
Q Consensus 292 ~~~~~p~~~~~l~-~L~~l~l~~~-~-~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~--- 363 (512)
+.+.+|..+.+++ +|+.++++++ + +..+..+.. +++|+.|++++| .....+|..+.++++|+.|++++|.
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC--ccccccCHHHhcCCCCCEEECcCCcccC
Confidence 6666677666665 6777777641 0 234445544 678888888888 4556778888899999999999874
Q ss_pred -CCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcce
Q 010381 364 -KPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 364 -~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
+|. .+..+ ++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+.. ++.+++|++|++++|.....
T Consensus 433 ~~p~----~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 433 TIPS----SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp CCCG----GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCSC
T ss_pred cccH----HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEccCCccCCc
Confidence 355 67888 99999999999998888989999999999999999988776554 67899999999999766558
Q ss_pred eeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 443 l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 88889999999999999999888999999999999999999986
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=259.65 Aligned_cols=131 Identities=17% Similarity=0.167 Sum_probs=92.4
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~ 234 (512)
.+..++++.+..+.....+... .+++|++|++++|.+. .+ +..|.++++|++|++++|.++.+ |..|++++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-----ccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 4567778888766666655544 7788888888877665 33 33347778888888888777744 66777777
Q ss_pred ccCeeeecCCCCcccC-hhhhcCcCCcEEecCCcccc--ccchhhhccccCceeecCCcccCC
Q 010381 235 LLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYID--QSPEDIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~ 294 (512)
+|++|++++|.++.+| ..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 8888888777777555 55777777777777777665 467777777777777777776554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=260.85 Aligned_cols=264 Identities=19% Similarity=0.224 Sum_probs=162.9
Q ss_pred CeeEEEEecCCcCCccCc--cccCccccCeeeecCCCCc-ccChhhhcCcCCcEEecCCccccccchhhhcccc-Cceee
Q 010381 211 KYLRVLDLGSAVLDQFPP--GLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQK-LMHLN 286 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~-L~~L~ 286 (512)
++|++|++++|.++.+|. .++.+++|++|++++|.++ .+| .++.+++|++|++++|.+..+|..+.++++ |++|+
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence 556666666666555555 5666666666666666666 555 555666666666666655566666666666 66666
Q ss_pred cCCcccCCCCCCCCCCCC--CCCeeecCC-CC-ccCchhcC-------CCCCCCeEEEeccchhhhhhHHHh-ccCCCCC
Q 010381 287 FGSITLPAPPTNYSSSLK--NLIFVSALH-PI-SCTPDILG-------RLPNIQTLRISGDLSYYQSRVSKS-LCKLQKL 354 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~--~L~~l~l~~-~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L 354 (512)
+++|.+. .+|..++.+. +|+.|++++ .+ +..|..+. .+++|+.|++++|. .. .+|.. +..+++|
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l~-~lp~~~~~~l~~L 459 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--IS-KFPKELFSTGSPL 459 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--CC-SCCTHHHHTTCCC
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--cC-cCCHHHHccCCCC
Confidence 6666655 5555555443 566666654 11 22333344 55566666666662 22 33332 3446677
Q ss_pred cEEEeccCCCCCCcccCcCCCC------CCccEEEEecccCCCCCCCCCC--CCcccceeEEEcccccCceeeeeCCCCC
Q 010381 355 EWLKLVNESKPSRMVLSEYQFP------PSLTHLSLSNTELKEDPMPTLE--KLPYVQVLKLKQNSYLGRKLACVGSGGF 426 (512)
Q Consensus 355 ~~L~l~~~~~p~L~~l~~~~lp------~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 426 (512)
+.|++++|.+..+..-.+...+ ++|+.|++++|.++ ..|..+. .+++|+.|++++|.+.+ .+.. +..+
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~--~~~l 535 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ--PLNS 535 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG--GGGC
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh--hhcC
Confidence 7777776654321110111110 27888888888876 4555665 78888888888888776 3332 5678
Q ss_pred ccccEEEecC------CCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 427 PELKVLHLKS------MYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 427 ~~L~~L~L~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++|+.|++++ +.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++|+
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 8888888843 334456777778888888888888875 77777654 788888888885
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-28 Score=243.30 Aligned_cols=300 Identities=19% Similarity=0.188 Sum_probs=187.6
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L 236 (512)
..++++.+..+....++... .+++|++|.+.++.+. .+ ...+..+++|++|++++|.++.++ ..++.+++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 34555555533333333332 4555555555555443 22 212255555555555555555332 334555555
Q ss_pred CeeeecCCCCcccChh-hhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC
Q 010381 237 KYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP 314 (512)
Q Consensus 237 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~ 314 (512)
++|++++|.++.+|.. ++++++|++|++++|.+..++. .+..+++|++|++++|.+... .++.+++|+.+++.+
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~- 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY- 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS-
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc-
Confidence 5555555555555544 2455555555555555544432 345555555555555554321 234445555555542
Q ss_pred CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCC
Q 010381 315 ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPM 394 (512)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~ 394 (512)
.....+....+|+.|+++++. ...++. ...++|+.|++++|.+.... ++..+ ++|++|++++|.+.+..+
T Consensus 196 --n~l~~~~~~~~L~~L~l~~n~---l~~~~~--~~~~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 196 --NLLSTLAIPIAVEELDASHNS---INVVRG--PVNVELTILKLQHNNLTDTA--WLLNY-PGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp --SCCSEEECCSSCSEEECCSSC---CCEEEC--CCCSSCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCEEES
T ss_pred --ccccccCCCCcceEEECCCCe---eeeccc--cccccccEEECCCCCCcccH--HHcCC-CCccEEECCCCcCCCcCh
Confidence 112223344566666666662 111121 22467888888888776544 67788 999999999999887778
Q ss_pred CCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCC
Q 010381 395 PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCI 474 (512)
Q Consensus 395 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l 474 (512)
..++.+++|++|++++|.+.+.. .. ...+++|++|++++| .++.+|..+..+++|+.|++++|+ ++.+| +..+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~--~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~ 338 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALN--LY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTH 338 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEE--CS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTT
T ss_pred hHccccccCCEEECCCCcCcccC--cc-cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC--chhh
Confidence 88999999999999999886532 22 567899999999995 677888778889999999999998 55555 6789
Q ss_pred CCCcEEEccCCh
Q 010381 475 QSLRKLDLHWPQ 486 (512)
Q Consensus 475 ~~L~~L~l~~~~ 486 (512)
++|+.|++++|+
T Consensus 339 ~~L~~L~l~~N~ 350 (390)
T 3o6n_A 339 HTLKNLTLSHND 350 (390)
T ss_dssp CCCSEEECCSSC
T ss_pred ccCCEEEcCCCC
Confidence 999999999987
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=234.60 Aligned_cols=298 Identities=14% Similarity=0.182 Sum_probs=242.0
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..++++.+..+..... +.. .+++|++|.+.++.+. .++.+ ..+++|++|++++|.++.++ .+..+++|++|
T Consensus 44 ~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~-----~~~~~-~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQIT-----DISPL-SNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp TTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred ccccEEEEeCCccccc-hhhhhcCCccEEEccCCccc-----cchhh-hcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 6788999986665554 334 8999999999999876 44444 99999999999999998775 58999999999
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCcc
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~ 317 (512)
++++|.++.+|. +..+++|++|++++| .+..+ ..+..+++|++|++++|.+....+ +..+++|+.+++++ .+..
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 999999998876 889999999999999 44554 458999999999999998864333 88999999999986 3233
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
.+ .+..+++|+.|+++++. .... +. +..+++|+.|++++|.+..+. .+..+ ++|++|++++|.+++ .+.+
T Consensus 192 ~~-~~~~l~~L~~L~l~~n~--l~~~-~~-~~~~~~L~~L~l~~n~l~~~~--~~~~l-~~L~~L~l~~n~l~~--~~~~ 261 (347)
T 4fmz_A 192 IS-PLASLTSLHYFTAYVNQ--ITDI-TP-VANMTRLNSLKIGNNKITDLS--PLANL-SQLTWLEIGTNQISD--INAV 261 (347)
T ss_dssp CG-GGGGCTTCCEEECCSSC--CCCC-GG-GGGCTTCCEEECCSSCCCCCG--GGTTC-TTCCEEECCSSCCCC--CGGG
T ss_pred cc-cccCCCccceeecccCC--CCCC-ch-hhcCCcCCEEEccCCccCCCc--chhcC-CCCCEEECCCCccCC--ChhH
Confidence 33 38889999999999983 2222 22 778999999999999887654 36778 999999999999875 3568
Q ss_pred CCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCC
Q 010381 398 EKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSL 477 (512)
Q Consensus 398 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 477 (512)
..+++|++|++++|.+.+. .. +..+++|+.|++++|......+..++.+++|+.|++++|+ ++.++. +..+++|
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKM 335 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GG--GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTC
T ss_pred hcCCCcCEEEccCCccCCC--hh--hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhcc
Confidence 8999999999999988764 22 5788999999999976544555667889999999999998 455544 8889999
Q ss_pred cEEEccCCh
Q 010381 478 RKLDLHWPQ 486 (512)
Q Consensus 478 ~~L~l~~~~ 486 (512)
++|++++|+
T Consensus 336 ~~L~l~~N~ 344 (347)
T 4fmz_A 336 DSADFANQV 344 (347)
T ss_dssp SEESSSCC-
T ss_pred ceeehhhhc
Confidence 999999997
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=250.68 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=90.5
Q ss_pred cCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee-eeCCCCc
Q 010381 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAM 450 (512)
Q Consensus 372 ~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l 450 (512)
+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+...+.. +..+++|++|++++|. ++.+ |..+..+
T Consensus 417 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 493 (570)
T 2z63_A 417 FLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNSL 493 (570)
T ss_dssp TTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred hhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhhcc
Confidence 4566 788888888888877777888889999999999988874333333 7889999999999964 5544 7778899
Q ss_pred cccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 451 PKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 451 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++|+.|++++|......|..+..+++|++|++++|+
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999999999997555555668899999999999975
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=244.29 Aligned_cols=290 Identities=20% Similarity=0.179 Sum_probs=237.8
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccChh-hhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~ 257 (512)
-.++++.|++.++.+. .+ +..|.++++|++|++++|.++.+ |..|+++++|++|++++|.++.+|.. +++++
T Consensus 30 ~~~~l~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 30 IPTETRLLDLGKNRIK-----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCTTCSEEECCSSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCcEEECCCCccc-----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 4568999999999886 34 44449999999999999999854 78899999999999999999988865 68999
Q ss_pred CCcEEecCCcccccc-chhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCc-hhcCCCCCCCeEEEe
Q 010381 258 NLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTP-DILGRLPNIQTLRIS 334 (512)
Q Consensus 258 ~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~-~~l~~l~~L~~L~l~ 334 (512)
+|++|++++|.+..+ |..+.++++|++|++++|.+.+..|..+.++++|+.|++.+ .+...+ ..+..+++|+.|+++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 999999999988766 45688999999999999999877788999999999999986 333333 458899999999999
Q ss_pred ccchhhhhhHHHhccCCCCCcEEEeccCCC----CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEc
Q 010381 335 GDLSYYQSRVSKSLCKLQKLEWLKLVNESK----PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQ 410 (512)
Q Consensus 335 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~----p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 410 (512)
++ ......+..+..+++|+.|++++|.. |. ..... .+|++|++++|.++..++..+..+++|+.|++++
T Consensus 185 ~n--~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 185 HL--NINAIRDYSFKRLYRLKVLEISHWPYLDTMTP----NCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp SC--CCCEECTTCSCSCTTCCEEEEECCTTCCEECT----TTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CC--cCcEeChhhcccCcccceeeCCCCccccccCc----ccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 98 34444445788899999999998643 33 34445 6999999999998865556788999999999999
Q ss_pred ccccCceeeeeCCCCCccccEEEecCCCCccee-eeCCCCccccceeeecCCcccCCCCc-ccCCCCCCcEEEccCCh
Q 010381 411 NSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 486 (512)
|.+.+..... +..+++|+.|+|++| .+..+ +..+..+++|+.|++++|. ++.+|. .+..+++|++|++++|+
T Consensus 258 n~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 258 NPISTIEGSM--LHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SCCCEECTTS--CTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CcCCccChhh--ccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCC
Confidence 9886544332 678999999999996 45544 6678899999999999997 455544 57889999999999986
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=250.24 Aligned_cols=310 Identities=16% Similarity=0.130 Sum_probs=209.7
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFL 235 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~ 235 (512)
.+..++++.++.+.....++.. .+++|++|.+++|.+. .+ +..|..+++|++|++++|.++.+|.. .+++
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccC-----CcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 3478899999977776655444 8899999999999876 34 44448999999999999999888876 7899
Q ss_pred cCeeeecCCCCcc--cChhhhcCcCCcEEecCCccccccchhhhccccC--ceeecCCccc--CCCCCCCCCCCC-----
Q 010381 236 LKYLKLNIPSLKC--LPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKL--MHLNFGSITL--PAPPTNYSSSLK----- 304 (512)
Q Consensus 236 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~~~l~----- 304 (512)
|++|++++|.++. +|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..++.++
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~ 169 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEE
Confidence 9999999999884 67889999999999999887754 345566666 7777776666 444444444422
Q ss_pred ------------------------------------------------------------------------------CC
Q 010381 305 ------------------------------------------------------------------------------NL 306 (512)
Q Consensus 305 ------------------------------------------------------------------------------~L 306 (512)
+|
T Consensus 170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L 249 (520)
T 2z7x_B 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249 (520)
T ss_dssp EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence 23
Q ss_pred CeeecCC-CC-ccCchhc-----------------------------------------------------CCCCCCCeE
Q 010381 307 IFVSALH-PI-SCTPDIL-----------------------------------------------------GRLPNIQTL 331 (512)
Q Consensus 307 ~~l~l~~-~~-~~~~~~l-----------------------------------------------------~~l~~L~~L 331 (512)
+.+++++ .+ +..|..+ ..+++|++|
T Consensus 250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L 329 (520)
T 2z7x_B 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329 (520)
T ss_dssp SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred cEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEE
Confidence 3333321 00 1222222 334444444
Q ss_pred EEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc--CcCCCCCCccEEEEecccCCCCCC-CCCCCCcccceeEE
Q 010381 332 RISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL--SEYQFPPSLTHLSLSNTELKEDPM-PTLEKLPYVQVLKL 408 (512)
Q Consensus 332 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l--~~~~lp~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l 408 (512)
++++| ......|..+..+++|+.|++++|.+..+..+ .+..+ ++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus 330 ~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 330 DFSNN--LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp ECCSS--CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred EeECC--ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 44444 23333444445555555555555444321110 24556 777777777777665333 34667777777777
Q ss_pred EcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcc-cCCCCCCcEEEccCCh
Q 010381 409 KQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEE-LWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 486 (512)
++|.+.+..+.. + .++|+.|++++| .++.+|..+..+++|+.|++++|. ++.+|.. +..+++|++|++++|+
T Consensus 407 s~N~l~~~~~~~--l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 407 SSNILTDTIFRC--L--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CSSCCCGGGGGS--C--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCcchhhh--h--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 777766544322 1 168999999985 677888877899999999999997 5678876 8899999999999976
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=249.08 Aligned_cols=269 Identities=18% Similarity=0.134 Sum_probs=186.0
Q ss_pred eeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCcccccc-chhhhccccCceeecCC
Q 010381 212 YLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~ 289 (512)
.|+.|++++|.++.++ ..++.+++|++|++++|.++.+|..++.+++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 5666666666666444 347788889999999998888888888889999999999887766 45688889999999998
Q ss_pred cccCCCCCCC-CCCCCCCCeeecCC-CCccC---chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC
Q 010381 290 ITLPAPPTNY-SSSLKNLIFVSALH-PISCT---PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 290 ~~~~~~~p~~-~~~l~~L~~l~l~~-~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
|.+.+.+|.. ++++++|+.+++++ .+... +..++.+++|++|++++| ......+..+..+++|+.|++++|.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN--EPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC--SCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC--cCCcCCHHHhcCCccCCeEECCCCcC
Confidence 8887666654 88889999998885 22222 456788889999999888 34455566778888888888888754
Q ss_pred CCCccc-CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeee-eCCCCCccccEEEecCCCCcce
Q 010381 365 PSRMVL-SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLAC-VGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 365 p~L~~l-~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
.....- .+..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+.. ..+..+++|++|++++|.....
T Consensus 413 ~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 413 KVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp ECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 211000 35667 78888888888777777777777888888888877776533211 1145667777777777533223
Q ss_pred eeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccC
Q 010381 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHW 484 (512)
Q Consensus 443 l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 484 (512)
.|..++.+++|+.|++++|......|..+..+++| .|++++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 34556667777777777766544444444444444 343333
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=249.49 Aligned_cols=309 Identities=16% Similarity=0.130 Sum_probs=211.8
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFL 235 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~ 235 (512)
.+..++++.+..+.....++.. .+++|++|.+++|.+. .+ +..|..+++|++|++++|.++.+|.. .+++
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-----cCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 3467788888866666655444 7888888888888765 33 34347788888888888888877766 7788
Q ss_pred cCeeeecCCCCccc--ChhhhcCcCCcEEecCCccccccchhhhccccC--ceeecCCccc--CCCCCCCCCCCC-----
Q 010381 236 LKYLKLNIPSLKCL--PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKL--MHLNFGSITL--PAPPTNYSSSLK----- 304 (512)
Q Consensus 236 L~~L~l~~~~i~~l--p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~~~l~----- 304 (512)
|++|++++|.++.+ |..++++++|++|++++|.+... .+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~ 200 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence 88888888888754 46788888888888888766542 23344444 6666665555 333333332221
Q ss_pred ----------------------------------------------------------------------------CCCe
Q 010381 305 ----------------------------------------------------------------------------NLIF 308 (512)
Q Consensus 305 ----------------------------------------------------------------------------~L~~ 308 (512)
+|+.
T Consensus 201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 2222
Q ss_pred eecCC-CC-ccCchhc-----------------------------------------------------CCCCCCCeEEE
Q 010381 309 VSALH-PI-SCTPDIL-----------------------------------------------------GRLPNIQTLRI 333 (512)
Q Consensus 309 l~l~~-~~-~~~~~~l-----------------------------------------------------~~l~~L~~L~l 333 (512)
|++++ .+ +..|..+ +.+++|+.|++
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 360 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEEC
Confidence 22221 00 1111111 45667777777
Q ss_pred eccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc--CcCCCCCCccEEEEecccCCC-CCCCCCCCCcccceeEEEc
Q 010381 334 SGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL--SEYQFPPSLTHLSLSNTELKE-DPMPTLEKLPYVQVLKLKQ 410 (512)
Q Consensus 334 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l--~~~~lp~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~ 410 (512)
+++ ......|..+..+++|+.|++++|.+..+..+ .+..+ ++|+.|++++|.+.+ .+...+..+++|++|++++
T Consensus 361 ~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 361 TQN--VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp CSS--CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred CCC--ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 776 34445566677777777777777765433221 35677 888888888888876 3334577888899999998
Q ss_pred ccccCceeeeeCCCCC-ccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcc-cCCCCCCcEEEccCCh
Q 010381 411 NSYLGRKLACVGSGGF-PELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEE-LWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 486 (512)
|.+.+..+. .+ ++|++|++++| .++.+|.....+++|+.|++++|. ++.+|.. +..+++|+.|++++|+
T Consensus 438 n~l~~~~~~-----~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 438 NMLTGSVFR-----CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SCCCGGGGS-----SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCcchhh-----hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 888765433 33 69999999995 778899888899999999999997 5678887 8999999999999986
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=254.78 Aligned_cols=295 Identities=15% Similarity=0.125 Sum_probs=233.2
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCc-CC--ccCccccCc------cccCeeeecCCCCcccCh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAV-LD--QFPPGLENL------FLLKYLKLNIPSLKCLPS 251 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~lp~~l~~l------~~L~~L~l~~~~i~~lp~ 251 (512)
.+++|++|.+.+|...+ .++..+.++++|++|++++|. ++ .+|..++.+ ++|++|++++|.++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp GCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred ccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence 47889999999987653 454434889999999999998 87 488888776 899999999999999998
Q ss_pred --hhhcCcCCcEEecCCcccc-ccchhhhccccCceeecCCcccCCCCCCCCCCCCC-CCeeecCC-CCccCchhcCCCC
Q 010381 252 --QLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKN-LIFVSALH-PISCTPDILGRLP 326 (512)
Q Consensus 252 --~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~l~l~~-~~~~~~~~l~~l~ 326 (512)
.++++++|++|++++|.+. .+| .++.+++|++|++++|.+. .+|..++++++ |+.|++++ .+..+|..++.+.
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~ 400 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTC
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcc
Confidence 8999999999999999887 888 8889999999999999887 88888999999 99999986 4456666666654
Q ss_pred --CCCeEEEeccchhhhhhHHHhcc-------CCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 327 --NIQTLRISGDLSYYQSRVSKSLC-------KLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 327 --~L~~L~l~~~~~~~~~~l~~~l~-------~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
+|+.|++++| ......|..+. .+++|+.|++++|.+..+..-.+..+ ++|++|++++|.++..+...+
T Consensus 401 l~~L~~L~Ls~N--~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 401 VSVMSAIDFSYN--EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp SSCEEEEECCSS--CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT-CCCSEEECCSSCCSBCCSSSS
T ss_pred cCccCEEECcCC--cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC-CCCCEEECCCCCCCCcCHHHh
Confidence 8999999998 46666676676 77799999999987654321123457 899999999998874333333
Q ss_pred CCC-------cccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeec------CCccc
Q 010381 398 EKL-------PYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVD------PCAYL 464 (512)
Q Consensus 398 ~~l-------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~------~c~~l 464 (512)
... ++|+.|++++|.+.. .+.......+++|+.|+|++| .++.+|..+..+++|+.|+++ +|...
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence 332 389999999998873 333220138899999999995 566688888899999999995 45667
Q ss_pred CCCCcccCCCCCCcEEEccCCh
Q 010381 465 RKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 465 ~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
..+|..+..+++|++|++++|.
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSC
T ss_pred ccChHHHhcCCCCCEEECCCCc
Confidence 7888889999999999999987
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=236.24 Aligned_cols=283 Identities=15% Similarity=0.114 Sum_probs=238.1
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccC-hhhhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLP-SQLCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~ 257 (512)
.+++++.|.+.++... .+ ..++..+++|++|++++|.++.++ ..++.+++|++|++++|.++.+| ..+++++
T Consensus 43 ~l~~l~~l~l~~~~l~-----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchh-----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 6799999999998775 45 555589999999999999999665 58999999999999999999665 4589999
Q ss_pred CCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEecc
Q 010381 258 NLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~ 336 (512)
+|++|++++|.+..+|.. +.++++|++|++++|.+.+..|..++++++|+.|+++++ .-....++.+++|+.|+++++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYN 196 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccc
Confidence 999999999999999977 489999999999999998777788999999999999863 111224678899999999988
Q ss_pred chhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc
Q 010381 337 LSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 337 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
. .. .+...++|+.|++++|.+..+. .... ++|+.|++++|.+++ ++.++.+++|++|++++|.+.+.
T Consensus 197 ~--l~-----~~~~~~~L~~L~l~~n~l~~~~---~~~~-~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 197 L--LS-----TLAIPIAVEELDASHNSINVVR---GPVN-VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp C--CS-----EEECCSSCSEEECCSSCCCEEE---CCCC-SSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred c--cc-----ccCCCCcceEEECCCCeeeecc---cccc-ccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCc
Confidence 3 21 2345678999999998775421 1234 899999999999875 35788999999999999998765
Q ss_pred eeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 417 KLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 417 ~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.+.. +..+++|+.|++++ +.++.++.....+++|+.|++++|. ++.+|..+..+++|++|++++|+
T Consensus 264 ~~~~--~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 264 MYHP--FVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ESGG--GTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred ChhH--ccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 4443 68899999999999 5688888888899999999999996 66888888899999999999997
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-28 Score=255.10 Aligned_cols=319 Identities=18% Similarity=0.107 Sum_probs=212.7
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~ 234 (512)
.+..++++.+..+.....++.. .+++|++|++++|.+. .+ +..|.++++|++|++++|.++ ..|..++.++
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-----WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-----eeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 4567888888877776665544 8888888888888765 33 443488888888888888877 4466788888
Q ss_pred ccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCC--eee
Q 010381 235 LLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLI--FVS 310 (512)
Q Consensus 235 ~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~--~l~ 310 (512)
+|++|++++|.++.+ |..++++++|++|++++|.+..++ +.+..+++|++|++++|.+.+..|..++.+++|+ .++
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 888888888888865 556778888888888888776652 2344477788888877777655555566666665 454
Q ss_pred cCC-CCccC-----------------------------------------------------------------------
Q 010381 311 ALH-PISCT----------------------------------------------------------------------- 318 (512)
Q Consensus 311 l~~-~~~~~----------------------------------------------------------------------- 318 (512)
+++ .+...
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 443 11111
Q ss_pred -----chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCC
Q 010381 319 -----PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDP 393 (512)
Q Consensus 319 -----~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~ 393 (512)
+..++.+++|+.|+++++ ....+|..+..+++|+.|++++|.+..+..-.+..+ ++|++|++++|.+.+..
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n---~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTAT---HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTS---CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCBC
T ss_pred cCccCHHHhccccCCCEEeccCC---ccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCccccc
Confidence 112455566666666665 233555556666666666666665432211155666 77778888777766443
Q ss_pred C-CCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCc-cc
Q 010381 394 M-PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPE-EL 471 (512)
Q Consensus 394 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~~ 471 (512)
+ ..++.+++|++|++++|.+.+.......+..+++|++|++++|......+..+..+++|+.|++++|......|. .+
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 3 347778888888888777765432111157788888888888543333455677788888888888876555444 37
Q ss_pred CCCCCCcEEEccCCh
Q 010381 472 WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 472 ~~l~~L~~L~l~~~~ 486 (512)
..+++|++|++++|.
T Consensus 422 ~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTCTTCCEEECTTCC
T ss_pred hCcccCCEEECCCCc
Confidence 788888888888885
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=254.85 Aligned_cols=314 Identities=18% Similarity=0.171 Sum_probs=250.0
Q ss_pred CCCceeEEEEEecCCcc-ccCCC-CCCCeeEEEEecCC-cch-hhhcchhH---HhcCCCeeEEEEecCCcCCccCc--c
Q 010381 159 PMANVKRCFILKDLIDF-FPSEY-SDMYLQSFLNHSSE-SDR-LARIDCEN---FCKKFKYLRVLDLGSAVLDQFPP--G 229 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~-~~~~~-~~~~Lr~L~l~~~~-~~~-~~~~~~~~---~~~~~~~L~~L~l~~~~l~~lp~--~ 229 (512)
....++.|.+..+.... +|... .+++|+.|.+.+|. +.. .....+.. .+..+++|++|++++|.++.+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 45779999999776444 44334 89999999999997 542 11111211 12566799999999999999999 8
Q ss_pred ccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhcccc-CceeecCCcccCCCCCCCCCCCCC--C
Q 010381 230 LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQK-LMHLNFGSITLPAPPTNYSSSLKN--L 306 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~p~~~~~l~~--L 306 (512)
++++++|++|++++|.++.+| .++.+++|+.|++++|.+..+|..+.++++ |++|++++|.+. .+|..+..+.. |
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 999999999999999999999 899999999999999999899999999999 999999999987 88988887765 9
Q ss_pred CeeecCC-CCccCc----hhcC--CCCCCCeEEEeccchhhhhhHHHhc-cCCCCCcEEEeccCCCCCCcccCcC-----
Q 010381 307 IFVSALH-PISCTP----DILG--RLPNIQTLRISGDLSYYQSRVSKSL-CKLQKLEWLKLVNESKPSRMVLSEY----- 373 (512)
Q Consensus 307 ~~l~l~~-~~~~~~----~~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~l~~~~~p~L~~l~~~----- 373 (512)
+.|++++ .+...+ ..++ .+++|+.|++++|. .. .+|..+ ..+++|+.|++++|.+..+.. ++.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~--L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~~~~~~ 722 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE--IQ-KFPTELFATGSPISTIILSNNLMTSIPE-NSLKPKDG 722 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC--CC-SCCHHHHHTTCCCSEEECCSCCCSCCCT-TSSSCTTS
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc--CC-ccCHHHHccCCCCCEEECCCCcCCccCh-HHhccccc
Confidence 9999986 222222 2223 44589999999983 33 566554 488999999999987643221 222
Q ss_pred ---CCCCCccEEEEecccCCCCCCCCCC--CCcccceeEEEcccccCceeeeeCCCCCccccEEEecC------CCCcce
Q 010381 374 ---QFPPSLTHLSLSNTELKEDPMPTLE--KLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKS------MYWLDE 442 (512)
Q Consensus 374 ---~lp~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~l~~ 442 (512)
.+ ++|+.|+|++|.++ ..|..+. .+++|+.|+|++|.+.+ .+.. +..+++|+.|+|++ |.....
T Consensus 723 ~l~nl-~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~--l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 723 NYKNT-YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ--PLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CCTTG-GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG--GGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ccccc-CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh--hhcCCCCCEEECCCCCCccccccccc
Confidence 22 39999999999997 5666776 89999999999999987 3333 67899999999976 444557
Q ss_pred eeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 443 l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|..+..+++|+.|++++|.. +.+|..+. ++|+.|+|++|+
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 888899999999999999986 88998765 799999999997
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=258.78 Aligned_cols=314 Identities=12% Similarity=0.101 Sum_probs=248.3
Q ss_pred CCceeEEEEEecCCcc------------------ccCCC---CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEe
Q 010381 160 MANVKRCFILKDLIDF------------------FPSEY---SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDL 218 (512)
Q Consensus 160 ~~~~r~l~l~~~~~~~------------------~~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 218 (512)
...++.|.+..+.... +|... .+++|+.|.+.+|.... .++..+.++++|++|++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEEC
Confidence 4678999999777665 45443 58999999999987653 45444489999999999
Q ss_pred cCCc-CC--ccCccccCcc-------ccCeeeecCCCCcccCh--hhhcCcCCcEEecCCccccccchhhhccccCceee
Q 010381 219 GSAV-LD--QFPPGLENLF-------LLKYLKLNIPSLKCLPS--QLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLN 286 (512)
Q Consensus 219 ~~~~-l~--~lp~~l~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 286 (512)
++|. ++ .+|..++.+. +|++|++++|.++.+|. .++++++|++|++++|.+..+| .++++++|++|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence 9998 77 4887776665 99999999999999998 8999999999999999888888 789999999999
Q ss_pred cCCcccCCCCCCCCCCCCC-CCeeecCC-CCccCchhcCCCCC--CCeEEEeccchhhhhhHH---Hhcc--CCCCCcEE
Q 010381 287 FGSITLPAPPTNYSSSLKN-LIFVSALH-PISCTPDILGRLPN--IQTLRISGDLSYYQSRVS---KSLC--KLQKLEWL 357 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~-L~~l~l~~-~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~l~---~~l~--~l~~L~~L 357 (512)
+++|.+. .+|..+.++++ |+.|++++ .+..+|..+..+.. |+.|++++|. ....+| ..+. .+++|+.|
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK--IGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC--TTTTSSSCSSCTTTCCCCCEEEE
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc--CCCccccchhhhccccCCCcCEE
Confidence 9999987 88988999999 99999986 44566766666654 9999999983 333322 2222 34589999
Q ss_pred EeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC-------CCcccceeEEEcccccCceeeeeCCC--CCcc
Q 010381 358 KLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE-------KLPYVQVLKLKQNSYLGRKLACVGSG--GFPE 428 (512)
Q Consensus 358 ~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~ 428 (512)
++++|.+..+..-.+..+ ++|+.|+|++|.+...+...+. ++++|+.|+|++|.+.. .+.. +. .+++
T Consensus 679 ~Ls~N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~--l~~~~l~~ 754 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATG-SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDD--FRATTLPY 754 (876)
T ss_dssp ECCSSCCCSCCHHHHHTT-CCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGG--GSTTTCTT
T ss_pred EccCCcCCccCHHHHccC-CCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHH--hhhccCCC
Confidence 999987654322123467 8999999999998743333333 33499999999999873 3333 34 8999
Q ss_pred ccEEEecCCCCcceeeeCCCCccccceeeecC------CcccCCCCcccCCCCCCcEEEccCCh
Q 010381 429 LKVLHLKSMYWLDEWTMGAGAMPKLESLIVDP------CAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 429 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|+.|+|++| .++.+|..++.+++|+.|++++ |.....+|..+.++++|++|++++|.
T Consensus 755 L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 755 LSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 999999995 5667898899999999999977 66677889999999999999999997
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=232.54 Aligned_cols=281 Identities=16% Similarity=0.200 Sum_probs=237.1
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
.++++++|.+.++... .++.+ ..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++.+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-----~~~~~-~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-----SIQGI-EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred hcccccEEEEeCCccc-----cchhh-hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 6789999999998876 44555 889999999999999998777 999999999999999999886 689999999
Q ss_pred EEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhh
Q 010381 261 TLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYY 340 (512)
Q Consensus 261 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 340 (512)
+|++++|.+..++. +..+++|++|++++|.....++ .+..+++|+.+++.+........+..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~--- 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ--- 188 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC---
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc---
Confidence 99999999998877 8899999999999997665444 489999999999986212223338899999999999983
Q ss_pred hhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeee
Q 010381 341 QSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLAC 420 (512)
Q Consensus 341 ~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 420 (512)
...++. +..+++|+.|++++|.+..+. .+..+ ++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..
T Consensus 189 l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP-LASLTSLHYFTAYVNQITDIT--PVANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc-ccCCCccceeecccCCCCCCc--hhhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 222332 778999999999999887644 36678 999999999999876443 88999999999999988764 22
Q ss_pred eCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 421 VGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 421 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+..+++|+.|++++| .++.++ .+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 261 --~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 261 --VKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp --GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred --HhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 688999999999996 566665 47889999999999998766777788999999999999997
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=246.71 Aligned_cols=286 Identities=17% Similarity=0.183 Sum_probs=178.9
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~ 257 (512)
.+++++.+.+.++.+. .+ +.++..+++|++|++++|.++.++ ..|+.+++|++|++++|.++.+|. .+++++
T Consensus 49 ~l~~l~~l~l~~~~l~-----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCC-----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 4455555555555443 23 333355556666666665555333 355555666666666655554433 245556
Q ss_pred CCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-Ccc-----------------C
Q 010381 258 NLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP-ISC-----------------T 318 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~-~~~-----------------~ 318 (512)
+|++|+|++|.+..+|.. ++++++|++|++++|.+.+..|..++++++|+.|+++++ +.. .
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 203 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCc
Confidence 666666666655555544 355566666666665555544555555666666655531 111 1
Q ss_pred chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC
Q 010381 319 PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE 398 (512)
Q Consensus 319 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~ 398 (512)
...+....+|+.|+++++. ...++.. ..++|+.|++++|.+.... ++..+ ++|+.|+|++|.+.+..|..++
T Consensus 204 l~~l~~~~~L~~L~ls~n~---l~~~~~~--~~~~L~~L~L~~n~l~~~~--~l~~l-~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNS---INVVRGP--VNVELTILKLQHNNLTDTA--WLLNY-PGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CSEEECCTTCSEEECCSSC---CCEEECS--CCSCCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCEEESGGGT
T ss_pred cccccCCchhheeeccCCc---ccccccc--cCCCCCEEECCCCCCCCCh--hhccC-CCCCEEECCCCccCCCCHHHhc
Confidence 1222333444555555442 1111111 1246777777776665433 66778 8999999999998877788888
Q ss_pred CCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCc
Q 010381 399 KLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLR 478 (512)
Q Consensus 399 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 478 (512)
.+++|+.|++++|.+.+. ... ...+++|+.|+|++| .+..+|..++.+++|+.|++++|. +..+| +..+++|+
T Consensus 276 ~l~~L~~L~Ls~N~l~~l--~~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 276 KMQRLERLYISNNRLVAL--NLY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLK 348 (597)
T ss_dssp TCSSCCEEECTTSCCCEE--ECS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCS
T ss_pred CccCCCEEECCCCCCCCC--Ccc-cccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCC
Confidence 999999999998888663 222 567899999999985 566788777889999999999988 44554 67889999
Q ss_pred EEEccCCh
Q 010381 479 KLDLHWPQ 486 (512)
Q Consensus 479 ~L~l~~~~ 486 (512)
.|++++|+
T Consensus 349 ~L~l~~N~ 356 (597)
T 3oja_B 349 NLTLSHND 356 (597)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 99999987
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=251.61 Aligned_cols=178 Identities=14% Similarity=0.089 Sum_probs=102.1
Q ss_pred CCCCCCeeecCC-CCcc---CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCC------------
Q 010381 302 SLKNLIFVSALH-PISC---TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKP------------ 365 (512)
Q Consensus 302 ~l~~L~~l~l~~-~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p------------ 365 (512)
.+++|+.+++++ .+.. .+..+..+++|+.|++++|. ...+|..+..+++|+.|++++|.+.
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS---EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc---cccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 445566666654 1111 25566677777777777762 2334455566666666666664321
Q ss_pred CCccc-------------CcCCCCCCccEEEEecccCCC-CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccE
Q 010381 366 SRMVL-------------SEYQFPPSLTHLSLSNTELKE-DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431 (512)
Q Consensus 366 ~L~~l-------------~~~~lp~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 431 (512)
+|+.| .+..+ ++|++|++++|.+.+ ..+..++.+++|++|++++|.+.+..+.. +.++++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~ 501 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV--FDTLHRLQL 501 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCE
T ss_pred cCCEEECcCCCCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh--hcccccCCE
Confidence 11111 34445 556666666665544 24455566666666666666554433222 456667777
Q ss_pred EEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCC-CCcEEEccCCh
Q 010381 432 LHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQ-SLRKLDLHWPQ 486 (512)
Q Consensus 432 L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~ 486 (512)
|++++|......|..+..+++|+.|++++|. ++.+|..+..++ +|+.+++++||
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 7777654333345566667777777777776 456666666665 47777777754
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=251.03 Aligned_cols=282 Identities=17% Similarity=0.149 Sum_probs=212.1
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L 236 (512)
..++.+.+..+....++... .+++|++|.+.++.+. .+ +..|..+++|++|++++|.++.+| ..|+.+++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-----CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 56778888755566655554 7889999999988876 33 333488899999999999988555 457889999
Q ss_pred CeeeecCCCCcccChh-hhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCC---------
Q 010381 237 KYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKN--------- 305 (512)
Q Consensus 237 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~--------- 305 (512)
++|++++|.++.+|.. ++++++|++|++++|.+..+++ .++.+++|++|++++|.+.+.. ++.+++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 9999999999988876 4889999999999998877654 5888999999999998876532 333444
Q ss_pred ----------CCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCC
Q 010381 306 ----------LIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQ 374 (512)
Q Consensus 306 ----------L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~ 374 (512)
|+.|++++ .+...+. ...++|+.|++++|. ... +..+..+++|+.|++++|.+.....-.+..
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~--l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNN--LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSC--CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccccccCCchhheeeccCCccccccc--ccCCCCCEEECCCCC--CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 44455543 1112222 224689999999983 332 367889999999999998773211116778
Q ss_pred CCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccc
Q 010381 375 FPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLE 454 (512)
Q Consensus 375 lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~ 454 (512)
+ ++|+.|+|++|.+++ .+..+..+++|+.|++++|.+... +.. +..+++|+.|+|++| .+..++ +..+++|+
T Consensus 277 l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i-~~~--~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 277 M-QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERN--QPQFDRLENLYLDHN-SIVTLK--LSTHHTLK 348 (597)
T ss_dssp C-SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGG--HHHHTTCSEEECCSS-CCCCCC--CCTTCCCS
T ss_pred c-cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc-Ccc--cccCCCCCEEECCCC-CCCCcC--hhhcCCCC
Confidence 8 999999999999875 456678899999999999998743 222 467899999999996 466664 67899999
Q ss_pred eeeecCCccc
Q 010381 455 SLIVDPCAYL 464 (512)
Q Consensus 455 ~L~l~~c~~l 464 (512)
.|++++|+..
T Consensus 349 ~L~l~~N~~~ 358 (597)
T 3oja_B 349 NLTLSHNDWD 358 (597)
T ss_dssp EEECCSSCEE
T ss_pred EEEeeCCCCC
Confidence 9999999853
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=236.08 Aligned_cols=296 Identities=15% Similarity=0.082 Sum_probs=235.3
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC-cc-CccccCccccCeeeecCCCCccc-ChhhhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD-QF-PPGLENLFLLKYLKLNIPSLKCL-PSQLCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~ 257 (512)
-.+++++|+++++.+.. ..+..+.++++|++|++++|.+. .+ +..|..+++|++|++++|.++.+ |..+++++
T Consensus 28 l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 45889999999998863 22443499999999999999986 55 56799999999999999999954 77899999
Q ss_pred CCcEEecCCccccc-cchh--hhccccCceeecCCcccCCCCCCC-CCCCCCCCeeecCC-CC-ccCchhcCCC--CCCC
Q 010381 258 NLQTLQMPSSYIDQ-SPED--IWMMQKLMHLNFGSITLPAPPTNY-SSSLKNLIFVSALH-PI-SCTPDILGRL--PNIQ 329 (512)
Q Consensus 258 ~L~~L~L~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~l~l~~-~~-~~~~~~l~~l--~~L~ 329 (512)
+|++|++++|.+.. .|.. +.++++|++|++++|.+.+..|.. ++++++|+.|++++ .+ ...+..+..+ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999998865 4444 889999999999999998776766 89999999999986 22 2234445444 6788
Q ss_pred eEEEeccchhhhh--------hHHHhccCCCCCcEEEeccCCC--------------CCCcccCcC--------------
Q 010381 330 TLRISGDLSYYQS--------RVSKSLCKLQKLEWLKLVNESK--------------PSRMVLSEY-------------- 373 (512)
Q Consensus 330 ~L~l~~~~~~~~~--------~l~~~l~~l~~L~~L~l~~~~~--------------p~L~~l~~~-------------- 373 (512)
.|+++++. ... .....+..+++|+.|++++|.+ ++++.+.+.
T Consensus 184 ~L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 184 LLRLSSIT--LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEECTTCB--CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccCc--ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 99988874 111 1122344668999999999865 222222111
Q ss_pred -----------CCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcce
Q 010381 374 -----------QFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 374 -----------~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
.. ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+.. +.++++|++|++++| .++.
T Consensus 262 ~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~ 337 (455)
T 3v47_A 262 KDPDNFTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FWGLTHLLKLNLSQN-FLGS 337 (455)
T ss_dssp CCCCTTTTGGGTT-SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSS-CCCE
T ss_pred ccCcccccccccc-cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH--hcCcccCCEEECCCC-ccCC
Confidence 12 58999999999998888888999999999999999987654433 678999999999996 4565
Q ss_pred e-eeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 443 W-TMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 443 l-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+ +..++.+++|++|++++|......|..+..+++|++|++++|.
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 5 5677899999999999998666668889999999999999986
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=233.02 Aligned_cols=298 Identities=17% Similarity=0.165 Sum_probs=189.4
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..++++.+..+.....+. . .+++|++|.+.++.+. .+..+ .++++|++|++++|.++.++. +..+++|++|
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~-----~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-----DITPL-ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCCccc-----cChhh-cCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 566677776555554443 4 6677777777766654 23233 667777777777776665544 6666777777
Q ss_pred eecCCCCcccCh--------------------hhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCC
Q 010381 240 KLNIPSLKCLPS--------------------QLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNY 299 (512)
Q Consensus 240 ~l~~~~i~~lp~--------------------~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 299 (512)
++++|.++.++. .++++++|++|++++|.+..++. +..+++|++|++++|.+.+..|
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--
Confidence 776666554432 14445556666666665555432 5566666666666666544333
Q ss_pred CCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCc
Q 010381 300 SSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSL 379 (512)
Q Consensus 300 ~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L 379 (512)
++.+++|+.|++++..-.....+..+++|+.|++++|. .....+ +..+++|+.|++++|.+..+. .+..+ ++|
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l-~~L 289 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--ISNLAP--LSGLTKLTELKLGANQISNIS--PLAGL-TAL 289 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTC-TTC
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc--cccchh--hhcCCCCCEEECCCCccCccc--cccCC-Ccc
Confidence 55566666666664111222345666677777776662 222111 566677777777776665433 35566 788
Q ss_pred cEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeec
Q 010381 380 THLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVD 459 (512)
Q Consensus 380 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 459 (512)
+.|++++|.+.+..+ ++.+++|+.|++++|.+.+..+ +..+++|+.|++++| .++.++ .+..+++|+.|+++
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAG 361 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECC
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh----hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCC
Confidence 888888887765332 6778888888888887766543 356788888888885 555554 46788889999998
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 460 PCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 460 ~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|......| +..+++|+.|++++|+
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCccCccch--hhcCCCCCEEeccCCc
Confidence 887544444 7888999999998886
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=241.68 Aligned_cols=308 Identities=15% Similarity=0.135 Sum_probs=200.2
Q ss_pred eEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeee
Q 010381 164 KRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKL 241 (512)
Q Consensus 164 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l 241 (512)
+.+.++.+....+|.... ++++.|++++|.+. .+ +..+..+++|++|++++|.++.+ |..|+++++|++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 456666555555443334 89999999999886 34 33449999999999999999955 788999999999999
Q ss_pred cCCCCcccChhhhcCcCCcEEecCCccccc--cchhhhccccCceeecCCcccCCCCCCCCCCCCCC--CeeecCC-CC-
Q 010381 242 NIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ--SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL--IFVSALH-PI- 315 (512)
Q Consensus 242 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~l~l~~-~~- 315 (512)
++|.++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.+ ..+..+++| +.+++.+ .+
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 99999999877 89999999999998875 57899999999999999999865 356667777 8887764 11
Q ss_pred --ccCchhcCC--------------------------CCCCCeEEEecc------------------------------c
Q 010381 316 --SCTPDILGR--------------------------LPNIQTLRISGD------------------------------L 337 (512)
Q Consensus 316 --~~~~~~l~~--------------------------l~~L~~L~l~~~------------------------------~ 337 (512)
...+..+.. +++|+.|+++++ .
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 122222222 333333333332 1
Q ss_pred --h-----------------------hhhhhHHHhc-----cCCCCCcEEEeccCCC--C-----------CCccc----
Q 010381 338 --S-----------------------YYQSRVSKSL-----CKLQKLEWLKLVNESK--P-----------SRMVL---- 370 (512)
Q Consensus 338 --~-----------------------~~~~~l~~~l-----~~l~~L~~L~l~~~~~--p-----------~L~~l---- 370 (512)
. ...+.+|..+ .++++|+.++++.|.+ | +++.|
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCC
Confidence 0 1111122222 2222222222222211 0 01111
Q ss_pred -------CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc--eeeeeCCCCCccccEEEecCCCCcc
Q 010381 371 -------SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR--KLACVGSGGFPELKVLHLKSMYWLD 441 (512)
Q Consensus 371 -------~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~l~ 441 (512)
....+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+.. ++.+++|++|++++|....
T Consensus 312 n~l~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 312 TRMVHMLCPSKI-SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM--TTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SCCCCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH--HTTCTTCCEEECCSSCCBC
T ss_pred CccccccchhhC-CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH--HhhCCCCCEEECCCCcCCc
Confidence 01466 7888888888888877777888888888888888887652 1122 4667777777777743322
Q ss_pred eeeeC-CCCcc----------------------ccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 442 EWTMG-AGAMP----------------------KLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 442 ~l~~~-~~~l~----------------------~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.+|.. +..++ +|+.|++++|. ++.+|..+..+++|++|++++|.
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc
Confidence 25532 33344 55555555554 34566666677777777777775
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=242.19 Aligned_cols=316 Identities=19% Similarity=0.134 Sum_probs=215.1
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCcc-ccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPG-LENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~-l~~l~ 234 (512)
.+..++++.+..+.....++.. .+++|++|.+.+|.+. .+ +..|..+++|++|++++|.++.++.. ++.++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-----ccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 3468899999977776665544 8899999999998876 33 33348899999999999998866654 88999
Q ss_pred ccCeeeecCCCCc--ccChhhhcCcCCcEEecCCcc-ccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeee
Q 010381 235 LLKYLKLNIPSLK--CLPSQLCTLLNLQTLQMPSSY-IDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS 310 (512)
Q Consensus 235 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~-~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 310 (512)
+|++|++++|.++ ..|..++++++|++|++++|. ++.+| ..+.++++|++|++++|.+.+..|..++++++|+.++
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 9999999999888 456778899999999999985 67776 4688899999999999888777777776655544444
Q ss_pred cCCC-------------------------Ccc------------------------------------------------
Q 010381 311 ALHP-------------------------ISC------------------------------------------------ 317 (512)
Q Consensus 311 l~~~-------------------------~~~------------------------------------------------ 317 (512)
+... +..
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 3210 000
Q ss_pred ------------------------------------------------------------------Cchhc-CCCCCCCe
Q 010381 318 ------------------------------------------------------------------TPDIL-GRLPNIQT 330 (512)
Q Consensus 318 ------------------------------------------------------------------~~~~l-~~l~~L~~ 330 (512)
.|..+ ..+++|+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence 00000 12333333
Q ss_pred EEEeccchhhhhhHHH---hccCCCCCcEEEeccCCCCCCcc--cCcCCCCCCccEEEEecccCCCCCCCCCCCCcccce
Q 010381 331 LRISGDLSYYQSRVSK---SLCKLQKLEWLKLVNESKPSRMV--LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQV 405 (512)
Q Consensus 331 L~l~~~~~~~~~~l~~---~l~~l~~L~~L~l~~~~~p~L~~--l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 405 (512)
|++++| ...+..|. .++.+++|+.|++++|.+..+.. -.+..+ ++|+.|++++|.++ ..|..++.+++|++
T Consensus 339 L~Ls~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 339 LDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRF 414 (549)
T ss_dssp EECCSS--CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCE
T ss_pred EEccCC--ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccE
Confidence 333333 12222221 13344445555554444322110 024566 78888888888776 45666777777777
Q ss_pred eEEEcccccCcee----------------eeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCc
Q 010381 406 LKLKQNSYLGRKL----------------ACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPE 469 (512)
Q Consensus 406 L~l~~~~~~~~~~----------------~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 469 (512)
|++++|.+..... ... ...+++|++|++++| .++.+|. ...+++|+.|++++|......|.
T Consensus 415 L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp EECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred EECCCCCcccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHH
Confidence 7777776542110 000 236789999999985 6778876 46789999999999986555566
Q ss_pred ccCCCCCCcEEEccCCh
Q 010381 470 ELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 470 ~~~~l~~L~~L~l~~~~ 486 (512)
.+..+++|+.|++++|+
T Consensus 492 ~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp GGGGCTTCCEEECCSSC
T ss_pred HHhcCcccCEEEecCCC
Confidence 78999999999999986
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-26 Score=248.63 Aligned_cols=313 Identities=19% Similarity=0.165 Sum_probs=223.0
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~ 234 (512)
.+..+++|.++.+.+....+.. .+++|++|++++|.... .+ +..|.++++|++|+|++|.++ ..|+.|++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 5688999999977777765555 99999999999985432 44 444499999999999999998 4588899999
Q ss_pred ccCeeeecCCCCc-ccChh--hhcCcCCcEEecCCccccccc--hhhhccccCceeecCCcccCCCCCCCCCCC--CCCC
Q 010381 235 LLKYLKLNIPSLK-CLPSQ--LCTLLNLQTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPTNYSSSL--KNLI 307 (512)
Q Consensus 235 ~L~~L~l~~~~i~-~lp~~--~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~ 307 (512)
+|++|++++|.++ ..|.. ++++++|++|++++|.+..++ ..++++++|++|++++|.+.+..|..++.+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 9999999999998 45655 889999999999999886653 568999999999999999988778777777 7888
Q ss_pred eeecCCC-C-ccCchhcCCCCC------CCeEEEeccchhhhhhHHHh--------------------------------
Q 010381 308 FVSALHP-I-SCTPDILGRLPN------IQTLRISGDLSYYQSRVSKS-------------------------------- 347 (512)
Q Consensus 308 ~l~l~~~-~-~~~~~~l~~l~~------L~~L~l~~~~~~~~~~l~~~-------------------------------- 347 (512)
.++++.+ + ...+..++.+.+ |+.|+++++. .....+..
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 8888751 1 233344444444 8888888772 11111111
Q ss_pred ----ccC--CCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeee
Q 010381 348 ----LCK--LQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACV 421 (512)
Q Consensus 348 ----l~~--l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 421 (512)
+.. .++|+.|++++|.+..+..-.+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 333 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN- 333 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS-
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH-
Confidence 111 2567777777765532111156667 78888888888877666777778888888888877775543333
Q ss_pred CCCCCccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 422 GSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 422 ~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+.++++|+.|++++| .+..++ ..+..+++|+.|++++|. ++.++. +++|+.+++++|.
T Consensus 334 -~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 334 -FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp -CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESCC
T ss_pred -hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCCC
Confidence 567788888888875 455444 346677888888888776 333332 5556666655553
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=223.36 Aligned_cols=235 Identities=23% Similarity=0.226 Sum_probs=195.2
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
.....++.|+++++.++.+|..++++++|++|++++|.++.+|..++++++|++|++++|.+..+|..++++++|++|++
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
++|...+.+|..++.. .....++.+++|+.|++++|. . + .+|.
T Consensus 158 ~~n~~~~~~p~~~~~~-------------~~~~~~~~l~~L~~L~L~~n~--l--------------~-------~lp~- 200 (328)
T 4fcg_A 158 RACPELTELPEPLAST-------------DASGEHQGLVNLQSLRLEWTG--I--------------R-------SLPA- 200 (328)
T ss_dssp EEETTCCCCCSCSEEE-------------C-CCCEEESTTCCEEEEEEEC--C--------------C-------CCCG-
T ss_pred CCCCCccccChhHhhc-------------cchhhhccCCCCCEEECcCCC--c--------------C-------cchH-
Confidence 9998888777654331 112234556667777776661 1 1 1233
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA 447 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 447 (512)
++..+ ++|++|++++|.+.+ .+..++.+++|++|++++|.+.+..+.. ++++++|++|++++|+....+|..+
T Consensus 201 ---~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 201 ---SIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp ---GGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred ---hhcCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchhh
Confidence 56677 788888888888774 5556888999999999988887766554 6889999999999988888899888
Q ss_pred CCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 448 GAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+.+++|+.|++++|+.++.+|..+.++++|+.+++..+.
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 999999999999999999999999999999999988654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-26 Score=232.34 Aligned_cols=298 Identities=18% Similarity=0.167 Sum_probs=195.4
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..++.+.+..+....++ .. .+++|++|+++++.+. .+..+ ..+++|++|++++|.++.++. ++.+++|++|
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~-----~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT-----DITPL-KNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccC-----Cchhh-hccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 56888888866555533 34 8999999999999876 34345 999999999999999997776 9999999999
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCc
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTP 319 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~ 319 (512)
++++|.++.+|. ++++++|++|++++|.+..++. +..+++|++|++++ .+.. .+ .++++++|+.|++++..-...
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcCCCC
Confidence 999999998875 8999999999999998877764 66666666666542 2221 11 255555555555553111112
Q ss_pred hhcCCCCCCCeEEEeccchhhhhhHH--------------------HhccCCCCCcEEEeccCCCCCCcccCcCCCCCCc
Q 010381 320 DILGRLPNIQTLRISGDLSYYQSRVS--------------------KSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSL 379 (512)
Q Consensus 320 ~~l~~l~~L~~L~l~~~~~~~~~~l~--------------------~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L 379 (512)
..+..+++|+.|++++|. .....+ ..+..+++|+.|++++|.+..+. .+..+ ++|
T Consensus 193 ~~l~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~l-~~L 267 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--PLSGL-TKL 267 (466)
T ss_dssp GGGGGCTTCSEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--GGTTC-TTC
T ss_pred hhhccCCCCCEEEecCCc--ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccch--hhhcC-CCC
Confidence 234455555555555542 111111 12334444555555444443322 24455 666
Q ss_pred cEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeec
Q 010381 380 THLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVD 459 (512)
Q Consensus 380 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 459 (512)
+.|++++|.+.+..+ ++.+++|+.|++++|.+.+..+ +..+++|+.|++++| .+..++. +..+++|+.|+++
T Consensus 268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFY 339 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECC
T ss_pred CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECC
Confidence 777777666654332 5667777777777776654322 356777888888775 3444433 5677888888888
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 460 PCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 460 ~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|. ++.++ .+..+++|+.|++++|+
T Consensus 340 ~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 340 NNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 875 44443 57788888888888886
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=225.42 Aligned_cols=292 Identities=16% Similarity=0.098 Sum_probs=231.0
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..++++.+..+.....+ .. .+++|++|.+++|.+.. ++ + ..+++|++|++++|.++.++ ++.+++|++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-----~~-~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-----LD-L-SQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-----CC-C-TTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-----Ec-c-ccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 67889999876666653 44 88999999999998763 22 4 88899999999999998775 8899999999
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccC
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCT 318 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~ 318 (512)
++++|.++.+| ++.+++|++|++++|.++.++ ++.+++|++|++++|...+.+ .++.+++|+.|++++ .+...
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 99999999876 889999999999999888875 888999999999999766655 478899999999986 33444
Q ss_pred chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC
Q 010381 319 PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE 398 (512)
Q Consensus 319 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~ 398 (512)
+ ++.+++|+.|+++++. ... + .+..+++|+.|++++|.+..+ .+..+ ++|+.|++++|.+++.++..+.
T Consensus 186 ~--l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~N~l~~i---p~~~l-~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSSNKLTEI---DVTPL-TQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp C--CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCSSCCSCC---CCTTC-TTCSEEECCSSCCSCCCCTTCT
T ss_pred c--cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcCCccccc---Ccccc-CCCCEEEeeCCcCCCcCHHHCC
Confidence 3 7889999999999883 222 2 378889999999999877653 35677 8999999999998876554444
Q ss_pred CCc-------ccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC--------CCCccccceeeecCCcc
Q 010381 399 KLP-------YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG--------AGAMPKLESLIVDPCAY 463 (512)
Q Consensus 399 ~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~--------~~~l~~L~~L~l~~c~~ 463 (512)
++. +|+.|++++|...+..+ .+.+++|+.|++++|..+..+|.. +..+++|+.|++++|.
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~- 329 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE- 329 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-
T ss_pred CCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-
Confidence 443 45566666666555443 467899999999999877777642 4567888899998887
Q ss_pred cCCCCcccCCCCCCcEEEccCCh
Q 010381 464 LRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 464 l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++.++ +..+++|+.|++++|.
T Consensus 330 l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 330 LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSSC
T ss_pred ccccc--cccCCcCcEEECCCCC
Confidence 45554 8899999999999986
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=239.39 Aligned_cols=140 Identities=13% Similarity=0.069 Sum_probs=115.1
Q ss_pred eeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeee
Q 010381 163 VKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLK 240 (512)
Q Consensus 163 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~ 240 (512)
.+++.+..+....+|.. -.++++.|++++|.+. .+ +..+..+++|++|++++|.++.+ |+.|+.+++|++|+
T Consensus 33 ~~~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSIS-----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CCEEECTTSCCCSCCTT-SCTTCCEEECCSSCCC-----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCCCccCCCC-CCCCcCEEECCCCCcc-----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 37788876666664443 3489999999999886 34 33449999999999999999955 67899999999999
Q ss_pred ecCCCCcccChhhhcCcCCcEEecCCccccccc--hhhhccccCceeecCCcccCCCCCCCCCCCCCC--CeeecCC
Q 010381 241 LNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL--IFVSALH 313 (512)
Q Consensus 241 l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~l~l~~ 313 (512)
+++|.++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+... .+..+++| +.+++++
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 999999999977 8999999999999988764 7899999999999999998753 44555555 8888764
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=230.00 Aligned_cols=271 Identities=17% Similarity=0.125 Sum_probs=227.8
Q ss_pred CCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceee
Q 010381 210 FKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLN 286 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~ 286 (512)
.+.+++|++++|.++.+ |..|..+++|++|++++|.++.+ |..++++++|++|+|++|.+..+|.. +.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 36799999999999955 57899999999999999999955 77899999999999999999999865 68999999999
Q ss_pred cCCcccCCCCCCCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC
Q 010381 287 FGSITLPAPPTNYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
+++|.+.+..|..+.++++|+.|++++ .+ ...+..+..+++|+.|++++| ......+..+..+++|+.|++++|.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC--CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC--cCcccChhHhcccCCCcEEeCCCCcC
Confidence 999999888888999999999999986 22 233557889999999999999 34444456788999999999999876
Q ss_pred CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT 444 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 444 (512)
..+..-.+..+ ++|+.|++++|...+..+.......+|++|++++|.+....... +..+++|+.|+|++| .++.++
T Consensus 189 ~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~~~ 264 (477)
T 2id5_A 189 NAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYN-PISTIE 264 (477)
T ss_dssp CEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH--HTTCTTCCEEECCSS-CCCEEC
T ss_pred cEeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH--hcCccccCeeECCCC-cCCccC
Confidence 43222267788 99999999999877766666666679999999999887543222 578999999999995 466665
Q ss_pred -eCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 445 -MGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 445 -~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 457889999999999998666668889999999999999985
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=240.27 Aligned_cols=321 Identities=16% Similarity=0.113 Sum_probs=207.9
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCc-cccCccc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFL 235 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~ 235 (512)
.+..++++.+..+.....+... .+++|++|++.++.+.. ..+..+.++++|++|++++|.++.+|. .|+.+++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 3456777777766555555443 67777777777776542 113333677777777777777776665 4777777
Q ss_pred cCeeeecCCCCcccC-hhhhcCcCCcEEecCCcccccc-chhhhccccCceeecCCcccCCCCCCCC--CCCCCCCeeec
Q 010381 236 LKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSITLPAPPTNYS--SSLKNLIFVSA 311 (512)
Q Consensus 236 L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~--~~l~~L~~l~l 311 (512)
|++|++++|.++.+| ..++++++|++|++++|.+... |..++++++|++|++++|.+.+..+..+ ..+++|+.|++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 777777777777554 4567777777777777766544 3446677777777777777655444333 24567777777
Q ss_pred CC-CC-ccCchhcCCCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCC-CCccEEEEec
Q 010381 312 LH-PI-SCTPDILGRLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFP-PSLTHLSLSN 386 (512)
Q Consensus 312 ~~-~~-~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp-~~L~~L~L~~ 386 (512)
++ .+ ...+..+..+.+|+.|++.++. ......++..+ ..++|+.|++++|.+.....-++..++ ++|++|++++
T Consensus 179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 64 11 2234455667777777766653 11112222222 346888888888765321111555551 3489999999
Q ss_pred ccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcc-----eeee----CCCCccccceee
Q 010381 387 TELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD-----EWTM----GAGAMPKLESLI 457 (512)
Q Consensus 387 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~l~~----~~~~l~~L~~L~ 457 (512)
|.+.+..+..++.+++|++|++++|.+.+..+.. +.++++|+.|+++++..-. .+|. .++.+++|++|+
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhh--hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 9887777778888899999999988876544333 6778888888887643211 2332 566788888888
Q ss_pred ecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 458 VDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 458 l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+++|......|..+..+++|++|++++|.
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCc
Confidence 88887655556667788888888888774
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=238.56 Aligned_cols=317 Identities=17% Similarity=0.114 Sum_probs=165.9
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L 236 (512)
..++++.+..+......+.. .+++|++|.+.+|.+. .+ +..|..+++|++|++++|.++.++ ..++++++|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-----ccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 45556666544444433333 5566666666665544 23 222255666666666666655443 345566666
Q ss_pred CeeeecCCCCc-ccChhhhcCcCCcEEecCCccccccchh-h--hccccCceeecCCcccCCCC----------------
Q 010381 237 KYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYIDQSPED-I--WMMQKLMHLNFGSITLPAPP---------------- 296 (512)
Q Consensus 237 ~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i--~~l~~L~~L~l~~~~~~~~~---------------- 296 (512)
++|++++|.++ ..|..++++++|++|++++|.+..++.. + ..+++|++|++++|.+.+..
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 66666666555 2333455566666666666655544432 2 13355555555555544433
Q ss_pred -----------------------------------CCCCCCCCC--CCeeecCC-CC-ccCchhcCCCCCCCeEEEeccc
Q 010381 297 -----------------------------------TNYSSSLKN--LIFVSALH-PI-SCTPDILGRLPNIQTLRISGDL 337 (512)
Q Consensus 297 -----------------------------------p~~~~~l~~--L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~~ 337 (512)
|..+.+++. |+.|++++ .+ ...+..++.+++|+.|+++++
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 282 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN- 282 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-
Confidence 334444433 56666553 11 122344566666777776666
Q ss_pred hhhhhhHHHhccCCCCCcEEEeccC---------CCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEE
Q 010381 338 SYYQSRVSKSLCKLQKLEWLKLVNE---------SKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKL 408 (512)
Q Consensus 338 ~~~~~~l~~~l~~l~~L~~L~l~~~---------~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 408 (512)
......+..+..+++|+.|+++++ .+|.+....+..+ ++|++|++++|.+.+..+..+..+++|++|++
T Consensus 283 -~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 283 -NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp -CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred -ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 344444555666677777777653 2333333355677 88999999999888877777888888888888
Q ss_pred EcccccCceeeeeCCC--CCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCC-cccCCCCCCcEEEccCC
Q 010381 409 KQNSYLGRKLACVGSG--GFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLP-EELWCIQSLRKLDLHWP 485 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~ 485 (512)
++|.+....+....+. ..++|+.|++++|......|..+..+++|+.|++++|.....+| ..+..+++|++|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 8775432222110000 11344444444432211222334444444444444444333332 23344444444444444
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=243.51 Aligned_cols=310 Identities=19% Similarity=0.149 Sum_probs=240.8
Q ss_pred EEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcC-Ccc-CccccCccccCeeeecC
Q 010381 166 CFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVL-DQF-PPGLENLFLLKYLKLNI 243 (512)
Q Consensus 166 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~l-p~~l~~l~~L~~L~l~~ 243 (512)
+..+.+....+|. ..+++++|++++|.+.. ..+..|.++++|++|++++|.. ..+ |..|+++++|++|++++
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 3334344555554 67899999999998862 2233349999999999999964 455 78899999999999999
Q ss_pred CCCccc-ChhhhcCcCCcEEecCCccccc-cchh--hhccccCceeecCCcccCCCCC-CCCCCCCCCCeeecCCC-C-c
Q 010381 244 PSLKCL-PSQLCTLLNLQTLQMPSSYIDQ-SPED--IWMMQKLMHLNFGSITLPAPPT-NYSSSLKNLIFVSALHP-I-S 316 (512)
Q Consensus 244 ~~i~~l-p~~~~~l~~L~~L~L~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l~l~~~-~-~ 316 (512)
|.+..+ |..++++++|++|+|++|.+.. +|.. +.++++|++|++++|.+.+..+ ..++++++|+.|+++++ + .
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 999954 8889999999999999998865 5554 8899999999999999977554 57899999999999862 1 3
Q ss_pred cCchhcCCC--CCCCeEEEeccchhhhhhHHHhccCCCC------CcEEEeccCCCC--------------CCccc----
Q 010381 317 CTPDILGRL--PNIQTLRISGDLSYYQSRVSKSLCKLQK------LEWLKLVNESKP--------------SRMVL---- 370 (512)
Q Consensus 317 ~~~~~l~~l--~~L~~L~l~~~~~~~~~~l~~~l~~l~~------L~~L~l~~~~~p--------------~L~~l---- 370 (512)
..+..++.+ ++|+.|+++++ ......+..+..+.+ |+.|++++|.+. .+..+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAAN--SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCS--BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eCHHHcccccCCccceEECCCC--ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 344556655 89999999998 354445555555544 999999987431 11111
Q ss_pred ------------------CcCCC-CCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccE
Q 010381 371 ------------------SEYQF-PPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431 (512)
Q Consensus 371 ------------------~~~~l-p~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 431 (512)
.+..+ +++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+.. +.++++|++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~ 318 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQV 318 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--TTTCSSCCE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH--hcCCCCCCE
Confidence 01111 268999999999998888888999999999999999987654433 688999999
Q ss_pred EEecCCCCccee-eeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 432 LHLKSMYWLDEW-TMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 432 L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|++++|. ++.+ +..+..+++|+.|++++|......+..+..+++|++|++++|.
T Consensus 319 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 319 LNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EEEESCC-CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred EECCCCC-CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 9999964 5544 6788999999999999997544445568899999999999997
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=223.28 Aligned_cols=245 Identities=19% Similarity=0.233 Sum_probs=115.5
Q ss_pred eeEEEEecCCcCC---ccCccccCccccCeeeecC-CCCc-ccChhhhcCcCCcEEecCCcccc-ccchhhhccccCcee
Q 010381 212 YLRVLDLGSAVLD---QFPPGLENLFLLKYLKLNI-PSLK-CLPSQLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHL 285 (512)
Q Consensus 212 ~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L 285 (512)
+++.|+++++.++ .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555555555544 3455555555555555552 4444 45555555555555555555443 445555555555555
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCC-CC-ccCchhcCCCC-CCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccC
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALH-PI-SCTPDILGRLP-NIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE 362 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 362 (512)
++++|.+.+.+|..++++++|+.|++++ .+ +..|..++.++ +|+.|+++++ .....+|..+..++ |+.|++++|
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N--~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCC-CSEEECCSS
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC--eeeccCChHHhCCc-ccEEECcCC
Confidence 5555555444444444444444444432 11 24555666666 7778877777 33334444444443 555555554
Q ss_pred CCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcce
Q 010381 363 SKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 363 ~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
.+.....-.+..+ ++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.....
T Consensus 208 ~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 208 MLEGDASVLFGSD-KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp EEEECCGGGCCTT-SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSSEEEEE
T ss_pred cccCcCCHHHhcC-CCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCCccccc
Confidence 3210000033344 445555555544433222 2344444445555444444333222 33444444444444322223
Q ss_pred eeeCCCCccccceeeecCCccc
Q 010381 443 WTMGAGAMPKLESLIVDPCAYL 464 (512)
Q Consensus 443 l~~~~~~l~~L~~L~l~~c~~l 464 (512)
+|.. +.+++|+.+++++|+.+
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEE
T ss_pred CCCC-ccccccChHHhcCCCCc
Confidence 3332 44444444444444433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=233.82 Aligned_cols=317 Identities=18% Similarity=0.155 Sum_probs=216.6
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~ 234 (512)
.+..++++.+..+....+.... .+++|++|++++|.+. .+ +..|.++++|++|++++|.++.+| ..|+.++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 5678999999977777666554 8999999999999876 34 444499999999999999998655 7899999
Q ss_pred ccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccc--cchhhhccccCceeecCCcccCCCCCCCCCCCCCC----C
Q 010381 235 LLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQ--SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL----I 307 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L----~ 307 (512)
+|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++++++|++|++++|.+.+..|..++.+++| .
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 99999999999998776 58999999999999998865 78999999999999999998765444444444443 3
Q ss_pred eeecCCC-Cc----------------------------------------------------------------------
Q 010381 308 FVSALHP-IS---------------------------------------------------------------------- 316 (512)
Q Consensus 308 ~l~l~~~-~~---------------------------------------------------------------------- 316 (512)
.+++.++ +.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 3333210 00
Q ss_pred ------------cCchhcCCCCCCCeEEEeccchhhhhhHHHhc------------------------------------
Q 010381 317 ------------CTPDILGRLPNIQTLRISGDLSYYQSRVSKSL------------------------------------ 348 (512)
Q Consensus 317 ------------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l------------------------------------ 348 (512)
..+..+..+++|+.|+++++. ...+|..+
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT---IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCE---ECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBS
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCcc---chhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcc
Confidence 011122233444444444431 11122111
Q ss_pred ------cCCCCCcEEEeccCCC-------------CCCccc------------CcCCCCCCccEEEEecccCCCCCC-CC
Q 010381 349 ------CKLQKLEWLKLVNESK-------------PSRMVL------------SEYQFPPSLTHLSLSNTELKEDPM-PT 396 (512)
Q Consensus 349 ------~~l~~L~~L~l~~~~~-------------p~L~~l------------~~~~lp~~L~~L~L~~~~~~~~~~-~~ 396 (512)
..+++|+.|++++|.+ ++|+.| .+..+ ++|+.|++++|.+.+..+ ..
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETC-TTCCEEECTTSEEESCTTSCT
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccccccc-CCCCEEEccCCccccccchhh
Confidence 2233344444433321 122222 13345 666666666666554433 35
Q ss_pred CCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCc-ceeeeCCCCccccceeeecCCcccCCCCcccCCCC
Q 010381 397 LEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWL-DEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQ 475 (512)
Q Consensus 397 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~ 475 (512)
+..+++|++|++++|.+.+..+.. +.++++|++|++++|... ..+|..+..+++|+.|++++|......|..+..++
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTT--TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhcCCCCCEEeCcCCcccccchhh--hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 677778888888777765543332 567888888888886543 25777788888999999998886655677888889
Q ss_pred CCcEEEccCCh
Q 010381 476 SLRKLDLHWPQ 486 (512)
Q Consensus 476 ~L~~L~l~~~~ 486 (512)
+|++|++++|.
T Consensus 495 ~L~~L~l~~n~ 505 (570)
T 2z63_A 495 SLQVLNMASNQ 505 (570)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEeCCCCc
Confidence 99999998885
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-25 Score=223.07 Aligned_cols=270 Identities=19% Similarity=0.090 Sum_probs=222.4
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
.+++|++|+++++.+.. ++.+ ..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++++++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~-----~~~l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-----MTGI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCC-----CTTG-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred HcCCCCEEEccCCCccc-----Chhh-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 68999999999998763 3555 88999999999999999876 899999999999999999886 88999999
Q ss_pred EEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC--CccCchhcCCCCCCCeEEEeccch
Q 010381 261 TLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP--ISCTPDILGRLPNIQTLRISGDLS 338 (512)
Q Consensus 261 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~ 338 (512)
+|++++|.+..+| ++.+++|++|++++|.+.+ ++ ++++++|+.+++++. ++.. .++.+++|+.|+++++.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~- 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK- 181 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-
Confidence 9999999998886 8999999999999999976 33 889999999999863 1222 57889999999999983
Q ss_pred hhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCcee
Q 010381 339 YYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKL 418 (512)
Q Consensus 339 ~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 418 (512)
...+| +..+++|+.|++++|.+..+ .+..+ ++|+.|++++|.+++ .| ++.+++|+.|++++|.+.+..
T Consensus 182 --l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 182 --ITELD--VSQNKLLNRLNCDTNNITKL---DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp --CCCCC--CTTCTTCCEEECCSSCCSCC---CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred --cceec--cccCCCCCEEECcCCcCCee---ccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 33344 78899999999999987654 46788 999999999999987 33 789999999999999987753
Q ss_pred eeeCCCCCccc----------cEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCc--------ccCCCCCCcEE
Q 010381 419 ACVGSGGFPEL----------KVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPE--------ELWCIQSLRKL 480 (512)
Q Consensus 419 ~~~~~~~~~~L----------~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~--------~~~~l~~L~~L 480 (512)
.+.+++| +.|++++|..+..+| .+.+++|+.|++++|+.++.+|. .+..+++|++|
T Consensus 250 ----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 250 ----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp ----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred ----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 3445555 455566655555666 46789999999999987766654 24566788888
Q ss_pred EccCCh
Q 010381 481 DLHWPQ 486 (512)
Q Consensus 481 ~l~~~~ 486 (512)
++++|.
T Consensus 324 ~L~~N~ 329 (457)
T 3bz5_A 324 YLNNTE 329 (457)
T ss_dssp ECTTCC
T ss_pred ECCCCc
Confidence 888875
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=233.88 Aligned_cols=295 Identities=16% Similarity=0.126 Sum_probs=214.2
Q ss_pred CCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChh-hhcCcCC
Q 010381 182 DMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNL 259 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L 259 (512)
.+++++|+++++.+.. ..+..+..+++|++|++++|.++.++ ..|+.+++|++|++++|.++.+|.. ++++++|
T Consensus 25 ~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 4789999999998762 12333399999999999999999554 7899999999999999999977765 9999999
Q ss_pred cEEecCCccccc--cchhhhccccCceeecCCcccCCCCC-CCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEe
Q 010381 260 QTLQMPSSYIDQ--SPEDIWMMQKLMHLNFGSITLPAPPT-NYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRIS 334 (512)
Q Consensus 260 ~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~ 334 (512)
++|++++|.+.. .|..++++++|++|++++|...+.+| ..++++++|+.|++++ .+ ...+..++.+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 999999998874 46779999999999999998656665 5799999999999985 22 3467778888888888888
Q ss_pred ccchhhhhhHHHh-ccCCCCCcEEEeccCCCCCC--------------ccc-----------------CcCCC-------
Q 010381 335 GDLSYYQSRVSKS-LCKLQKLEWLKLVNESKPSR--------------MVL-----------------SEYQF------- 375 (512)
Q Consensus 335 ~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~~p~L--------------~~l-----------------~~~~l------- 375 (512)
.+. ...++.. +..+++|+.|++++|.+..+ +.+ .+..+
T Consensus 181 ~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 181 LSE---SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp CSB---STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred cCc---ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 873 2333433 34577788888777544221 111 00011
Q ss_pred ---------------------------------------------------CCCccEEEEecccCCCCCCCCC-CCCccc
Q 010381 376 ---------------------------------------------------PPSLTHLSLSNTELKEDPMPTL-EKLPYV 403 (512)
Q Consensus 376 ---------------------------------------------------p~~L~~L~L~~~~~~~~~~~~l-~~l~~L 403 (512)
.++|+.|++++|.+. ..|..+ +.+++|
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L 336 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSL 336 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccc
Confidence 024455555555543 233232 467888
Q ss_pred ceeEEEcccccCceeee-eCCCCCccccEEEecCCCCcceee---eCCCCccccceeeecCCcccCCCCcccCCCCCCcE
Q 010381 404 QVLKLKQNSYLGRKLAC-VGSGGFPELKVLHLKSMYWLDEWT---MGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRK 479 (512)
Q Consensus 404 ~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 479 (512)
++|++++|.+.+..+.. ..++.+++|++|++++| .++.++ ..+..+++|+.|++++|. ++.+|..+..+++|++
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRF 414 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccE
Confidence 88888888876644211 01467788888888885 555554 236778888888888886 5578887888888888
Q ss_pred EEccCCh
Q 010381 480 LDLHWPQ 486 (512)
Q Consensus 480 L~l~~~~ 486 (512)
|++++|.
T Consensus 415 L~Ls~N~ 421 (549)
T 2z81_A 415 LNLSSTG 421 (549)
T ss_dssp EECTTSC
T ss_pred EECCCCC
Confidence 8888875
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=210.48 Aligned_cols=283 Identities=14% Similarity=0.133 Sum_probs=159.1
Q ss_pred CeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCccc-ChhhhcCcCCcE
Q 010381 184 YLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQT 261 (512)
Q Consensus 184 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~ 261 (512)
+++.+.+.++... .++. .-.+.|++|++++|.++.++. .++.+++|++|++++|.++.+ |..++.+++|++
T Consensus 32 ~l~~l~~~~~~l~-----~lp~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLE-----KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCC-----SCCC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCcc-----ccCc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 5666666655543 2211 112566777777777765543 567777777777777777744 666777777777
Q ss_pred EecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-C---ccCchhcCCCCCCCeEEEeccc
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP-I---SCTPDILGRLPNIQTLRISGDL 337 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~-~---~~~~~~l~~l~~L~~L~l~~~~ 337 (512)
|++++|.++.+|..+. ++|++|++++|.+.+..+..+.++++|+.+++++. + +..+..+..+++|+.|+++++.
T Consensus 105 L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 105 LYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp EECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 7777777766665544 56777777777665444445666666666666641 1 1334455666666666666652
Q ss_pred hhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce
Q 010381 338 SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 338 ~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
...+|..+. ++|+.|++++|.+..+..-.+..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.. .
T Consensus 183 ---l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l 255 (330)
T 1xku_A 183 ---ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-V 255 (330)
T ss_dssp ---CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-C
T ss_pred ---cccCCcccc--ccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-C
Confidence 222332221 566666666655432110044555 666666666666655555556666666666666665542 2
Q ss_pred eeeeCCCCCccccEEEecCCCCcceeeeC-CC------CccccceeeecCCcccC--CCCcccCCCCCCcEEEccCC
Q 010381 418 LACVGSGGFPELKVLHLKSMYWLDEWTMG-AG------AMPKLESLIVDPCAYLR--KLPEELWCIQSLRKLDLHWP 485 (512)
Q Consensus 418 ~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~------~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~ 485 (512)
+. . +..+++|++|++++| .++.++.. +. ..+.|+.|++++|+... ..|..+..+++|+.+++++|
T Consensus 256 p~-~-l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 256 PG-G-LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CT-T-TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred Ch-h-hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 11 1 455666666666663 34444321 11 23556666666666422 23445566666666666655
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-25 Score=213.80 Aligned_cols=262 Identities=18% Similarity=0.199 Sum_probs=166.0
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCcccccc-chhhhccccCceeecCC
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~ 289 (512)
++++++++++.++.+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 56777777777776666543 567777777777775554 567777777777777766665 55677777777777777
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCcc-CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISC-TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
|.+. .+|..+. ++|+.|++++ .+.. .+..+..+++|+.|+++++.-......+..+..+++|+.|++++|.+..+
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 7764 4555544 5677777764 2222 23346677777777777763111223445566777777777777655431
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA 447 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 447 (512)
. ..++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..... +..+++|++|++++| .++.+|..+
T Consensus 187 ~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp~~l 259 (330)
T 1xku_A 187 P----QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNN-KLVKVPGGL 259 (330)
T ss_dssp C----SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSS-CCSSCCTTT
T ss_pred C----ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCC-cCccCChhh
Confidence 1 122267777777777776655666777777777777777665433222 456677777777774 556677667
Q ss_pred CCccccceeeecCCcccCCCCc-ccC------CCCCCcEEEccCCh
Q 010381 448 GAMPKLESLIVDPCAYLRKLPE-ELW------CIQSLRKLDLHWPQ 486 (512)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~lp~-~~~------~l~~L~~L~l~~~~ 486 (512)
..+++|++|++++|+ ++.+|. .+. ..++|+.+++++||
T Consensus 260 ~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 260 ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 777777777777776 333332 221 23667777777776
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-25 Score=214.22 Aligned_cols=263 Identities=17% Similarity=0.180 Sum_probs=165.9
Q ss_pred CeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchhhhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 288 (512)
++|++|++++|.++.+ |..++.+++|++|++++|.++.+ |..++++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 4566666666666544 33566666666666666666643 4456666666666666666666655443 566666666
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCC-C---ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHP-I---SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~-~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
+|.+....+..+.++++|+.|+++++ + +..+..+..+ +|+.|+++++. ...+|..+. ++|+.|++++|.+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK---LTGIPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---CSSCCSSSC--SSCSCCBCCSSCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---CCccCcccc--CCCCEEECCCCcC
Confidence 66665433334566666666666541 1 1233444455 67777777662 222333322 5778888887765
Q ss_pred CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT 444 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 444 (512)
..+..-.+..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+.. .+.. +..+++|+.|++++| .++.++
T Consensus 206 ~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~--l~~l~~L~~L~l~~N-~l~~~~ 280 (332)
T 2ft3_A 206 QAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAG--LPDLKLLQVVYLHTN-NITKVG 280 (332)
T ss_dssp CCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTT--GGGCTTCCEEECCSS-CCCBCC
T ss_pred CccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChh--hhcCccCCEEECCCC-CCCccC
Confidence 43221156777 889999999998887777778888999999999888763 2222 567888999999884 566554
Q ss_pred e-CCC------CccccceeeecCCccc--CCCCcccCCCCCCcEEEccCCh
Q 010381 445 M-GAG------AMPKLESLIVDPCAYL--RKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 445 ~-~~~------~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
. .+. ..++|+.|++.+|+.. ...|..+..+++|+.+++++|.
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 2 222 2577899999999865 4556678889999999998875
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-24 Score=225.60 Aligned_cols=320 Identities=17% Similarity=0.102 Sum_probs=214.9
Q ss_pred CCCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCc-cccCc
Q 010381 158 EPMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPP-GLENL 233 (512)
Q Consensus 158 ~~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l 233 (512)
..+..+++|.++.+.+..+++.. .+++|++|++++|.+. .+ +..|.++++|++|+|++|.++.+|. .|.++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 35678999999988888877665 8999999999999876 45 4445999999999999999998774 58999
Q ss_pred cccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccc--cchhhhccccCceeecCCcccCCCCCCCCCCCC------
Q 010381 234 FLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQ--SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLK------ 304 (512)
Q Consensus 234 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~------ 304 (512)
++|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++.+++|++|++++|.+.+..|..+..+.
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999999999999998776 48999999999999997754 577889999999999999877542221111100
Q ss_pred ----------------------------------------------C---------------------------------
Q 010381 305 ----------------------------------------------N--------------------------------- 305 (512)
Q Consensus 305 ----------------------------------------------~--------------------------------- 305 (512)
.
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 0
Q ss_pred ----------------------------------------------CCeeecCC-CCc--------------------cC
Q 010381 306 ----------------------------------------------LIFVSALH-PIS--------------------CT 318 (512)
Q Consensus 306 ----------------------------------------------L~~l~l~~-~~~--------------------~~ 318 (512)
|+.+++.+ .+. ..
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 00111000 000 00
Q ss_pred chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCC----------CCCCc--------------------
Q 010381 319 PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNES----------KPSRM-------------------- 368 (512)
Q Consensus 319 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~----------~p~L~-------------------- 368 (512)
+.....+++|+.|+++.+........+.....+.+|+.+++..+. ++.++
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 000112344444544443200111111222223333333332210 00111
Q ss_pred -----cc-------------CcCCCCCCccEEEEecccCC-CCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccc
Q 010381 369 -----VL-------------SEYQFPPSLTHLSLSNTELK-EDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL 429 (512)
Q Consensus 369 -----~l-------------~~~~lp~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 429 (512)
.+ .+..+ +.++.|++++|... ...+..+..+++|++|++++|.+.+..+.. ++++++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~--f~~l~~L 520 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSL 520 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTC
T ss_pred ccccccccccccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH--HcCCCCC
Confidence 00 23345 77888888887533 345667888899999999988886654433 6889999
Q ss_pred cEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCcccCCC-CCCcEEEccCCh
Q 010381 430 KVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPEELWCI-QSLRKLDLHWPQ 486 (512)
Q Consensus 430 ~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~L~l~~~~ 486 (512)
++|+|++| .++.++ ..+..+++|+.|++++|......|..+..+ ++|+.|++++||
T Consensus 521 ~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 521 QVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999995 566664 557889999999999998777777788887 689999999865
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=209.58 Aligned_cols=262 Identities=17% Similarity=0.181 Sum_probs=214.3
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCcccccc-chhhhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~ 288 (512)
.++++++++++.++.+|..+. ++|++|++++|.++.++ ..++++++|++|++++|.+..+ |..+.++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 378999999999999998764 68999999999999764 5799999999999999988877 6779999999999999
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCC-CCccCc-hhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALH-PISCTP-DILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~ 366 (512)
+|.+. .+|..+. ++|+.|++++ .+...+ ..+..+++|+.|+++++.-......+..+..+ +|+.|++++|.+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99986 6777665 8999999986 334444 35889999999999998411123445667777 99999999987654
Q ss_pred CcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC
Q 010381 367 RMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG 446 (512)
Q Consensus 367 L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 446 (512)
+ -..++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..... +..+++|+.|++++| .++.+|..
T Consensus 187 l----~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp~~ 259 (332)
T 2ft3_A 187 I----PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNN-KLSRVPAG 259 (332)
T ss_dssp C----CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSS-CCCBCCTT
T ss_pred c----CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCC-cCeecChh
Confidence 2 1223379999999999998888888999999999999999987654433 578899999999995 67789988
Q ss_pred CCCccccceeeecCCcccCCCCc-ccCC------CCCCcEEEccCCh
Q 010381 447 AGAMPKLESLIVDPCAYLRKLPE-ELWC------IQSLRKLDLHWPQ 486 (512)
Q Consensus 447 ~~~l~~L~~L~l~~c~~l~~lp~-~~~~------l~~L~~L~l~~~~ 486 (512)
+..+++|+.|++++|+ ++.+|. .+.. .++|+.+++++||
T Consensus 260 l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence 9999999999999998 444443 3332 5789999999998
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-25 Score=214.56 Aligned_cols=249 Identities=16% Similarity=0.214 Sum_probs=209.4
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecC-CcCC-ccCccccCccccCeeeecCCCCc-ccChhhhcCcC
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGS-AVLD-QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLN 258 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~-~~l~-~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~ 258 (512)
.+++.|.+.++.+.+ ...+ ..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..++++++
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccC--CcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 578899998887752 1123 444 8899999999995 7776 88999999999999999999998 88999999999
Q ss_pred CcEEecCCcccc-ccchhhhccccCceeecCCcccCCCCCCCCCCCC-CCCeeecCCC-C-ccCchhcCCCCCCCeEEEe
Q 010381 259 LQTLQMPSSYID-QSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLK-NLIFVSALHP-I-SCTPDILGRLPNIQTLRIS 334 (512)
Q Consensus 259 L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~l~l~~~-~-~~~~~~l~~l~~L~~L~l~ 334 (512)
|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+++++ +|+.++++++ + +..+..++.++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 999999999876 7888899999999999999999888999999998 8999999862 1 35677788887 9999999
Q ss_pred ccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEccccc
Q 010381 335 GDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYL 414 (512)
Q Consensus 335 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 414 (512)
++ ......+..+..+++|+.|++++|.+...-. .+..+ ++|++|++++|.+++..|..++.+++|++|++++|.+.
T Consensus 206 ~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 206 RN--MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SS--EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCC-TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CC--cccCcCCHHHhcCCCCCEEECCCCceeeecC-ccccc-CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 99 4666678889999999999999986642110 34567 99999999999998888989999999999999999998
Q ss_pred CceeeeeCCCCCccccEEEecCCCCcce
Q 010381 415 GRKLACVGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 415 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
+..+. ...+++|+.|++.+++.+..
T Consensus 282 ~~ip~---~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 282 GEIPQ---GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCC---STTGGGSCGGGTCSSSEEES
T ss_pred ccCCC---CccccccChHHhcCCCCccC
Confidence 76655 47899999999999775544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-24 Score=206.23 Aligned_cols=219 Identities=17% Similarity=0.192 Sum_probs=139.8
Q ss_pred CCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 182 DMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
.++++.|.+.++.+. .+ ..+ .++++|++|++++|.++.+|..++++++|++|++++|.++.+|..++++++|+
T Consensus 80 ~~~l~~L~L~~n~l~-----~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-----QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCS-----SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCch-----hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 356677777776664 34 444 56888888888888888888888888888888888888888888888888888
Q ss_pred EEecCCc-cccccchhhhc---------cccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCC
Q 010381 261 TLQMPSS-YIDQSPEDIWM---------MQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQ 329 (512)
Q Consensus 261 ~L~L~~~-~~~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~ 329 (512)
+|++++| .++.+|..++. +++|++|++++|.+. .+|..++++++|+.|++++ .+...+..++.+++|+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 8888887 55777766654 778888888887764 4555455555554444443 2233333444444444
Q ss_pred eEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEE
Q 010381 330 TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLK 409 (512)
Q Consensus 330 ~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 409 (512)
.|++++| .....+ |. ++..+ ++|++|++++|.+.+..|..++++++|++|+++
T Consensus 233 ~L~Ls~n--~~~~~~--------------------p~----~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 233 ELDLRGC--TALRNY--------------------PP----IFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp EEECTTC--TTCCBC--------------------CC----CTTCC-CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred EEECcCC--cchhhh--------------------HH----HhcCC-CCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 4444444 222222 33 44555 566666666665555555556666666666666
Q ss_pred cccccCceeeeeCCCCCccccEEEecC
Q 010381 410 QNSYLGRKLACVGSGGFPELKVLHLKS 436 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (512)
+|.+.+..+.. ++.+++|+.+.+..
T Consensus 286 ~n~~~~~iP~~--l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 286 GCVNLSRLPSL--IAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCCCCGG--GGGSCTTCEEECCG
T ss_pred CCCchhhccHH--HhhccCceEEeCCH
Confidence 66655555443 45566666665554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=207.01 Aligned_cols=287 Identities=20% Similarity=0.235 Sum_probs=164.0
Q ss_pred CCCceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCe
Q 010381 159 PMANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKY 238 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 238 (512)
.+..++.+.+..+....++. ..++|+.|.+++|.+.. ++.+ .++|++|++++|.++.+| .++.+++|++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~-----l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKA-----LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSC-----CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CcCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCc-----ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 34567777776555444322 34667777777665541 1111 256777777777766666 4667777777
Q ss_pred eeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCcc
Q 010381 239 LKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 239 L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~ 317 (512)
|++++|.++.+|..+ .+|++|++++|.+..+| .++++++|++|++++|.+.+ +|... ++|+.+++++ .+..
T Consensus 158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILEE 229 (454)
T ss_dssp EECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSS
T ss_pred EECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCCc
Confidence 777777766666432 46777777777666666 46667777777777666643 33322 3566666654 2233
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC-------Cccc--------CcCCCCCCccEE
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS-------RMVL--------SEYQFPPSLTHL 382 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~-------L~~l--------~~~~lp~~L~~L 382 (512)
++ .++.+++|+.|+++++. ...+|. ..++|+.|++++|.+.. |+.+ .+...|++|+.|
T Consensus 230 lp-~~~~l~~L~~L~l~~N~---l~~l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L 302 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNL---LKTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSC---CSSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred cc-ccCCCCCCCEEECCCCc---CCcccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEE
Confidence 33 35666666666666652 111221 12456666666554322 1111 111233556666
Q ss_pred EEecccCCCCCCCCCCCC-cccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCC
Q 010381 383 SLSNTELKEDPMPTLEKL-PYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPC 461 (512)
Q Consensus 383 ~L~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c 461 (512)
++++|.+.+ +..+ ++|++|++++|.+.+ . ...+++|++|++++| .++.+|. .+++|++|++++|
T Consensus 303 ~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-l-----p~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 303 NASSNEIRS-----LCDLPPSLEELNVSNNKLIE-L-----PALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp ECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-C-----CCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred ECcCCcCCc-----ccCCcCcCCEEECCCCcccc-c-----cccCCcCCEEECCCC-ccccccc---hhhhccEEECCCC
Confidence 666665542 1223 478888888887765 2 123688999999985 5677776 5789999999999
Q ss_pred cccC--CCCcccCCC-------------CCCcEEEccCCh
Q 010381 462 AYLR--KLPEELWCI-------------QSLRKLDLHWPQ 486 (512)
Q Consensus 462 ~~l~--~lp~~~~~l-------------~~L~~L~l~~~~ 486 (512)
.... .+|..+..+ ++|+.|++++|+
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 8666 677777777 889999999887
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=206.18 Aligned_cols=269 Identities=16% Similarity=0.124 Sum_probs=157.6
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCccc-ChhhhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCL-PSQLCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~ 257 (512)
.|+........++... .+ ..+ .++|++|++++|.++.+|. .+.++++|++|++++|.++.+ |..+++++
T Consensus 29 ~C~~~~~c~~~~~~l~-----~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-----SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp EECTTSEEECCSTTCS-----SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCeEeeCCCCCcc-----cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 4444455555555443 23 222 2478888888888876654 677888888888888888755 44577888
Q ss_pred CCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCC--CCCCCCCCCeeecCCC--CccC-chhcCCCCCCCeE
Q 010381 258 NLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTN--YSSSLKNLIFVSALHP--ISCT-PDILGRLPNIQTL 331 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~l~l~~~--~~~~-~~~l~~l~~L~~L 331 (512)
+|++|++++|.++.+|.. +.++++|++|++++|.+. .+|. .+.++++|+.|+++++ +... +..++.+++|++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 888888888877777765 677888888888888775 3333 4555555555555431 1111 2334444455555
Q ss_pred EEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcc
Q 010381 332 RISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411 (512)
Q Consensus 332 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 411 (512)
+++++ ......| . .+..+ ++|++|++++|.+.......+..+++|++|++++|
T Consensus 180 ~l~~n--~l~~~~~--------------------~----~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 180 EIDAS--DLQSYEP--------------------K----SLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEET--TCCEECT--------------------T----TTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred ECCCC--CcCccCH--------------------H----HHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 55444 1222222 2 44555 66666666666653322222334566666666666
Q ss_pred cccCceeeee-CCCCCccccEEEecCCCCcc----eeeeCCCCccccceeeecCCcccCCCCccc-CCCCCCcEEEccCC
Q 010381 412 SYLGRKLACV-GSGGFPELKVLHLKSMYWLD----EWTMGAGAMPKLESLIVDPCAYLRKLPEEL-WCIQSLRKLDLHWP 485 (512)
Q Consensus 412 ~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~ 485 (512)
.+.+..+... .....+.++.++++++.... .+|..+..+++|+.|++++|. ++.+|..+ ..+++|++|++++|
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCC
Confidence 6554322110 01234556666666643211 345556677788888888776 45666654 67788888888777
Q ss_pred h
Q 010381 486 Q 486 (512)
Q Consensus 486 ~ 486 (512)
+
T Consensus 312 ~ 312 (353)
T 2z80_A 312 P 312 (353)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=199.03 Aligned_cols=239 Identities=18% Similarity=0.141 Sum_probs=128.4
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCcccccc---chhhhccccCceeecCCc
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQS---PEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~l---p~~i~~l~~L~~L~l~~~ 290 (512)
.++.+++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 44555555555554332 4566666666666555543 45556666666666555433 344555566666666655
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC-CCccCc--hhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH-PISCTP--DILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
.+. .+|..+..+++|+.|++++ .+...+ ..+..+++|+.|+++++ ......+.
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~--------------------- 144 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNG--------------------- 144 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS--CCEECSTT---------------------
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC--cCCccchh---------------------
Confidence 543 2333333333333333332 001111 23455555666665555 12222222
Q ss_pred cccCcCCCCCCccEEEEecccCCC-CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-e
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKE-DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-M 445 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~ 445 (512)
.+..+ ++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++| .++.++ .
T Consensus 145 ---~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~ 217 (306)
T 2z66_A 145 ---IFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHN-NFFSLDTF 217 (306)
T ss_dssp ---TTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTS-CCSBCCSG
T ss_pred ---hcccC-cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH--hcCCCCCCEEECCCC-ccCccChh
Confidence 34455 666666666666543 34555666667777777766655433222 456667777777764 344443 2
Q ss_pred CCCCccccceeeecCCcccCCCCcccCCCC-CCcEEEccCCh
Q 010381 446 GAGAMPKLESLIVDPCAYLRKLPEELWCIQ-SLRKLDLHWPQ 486 (512)
Q Consensus 446 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~ 486 (512)
.+..+++|+.|++++|......|..+..++ +|++|++++|+
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 456677777777777765555666666663 77777777764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=212.12 Aligned_cols=294 Identities=17% Similarity=0.169 Sum_probs=200.1
Q ss_pred CCCCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCc-cccC
Q 010381 157 EEPMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPP-GLEN 232 (512)
Q Consensus 157 ~~~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~ 232 (512)
......+++|.++.+.+..+++.. .+++|++|++++|.+. .+ +..|.++++|++|++++|.++.+|. .|++
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-----~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-----SLALGAFSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-----EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-----CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 345578999999977777777765 8999999999999876 44 4555999999999999999997775 5899
Q ss_pred ccccCeeeecCCCCc--ccChhhhcCcCCcEEecCCccccccc-hhhhcccc----------------------------
Q 010381 233 LFLLKYLKLNIPSLK--CLPSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQK---------------------------- 281 (512)
Q Consensus 233 l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~---------------------------- 281 (512)
+++|++|++++|.++ .+|..++.+++|++|++++|.+..++ ..+..+.+
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 999999999999987 56788999999999999998775543 22222221
Q ss_pred --------------------------------------------------------------------------------
Q 010381 282 -------------------------------------------------------------------------------- 281 (512)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (512)
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence
Q ss_pred -----------------------CceeecCCcccCCCC-------------------CCCCCCCCCCCeeecCCC-C---
Q 010381 282 -----------------------LMHLNFGSITLPAPP-------------------TNYSSSLKNLIFVSALHP-I--- 315 (512)
Q Consensus 282 -----------------------L~~L~l~~~~~~~~~-------------------p~~~~~l~~L~~l~l~~~-~--- 315 (512)
|+.|++.+|.+.... +.....+++|+.+++++. +
T Consensus 307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 112222222111100 011123556666666531 0
Q ss_pred ccCchh-----------------------cCCCCCCCeEEEeccch-----------------------hhhhhHHHhcc
Q 010381 316 SCTPDI-----------------------LGRLPNIQTLRISGDLS-----------------------YYQSRVSKSLC 349 (512)
Q Consensus 316 ~~~~~~-----------------------l~~l~~L~~L~l~~~~~-----------------------~~~~~l~~~l~ 349 (512)
...+.. +..+++|+.+++..+.. ......+..+.
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 111111 22333444444433210 11111223334
Q ss_pred CCCCCcEEEeccCC-----CCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCC
Q 010381 350 KLQKLEWLKLVNES-----KPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSG 424 (512)
Q Consensus 350 ~l~~L~~L~l~~~~-----~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 424 (512)
.++.|+.|++++|. .|. .+..+ ++|+.|+|++|.+++..+..|+++++|++|+|++|.+.+..+.. +.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~----~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~ 539 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPD----IFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YK 539 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECS----CCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG--GT
T ss_pred cchhhhhhhhhhcccccccCch----hhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH--Hh
Confidence 45555556655542 233 56778 99999999999999888889999999999999999987655443 68
Q ss_pred CCccccEEEecCCCCccee-eeCCCCc-cccceeeecCCcc
Q 010381 425 GFPELKVLHLKSMYWLDEW-TMGAGAM-PKLESLIVDPCAY 463 (512)
Q Consensus 425 ~~~~L~~L~L~~~~~l~~l-~~~~~~l-~~L~~L~l~~c~~ 463 (512)
++++|++|+|++| .++.+ |..+..+ ++|+.|++++|+.
T Consensus 540 ~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 540 CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 8999999999995 45544 5667777 6899999999984
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=204.16 Aligned_cols=255 Identities=18% Similarity=0.065 Sum_probs=149.0
Q ss_pred ceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeee
Q 010381 162 NVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKL 241 (512)
Q Consensus 162 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l 241 (512)
.++.+.+..+....++... .++|+.|.+.+|.+. .++ ..+++|++|++++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~-----~lp---~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-----SLP---ALPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC-CTTCSEEEECSCCCS-----CCC---CCCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhh-CCCCcEEEecCCCCC-----CCC---CcCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 3566777655555433322 367777777777664 222 246677777777777776665 5577777777
Q ss_pred cCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchh
Q 010381 242 NIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDI 321 (512)
Q Consensus 242 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~ 321 (512)
++|.++.+|. .+++|++|++++|.++.+|.. +++|++|++++|.+.+ +|.. +.+|+.|++
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L---------- 168 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWA---------- 168 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEEC----------
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEEC----------
Confidence 7777777765 456777777777777777653 3677777777776642 3322 233444444
Q ss_pred cCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCc
Q 010381 322 LGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLP 401 (512)
Q Consensus 322 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~ 401 (512)
++| ....+| ..+++|+.|++++|.+..+. ..+ ++|+.|++++|.++. .+. .++
T Consensus 169 ------------~~N---~l~~l~---~~~~~L~~L~Ls~N~l~~l~----~~~-~~L~~L~L~~N~l~~-l~~---~~~ 221 (622)
T 3g06_A 169 ------------YNN---QLTSLP---MLPSGLQELSVSDNQLASLP----TLP-SELYKLWAYNNRLTS-LPA---LPS 221 (622)
T ss_dssp ------------CSS---CCSCCC---CCCTTCCEEECCSSCCSCCC----CCC-TTCCEEECCSSCCSS-CCC---CCT
T ss_pred ------------CCC---CCCCCc---ccCCCCcEEECCCCCCCCCC----Ccc-chhhEEECcCCcccc-cCC---CCC
Confidence 443 111122 23455555555555543311 122 566666666666543 221 235
Q ss_pred ccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEE
Q 010381 402 YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLD 481 (512)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 481 (512)
+|+.|++++|.+.+.. ..+++|+.|++++| .++.+|. .+++|+.|++++|. ++.+|..+..+++|+.|+
T Consensus 222 ~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 222 GLKELIVSGNRLTSLP------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVN 290 (622)
T ss_dssp TCCEEECCSSCCSCCC------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEE
T ss_pred CCCEEEccCCccCcCC------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEE
Confidence 6666666666654411 23466666666663 4555554 45666666666665 446666666666677776
Q ss_pred ccCCh
Q 010381 482 LHWPQ 486 (512)
Q Consensus 482 l~~~~ 486 (512)
+++|+
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 66664
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=195.46 Aligned_cols=222 Identities=22% Similarity=0.258 Sum_probs=119.8
Q ss_pred eeEEEEecCCcCCccCcc-ccCccccCeeeecCCCCccc---ChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 212 YLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCL---PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
+|++|++++|.++.+|.. ++++++|++|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 445555555555444432 34455555555555544422 34444455555555555544444444445555555555
Q ss_pred CCcccCCCCC-CCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEeccchhhhh-hHHHhccCCCCCcEEEeccCC
Q 010381 288 GSITLPAPPT-NYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRISGDLSYYQS-RVSKSLCKLQKLEWLKLVNES 363 (512)
Q Consensus 288 ~~~~~~~~~p-~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~l~~L~~L~l~~~~ 363 (512)
++|.+.+..+ ..+.++++|+.|++++ .+ ...+..+..+++|++|+++++ .... ..|..+..+++|+.|++++|.
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--SFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC--EEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC--ccccccchhHHhhCcCCCEEECCCCC
Confidence 5554433222 3444555555555543 11 122334455566666666655 2222 244556666666677766665
Q ss_pred CCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCc-cccEEEecCCC
Q 010381 364 KPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFP-ELKVLHLKSMY 438 (512)
Q Consensus 364 ~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~ 438 (512)
+..+..-.+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..++ +|++|++++|+
T Consensus 187 l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 187 LEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEECTTTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS--CCCCCTTCCEEECTTCC
T ss_pred cCCcCHHHhcCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH--HHhhhccCCEEEccCCC
Confidence 422100055666 77777777777776655556777777888888877776654433 45553 78888887753
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=196.94 Aligned_cols=282 Identities=19% Similarity=0.203 Sum_probs=204.2
Q ss_pred ceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeee
Q 010381 162 NVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKL 241 (512)
Q Consensus 162 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l 241 (512)
.++++.+..+....++. ..++|+.|.+.++.+.. ++ ..+++|++|++++|.++.+|... ++|++|++
T Consensus 72 ~l~~L~l~~~~l~~lp~--~~~~L~~L~l~~n~l~~-----lp---~~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L 138 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE--LPPHLESLVASCNSLTE-----LP---ELPQSLKSLLVDNNNLKALSDLP---PLLEYLGV 138 (454)
T ss_dssp TCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSS-----CC---CCCTTCCEEECCSSCCSCCCSCC---TTCCEEEC
T ss_pred CCCEEEecCCccccCCC--CcCCCCEEEccCCcCCc-----cc---cccCCCcEEECCCCccCcccCCC---CCCCEEEC
Confidence 45677777555544333 35789999999998762 22 33588999999999998776532 68999999
Q ss_pred cCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCch
Q 010381 242 NIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPD 320 (512)
Q Consensus 242 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~ 320 (512)
++|.++.+| .++++++|++|++++|.++.+|..+ .+|++|++++|.+.+ +| .++++++|+.+++++ .+...+.
T Consensus 139 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 139 SNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred cCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC
Confidence 999999998 6999999999999999998888644 599999999999875 66 699999999999986 3233332
Q ss_pred hcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCC
Q 010381 321 ILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKL 400 (512)
Q Consensus 321 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l 400 (512)
. .++|+.|++++|. . ..+| .+..+++|+.|++++|.+..+ ...+++|+.|++++|.+.+ .+.. +
T Consensus 213 ~---~~~L~~L~l~~n~--l-~~lp-~~~~l~~L~~L~l~~N~l~~l-----~~~~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 213 L---PLSLESIVAGNNI--L-EELP-ELQNLPFLTTIYADNNLLKTL-----PDLPPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp C---CTTCCEEECCSSC--C-SSCC-CCTTCTTCCEEECCSSCCSSC-----CSCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred C---cCcccEEECcCCc--C-Cccc-ccCCCCCCCEEECCCCcCCcc-----cccccccCEEECCCCcccc-cCcc---c
Confidence 2 3589999999983 3 3566 488999999999999876432 1122677777777776654 2222 2
Q ss_pred cccceeEEEcccccCc--eeee------e-----CCCCC-ccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCC
Q 010381 401 PYVQVLKLKQNSYLGR--KLAC------V-----GSGGF-PELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRK 466 (512)
Q Consensus 401 ~~L~~L~l~~~~~~~~--~~~~------~-----~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 466 (512)
++|++|++++|.+.+. .+.. . ++..+ ++|++|++++| .++.+|.. +++|+.|++++|. ++.
T Consensus 277 ~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~-l~~ 351 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH-LAE 351 (454)
T ss_dssp TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSC
T ss_pred CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEECCCCc-ccc
Confidence 4555555555554431 0000 0 01123 47888888884 56666643 6899999999986 567
Q ss_pred CCcccCCCCCCcEEEccCCh
Q 010381 467 LPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 467 lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|. .+++|++|++++|+
T Consensus 352 lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCC---CCTTCCEEECCSSC
T ss_pred ccc---hhhhccEEECCCCC
Confidence 887 47899999999986
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=198.05 Aligned_cols=264 Identities=15% Similarity=0.101 Sum_probs=187.2
Q ss_pred EEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecC
Q 010381 166 CFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNI 243 (512)
Q Consensus 166 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~ 243 (512)
.....+....+|. .-.+++++|.+.++.+. .+ ...+.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 36 c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 36 CKGSSGSLNSIPS-GLTEAVKSLDLSNNRIT-----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EECCSTTCSSCCT-TCCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eeCCCCCcccccc-cccccCcEEECCCCcCc-----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3334334444433 23468999999999886 34 32349999999999999999955 56799999999999999
Q ss_pred CCCcccChh-hhcCcCCcEEecCCccccccch--hhhccccCceeecCCcc-cCCCCCCCCCCCCCCCeeecCC-CC-cc
Q 010381 244 PSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPE--DIWMMQKLMHLNFGSIT-LPAPPTNYSSSLKNLIFVSALH-PI-SC 317 (512)
Q Consensus 244 ~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~l~l~~-~~-~~ 317 (512)
|.++.+|.. ++++++|++|++++|.+..+|. .+.++++|++|++++|. +....+..++++++|+.+++++ .+ ..
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 999988877 8899999999999999999987 68899999999999995 5444567899999999999985 22 33
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHh-ccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCC
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKS-LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPT 396 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~ 396 (512)
.+..++.+++|++|+++++. ...++.. +..+++|+.|++++|.+.. ..+..
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~L~~L~L~~n~l~~-------------------------~~~~~ 241 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQ---HILLLEIFVDVTSSVECLELRDTDLDT-------------------------FHFSE 241 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSC---STTHHHHHHHHTTTEEEEEEESCBCTT-------------------------CCCC-
T ss_pred CHHHHhccccCCeecCCCCc---cccchhhhhhhcccccEEECCCCcccc-------------------------ccccc
Confidence 46788999999999999983 3444443 3346666666666654432 21111
Q ss_pred ---CCCCcccceeEEEcccccCcee---eeeCCCCCccccEEEecCCCCcceeeeCC-CCccccceeeecCCcccC
Q 010381 397 ---LEKLPYVQVLKLKQNSYLGRKL---ACVGSGGFPELKVLHLKSMYWLDEWTMGA-GAMPKLESLIVDPCAYLR 465 (512)
Q Consensus 397 ---l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~ 465 (512)
....+.++.++++++.+.+... ... +..+++|+.|++++| .++.+|... +.+++|++|++++|+...
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHH-HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccchhhccccccccccCcchhhhHHH-HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 1223445566666555443211 111 356677777777774 556676553 677778888887776433
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=199.32 Aligned_cols=222 Identities=18% Similarity=0.167 Sum_probs=105.3
Q ss_pred CeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccch-hhhccccCceeec
Q 010381 211 KYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNF 287 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l 287 (512)
+++++|++++|.++.++ ..|.++++|++|++++|.++.++ ..+.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555332 44555555555555555555333 345555555555555555555543 2455555555555
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH-HhccCCCCCcEEEeccCCCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS-KSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~p~ 366 (512)
++|.+....+..+.+ +++|++|+++++ .....++ ..+.++++|+.|++++|.+..
T Consensus 144 ~~N~i~~~~~~~~~~----------------------l~~L~~L~l~~~--~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 144 RNNPIESIPSYAFNR----------------------IPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSCCCCEECTTTTTT----------------------CTTCCEEECCCC--TTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcccccCHHHhhh----------------------CcccCEeCCCCC--CCcceeCcchhhcccccCeecCCCCcCcc
Confidence 555554333333444 444444444443 1111111 123344444555554444332
Q ss_pred CcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-e
Q 010381 367 RMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-M 445 (512)
Q Consensus 367 L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~ 445 (512)
+. .+..+ ++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+..... +..+++|+.|+|++| .++.++ .
T Consensus 200 ~~--~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 200 IP--NLTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA--FDNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp CC--CCTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS--STTCTTCCEEECTTS-CCCCCCTT
T ss_pred cc--ccCCC-cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh--hcCCCCCCEEECCCC-CCCccChh
Confidence 22 23344 55555555555555444455555555555555555544332221 344555555555553 333333 2
Q ss_pred CCCCccccceeeecCCc
Q 010381 446 GAGAMPKLESLIVDPCA 462 (512)
Q Consensus 446 ~~~~l~~L~~L~l~~c~ 462 (512)
.+..+++|+.|++++|+
T Consensus 274 ~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSCTTCCEEECCSSC
T ss_pred HhccccCCCEEEcCCCC
Confidence 23445555555555544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-22 Score=200.86 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=52.8
Q ss_pred CeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccchh-hhccccCceeec
Q 010381 211 KYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNF 287 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l 287 (512)
+++++|++++|.++.+ |..|..+++|++|++++|.++.++ ..+.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 3455555655555532 344555555666666555555333 3455555566666655555555433 445555555555
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
++|.+....+..+.++++|+.|+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCC
Confidence 5555543223334444444444443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-22 Score=191.04 Aligned_cols=247 Identities=16% Similarity=0.131 Sum_probs=127.6
Q ss_pred CeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCcc-cccc-chhhhccccCceee
Q 010381 211 KYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSY-IDQS-PEDIWMMQKLMHLN 286 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~-~~~l-p~~i~~l~~L~~L~ 286 (512)
++|++|++++|.++.++ ..+..+++|++|++++|.++.+ |..++.+++|++|++++|. +..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45556666666555443 3455556666666666655533 4455555666666666553 5554 34455556666666
Q ss_pred cCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC
Q 010381 287 FGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~ 366 (512)
+++|.+.+..|..+.++++|+.|++ +++. .....+..+..+++|+.|++++|.+..
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l----------------------~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYL----------------------QDNA--LQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEEC----------------------CSSC--CCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEEC----------------------CCCc--ccccCHhHhccCCCccEEECCCCcccc
Confidence 6665554443444444444444444 4441 111112224445555555555544321
Q ss_pred CcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC
Q 010381 367 RMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG 446 (512)
Q Consensus 367 L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 446 (512)
+..-.+..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..... +..+++|+.|++++++.....+.
T Consensus 168 ~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~~~~- 243 (285)
T 1ozn_A 168 VPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDNPWVCDCRA- 243 (285)
T ss_dssp ECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSSCEECSGGG-
T ss_pred cCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCCCccCCCCc-
Confidence 111035556 67777777777766666666777777777777777666543322 45667777777777532211110
Q ss_pred CCCccccceeeecCCcccCCCCcccC--CCCCCcEEEccCC
Q 010381 447 AGAMPKLESLIVDPCAYLRKLPEELW--CIQSLRKLDLHWP 485 (512)
Q Consensus 447 ~~~l~~L~~L~l~~c~~l~~lp~~~~--~l~~L~~L~l~~~ 485 (512)
......++.+....+...-..|..+. .+..++..++.+|
T Consensus 244 ~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 244 RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 11122344444444443334454442 2445555555555
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-23 Score=200.20 Aligned_cols=248 Identities=19% Similarity=0.158 Sum_probs=125.2
Q ss_pred CCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCc--ccChhhh-------cCcCCcEEecCCcccc-ccchhh--
Q 010381 209 KFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLK--CLPSQLC-------TLLNLQTLQMPSSYID-QSPEDI-- 276 (512)
Q Consensus 209 ~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~~~-------~l~~L~~L~L~~~~~~-~lp~~i-- 276 (512)
..++|+.|++++|.+ .+|..+... |++|+++++.++ .+|..+. ++++|++|++++|.+. .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 334445555555555 444443332 555555555543 3444333 4555555555555443 344433
Q ss_pred hccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcE
Q 010381 277 WMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEW 356 (512)
Q Consensus 277 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~ 356 (512)
..+++|++|++++|.+.+. |..++.+. ...+++|++|+++++ ......+..++.+++|+.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-----------------~~~~~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQ-----------------QWLKPGLKVLSIAQA--HSLNFSCEQVRVFPALST 177 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHH-----------------TTCCTTCCEEEEESC--SCCCCCTTTCCCCSSCCE
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHH-----------------HhhcCCCcEEEeeCC--CCccchHHHhccCCCCCE
Confidence 4555555555555555433 33333330 000145555555555 222223344555555555
Q ss_pred EEeccCCCCC----CcccCcCCCCCCccEEEEecccCCCC--CC-CCCCCCcccceeEEEcccccCceeeeeCCCCCccc
Q 010381 357 LKLVNESKPS----RMVLSEYQFPPSLTHLSLSNTELKED--PM-PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL 429 (512)
Q Consensus 357 L~l~~~~~p~----L~~l~~~~lp~~L~~L~L~~~~~~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 429 (512)
|++++|.+.. ...+.+..+ ++|++|++++|.+.+. .+ ..+..+++|++|++++|.+.+..+... ...+++|
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L 255 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDWPSQL 255 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCCCTTC
T ss_pred EECCCCCcCcchHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhhcCCC
Confidence 5555554210 000012455 6666666666655421 11 122355667777777666655442222 3456677
Q ss_pred cEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 430 KVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 430 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++|++++| .++.+|..+. ++|++|++++|. ++.+|. +..+++|++|++++|+
T Consensus 256 ~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 256 NSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred CEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 77777774 4556665444 677777777775 444555 6677777777777776
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-21 Score=201.48 Aligned_cols=235 Identities=15% Similarity=0.035 Sum_probs=150.8
Q ss_pred CCCceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCe
Q 010381 159 PMANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKY 238 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 238 (512)
.+..++.|.+..+....++. .+++|++|++++|.+. .++ ..+++|++|++++|.++.+|. .+++|++
T Consensus 59 l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-----~lp---~~l~~L~~L~Ls~N~l~~l~~---~l~~L~~ 125 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-----SLP---VLPPGLLELSIFSNPLTHLPA---LPSGLCK 125 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-----CCC---CCCTTCCEEEECSCCCCCCCC---CCTTCCE
T ss_pred hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-----cCC---CCCCCCCEEECcCCcCCCCCC---CCCCcCE
Confidence 45789999999777665444 6899999999999875 232 378999999999999998887 5689999
Q ss_pred eeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCcc
Q 010381 239 LKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 239 L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~ 317 (512)
|++++|.++.+|.. +++|++|++++|.+..+|. ..++|+.|++++|.+.. +| ..+++|+.|++++ .+..
T Consensus 126 L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 126 LWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp EECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred EECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence 99999999999864 5899999999999998886 35789999999999864 55 4456777777764 2222
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
++. .+++|+.|++++|. ...+|. .+++|+.|++++|.+..+ -..+ ++|+.|++++|.++. .|.
T Consensus 196 l~~---~~~~L~~L~L~~N~---l~~l~~---~~~~L~~L~Ls~N~L~~l----p~~l-~~L~~L~Ls~N~L~~-lp~-- 258 (622)
T 3g06_A 196 LPT---LPSELYKLWAYNNR---LTSLPA---LPSGLKELIVSGNRLTSL----PVLP-SELKELMVSGNRLTS-LPM-- 258 (622)
T ss_dssp CCC---CCTTCCEEECCSSC---CSSCCC---CCTTCCEEECCSSCCSCC----CCCC-TTCCEEECCSSCCSC-CCC--
T ss_pred CCC---ccchhhEEECcCCc---ccccCC---CCCCCCEEEccCCccCcC----CCCC-CcCcEEECCCCCCCc-CCc--
Confidence 222 23556666665552 112221 124455555555443321 1222 455555555554432 221
Q ss_pred CCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCC
Q 010381 398 EKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM 437 (512)
Q Consensus 398 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (512)
.+++|+.|++++|.+.. .+.. +..+++|+.|+|++|
T Consensus 259 -~~~~L~~L~Ls~N~L~~-lp~~--l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLTR-LPES--LIHLSSETTVNLEGN 294 (622)
T ss_dssp -CCTTCCEEECCSSCCCS-CCGG--GGGSCTTCEEECCSC
T ss_pred -ccccCcEEeCCCCCCCc-CCHH--HhhccccCEEEecCC
Confidence 33445555555554441 1111 344455555555553
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-24 Score=217.40 Aligned_cols=320 Identities=17% Similarity=0.104 Sum_probs=167.9
Q ss_pred CceeEEEEEecCCccc----cCC-C-CCCCeeEEEEecCCcchhhhcchhHHhcCCC----eeEEEEecCCcCC-----c
Q 010381 161 ANVKRCFILKDLIDFF----PSE-Y-SDMYLQSFLNHSSESDRLARIDCENFCKKFK----YLRVLDLGSAVLD-----Q 225 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~----~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~l~-----~ 225 (512)
..++++.+..+..... ... . .+++|++|+++++.+.. ..+..++..++ +|++|++++|.++ .
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD---VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH---HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh---HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 4566777775554421 111 1 56777777777776642 11233334444 5777777777766 3
Q ss_pred cCccccCccccCeeeecCCCCc-ccChhhh-----cCcCCcEEecCCccccc-----cchhhhccccCceeecCCcccCC
Q 010381 226 FPPGLENLFLLKYLKLNIPSLK-CLPSQLC-----TLLNLQTLQMPSSYIDQ-----SPEDIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 226 lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~-----~l~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~ 294 (512)
++..+..+++|++|++++|.++ ..+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+..
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 4666777777777777777766 2222222 24467777777776543 34455666777777777776543
Q ss_pred CCCCCCC-----CCCCCCeeecCC-CCcc-----CchhcCCCCCCCeEEEeccc--hhhhhhHHH-hccCCCCCcEEEec
Q 010381 295 PPTNYSS-----SLKNLIFVSALH-PISC-----TPDILGRLPNIQTLRISGDL--SYYQSRVSK-SLCKLQKLEWLKLV 360 (512)
Q Consensus 295 ~~p~~~~-----~l~~L~~l~l~~-~~~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~-~l~~l~~L~~L~l~ 360 (512)
..+..+. ..++|+.|++++ .+.. ++..+..+++|++|++++|. ......+.. ....+++|+.|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 2222221 244666676664 2111 24445566777777777663 111111222 22346667777776
Q ss_pred cCCCCCCc--cc--CcCCCCCCccEEEEecccCCCCCCCCCC-----CCcccceeEEEcccccCcee---eeeCCCCCcc
Q 010381 361 NESKPSRM--VL--SEYQFPPSLTHLSLSNTELKEDPMPTLE-----KLPYVQVLKLKQNSYLGRKL---ACVGSGGFPE 428 (512)
Q Consensus 361 ~~~~p~L~--~l--~~~~lp~~L~~L~L~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~ 428 (512)
+|.+.... .+ .+..+ ++|++|++++|.+.+..+..+. ..++|++|++++|.+.+... ... +..+++
T Consensus 265 ~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~ 342 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRF 342 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCSS
T ss_pred CCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH-HhhCCC
Confidence 65443100 00 22335 5666666666655332222221 22466666666665544321 111 234466
Q ss_pred ccEEEecCCCCccee-eeCC----C-CccccceeeecCCcccC----CCCcccCCCCCCcEEEccCCh
Q 010381 429 LKVLHLKSMYWLDEW-TMGA----G-AMPKLESLIVDPCAYLR----KLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 429 L~~L~L~~~~~l~~l-~~~~----~-~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|++|++++| .+... +..+ . ..++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 343 L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 343 LLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 666666664 23321 1111 1 14566666666665332 455555566666666666664
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-23 Score=198.24 Aligned_cols=246 Identities=16% Similarity=0.095 Sum_probs=165.6
Q ss_pred hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccC
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKL 282 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L 282 (512)
..++..+++|++|++++|.++.++ ..++.+++|++|++++|.++..++ ++.+++|++|++++|.++.+|. .++|
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L 101 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSI 101 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCc
Confidence 555577888999999999888555 578888999999999998886654 8888899999999988877663 4888
Q ss_pred ceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccC-chhcCCCCCCCeEEEeccchhhhhhHHHhc-cCCCCCcEEEe
Q 010381 283 MHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCT-PDILGRLPNIQTLRISGDLSYYQSRVSKSL-CKLQKLEWLKL 359 (512)
Q Consensus 283 ~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~l 359 (512)
++|++++|.+.+..+. .+++|+.|++++ .+... +..++.+++|+.|++++|. .....+..+ ..+++|+.|++
T Consensus 102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEEC
T ss_pred CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEEC
Confidence 9999988887654332 256677777764 22222 3355667777777777772 333233333 35677777777
Q ss_pred ccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCC
Q 010381 360 VNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYW 439 (512)
Q Consensus 360 ~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 439 (512)
++|.+..+. ....+ ++|++|++++|.+++. +..+..+++|+.|++++|.+.. .+. . +..+++|+.|++++|+.
T Consensus 177 ~~N~l~~~~--~~~~l-~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~-~-~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 177 QYNFIYDVK--GQVVF-AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEK-A-LRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp TTSCCCEEE--CCCCC-TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECT-T-CCCCTTCCEEECTTCCC
T ss_pred CCCcCcccc--ccccc-ccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhh-H-hhcCCCCCEEEccCCCc
Confidence 777664332 22335 7777777777777643 3346677777777777777653 222 2 45677777777777544
Q ss_pred c-ceeeeCCCCccccceeeecCCcccCC
Q 010381 440 L-DEWTMGAGAMPKLESLIVDPCAYLRK 466 (512)
Q Consensus 440 l-~~l~~~~~~l~~L~~L~l~~c~~l~~ 466 (512)
. ..++..+..+++|+.|++.+|+.++.
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cCcCHHHHHhccccceEEECCCchhccC
Confidence 3 24555566777777777776655543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-21 Score=193.28 Aligned_cols=242 Identities=18% Similarity=0.174 Sum_probs=167.1
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccc-hhhhccccCceeecCC
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGS 289 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~ 289 (512)
..+.++.++..++.+|..+. ++|++|++++|.++.+ |..++++++|++|+|++|.+..++ ..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888888888887665 6899999999999955 667899999999999999888776 5688999999999999
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccCc-hhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCTP-DILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
|.+....+..+.++++|+.|++++ .+...+ ..+..+++|+.|+++++. ....++. .
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~-------------------~- 190 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISE-------------------G- 190 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECT-------------------T-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--CccccCh-------------------h-
Confidence 998755555577788888888775 222222 245556666666666541 1111111 1
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee-eeC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMG 446 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~ 446 (512)
.+..+ ++|+.|++++|.+.+. +.+..+++|++|++++|.+.+..+.. +.++++|+.|++++| .++.+ +..
T Consensus 191 ---~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~ 261 (452)
T 3zyi_A 191 ---AFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNS-QVSLIERNA 261 (452)
T ss_dssp ---TTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGG--GTTCTTCCEEECTTS-CCCEECTTT
T ss_pred ---hccCC-CCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCccc--ccCccCCCEEEeCCC-cCceECHHH
Confidence 34556 6777777777766532 34667777777777777765543332 567777777777774 34444 455
Q ss_pred CCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 447 AGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 447 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+..+++|+.|++++|......+..+..+++|+.|++++||
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 6677788888888776433333345677888888887775
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=191.23 Aligned_cols=240 Identities=17% Similarity=0.196 Sum_probs=189.0
Q ss_pred eEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeee
Q 010381 164 KRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKL 241 (512)
Q Consensus 164 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l 241 (512)
+.+.........+|. .-.++++.|.+.+|.+. .+ ...|.++++|++|++++|.++.++ ..|.++++|++|++
T Consensus 46 ~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 46 SKVICVRKNLREVPD-GISTNTRLLNLHENQIQ-----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp CEEECCSCCCSSCCS-CCCTTCSEEECCSCCCC-----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCC-----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 345544333444333 24578999999999886 33 333489999999999999998555 67899999999999
Q ss_pred cCCCCcccCh-hhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCC-CCCCCCCCCeeecCC-CCcc
Q 010381 242 NIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTN-YSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 242 ~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~l~l~~-~~~~ 317 (512)
++|.++.+|. .+..+++|++|++++|.+..+|. .+.++++|++|++++|...+.++. .+.++++|+.|++++ .+..
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 9999998776 58899999999999999988875 578999999999999766555554 688999999999986 3333
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
+ ..+..+++|+.|++++| ......+..+..+++|+.|++++|.+..+..-.+..+ ++|+.|+|++|.++...+..+
T Consensus 200 ~-~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 200 I-PNLTPLIKLDELDLSGN--HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp C-CCCTTCSSCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCCCTTTT
T ss_pred c-cccCCCcccCEEECCCC--ccCccChhhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCccChhHh
Confidence 3 35788899999999998 3555556778889999999999987643222167778 899999999999887777778
Q ss_pred CCCcccceeEEEcccc
Q 010381 398 EKLPYVQVLKLKQNSY 413 (512)
Q Consensus 398 ~~l~~L~~L~l~~~~~ 413 (512)
..+++|+.|++++|.+
T Consensus 276 ~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSCTTCCEEECCSSCE
T ss_pred ccccCCCEEEcCCCCc
Confidence 8899999999998875
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-24 Score=216.22 Aligned_cols=326 Identities=15% Similarity=0.001 Sum_probs=229.6
Q ss_pred CCceeEEEEEecCCccccCCC---CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCc-cCcc-ccCcc
Q 010381 160 MANVKRCFILKDLIDFFPSEY---SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQ-FPPG-LENLF 234 (512)
Q Consensus 160 ~~~~r~l~l~~~~~~~~~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-lp~~-l~~l~ 234 (512)
+..++++.+..+......... .+++|++|.+.++.+.......+...+..+++|++|++++|.++. .+.. ...+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 456888999866554433222 789999999999988643333454444889999999999999872 2222 23344
Q ss_pred ----ccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCcccccc-chhhh-----ccccCceeecCCcccCCC----
Q 010381 235 ----LLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQS-PEDIW-----MMQKLMHLNFGSITLPAP---- 295 (512)
Q Consensus 235 ----~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~l-p~~i~-----~l~~L~~L~l~~~~~~~~---- 295 (512)
+|++|++++|.++ .+|..+..+++|++|++++|.++.. +..+. ..++|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 7999999999988 4678889999999999999987542 22222 256899999999988753
Q ss_pred CCCCCCCCCCCCeeecCCC-Ccc-CchhcC-----CCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCC
Q 010381 296 PTNYSSSLKNLIFVSALHP-ISC-TPDILG-----RLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 296 ~p~~~~~l~~L~~l~l~~~-~~~-~~~~l~-----~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~ 366 (512)
++..+..+++|+.|+++++ +.. .+..+. ..++|++|++++|. ......++..+..+++|+.|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 3555677899999999862 111 112222 36699999999984 22233578888899999999999987632
Q ss_pred C--ccc---CcCCCCCCccEEEEecccCCCC----CCCCCCCCcccceeEEEcccccCceeeee---CCCCCccccEEEe
Q 010381 367 R--MVL---SEYQFPPSLTHLSLSNTELKED----PMPTLEKLPYVQVLKLKQNSYLGRKLACV---GSGGFPELKVLHL 434 (512)
Q Consensus 367 L--~~l---~~~~lp~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~L 434 (512)
. ..+ ....+ ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+... -....++|++|++
T Consensus 242 ~~~~~l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 242 VGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 0 000 22346 8999999999988653 34456678999999999998765432211 0233479999999
Q ss_pred cCCCCcce----eeeCCCCccccceeeecCCcccCCCCc----ccCC-CCCCcEEEccCCh
Q 010381 435 KSMYWLDE----WTMGAGAMPKLESLIVDPCAYLRKLPE----ELWC-IQSLRKLDLHWPQ 486 (512)
Q Consensus 435 ~~~~~l~~----l~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~-l~~L~~L~l~~~~ 486 (512)
++|..... ++..+..+++|++|++++|......+. .+.. .++|++|++++|.
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 99753322 455566789999999999974433222 2222 7899999999996
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-21 Score=190.00 Aligned_cols=259 Identities=12% Similarity=0.052 Sum_probs=153.6
Q ss_pred CeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccchhhhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 288 (512)
..++..+++.+.+...+ ..+..+++|++|++++|.++.++ ..++.+++|++|++++|.+...++ +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 45667777777776333 34556789999999999999665 578999999999999998877665 8899999999999
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCC-CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHP-ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
+|.+.+ +...++|+.|+++++ +...+ ...+++|+.|+++++ ......+..+..+++|+.|++++|.+..+
T Consensus 89 ~n~l~~-----l~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQE-----LLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEE-----EEECTTCCEEECCSSCCSEEE--ECCCSSCEEEECCSS--CCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCcccc-----ccCCCCcCEEECCCCccCCcC--ccccCCCCEEECCCC--CCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 998753 223367777777642 12211 233556666666666 23222233445555666666665544321
Q ss_pred cccCc-CCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC
Q 010381 368 MVLSE-YQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG 446 (512)
Q Consensus 368 ~~l~~-~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 446 (512)
..-.+ ..+ ++|++|++++|.+++. +....+++|++|++++|.+.+.... +..+++|+.|++++| .++.+|..
T Consensus 160 ~~~~~~~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~L~~N-~l~~l~~~ 232 (317)
T 3o53_A 160 NFAELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNN-KLVLIEKA 232 (317)
T ss_dssp EGGGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTS-CCCEECTT
T ss_pred cHHHHhhcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh---hcccCcccEEECcCC-cccchhhH
Confidence 10012 234 5566666666555432 1222355566666665555432211 344555666666553 44455555
Q ss_pred CCCccccceeeecCCccc-CCCCcccCCCCCCcEEEccCCh
Q 010381 447 AGAMPKLESLIVDPCAYL-RKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 447 ~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+..+++|+.|++++|+.. ..+|..+..+++|+.+++.+|+
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 555556666666655544 3444455555555555555443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-22 Score=193.47 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=164.0
Q ss_pred CCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC--ccCcccc-------CccccCeeeecCCCCc-ccC
Q 010381 182 DMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD--QFPPGLE-------NLFLLKYLKLNIPSLK-CLP 250 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~--~lp~~l~-------~l~~L~~L~l~~~~i~-~lp 250 (512)
.++|+.|.+.++.+ .+ ..++.. |+.|++++|.++ .+|..+. .+++|++|++++|.++ .+|
T Consensus 42 ~~~L~~l~l~~n~l------~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE------ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEECTTHHHHCCTT------CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred CCCceeEeeccccc------ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 34566666666655 22 333222 888899999885 5776665 7899999999999998 788
Q ss_pred hhh--hcCcCCcEEecCCccccccchhhhcc-----ccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcC
Q 010381 251 SQL--CTLLNLQTLQMPSSYIDQSPEDIWMM-----QKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILG 323 (512)
Q Consensus 251 ~~~--~~l~~L~~L~L~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~ 323 (512)
..+ +.+++|++|++++|.+..+|..++.+ ++|++|++++|.+.+..|..++++++|+.|+++
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls----------- 181 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS----------- 181 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC-----------
T ss_pred HHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC-----------
Confidence 876 89999999999999998888888887 999999999999876555666666555555555
Q ss_pred CCCCCCeEEEeccchhhhh--hHHHhc--cCCCCCcEEEeccCCCCCCccc---CcCCCCCCccEEEEecccCCCCCC-C
Q 010381 324 RLPNIQTLRISGDLSYYQS--RVSKSL--CKLQKLEWLKLVNESKPSRMVL---SEYQFPPSLTHLSLSNTELKEDPM-P 395 (512)
Q Consensus 324 ~l~~L~~L~l~~~~~~~~~--~l~~~l--~~l~~L~~L~l~~~~~p~L~~l---~~~~lp~~L~~L~L~~~~~~~~~~-~ 395 (512)
+|. ... .++..+ ..+++|+.|++++|.+..+..+ .+..+ ++|+.|++++|.+.+..+ .
T Consensus 182 -----------~N~--l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 182 -----------DNP--ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp -----------SCT--TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCS
T ss_pred -----------CCC--cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccchh
Confidence 331 111 122333 4555555555555544321111 12345 677777777777665443 3
Q ss_pred CCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcc
Q 010381 396 TLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAY 463 (512)
Q Consensus 396 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 463 (512)
.+..+++|++|++++|.+. ..+.. +. ++|++|++++ +.++.+|. +..+++|++|++++|+.
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~--~~--~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKG--LP--AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSS--CC--SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred hhhhcCCCCEEECCCCccC-hhhhh--cc--CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCCC
Confidence 4556778888888888776 23222 22 7888888888 46676766 77888888888888874
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=177.70 Aligned_cols=220 Identities=18% Similarity=0.123 Sum_probs=147.8
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCcccccc-chhhhccccCceeecCCcc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 291 (512)
++++.+++.++.+|..+ .++|++|++++|.++.+| ..++.+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56777777777777544 357788888887777655 3467777788888777777665 4567777777777777775
Q ss_pred cCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccC
Q 010381 292 LPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLS 371 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~ 371 (512)
... ...+..+..+++|++|+++++. ..... |. .
T Consensus 92 ~l~---------------------~~~~~~~~~l~~L~~L~l~~n~--l~~~~--------------------~~----~ 124 (285)
T 1ozn_A 92 QLR---------------------SVDPATFHGLGRLHTLHLDRCG--LQELG--------------------PG----L 124 (285)
T ss_dssp TCC---------------------CCCTTTTTTCTTCCEEECTTSC--CCCCC--------------------TT----T
T ss_pred Ccc---------------------ccCHHHhcCCcCCCEEECCCCc--CCEEC--------------------Hh----H
Confidence 211 1113345566677777777661 11111 22 4
Q ss_pred cCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee-eeCCCCc
Q 010381 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAM 450 (512)
Q Consensus 372 ~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l 450 (512)
+..+ ++|++|++++|.+....+..++.+++|++|++++|.+.+.... . +..+++|+.|++++|. ++.+ |..+..+
T Consensus 125 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 200 (285)
T 1ozn_A 125 FRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-A-FRGLHSLDRLLLHQNR-VAHVHPHAFRDL 200 (285)
T ss_dssp TTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT-T-TTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred hhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH-H-hcCccccCEEECCCCc-ccccCHhHccCc
Confidence 5566 7778888888877766666677888888888888776543222 2 5677888888888854 4444 6677788
Q ss_pred cccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 451 PKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 451 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++|+.|++++|......+..+..+++|+.|++++|+
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 888888888887444333457888888888888875
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-21 Score=205.44 Aligned_cols=320 Identities=10% Similarity=0.050 Sum_probs=188.9
Q ss_pred CceeEEEEEecCCccccCCC--C-CCC-eeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCc-----cCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--S-DMY-LQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQ-----FPPGLE 231 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----lp~~l~ 231 (512)
..++.+.+..+......... . +++ |++|.+.++.... ...+..+...+++|++|++++|.++. ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56777888754333211111 2 334 8888888775321 22344454678888888888887652 334456
Q ss_pred CccccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccC-------------
Q 010381 232 NLFLLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLP------------- 293 (512)
Q Consensus 232 ~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~------------- 293 (512)
.+++|++|+++++.++ .++..+.++++|++|++++|.+..+|..+.++++|++|+++.+...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 6788888888888775 4555567788899999988888778877888888888888643221
Q ss_pred -------------CCCCCCCCCCCCCCeeecCCCC---ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEE
Q 010381 294 -------------APPTNYSSSLKNLIFVSALHPI---SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWL 357 (512)
Q Consensus 294 -------------~~~p~~~~~l~~L~~l~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L 357 (512)
..+|..+..+++|+.|++++.. ......+..+++|++|+++++ .....++.....+++|+.|
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEE
Confidence 1223333445555666665420 011122466667777777644 3344445555667777777
Q ss_pred Eec-----------cCC------------CCCCcccCc-------------C-CCCCCccEEEEec----ccCCCCCC--
Q 010381 358 KLV-----------NES------------KPSRMVLSE-------------Y-QFPPSLTHLSLSN----TELKEDPM-- 394 (512)
Q Consensus 358 ~l~-----------~~~------------~p~L~~l~~-------------~-~lp~~L~~L~L~~----~~~~~~~~-- 394 (512)
+++ .+. +|+|+.|.+ . .+ ++|+.|++++ +.+++.+.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHH
Confidence 777 222 234444411 1 14 5666666653 22322111
Q ss_pred ---CCCCCCcccceeEEEccc--ccCceeeeeCCCCCccccEEEecCCCCcc-eeeeCCCCccccceeeecCCcccC-CC
Q 010381 395 ---PTLEKLPYVQVLKLKQNS--YLGRKLACVGSGGFPELKVLHLKSMYWLD-EWTMGAGAMPKLESLIVDPCAYLR-KL 467 (512)
Q Consensus 395 ---~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~-~l 467 (512)
..+..+++|+.|+++.|. +.+..+... ...+++|++|++++|.... .++.....+++|++|++++|+... .+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 113446667777775433 333333222 2346778888888754222 344445677888888888888322 24
Q ss_pred CcccCCCCCCcEEEccCCh
Q 010381 468 PEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 468 p~~~~~l~~L~~L~l~~~~ 486 (512)
+..+..+++|++|++++|.
T Consensus 506 ~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhcCccCeeECcCCc
Confidence 4445678888888888887
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-21 Score=198.80 Aligned_cols=234 Identities=16% Similarity=0.086 Sum_probs=159.9
Q ss_pred CCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 209 KFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 209 ~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
.+++|++|++++|.++.++ ..++.+++|++|++++|.++..++ ++.+++|++|++++|.++.+|. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3447888888888887554 578888888888888888875554 7788888888888887777663 378888888
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCC-CCc-cCchhcCCCCCCCeEEEeccchhhhhhHHHhcc-CCCCCcEEEeccCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALH-PIS-CTPDILGRLPNIQTLRISGDLSYYQSRVSKSLC-KLQKLEWLKLVNESK 364 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~l~~L~~L~l~~~~~ 364 (512)
++|.+.+..+. .+++|+.|++++ .+. ..+..++.+++|+.|++++| ......|..+. .+++|+.|++++|.+
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCCCcc
Confidence 88887654332 346677777764 222 23445667777788887777 34444455554 677888888888766
Q ss_pred CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCc-cee
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWL-DEW 443 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l-~~l 443 (512)
..+. ....+ ++|+.|+|++|.+++.++ .+..+++|+.|++++|.+.+ .+. . +..+++|+.|++++|+.. ..+
T Consensus 182 ~~~~--~~~~l-~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~-~-l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 182 YDVK--GQVVF-AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEK-A-LRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CEEE--CCCCC-TTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECT-T-CCCCTTCCEEECTTCCBCHHHH
T ss_pred cccc--ccccC-CCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cch-h-hccCCCCCEEEcCCCCCcCcch
Confidence 4322 23346 788888888888765433 47778888888888877764 222 2 566778888888886543 255
Q ss_pred eeCCCCccccceeeec
Q 010381 444 TMGAGAMPKLESLIVD 459 (512)
Q Consensus 444 ~~~~~~l~~L~~L~l~ 459 (512)
|..+..++.|+.+++.
T Consensus 255 ~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCcEEecc
Confidence 5666777777777775
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=192.96 Aligned_cols=234 Identities=12% Similarity=0.058 Sum_probs=126.7
Q ss_pred CccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeee
Q 010381 232 NLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS 310 (512)
Q Consensus 232 ~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 310 (512)
.+++|++|++++|.++.++ ..++.+++|++|+|++|.+...++ +..+++|++|++++|.+.+ +| ..++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEE
Confidence 4458999999999999664 678999999999999998876665 8899999999999998753 22 236667777
Q ss_pred cCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcC-CCCCCccEEEEeccc
Q 010381 311 ALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEY-QFPPSLTHLSLSNTE 388 (512)
Q Consensus 311 l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~-~lp~~L~~L~L~~~~ 388 (512)
+++ .+...+. ..+++|+.|++++| ......|..++.+++|+.|++++|.+.....-.+. .+ ++|+.|+|++|.
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l-~~L~~L~Ls~N~ 180 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS-DTLEHLNLQYNF 180 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT-TTCCEEECTTSC
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC-CcccEEecCCCc
Confidence 664 2111111 23455556666555 23333333444455555555555443210000221 34 455555555554
Q ss_pred CCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCccc-CCC
Q 010381 389 LKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYL-RKL 467 (512)
Q Consensus 389 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l 467 (512)
+++. +....+++|+.|++++|.+.+..+. +..+++|+.|++++ +.++.+|..++.+++|+.|++++|+.. ..+
T Consensus 181 l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 181 IYDV--KGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCEE--ECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred cccc--cccccCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 4332 1122344555555554444432211 23444555555554 234444444444455555555554433 233
Q ss_pred CcccCCCCCCcEEEc
Q 010381 468 PEELWCIQSLRKLDL 482 (512)
Q Consensus 468 p~~~~~l~~L~~L~l 482 (512)
|..+..+++|+.+++
T Consensus 255 ~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 255 RDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCcEEec
Confidence 334444444444443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-21 Score=206.29 Aligned_cols=302 Identities=13% Similarity=0.028 Sum_probs=163.5
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCC----cccChhhhcC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSL----KCLPSQLCTL 256 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i----~~lp~~~~~l 256 (512)
.+++|++|.+.++.........+..++..+++|++|++++|.+..+|..+..+++|++|++++... ...+..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 345555555554444311112333333455555555555555444444444445555555442111 1222233334
Q ss_pred cCCcEEecCCccccccchhhhccccCceeecCCcccCCCCC-CCCCCCCCCCeeecCCCC--ccCchhcCCCCCCCeEEE
Q 010381 257 LNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPT-NYSSSLKNLIFVSALHPI--SCTPDILGRLPNIQTLRI 333 (512)
Q Consensus 257 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l~l~~~~--~~~~~~l~~l~~L~~L~l 333 (512)
++|+.|+++++....+|..+..+++|++|++++|.+....+ ..+.++++|+.|++.+.+ ...+.....+++|++|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 44444444444344556666677777777777776432211 223556666666654210 112222234555666666
Q ss_pred ec----------cchhhhhhHHHhccCCCCCcEEEeccCC------------CCCCcccC--------------------
Q 010381 334 SG----------DLSYYQSRVSKSLCKLQKLEWLKLVNES------------KPSRMVLS-------------------- 371 (512)
Q Consensus 334 ~~----------~~~~~~~~l~~~l~~l~~L~~L~l~~~~------------~p~L~~l~-------------------- 371 (512)
++ |.......++.....+++|+.|+++.+. +|+|+.|.
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 52 2111111222223334445555443321 22333331
Q ss_pred --cCCCCCCccEEEEeccc--CCCCCCCCCC-CCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcc--eee
Q 010381 372 --EYQFPPSLTHLSLSNTE--LKEDPMPTLE-KLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD--EWT 444 (512)
Q Consensus 372 --~~~lp~~L~~L~L~~~~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~ 444 (512)
+..+ ++|+.|+++.|. +++..+..++ .+++|+.|++++|.+.+..+... ..++++|++|+|++|. ++ .++
T Consensus 430 ~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~ 506 (592)
T 3ogk_B 430 SLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCC-FSERAIA 506 (592)
T ss_dssp HHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH-HTCCTTCCEEEEESCC-CBHHHHH
T ss_pred HHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH-HhcCcccCeeeccCCC-CcHHHHH
Confidence 3347 899999998764 4433333333 48899999999999876554443 5788999999999987 44 244
Q ss_pred eCCCCccccceeeecCCcccCC-CCcccCCCCCCcEEEccCC
Q 010381 445 MGAGAMPKLESLIVDPCAYLRK-LPEELWCIQSLRKLDLHWP 485 (512)
Q Consensus 445 ~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~ 485 (512)
.....+++|+.|++++|+.... +......+|.++...+...
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 4456789999999999994433 2223356888888888776
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-19 Score=166.80 Aligned_cols=199 Identities=21% Similarity=0.202 Sum_probs=110.1
Q ss_pred eeEEEEecCCcCCccCc-cccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccc-hhhhccccCceeecC
Q 010381 212 YLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFG 288 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~ 288 (512)
.|++|++++|.++.++. .+.++++|++|++++|.++.++. .++++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45666666666654433 55566666666666666664443 4556666666666666555544 345566666666666
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCC-CCc--cCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCc----EEEecc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALH-PIS--CTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLE----WLKLVN 361 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~-~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~----~L~l~~ 361 (512)
+|.+.+..+..++++++|+.|++++ .+. ..+..++.+++|+.|++++|. .....+..+..+++|+ .|++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecCC
Confidence 6665544444455556666665553 112 245566667777777777662 2221122232233333 666666
Q ss_pred CCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEccccc
Q 010381 362 ESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYL 414 (512)
Q Consensus 362 ~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 414 (512)
|.+..+.. ..... .+|+.|++++|.+++.++..++.+++|+.|++++|.+.
T Consensus 187 n~l~~~~~-~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NPMNFIQP-GAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCEECT-TSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CcccccCc-cccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 65432110 22333 46777777777766555555666777777777766653
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-19 Score=168.07 Aligned_cols=215 Identities=18% Similarity=0.170 Sum_probs=131.6
Q ss_pred EEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccC
Q 010381 216 LDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 216 L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~ 293 (512)
.+..+..++.+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..++. .+.++++|++|++++|.+.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4455555667776554 468888888888886655 67788888888888887777664 5777888888888877764
Q ss_pred CCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcC
Q 010381 294 APPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEY 373 (512)
Q Consensus 294 ~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~ 373 (512)
+ ..+..+..+++|++|+++++ .+..+....+.
T Consensus 90 ~----------------------~~~~~~~~l~~L~~L~l~~n--------------------------~l~~~~~~~~~ 121 (276)
T 2z62_A 90 S----------------------LALGAFSGLSSLQKLVAVET--------------------------NLASLENFPIG 121 (276)
T ss_dssp E----------------------ECTTTTTTCTTCCEEECTTS--------------------------CCCCSTTCCCT
T ss_pred c----------------------cChhhhcCCccccEEECCCC--------------------------CccccCchhcc
Confidence 2 22234556667777777666 22111111344
Q ss_pred CCCCCccEEEEecccCCCC-CCCCCCCCcccceeEEEcccccCceeeeeCCCCCcccc----EEEecCCCCcceeeeCCC
Q 010381 374 QFPPSLTHLSLSNTELKED-PMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELK----VLHLKSMYWLDEWTMGAG 448 (512)
Q Consensus 374 ~lp~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~l~~l~~~~~ 448 (512)
.+ ++|++|++++|.+.+. .+..++.+++|++|++++|.+.+..... +..+++|+ .|++++ +.++.++....
T Consensus 122 ~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~ 197 (276)
T 2z62_A 122 HL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSLDLSL-NPMNFIQPGAF 197 (276)
T ss_dssp TC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG--GHHHHTCTTCCEEEECCS-SCCCEECTTSS
T ss_pred cC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH--hhhhhhccccceeeecCC-CcccccCcccc
Confidence 55 6666666666666542 3556666667777777766654432211 23334444 666766 34555655444
Q ss_pred CccccceeeecCCcccCCCCc-ccCCCCCCcEEEccCC
Q 010381 449 AMPKLESLIVDPCAYLRKLPE-ELWCIQSLRKLDLHWP 485 (512)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~ 485 (512)
...+|+.|++++|. ++.+|. .+..+++|++|++++|
T Consensus 198 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 198 KEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 55567777777766 444444 3466777777777744
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-19 Score=169.88 Aligned_cols=191 Identities=20% Similarity=0.218 Sum_probs=102.3
Q ss_pred CCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCC
Q 010381 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~ 289 (512)
+++|+.|++++|.++.+| .+..+++|++|++++|.++.++. ++.+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 344555555555554443 34455555555555555554444 555555555555555554443 344555555555555
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
|.+.+ ++ .+..+++|+.|++++ .+...+ .++.+++|+.|++++|. . ..++. +..+++|+.|++++|.+..+.
T Consensus 117 n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~--l-~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 117 TQITD-VT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ--V-SDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp SCCCC-CG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC--C-CCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCC-ch-hhcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCc--C-CCChh-hcCCCCCCEEECCCCccCcCh
Confidence 55432 22 144444444444443 112222 25566666666666662 1 12222 566667777777776665433
Q ss_pred ccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC
Q 010381 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
.+..+ ++|+.|++++|.+.+.. .+..+++|+.|++++|.+..
T Consensus 190 --~l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 --PLASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred --hhcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 34556 77777777777765433 36677777777777777654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-20 Score=182.62 Aligned_cols=230 Identities=17% Similarity=0.218 Sum_probs=139.9
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCc-c-cChhhhcCcCCcEEecCCcccc-ccchhhhccccCceeec
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLK-C-LPSQLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~-~-lp~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l 287 (512)
+.+++|+++++.+...+..+..+++|++|++++|.++ . +|..+..+++|++|++++|.+. ..|..+.++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 6677777777777655555666777777777777766 2 6666777777777777777654 45566777777777777
Q ss_pred CCc-ccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCC-CCcEEEeccCC--
Q 010381 288 GSI-TLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQ-KLEWLKLVNES-- 363 (512)
Q Consensus 288 ~~~-~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~-~L~~L~l~~~~-- 363 (512)
++| .+.. ...+..+..+++|++|++++|.......++..+..++ +|+.|++++|.
T Consensus 150 ~~~~~l~~---------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 150 SGCSGFSE---------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp TTCBSCCH---------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred CCCCCCCH---------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 777 3321 1233344555666666666652112223455555666 66666666652
Q ss_pred C-----CCCcccCcCCCCCCccEEEEeccc-CCCCCCCCCCCCcccceeEEEccc-ccCceeeeeCCCCCccccEEEecC
Q 010381 364 K-----PSRMVLSEYQFPPSLTHLSLSNTE-LKEDPMPTLEKLPYVQVLKLKQNS-YLGRKLACVGSGGFPELKVLHLKS 436 (512)
Q Consensus 364 ~-----p~L~~l~~~~lp~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~L~~ 436 (512)
+ |. .+..+ ++|+.|++++|. +++..+..++.+++|++|++++|. +....+.. +..+++|+.|++++
T Consensus 209 ~~~~~l~~----~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 209 LQKSDLST----LVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFG 281 (336)
T ss_dssp SCHHHHHH----HHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECTT
T ss_pred CCHHHHHH----HHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH--HhcCCCCCEEeccC
Confidence 2 11 23455 677777777776 555556667777888888888774 32222211 45678888888888
Q ss_pred CCCcceeeeCCCCc-cccceeeecCCcccCCCCcccC
Q 010381 437 MYWLDEWTMGAGAM-PKLESLIVDPCAYLRKLPEELW 472 (512)
Q Consensus 437 ~~~l~~l~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 472 (512)
| +.. ..+..+ .+|+.|++++|......|..++
T Consensus 282 ~--i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 282 I--VPD--GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp S--SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred c--cCH--HHHHHHHhhCcceEEecccCccccCCccc
Confidence 6 221 012223 3466677777776666665444
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=162.86 Aligned_cols=195 Identities=24% Similarity=0.251 Sum_probs=106.2
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchhh-hccccCceeecCC
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPEDI-WMMQKLMHLNFGS 289 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~l~~ 289 (512)
..+.++++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|.+..+|..+ .++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35667777777776666543 467777777777775554 4667777777777777776666543 5677777777777
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccC-chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCT-PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
|.+....+..+.++++|+.|++++ .+... +..++.+++|+.|+++++ .+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------------------------~l~~~ 148 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN--------------------------ELQSL 148 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------------------CCCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC--------------------------cCCcc
Confidence 776543334445555555555543 11111 122344444444444444 22211
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM 437 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (512)
..-.+..+ ++|+.|++++|.+....+..+..+++|++|++++|.+....... +..+++|+.|+++++
T Consensus 149 ~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 149 PKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSS
T ss_pred CHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH--hccccCCCEEEecCC
Confidence 10023444 55555555555555444444555555555555555554322111 344555556665554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=166.29 Aligned_cols=199 Identities=21% Similarity=0.120 Sum_probs=121.8
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchhhhccccCceee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLN 286 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 286 (512)
.++++++.++++++.++.+|..+. +++++|++++|.++.+ |..+..+++|++|++++|.++.++.. +.+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 567778888888888887776654 5788888888888744 45677888888888888877777654 6778888888
Q ss_pred cCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC
Q 010381 287 FGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~ 366 (512)
+++|.+. .+|..+..+++|+.|+++ ++ ......+..+..+++|+.|++++|.+..
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~----------------------~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVS----------------------FN--RLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECC----------------------SS--CCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECC----------------------CC--cCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 8887774 445444444444444444 33 1111111223344444444444443322
Q ss_pred CcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 367 RMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 367 L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
+..-.+..+ ++|+.|++++|.++..++..+..+++|+.|++++|.+... +.. +...++|+.|++++++
T Consensus 139 ~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~--~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 139 LPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKG--FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTT--TTTTCCCSEEECCSCC
T ss_pred cChhhcccc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-Chh--hcccccCCeEEeCCCC
Confidence 111034455 6777777777777655555566677777777777766532 221 3445667777777643
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-19 Score=167.64 Aligned_cols=206 Identities=18% Similarity=0.197 Sum_probs=96.9
Q ss_pred CCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchh-hhccccCceeecC
Q 010381 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFG 288 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~ 288 (512)
+++|+.|+++++.++.++ .++.+++|++|++++|.++.++ .++.+++|++|++++|.+..++.. +.++++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 344555555555544333 2444555555555555554432 444555555555555544444432 3445555555555
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
+|.+.+..+.. ++.+++|+.|++++| .+..+.
T Consensus 118 ~n~l~~~~~~~----------------------~~~l~~L~~L~L~~n--------------------------~l~~~~ 149 (272)
T 3rfs_A 118 ENQLQSLPDGV----------------------FDKLTNLTYLNLAHN--------------------------QLQSLP 149 (272)
T ss_dssp TSCCCCCCTTT----------------------TTTCTTCCEEECCSS--------------------------CCCCCC
T ss_pred CCcCCccCHHH----------------------hccCCCCCEEECCCC--------------------------ccCccC
Confidence 55443222222 233444444444443 111000
Q ss_pred ccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCC
Q 010381 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAG 448 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 448 (512)
.-.+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.+..+.. +..+++|+.|++++|+. .+
T Consensus 150 ~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~-------~~ 219 (272)
T 3rfs_A 150 KGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQYIWLHDNPW-------DC 219 (272)
T ss_dssp TTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCB-------CC
T ss_pred HHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH--HhCCcCCCEEEccCCCc-------cc
Confidence 0023344 55555555555555444444555555666666555554433221 34555666666655421 13
Q ss_pred CccccceeeecCCcccCCCCcccCCCC
Q 010381 449 AMPKLESLIVDPCAYLRKLPEELWCIQ 475 (512)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~lp~~~~~l~ 475 (512)
.+|+|+.|++..|.....+|..++.++
T Consensus 220 ~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 355566666666555555555554443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-20 Score=196.88 Aligned_cols=319 Identities=14% Similarity=0.096 Sum_probs=203.7
Q ss_pred CceeEEEEEecCCccccCCC---CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCc-----cCccccC
Q 010381 161 ANVKRCFILKDLIDFFPSEY---SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQ-----FPPGLEN 232 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----lp~~l~~ 232 (512)
..++++.+..+......... .+++|++|.+.++.... ...+..+...+++|++|++++|.++. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 57888888855443322222 57899999999884321 22345665689999999999998652 3333446
Q ss_pred ccccCeeeecCCC--Cc--ccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCccc---------------
Q 010381 233 LFLLKYLKLNIPS--LK--CLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITL--------------- 292 (512)
Q Consensus 233 l~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~--------------- 292 (512)
+++|++|++++|. +. .++..+..+++|++|++++| .+..+|..+.++++|++|+++.+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999886 33 34444566899999999998 6677777788888888888665421
Q ss_pred -----------CC----CCCCCCCCCCCCCeeecCCC-Cc--cCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCC
Q 010381 293 -----------PA----PPTNYSSSLKNLIFVSALHP-IS--CTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKL 354 (512)
Q Consensus 293 -----------~~----~~p~~~~~l~~L~~l~l~~~-~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L 354 (512)
.. .++..+..+++|+.|++++. +. .....+..+++|++|++.+| .....++.....+++|
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCC
Confidence 00 12222235678888888752 11 12233568899999999988 3444555555568889
Q ss_pred cEEEecc---------C------------CCCCCccc-------------Cc-CCCCCCccEEEEe--c----ccCCCCC
Q 010381 355 EWLKLVN---------E------------SKPSRMVL-------------SE-YQFPPSLTHLSLS--N----TELKEDP 393 (512)
Q Consensus 355 ~~L~l~~---------~------------~~p~L~~l-------------~~-~~lp~~L~~L~L~--~----~~~~~~~ 393 (512)
+.|++.. + .+|+|+.| .+ ..+ ++|+.|+++ + +.++...
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCC
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCCc
Confidence 9998832 1 13455544 11 135 677777777 2 2332211
Q ss_pred CC-----CCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC-CCCccccceeeecCCcccCC-
Q 010381 394 MP-----TLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG-AGAMPKLESLIVDPCAYLRK- 466 (512)
Q Consensus 394 ~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~- 466 (512)
.+ .+..+++|+.|++++ .+.+..+... ...+++|+.|+|++|......+.. ..++++|+.|++++|+....
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHH-HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 11 144567777777764 4443333322 123788999999887532222222 25689999999999986322
Q ss_pred CCcccCCCCCCcEEEccCCh
Q 010381 467 LPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 467 lp~~~~~l~~L~~L~l~~~~ 486 (512)
++..+..+++|+.|++++|+
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHhCCCCCEEeeeCCC
Confidence 22244568999999999997
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-19 Score=166.82 Aligned_cols=209 Identities=16% Similarity=0.142 Sum_probs=140.7
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCC
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 294 (512)
.+++..+.+... .....+++|+.|+++++.++.++ .++.+++|++|++++|.+..++ .+..+++|++|++++|.+.+
T Consensus 23 ~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 23 KANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred HHHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc
Confidence 334444444422 22445667777777777776665 4667777777777777666654 56677777777777776643
Q ss_pred CCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCC
Q 010381 295 PPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQ 374 (512)
Q Consensus 295 ~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~ 374 (512)
..+. .++.+++|++|++++| .+..+..-.+..
T Consensus 100 ~~~~----------------------~~~~l~~L~~L~L~~n--------------------------~l~~~~~~~~~~ 131 (272)
T 3rfs_A 100 LPNG----------------------VFDKLTNLKELVLVEN--------------------------QLQSLPDGVFDK 131 (272)
T ss_dssp CCTT----------------------TTTTCTTCCEEECTTS--------------------------CCCCCCTTTTTT
T ss_pred cChh----------------------HhcCCcCCCEEECCCC--------------------------cCCccCHHHhcc
Confidence 2221 2334444445554444 221111004667
Q ss_pred CCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCcccc
Q 010381 375 FPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKL 453 (512)
Q Consensus 375 lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L 453 (512)
+ ++|++|++++|.+++..+..++.+++|++|++++|.+.+..... ++.+++|++|++++| .++.++ ..++.+++|
T Consensus 132 l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 132 L-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV--FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSL 207 (272)
T ss_dssp C-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred C-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH--hcCCccCCEEECCCC-cCCccCHHHHhCCcCC
Confidence 8 99999999999998777777899999999999999987654332 578999999999996 566555 446889999
Q ss_pred ceeeecCCcccCCCCcccCCCCCCcEEEccCC
Q 010381 454 ESLIVDPCAYLRKLPEELWCIQSLRKLDLHWP 485 (512)
Q Consensus 454 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~ 485 (512)
+.|++++|+... .+++|+.++++.|
T Consensus 208 ~~L~l~~N~~~~-------~~~~l~~l~~~~n 232 (272)
T 3rfs_A 208 QYIWLHDNPWDC-------TCPGIRYLSEWIN 232 (272)
T ss_dssp CEEECCSSCBCC-------CTTTTHHHHHHHH
T ss_pred CEEEccCCCccc-------cCcHHHHHHHHHH
Confidence 999999997543 3566776666554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=162.34 Aligned_cols=199 Identities=22% Similarity=0.246 Sum_probs=135.4
Q ss_pred ccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCe
Q 010381 230 LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIF 308 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 308 (512)
++++++++.++++++.++.+|..+. ++++.|++++|.+..++ ..+..+++|++|++++|.+.+ ++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~----------- 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ----------- 71 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-----------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-cc-----------
Confidence 5677888999999988888887664 68889999998887764 567888889999888887642 11
Q ss_pred eecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEeccc
Q 010381 309 VSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTE 388 (512)
Q Consensus 309 l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~ 388 (512)
. .+.+++|+.|+++++. ... +|. .+..+ ++|+.|++++|.
T Consensus 72 -----------~-~~~l~~L~~L~Ls~N~---l~~--------------------l~~----~~~~l-~~L~~L~l~~N~ 111 (290)
T 1p9a_G 72 -----------V-DGTLPVLGTLDLSHNQ---LQS--------------------LPL----LGQTL-PALTVLDVSFNR 111 (290)
T ss_dssp -----------C-CSCCTTCCEEECCSSC---CSS--------------------CCC----CTTTC-TTCCEEECCSSC
T ss_pred -----------C-CCCCCcCCEEECCCCc---CCc--------------------Cch----hhccC-CCCCEEECCCCc
Confidence 1 1455666666666651 111 232 44556 677777777777
Q ss_pred CCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC-CCCccccceeeecCCcccCCC
Q 010381 389 LKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG-AGAMPKLESLIVDPCAYLRKL 467 (512)
Q Consensus 389 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l 467 (512)
+++..+..+..+++|++|++++|.+....... +..+++|+.|++++| .++.+|.. +..+++|+.|++++|. ++.+
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~i 187 (290)
T 1p9a_G 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTI 187 (290)
T ss_dssp CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred CcccCHHHHcCCCCCCEEECCCCCCCccChhh--cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc-CCcc
Confidence 76655666777777777777777665433221 456677777777773 55666543 3567777777777776 5567
Q ss_pred CcccCCCCCCcEEEccCCh
Q 010381 468 PEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 468 p~~~~~l~~L~~L~l~~~~ 486 (512)
|..+...++|+.+++++||
T Consensus 188 p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTCCCSEEECCSCC
T ss_pred ChhhcccccCCeEEeCCCC
Confidence 7777777777777777765
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-19 Score=189.28 Aligned_cols=133 Identities=19% Similarity=0.193 Sum_probs=104.0
Q ss_pred CCCCCCchhHHHHhhhcccCCCHHHHHHHHHHcCCCCCccccCCCCHHHHHhhhcccCCCCcchhhHhh-----------
Q 010381 1 MENGEKIRLDSVLIGGPLIRLKHEAWQFFILHYGSMPLENYLQGETIPTILSRICSVLELPFHLKICCI----------- 69 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl----------- 69 (512)
|++|+|+||||+++|+.|+... .+|.+.+....+.. .. ..+.++|+ +||++||+++|.||+
T Consensus 323 ~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~--~~---~~i~~~l~--~Sy~~L~~~lk~~f~~Ls~~er~l~~ 394 (549)
T 2a5y_B 323 IELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR--GL---VGVECITP--YSYKSLAMALQRCVEVLSDEDRSALA 394 (549)
T ss_dssp HHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH--CS---STTCCCSS--SSSSSHHHHHHHHHHTSCHHHHHHTT
T ss_pred HHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc--cH---HHHHHHHh--cccccccHHHHHHHhccchhhhhHhh
Confidence 4689999999999999999222 23333333322221 11 67899999 999999999999999
Q ss_pred hhcccCCCceeCHHHHHHHHHHc--CCCC-----CChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHH
Q 010381 70 YLCVFPPSIEISTRQLYQLWEAE--GFIP-----YNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFL 142 (512)
Q Consensus 70 ~~a~fp~~~~i~~~~Li~~w~~~--g~~~-----~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~ 142 (512)
|||+||+++.|+ +++|+|+ ||+. ...++.++ +|++|++++|++....+ ....|+|||+++++++.
T Consensus 395 ~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~ 466 (549)
T 2a5y_B 395 FAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKH 466 (549)
T ss_dssp GGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHT
T ss_pred heeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHH
Confidence 999999999999 8999999 9996 23677777 99999999999988643 33679999999999999
Q ss_pred hhhhcCc
Q 010381 143 VAEKTEF 149 (512)
Q Consensus 143 ~~~~~~~ 149 (512)
++.++++
T Consensus 467 ~~~~~~~ 473 (549)
T 2a5y_B 467 VVDAQTI 473 (549)
T ss_dssp TSCTHHH
T ss_pred HHHHHHH
Confidence 8876543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-20 Score=186.88 Aligned_cols=261 Identities=13% Similarity=0.078 Sum_probs=176.4
Q ss_pred hHHhcCCCeeEEEEecCCcCC-c----cCccccCccccCeeeecCCCCc----ccChhh-------hcCcCCcEEecCCc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLD-Q----FPPGLENLFLLKYLKLNIPSLK----CLPSQL-------CTLLNLQTLQMPSS 267 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~-~----lp~~l~~l~~L~~L~l~~~~i~----~lp~~~-------~~l~~L~~L~L~~~ 267 (512)
..+ ..+++|++|++++|.++ . ++..+..+++|++|++++|.+. .+|..+ ..+++|++|+|++|
T Consensus 26 ~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 444 77888999999988877 2 4455778888999988886443 344444 67888888888888
Q ss_pred cccc-----cchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCC---------CCCCeEEE
Q 010381 268 YIDQ-----SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRL---------PNIQTLRI 333 (512)
Q Consensus 268 ~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l---------~~L~~L~l 333 (512)
.++. +|..+.++++|++|++++|.+....+ ..++..+..+ ++|++|++
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~------------------~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG------------------AKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH------------------HHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH------------------HHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 7765 67778888888888888887632111 1222334444 89999999
Q ss_pred eccch--hhhhhHHHhccCCCCCcEEEeccCCCCC--Cccc---CcCCCCCCccEEEEecccCC----CCCCCCCCCCcc
Q 010381 334 SGDLS--YYQSRVSKSLCKLQKLEWLKLVNESKPS--RMVL---SEYQFPPSLTHLSLSNTELK----EDPMPTLEKLPY 402 (512)
Q Consensus 334 ~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~~p~--L~~l---~~~~lp~~L~~L~L~~~~~~----~~~~~~l~~l~~ 402 (512)
++|.- .....+...+..+++|+.|++++|.+.. +..+ .+..+ ++|+.|+|++|.++ ...+..+..+++
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 98841 1223334677888899999999987641 0001 45567 89999999999875 344556788899
Q ss_pred cceeEEEcccccCcee----eeeCCCCCccccEEEecCCCCcce-----eeeCC-CCccccceeeecCCcccCCCC--cc
Q 010381 403 VQVLKLKQNSYLGRKL----ACVGSGGFPELKVLHLKSMYWLDE-----WTMGA-GAMPKLESLIVDPCAYLRKLP--EE 470 (512)
Q Consensus 403 L~~L~l~~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~~lp--~~ 470 (512)
|++|++++|.+.+... .....+.+++|++|+|++|. ++. +|..+ ..+++|+.|++++|+.....+ ..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~ 324 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 324 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHH
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHH
Confidence 9999999888765421 11001447899999999864 443 66655 558999999999998655443 11
Q ss_pred -cCCCCCCcEEEccCC
Q 010381 471 -LWCIQSLRKLDLHWP 485 (512)
Q Consensus 471 -~~~l~~L~~L~l~~~ 485 (512)
...+++++..++...
T Consensus 325 l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 325 IREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHHTCCEECCC
T ss_pred HHHHhhhcCcchhhhc
Confidence 123455555555443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=165.17 Aligned_cols=192 Identities=20% Similarity=0.227 Sum_probs=146.1
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
.+++|++|.+.++.+. .++.+ ..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .++.+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-----~l~~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-----TIEGV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCcc-----Cchhh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 4677888888877665 33445 778888888888888887766 788888888888888888775 677888888
Q ss_pred EEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchh
Q 010381 261 TLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSY 339 (512)
Q Consensus 261 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~ 339 (512)
+|++++|.+..++. +..+++|++|++++|.+.+. +. ++.+++|+.|++++ .+...+. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-- 184 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-- 184 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc--
Confidence 88888888877765 77888888888888887543 32 77888888888875 3233333 8888999999998883
Q ss_pred hhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC
Q 010381 340 YQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE 391 (512)
Q Consensus 340 ~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~ 391 (512)
. ..++. +..+++|+.|++++|.+..+. .+..+ ++|+.|++++|.+++
T Consensus 185 l-~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l-~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 I-SDISP-LASLPNLIEVHLKNNQISDVS--PLANT-SNLFIVTLTNQTITN 231 (308)
T ss_dssp C-CCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTC-TTCCEEEEEEEEEEC
T ss_pred c-CcChh-hcCCCCCCEEEccCCccCccc--cccCC-CCCCEEEccCCeeec
Confidence 2 22222 778899999999998876554 45678 999999999998865
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=157.07 Aligned_cols=204 Identities=20% Similarity=0.249 Sum_probs=139.0
Q ss_pred CCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCcc-ccccch-hhhccccCceeecCC-cccCCCCCC
Q 010381 223 LDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSY-IDQSPE-DIWMMQKLMHLNFGS-ITLPAPPTN 298 (512)
Q Consensus 223 l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~~~p~ 298 (512)
++.+|. +. .+|++|++++|.++.+|. .++++++|++|++++|. ++.++. .+.++++|++|++++ |.+..
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---- 95 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---- 95 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----
Confidence 556665 33 267777777777776655 46667777777777774 666664 456677777777766 55421
Q ss_pred CCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCC
Q 010381 299 YSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPS 378 (512)
Q Consensus 299 ~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~ 378 (512)
..+..+..+++|+.|+++++ .+..+. .+..+ ++
T Consensus 96 ------------------i~~~~f~~l~~L~~L~l~~n--------------------------~l~~lp--~~~~l-~~ 128 (239)
T 2xwt_C 96 ------------------IDPDALKELPLLKFLGIFNT--------------------------GLKMFP--DLTKV-YS 128 (239)
T ss_dssp ------------------ECTTSEECCTTCCEEEEEEE--------------------------CCCSCC--CCTTC-CB
T ss_pred ------------------cCHHHhCCCCCCCEEeCCCC--------------------------CCcccc--ccccc-cc
Confidence 11223455666777777766 211111 12233 44
Q ss_pred cc---EEEEecc-cCCCCCCCCCCCCcccc-eeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCc-c
Q 010381 379 LT---HLSLSNT-ELKEDPMPTLEKLPYVQ-VLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAM-P 451 (512)
Q Consensus 379 L~---~L~L~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l-~ 451 (512)
|+ .|++++| .+....+..+..+++|+ +|++++|.+. ..+... +.. ++|+.|++++|..++.++ ..+..+ +
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~-~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA-FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT-TTT-CEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh-cCC-CCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 44 9999999 88766667789999999 9999988876 333322 334 799999999965688776 456778 9
Q ss_pred ccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 452 KLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 452 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|+.|++++|. ++.+|.. .+++|+.|++.++.
T Consensus 206 ~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 206 GPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 99999999987 5677765 78999999999875
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-20 Score=183.59 Aligned_cols=256 Identities=14% Similarity=0.083 Sum_probs=171.7
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC----ccCccc-------cCccccCeeeecCCCCcc-
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD----QFPPGL-------ENLFLLKYLKLNIPSLKC- 248 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~----~lp~~l-------~~l~~L~~L~l~~~~i~~- 248 (512)
.+++|++|.+.+|.+.......+...+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 67889999998887764222234333378889999999887543 344444 678899999999988875
Q ss_pred ----cChhhhcCcCCcEEecCCccccc-----cchhhhcc---------ccCceeecCCcccCCCCCCCCCCCCCCCeee
Q 010381 249 ----LPSQLCTLLNLQTLQMPSSYIDQ-----SPEDIWMM---------QKLMHLNFGSITLPAPPTNYSSSLKNLIFVS 310 (512)
Q Consensus 249 ----lp~~~~~l~~L~~L~L~~~~~~~-----lp~~i~~l---------~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 310 (512)
+|..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|.+....
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~-------------- 175 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS-------------- 175 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG--------------
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH--------------
Confidence 77788888999999999987753 33334445 88888888888764100
Q ss_pred cCCCCccCchhcCCCCCCCeEEEeccchh--hhhhHHH-hccCCCCCcEEEeccCCC--------CCCcccCcCCCCCCc
Q 010381 311 ALHPISCTPDILGRLPNIQTLRISGDLSY--YQSRVSK-SLCKLQKLEWLKLVNESK--------PSRMVLSEYQFPPSL 379 (512)
Q Consensus 311 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~-~l~~l~~L~~L~l~~~~~--------p~L~~l~~~~lp~~L 379 (512)
+..+...+..+++|++|++++|.-. ....+.. .+..+++|+.|++++|.+ |. .+..+ ++|
T Consensus 176 ----~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~-~~L 246 (386)
T 2ca6_A 176 ----MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSW-PNL 246 (386)
T ss_dssp ----HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGC-TTC
T ss_pred ----HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH----HHccC-CCc
Confidence 0112246677888999999888411 1112333 778888999999998876 23 45677 889
Q ss_pred cEEEEecccCCCC----CCCCC--CCCcccceeEEEcccccCc----eeeeeCCCCCccccEEEecCCCCcceee---eC
Q 010381 380 THLSLSNTELKED----PMPTL--EKLPYVQVLKLKQNSYLGR----KLACVGSGGFPELKVLHLKSMYWLDEWT---MG 446 (512)
Q Consensus 380 ~~L~L~~~~~~~~----~~~~l--~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~~l~~l~---~~ 446 (512)
++|+|++|.+++. .+..+ +.+++|++|++++|.+.+. .+... ..++++|++|++++|......+ ..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~l~~~~~~~~~l 325 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNGNRFSEEDDVVDEI 325 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTTSBSCTTSHHHHHH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccCCcCCcchhHHHHH
Confidence 9999999887653 23344 3488899999998888762 33221 2457899999998865333221 11
Q ss_pred CCCccccceeeecC
Q 010381 447 AGAMPKLESLIVDP 460 (512)
Q Consensus 447 ~~~l~~L~~L~l~~ 460 (512)
...+++++.+.+..
T Consensus 326 ~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 326 REVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHTCCEECC
T ss_pred HHHhhhcCcchhhh
Confidence 23456666555544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-20 Score=180.27 Aligned_cols=247 Identities=18% Similarity=0.182 Sum_probs=179.6
Q ss_pred cCCCeeEEEEecCCcCCccCccccCc--cccCeeeecCCCCcccChhhhcCcCCcEEecCCccccc--cchhhhccccCc
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENL--FLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ--SPEDIWMMQKLM 283 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~ 283 (512)
.....++.++++++.+. +..+..+ .++++|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|+
T Consensus 44 ~~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 44 SDESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TCSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred cCchhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 33445788888888776 3455666 78999999999888666667789999999999997653 777788999999
Q ss_pred eeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccC-
Q 010381 284 HLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE- 362 (512)
Q Consensus 284 ~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~- 362 (512)
+|++++|.+. ...+..++.+++|++|++++|.......++..+..+++|+.|++++|
T Consensus 122 ~L~L~~~~l~----------------------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 122 NLSLEGLRLS----------------------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp EEECTTCBCC----------------------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred EEeCcCcccC----------------------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 9999988764 44566677888999999988831223357777889999999999998
Q ss_pred CCCC--CcccCcCCCCC-CccEEEEecc--cCC-CCCCCCCCCCcccceeEEEccc-ccCceeeeeCCCCCccccEEEec
Q 010381 363 SKPS--RMVLSEYQFPP-SLTHLSLSNT--ELK-EDPMPTLEKLPYVQVLKLKQNS-YLGRKLACVGSGGFPELKVLHLK 435 (512)
Q Consensus 363 ~~p~--L~~l~~~~lp~-~L~~L~L~~~--~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~L~ 435 (512)
.+.. +.. .+..+ + +|++|++++| .++ ...+..+..+++|++|++++|. +.+..+.. +..+++|++|+++
T Consensus 180 ~l~~~~~~~-~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~l~ 255 (336)
T 2ast_B 180 DFTEKHVQV-AVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLS 255 (336)
T ss_dssp TCCHHHHHH-HHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG--GGGCTTCCEEECT
T ss_pred CcChHHHHH-HHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH--HhCCCCCCEeeCC
Confidence 6542 000 35677 7 9999999999 444 2334456789999999999998 55554443 5778999999999
Q ss_pred CCCCcc-eeeeCCCCccccceeeecCCcccCCCCcccCCC-CCCcEEEccCCh
Q 010381 436 SMYWLD-EWTMGAGAMPKLESLIVDPCAYLRKLPEELWCI-QSLRKLDLHWPQ 486 (512)
Q Consensus 436 ~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~L~l~~~~ 486 (512)
+|..+. .....++.+++|+.|++++| +.. ..+..+ .+|+.|++++|.
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~--~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI--VPD--GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS--SCT--TCHHHHHHHSTTSEESCCC
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc--cCH--HHHHHHHhhCcceEEeccc
Confidence 986443 11224678999999999999 221 122223 235555677665
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=156.86 Aligned_cols=197 Identities=21% Similarity=0.254 Sum_probs=115.1
Q ss_pred ccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 235 LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
+.++++++++.++.+|..+. ++|++|++++|.+..+|. .+.++++|++|++++|.+.. +|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~---------------- 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LP---------------- 77 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CC----------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eC----------------
Confidence 47788888888888876554 678888888887777764 57778888888888777641 11
Q ss_pred CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCC
Q 010381 314 PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDP 393 (512)
Q Consensus 314 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~ 393 (512)
+..+..+++|++|+++++. .....+. .+..+ ++|++|++++|.++...
T Consensus 78 -----~~~~~~l~~L~~L~l~~n~--l~~~~~~------------------------~~~~l-~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 78 -----AGIFKELKNLETLWVTDNK--LQALPIG------------------------VFDQL-VNLAELRLDRNQLKSLP 125 (270)
T ss_dssp -----TTTTSSCTTCCEEECCSSC--CCCCCTT------------------------TTTTC-SSCCEEECCSSCCCCCC
T ss_pred -----hhhhcCCCCCCEEECCCCc--CCcCCHh------------------------Hcccc-cCCCEEECCCCccCeeC
Confidence 1224567777888887762 2111112 23344 55555555555555544
Q ss_pred CCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeee-CCCCccccceeeecCCcccCCCCc-cc
Q 010381 394 MPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTM-GAGAMPKLESLIVDPCAYLRKLPE-EL 471 (512)
Q Consensus 394 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~-~~ 471 (512)
+..++.+++|++|++++|.+.+..... +..+++|+.|++++| .++.++. .+..+++|+.|++++|. ++.+|. .+
T Consensus 126 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 201 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYNELQSLPKGV--FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAF 201 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred HHHhCcCcCCCEEECCCCcCCccCHhH--ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHh
Confidence 445555666666666655554322211 345566666666653 3444432 34555666666666664 333333 35
Q ss_pred CCCCCCcEEEccCCh
Q 010381 472 WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 472 ~~l~~L~~L~l~~~~ 486 (512)
..+++|+.|++++||
T Consensus 202 ~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 202 DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEecCCC
Confidence 556666666666654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-18 Score=157.53 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=137.2
Q ss_pred CeeEEEEecCCcCCccCc-cccCccccCeeeecCCC-CcccCh-hhhcCcCCcEEecCC-ccccccch-hhhccccCcee
Q 010381 211 KYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPS-LKCLPS-QLCTLLNLQTLQMPS-SYIDQSPE-DIWMMQKLMHL 285 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~L~~-~~~~~lp~-~i~~l~~L~~L 285 (512)
+.|++|++++|.++.+|. .++.+++|++|++++|. ++.+|. .++++++|++|++++ |.++.+|. .+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999997775 78999999999999997 987776 688999999999998 79988874 57899999999
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCC---eEEEeccchhhhhhHHHhccCCCCCcEEEeccC
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQ---TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE 362 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 362 (512)
++++|.+.+ +|. ++.+++|+ .|+++++. ....++
T Consensus 111 ~l~~n~l~~-lp~-----------------------~~~l~~L~~L~~L~l~~N~--~l~~i~----------------- 147 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-----------------------LTKVYSTDIFFILEITDNP--YMTSIP----------------- 147 (239)
T ss_dssp EEEEECCCS-CCC-----------------------CTTCCBCCSEEEEEEESCT--TCCEEC-----------------
T ss_pred eCCCCCCcc-ccc-----------------------cccccccccccEEECCCCc--chhhcC-----------------
Confidence 999998753 332 33444454 78887761 111111
Q ss_pred CCCCCcccCcCCCCCCcc-EEEEecccCCCCCCCCCCCCcccceeEEEccc-ccCceeeeeCCCCC-ccccEEEecCCCC
Q 010381 363 SKPSRMVLSEYQFPPSLT-HLSLSNTELKEDPMPTLEKLPYVQVLKLKQNS-YLGRKLACVGSGGF-PELKVLHLKSMYW 439 (512)
Q Consensus 363 ~~p~L~~l~~~~lp~~L~-~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~-~~L~~L~L~~~~~ 439 (512)
+. .+..+ ++|+ .|++++|.++..+...+.. ++|++|++++|. +... +... +.++ ++|+.|++++ +.
T Consensus 148 --~~----~~~~l-~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i-~~~~-~~~l~~~L~~L~l~~-N~ 216 (239)
T 2xwt_C 148 --VN----AFQGL-CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVI-DKDA-FGGVYSGPSLLDVSQ-TS 216 (239)
T ss_dssp --TT----TTTTT-BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEE-CTTT-TTTCSBCCSEEECTT-CC
T ss_pred --cc----cccch-hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccC-CHHH-hhccccCCcEEECCC-Cc
Confidence 11 34455 6667 7777777665333333444 677777777774 5432 2222 5666 7778888877 45
Q ss_pred cceeeeCCCCccccceeeecCCc
Q 010381 440 LDEWTMGAGAMPKLESLIVDPCA 462 (512)
Q Consensus 440 l~~l~~~~~~l~~L~~L~l~~c~ 462 (512)
++.+|.. .+++|+.|+++++.
T Consensus 217 l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 217 VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCCT--TCTTCSEEECTTC-
T ss_pred cccCChh--HhccCceeeccCcc
Confidence 6666653 67778887777764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=163.48 Aligned_cols=230 Identities=17% Similarity=0.122 Sum_probs=146.6
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC-ccCccc--cCccccCeeeecCCCCcc-cC----hh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD-QFPPGL--ENLFLLKYLKLNIPSLKC-LP----SQ 252 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~lp~~l--~~l~~L~~L~l~~~~i~~-lp----~~ 252 (512)
....++.+.+.+..........+..+ ..+++|++|++++|.++ ..|..+ ..+++|++|++++|.++. .| ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 34456777777666542111122222 23455888888888876 566666 777888888888887773 22 23
Q ss_pred hhcCcCCcEEecCCccccccc-hhhhccccCceeecCCcccCCC--CCCCCCCCCCCCeeecCCCCccCchhcCCCCCCC
Q 010381 253 LCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAP--PTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQ 329 (512)
Q Consensus 253 ~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~ 329 (512)
+..+++|++|++++|.+..++ ..++.+++|++|++++|.+.+. ++ ....++.+++|+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------------~~~~~~~l~~L~ 200 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM--------------------AALCPHKFPAIQ 200 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH--------------------TTSCTTSSCCCC
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhh--------------------HHHhhhcCCCCC
Confidence 345777777777777666554 4566777777777777765321 10 011225667777
Q ss_pred eEEEeccchhhhhhHHH-hccCCCCCcEEEeccCCCCCCcccCcCCC--CCCccEEEEecccCCCCCCCCCCCCccccee
Q 010381 330 TLRISGDLSYYQSRVSK-SLCKLQKLEWLKLVNESKPSRMVLSEYQF--PPSLTHLSLSNTELKEDPMPTLEKLPYVQVL 406 (512)
Q Consensus 330 ~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~p~L~~l~~~~l--p~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 406 (512)
+|++++|.-......+. .+..+++|+.|++++|.+..+..-.+..+ +++|++|++++|.++ ..|..+. ++|++|
T Consensus 201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 77777773111122233 35678899999999987643210023333 169999999999987 4555553 799999
Q ss_pred EEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 407 KLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
++++|.+.+.. . ...+++|+.|++++++
T Consensus 278 ~Ls~N~l~~~~-~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 278 DLSSNRLNRAP-Q---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSCCCCSCC-C---TTSCCCCSCEECSSTT
T ss_pred ECCCCcCCCCc-h---hhhCCCccEEECcCCC
Confidence 99999987642 1 4678999999999854
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-18 Score=171.24 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=57.7
Q ss_pred hHHhcCCCeeEEEEecCCcCCccC-----ccccCcc-ccCeeeecCCCCccc-ChhhhcC-----cCCcEEecCCccccc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFP-----PGLENLF-LLKYLKLNIPSLKCL-PSQLCTL-----LNLQTLQMPSSYIDQ 271 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp-----~~l~~l~-~L~~L~l~~~~i~~l-p~~~~~l-----~~L~~L~L~~~~~~~ 271 (512)
+.+....++|++|++++|.++..+ ..+..++ +|++|++++|.++.. +..++.+ ++|++|++++|.++.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 555455556777777777776444 4566666 777777777777633 4445543 777777777776654
Q ss_pred cch-h----hhcc-ccCceeecCCcccCC
Q 010381 272 SPE-D----IWMM-QKLMHLNFGSITLPA 294 (512)
Q Consensus 272 lp~-~----i~~l-~~L~~L~l~~~~~~~ 294 (512)
.+. . +..+ ++|++|++++|.+..
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 432 2 3333 677777777777653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-20 Score=194.04 Aligned_cols=298 Identities=17% Similarity=0.098 Sum_probs=179.0
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCC-cCC--ccCccccCccccCeeeecCCCCcc-----cChh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSA-VLD--QFPPGLENLFLLKYLKLNIPSLKC-----LPSQ 252 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~--~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~ 252 (512)
.+++|++|.+.++.... ..+..+...+++|++|++++| .++ .++..+..+++|++|++++|.++. ++..
T Consensus 103 ~~~~L~~L~L~~~~~~~---~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTD---DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBCCH---HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcEEcH---HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 57899999999987653 223555346899999999999 465 355656689999999999998663 3333
Q ss_pred hhcCcCCcEEecCCcc--c--cccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC---------------
Q 010381 253 LCTLLNLQTLQMPSSY--I--DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH--------------- 313 (512)
Q Consensus 253 ~~~l~~L~~L~L~~~~--~--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~--------------- 313 (512)
...+++|++|++++|. + ..++..+.++++|++|++++|.....+|..+.++++|+.+++..
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 3467899999999986 2 22333345689999999999843333455555666666665321
Q ss_pred -----------------CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccC-----------CCC
Q 010381 314 -----------------PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE-----------SKP 365 (512)
Q Consensus 314 -----------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-----------~~p 365 (512)
....++..+..+++|++|++++|. .....+...+..+++|+.|+++++ .+|
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC
Confidence 001223333467889999998884 222334555778899999999875 123
Q ss_pred CCcccCc-----------------------CCCCCCccEEEEecccCCCCCCCCCC-CCcccceeEEE--c----ccccC
Q 010381 366 SRMVLSE-----------------------YQFPPSLTHLSLSNTELKEDPMPTLE-KLPYVQVLKLK--Q----NSYLG 415 (512)
Q Consensus 366 ~L~~l~~-----------------------~~lp~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~--~----~~~~~ 415 (512)
+|+.|.+ ..+ ++|++|.+..+.+++..+..+. .+++|+.|+++ + +.+++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 4443322 013 4455554444444332222222 35556666665 2 22221
Q ss_pred ----ceeeeeCCCCCccccEEEecCCCCcc-eeeeCCC-CccccceeeecCCcccCCCCccc-CCCCCCcEEEccCCh
Q 010381 416 ----RKLACVGSGGFPELKVLHLKSMYWLD-EWTMGAG-AMPKLESLIVDPCAYLRKLPEEL-WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 416 ----~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~-~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~ 486 (512)
..+... +.++++|+.|++++ .++ ..+..++ .+++|+.|++++|......+..+ ..+++|++|++++|+
T Consensus 418 ~~~~~~~~~l-~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 418 EPLDIGFGAI-VEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp CCTHHHHHHH-HHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred CchhhHHHHH-HhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 011111 23355666666654 222 1111122 37788888888887433222222 568999999999997
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-19 Score=175.28 Aligned_cols=250 Identities=13% Similarity=0.103 Sum_probs=163.3
Q ss_pred EEEecCCcCC-ccCccccCccccCeeeecCCCCcccC-----hhhhcCc-CCcEEecCCcccccc-chhhhcc-----cc
Q 010381 215 VLDLGSAVLD-QFPPGLENLFLLKYLKLNIPSLKCLP-----SQLCTLL-NLQTLQMPSSYIDQS-PEDIWMM-----QK 281 (512)
Q Consensus 215 ~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp-----~~~~~l~-~L~~L~L~~~~~~~l-p~~i~~l-----~~ 281 (512)
.++++.+.++ .+|..+....+|++|++++|.++..+ ..+..++ +|++|++++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3678888888 55666666667999999999999666 5677888 899999999988765 4456554 99
Q ss_pred CceeecCCcccCCCCCCC----CCCC-CCCCeeecCC-CCccC-c----hhcCC-CCCCCeEEEeccc--hhhhhhHHHh
Q 010381 282 LMHLNFGSITLPAPPTNY----SSSL-KNLIFVSALH-PISCT-P----DILGR-LPNIQTLRISGDL--SYYQSRVSKS 347 (512)
Q Consensus 282 L~~L~l~~~~~~~~~p~~----~~~l-~~L~~l~l~~-~~~~~-~----~~l~~-l~~L~~L~l~~~~--~~~~~~l~~~ 347 (512)
|++|++++|.+....+.. +..+ ++|+.|++++ .+... + ..+.. .++|++|++++|. ......++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987655543 3333 7788888875 21111 1 22334 3588888888773 1122355666
Q ss_pred ccCCC-CCcEEEeccCCCCCCcc--c--CcCCCCCCccEEEEecccCCCCCC----CCCCC-CcccceeEEEcccccCce
Q 010381 348 LCKLQ-KLEWLKLVNESKPSRMV--L--SEYQFPPSLTHLSLSNTELKEDPM----PTLEK-LPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 348 l~~l~-~L~~L~l~~~~~p~L~~--l--~~~~lp~~L~~L~L~~~~~~~~~~----~~l~~-l~~L~~L~l~~~~~~~~~ 417 (512)
+..++ +|+.|++++|.+..... + .+..+|++|++|+|++|.+.+... ..+.. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 66665 88888888876532110 0 122342478888888887764322 22333 347888888887776543
Q ss_pred e---eeeCCCCCccccEEEecCCC-------CcceeeeCCCCccccceeeecCCcccC
Q 010381 418 L---ACVGSGGFPELKVLHLKSMY-------WLDEWTMGAGAMPKLESLIVDPCAYLR 465 (512)
Q Consensus 418 ~---~~~~~~~~~~L~~L~L~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~~l~ 465 (512)
. ... ...+++|++|++++|. .+..++..+..+++|+.|++++|+.-.
T Consensus 242 ~~~l~~~-~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 242 LENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHHHT-TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHH-HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 2 122 4667778888887754 022344456677778888888877433
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=160.67 Aligned_cols=237 Identities=16% Similarity=0.101 Sum_probs=109.3
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccc-cccch-hhhccccCce-eecCC
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYI-DQSPE-DIWMMQKLMH-LNFGS 289 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~-~~lp~-~i~~l~~L~~-L~l~~ 289 (512)
++++.+++.++++|..+ .+++++|+|++|+|+.+|. .++++++|++|+|++|.+ +.+|. .+.+++++++ +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 34555666666666554 2456666666666666664 356666666666666654 33443 2455666554 33344
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccCc-hhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCTP-DILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
|.+....|..+..+++|+.+++.+ .+...+ .......++..|++.++ .....++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~--~~i~~l~~~-------------------- 147 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN--INIHTIERN-------------------- 147 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC--TTCCEECTT--------------------
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc--ccccccccc--------------------
Confidence 444433344455555555555543 111111 11223334445555543 122222111
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA 447 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 447 (512)
.+..++..++.|++++|.++...+ ......+|++|.+.+++..+..+... +.++++|++|++++ +.++.+|.
T Consensus 148 ---~f~~~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~-N~l~~lp~-- 219 (350)
T 4ay9_X 148 ---SFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISR-TRIHSLPS-- 219 (350)
T ss_dssp ---SSTTSBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTT-SCCCCCCS--
T ss_pred ---chhhcchhhhhhccccccccCCCh-hhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCC-CCcCccCh--
Confidence 122221344455555555442222 22223445555554333222222221 34455555555555 23444443
Q ss_pred CCccccceeeecCCcccCCCCcccCCCCCCcEEEcc
Q 010381 448 GAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483 (512)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 483 (512)
+.+.+|+.|.+.+|..++.+|. +..+++|+.+++.
T Consensus 220 ~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 220 YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 2344455555555555555553 4455555555554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=160.93 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=94.8
Q ss_pred CeeEEEEecCCcCC--ccCc--cccCccccCeeeecCCCCc-ccChhh--hcCcCCcEEecCCcccccc-c----hhhhc
Q 010381 211 KYLRVLDLGSAVLD--QFPP--GLENLFLLKYLKLNIPSLK-CLPSQL--CTLLNLQTLQMPSSYIDQS-P----EDIWM 278 (512)
Q Consensus 211 ~~L~~L~l~~~~l~--~lp~--~l~~l~~L~~L~l~~~~i~-~lp~~~--~~l~~L~~L~L~~~~~~~l-p----~~i~~ 278 (512)
..++.+.+.++.++ .+.. .+..+++|++|++++|.+. ..|..+ +.+++|++|++++|.+... + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34666777776654 1111 1223456777888777776 555555 6777777777777766532 2 23446
Q ss_pred cccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHh--ccCCCCCcE
Q 010381 279 MQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKS--LCKLQKLEW 356 (512)
Q Consensus 279 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~--l~~l~~L~~ 356 (512)
+++|++|++++|.+.+..| ..++.+++|++|++++|.-.....++.. +..+++|+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSC----------------------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp CSCCCEEEEECCSSCCCCT----------------------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred ccCCCEEEeeCCCcchhhH----------------------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 7777777777777643333 3344555566666666520011112222 245556666
Q ss_pred EEeccCCCCCCccc---CcCCCCCCccEEEEecccCCCCCCCCCCCC---cccceeEEEccccc
Q 010381 357 LKLVNESKPSRMVL---SEYQFPPSLTHLSLSNTELKEDPMPTLEKL---PYVQVLKLKQNSYL 414 (512)
Q Consensus 357 L~l~~~~~p~L~~l---~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~ 414 (512)
|++++|.+..+... .+..+ ++|++|++++|.+.+..|..+..+ ++|++|++++|.+.
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred EECCCCCCCchHHHHHHHHhcC-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 66666555321110 02344 555555555555554434443333 34555555544443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=146.84 Aligned_cols=178 Identities=21% Similarity=0.201 Sum_probs=108.7
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchh-hhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~ 288 (512)
...++++++++.++.+|..+. .+|++|++++|.++.++. .++++++|++|++++|.+..++.. +..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345678888888888887665 578888888888885543 577888888888888877766543 6778888888888
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
+|.+.+..+..+..+++|+.|+++ ++. .....+..+..+++|+.|++++|.+..+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~----------------------~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLG----------------------GNQ--LKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECC----------------------SSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcC----------------------CCc--CCCcChhHhccCCcccEEECcCCcCCccC
Confidence 888764444444455555555444 331 11111111233444444444444332211
Q ss_pred ccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC
Q 010381 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
.-.+..+ ++|+.|+|++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 148 ~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 148 AGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 1134455 666666666666665555566666677777776666543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.4e-17 Score=153.51 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=84.5
Q ss_pred CCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecC
Q 010381 209 KFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 209 ~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 288 (512)
.+++|+.|++++|.++.++. +..+++|++|++++|.++.++. ++.+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 34555555666655554432 5555666666666666555544 5556666666666665555443 5555666666666
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
+|.+.. + ..+. .+++|+.|++++|. .. .+ ..+..+++|+.|++++|.+..+.
T Consensus 121 ~n~i~~-~-~~l~----------------------~l~~L~~L~l~~n~--l~-~~-~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 121 HNGISD-I-NGLV----------------------HLPQLESLYLGNNK--IT-DI-TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp TSCCCC-C-GGGG----------------------GCTTCCEEECCSSC--CC-CC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCC-C-hhhc----------------------CCCCCCEEEccCCc--CC-cc-hhhccCCCCCEEEccCCccccch
Confidence 555532 1 1223 33333333333331 11 11 23334444444444444443322
Q ss_pred ccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC
Q 010381 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
.+..+ ++|+.|++++|.+++. +.+..+++|+.|++++|.+..
T Consensus 173 --~l~~l-~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 --PLAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GGTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred --hhcCC-CccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 23444 5555555555555431 235556666666666555543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-16 Score=163.91 Aligned_cols=151 Identities=24% Similarity=0.276 Sum_probs=66.7
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
..+++|+.|+|++|.++.++. +..+++|++|+|++|.++.+| .++.+++|++|+|++|.+..++ .+..+++|+.|++
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL 138 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEEC
T ss_pred ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEEC
Confidence 344444444444444443333 444444444444444444333 3444444444444444443332 2444444444444
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
++|.+.+ . ..+..+++|+.|++++|. .....| +..+++|+.|+|++|.+..+
T Consensus 139 s~N~l~~-----------------------l-~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 139 GNNKITD-----------------------I-TVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CSSCCCC-----------------------C-GGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCccCC-----------------------c-hhhcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcCCCCCCC
Confidence 4443321 1 334445555555555541 211112 44555555555555544433
Q ss_pred cccCcCCCCCCccEEEEecccCCCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKED 392 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~ 392 (512)
. .+..+ ++|+.|+|++|.+...
T Consensus 191 ~--~l~~l-~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 R--ALAGL-KNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GGTTC-TTCSEEECCSEEEECC
T ss_pred h--HHccC-CCCCEEEccCCcCcCC
Confidence 3 34445 5555666655555443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=142.66 Aligned_cols=176 Identities=19% Similarity=0.161 Sum_probs=113.8
Q ss_pred cccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecC
Q 010381 234 FLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 234 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
...++++++++.++.+|..+. ++++.|++++|.+..++. .+.++++|++|++++|.+.+..|..+.+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------- 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------- 83 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--------
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC--------
Confidence 457888999998888887765 689999999998877654 578889999999999888654444444444
Q ss_pred CCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCC
Q 010381 313 HPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKED 392 (512)
Q Consensus 313 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~ 392 (512)
+|+.|+++++ ......+..+..+++|+.|++++|.+..+..-.+..+ ++|+.|++++|.+++.
T Consensus 84 --------------~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 84 --------------ELGTLGLANN--QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELRLNTNQLQSI 146 (251)
T ss_dssp --------------TCCEEECTTS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCC
T ss_pred --------------cCCEEECCCC--cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC-CcccEEECcCCcCCcc
Confidence 4444444444 1211112334566677777777766543221134556 6777777777776655
Q ss_pred CCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 393 PMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 393 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
.+..++.+++|++|++++|.+.+..... +..+++|+.|++++|+
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGA--FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSCC
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCc
Confidence 5556667777777777777665433222 4566677777776643
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=136.94 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=90.8
Q ss_pred cCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeee
Q 010381 231 ENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS 310 (512)
Q Consensus 231 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 310 (512)
+.+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+....|..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~----------- 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN----------- 107 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC-----------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh-----------
Confidence 45666777777777777666 5667777777777777555544 4666777777777777664333333
Q ss_pred cCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCC-CCCCcccCcCCCCCCccEEEEecccC
Q 010381 311 ALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNES-KPSRMVLSEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 311 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-~p~L~~l~~~~lp~~L~~L~L~~~~~ 389 (512)
++.+++|+.|++++| ......+..+..+++|+.|++++|. +..+. .+..+ ++|+.|++++|.+
T Consensus 108 -----------l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l-~~L~~L~l~~n~i 171 (197)
T 4ezg_A 108 -----------LSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTL-PELKSLNIQFDGV 171 (197)
T ss_dssp -----------CTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGC-SSCCEEECTTBCC
T ss_pred -----------hcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCC-CCCCEEECCCCCC
Confidence 334444445555444 2333344455555566666666554 44333 44556 7777777777776
Q ss_pred CCCCCCCCCCCcccceeEEEccccc
Q 010381 390 KEDPMPTLEKLPYVQVLKLKQNSYL 414 (512)
Q Consensus 390 ~~~~~~~l~~l~~L~~L~l~~~~~~ 414 (512)
.+ . ..+..+++|+.|++++|.+.
T Consensus 172 ~~-~-~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HD-Y-RGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CC-C-TTGGGCSSCCEEEECBC---
T ss_pred cC-h-HHhccCCCCCEEEeeCcccC
Confidence 54 2 26667777777777777653
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=158.13 Aligned_cols=179 Identities=17% Similarity=0.192 Sum_probs=110.1
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcc
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~ 291 (512)
+|+.|++++|.++.+|..+. ++|++|++++|.++.+| +.+++|++|++++|.++.+|. +.+ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 67788888887777776553 67888888888888777 456788888888887777776 544 78888888887
Q ss_pred cCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
+.+ +|. .+++|+.|++++ .+..++. .+++|+.|++++|. ...+|. +. ++|+.|++++|.+..+..
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~---L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ---LTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC---CCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 764 554 566667777664 2223332 45566666666662 222333 32 566666666655443211
Q ss_pred CcCCCCCCc-------cEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce
Q 010381 371 SEYQFPPSL-------THLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 371 ~~~~lp~~L-------~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
++.+| +.|+|++|.++ .+|..+..+++|+.|++++|.+.+..
T Consensus 198 ----~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 198 ----VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp ----CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred ----HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 21344 66666666665 34444555666666666666655443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=143.74 Aligned_cols=182 Identities=19% Similarity=0.194 Sum_probs=139.1
Q ss_pred EecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCC
Q 010381 217 DLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPP 296 (512)
Q Consensus 217 ~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 296 (512)
.+....++... .+..+++|++|++++|.++.++ .++.+++|++|++++|.+..++. +.++++|++|++++|.+..
T Consensus 30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-- 104 (291)
T 1h6t_A 30 NLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-- 104 (291)
T ss_dssp HTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--
T ss_pred HhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--
Confidence 34444444321 2456788888888888888776 47888888888888888888776 8888888888888887642
Q ss_pred CCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCC
Q 010381 297 TNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFP 376 (512)
Q Consensus 297 p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp 376 (512)
+..+..+++|+.|++++|. .. .+ ..+..+++|+.|++++|.+..+. .+..+
T Consensus 105 ----------------------~~~l~~l~~L~~L~L~~n~--i~-~~-~~l~~l~~L~~L~l~~n~l~~~~--~l~~l- 155 (291)
T 1h6t_A 105 ----------------------LSSLKDLKKLKSLSLEHNG--IS-DI-NGLVHLPQLESLYLGNNKITDIT--VLSRL- 155 (291)
T ss_dssp ----------------------GGGGTTCTTCCEEECTTSC--CC-CC-GGGGGCTTCCEEECCSSCCCCCG--GGGGC-
T ss_pred ----------------------ChhhccCCCCCEEECCCCc--CC-CC-hhhcCCCCCCEEEccCCcCCcch--hhccC-
Confidence 2235667777777777763 22 22 35778999999999999887665 67788
Q ss_pred CCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 377 PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 377 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.. . +..+++|+.|++++|+
T Consensus 156 ~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~--l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--A--LAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--G--GTTCTTCSEEEEEEEE
T ss_pred CCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--h--hccCCCCCEEECcCCc
Confidence 999999999999876544 889999999999999887632 2 6789999999999954
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=148.78 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=140.0
Q ss_pred CeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCc-ccCh-hhhcCcCCcE-EecCCccccccc-hhhhccccCcee
Q 010381 211 KYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLK-CLPS-QLCTLLNLQT-LQMPSSYIDQSP-EDIWMMQKLMHL 285 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~-~lp~-~~~~l~~L~~-L~L~~~~~~~lp-~~i~~l~~L~~L 285 (512)
++++.|+|++|.++.+|. .|.++++|++|+|++|.+. .+|. .+.++++|++ +.+.+|++..++ ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467778888888887764 4777888888888888764 4554 3567777665 444455777774 446778888888
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCC--CCccCch-hcCCC-CCCCeEEEeccchhhhhhHHHhccCCCCCcEEEecc
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALH--PISCTPD-ILGRL-PNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVN 361 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~--~~~~~~~-~l~~l-~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 361 (512)
++++|.+....+..+....++..+++.+ .+...+. .+..+ ..++.|+++++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N------------------------- 164 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN------------------------- 164 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-------------------------
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-------------------------
Confidence 8888877654444455555666666542 1122221 12222 23444555444
Q ss_pred CCCCCCcccCcCCCCCCccEEEEec-ccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCc
Q 010381 362 ESKPSRMVLSEYQFPPSLTHLSLSN-TELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWL 440 (512)
Q Consensus 362 ~~~p~L~~l~~~~lp~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 440 (512)
.+..+.. ..... .+|++|.+.+ |.++..+...|+.+++|++|++++|.+.... ...+.+|+.|.+.++..+
T Consensus 165 -~i~~i~~-~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-----~~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 165 -GIQEIHN-SAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-----SYGLENLKKLRARSTYNL 236 (350)
T ss_dssp -CCCEECT-TSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-----SSSCTTCCEEECTTCTTC
T ss_pred -cccCCCh-hhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-----hhhhccchHhhhccCCCc
Confidence 3321110 33344 6788888875 4555455556888999999999988876432 345788888888888888
Q ss_pred ceeeeCCCCccccceeeecCC
Q 010381 441 DEWTMGAGAMPKLESLIVDPC 461 (512)
Q Consensus 441 ~~l~~~~~~l~~L~~L~l~~c 461 (512)
+.+|. +..+++|+.+++.++
T Consensus 237 ~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 237 KKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCC-TTTCCSCCEEECSCH
T ss_pred CcCCC-chhCcChhhCcCCCC
Confidence 88884 778899999988753
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=137.20 Aligned_cols=150 Identities=16% Similarity=0.204 Sum_probs=72.8
Q ss_pred CCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccc-cchhhhccccCceeecC
Q 010381 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ-SPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~L~l~ 288 (512)
+++|+.|++++|.++.+| .+..+++|++|++++|.++.++ .++.+++|++|++++|.+.. .|..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 345555555555555555 4555555666666555554443 45555566666665555543 34445555666666665
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
+|.+... .+..++.+++|+.|++++| .....++ .+..+++|+.|++++|.+..+.
T Consensus 121 ~n~i~~~----------------------~~~~l~~l~~L~~L~L~~n--~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 121 HSAHDDS----------------------ILTKINTLPKVNSIDLSYN--GAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp SSBCBGG----------------------GHHHHTTCSSCCEEECCSC--TBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred CCccCcH----------------------hHHHHhhCCCCCEEEccCC--CCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 5555321 2223333333333333333 1111222 3344445555555554443332
Q ss_pred ccCcCCCCCCccEEEEecccC
Q 010381 369 VLSEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~ 389 (512)
.+..+ ++|+.|++++|.+
T Consensus 176 --~l~~l-~~L~~L~l~~N~i 193 (197)
T 4ezg_A 176 --GIEDF-PKLNQLYAFSQTI 193 (197)
T ss_dssp --TGGGC-SSCCEEEECBC--
T ss_pred --HhccC-CCCCEEEeeCccc
Confidence 34455 6666666666654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-16 Score=145.85 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=113.6
Q ss_pred CCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCC
Q 010381 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~ 289 (512)
+..+..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|. +.++++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 455666677777777665 5677888888888888888777 67788888888888888888776 78888888888888
Q ss_pred cccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcc
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMV 369 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~ 369 (512)
|.+.+ +|.. .. ++|+.|++++|. . ..+ ..+..+++|+.|++++|.+..+.
T Consensus 95 N~l~~-l~~~-~~-----------------------~~L~~L~L~~N~--l-~~~-~~l~~l~~L~~L~Ls~N~i~~~~- 144 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-----------------------ACLSRLFLDNNE--L-RDT-DSLIHLKNLEILSIRNNKLKSIV- 144 (263)
T ss_dssp SCCSC-CTTC-CC-----------------------SSCCEEECCSSC--C-SBS-GGGTTCTTCCEEECTTSCCCBCG-
T ss_pred CccCC-cCcc-cc-----------------------CcccEEEccCCc--c-CCC-hhhcCcccccEEECCCCcCCCCh-
Confidence 87753 2321 11 444455555442 1 111 13555566666666666554443
Q ss_pred cCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc
Q 010381 370 LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 370 l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
.+..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 145 -~l~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 -MLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -GGGGC-TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHccC-CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 45566 7777777777776554 5667777777888877776554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=136.40 Aligned_cols=175 Identities=19% Similarity=0.260 Sum_probs=85.6
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccchh-hhccccCceeecCCccc
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITL 292 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~ 292 (512)
.++.+++.++.+|..+ .++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3444455555555433 23555555555555544432 44555555555555555555443 34555555555555555
Q ss_pred CCCCCCCCCCCCCCCeeecCC-CCccCch-hcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 293 PAPPTNYSSSLKNLIFVSALH-PISCTPD-ILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 293 ~~~~p~~~~~l~~L~~l~l~~-~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
.+..+..++++++|+.|++++ .+...+. .+..+++|+.|+++++. .....+..+..+++|+.|++++|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~------- 159 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDNP------- 159 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSCC-------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCCC-------
Confidence 433333344455555555543 1122222 24455555666655551 221112224445555555555543
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCc
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLP 401 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~ 401 (512)
+...+ ++|+.|+++.|.+++..|..++.++
T Consensus 160 ~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 160 WDCTC-PGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp BCCCT-TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred eecCC-CCHHHHHHHHHhCCceeeccCcccc
Confidence 23344 5566666666666555555555444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=155.83 Aligned_cols=188 Identities=18% Similarity=0.189 Sum_probs=127.3
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCC
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 294 (512)
.+.+..+.+..++. +..+.+|++|++++|.+..+| .++.+++|+.|+|++|.+..++. +..+++|++|++++|.+..
T Consensus 25 ~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred HHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC
Confidence 33444444443222 345667777777777777665 46677777777777777766665 6677777777777776643
Q ss_pred CCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCC
Q 010381 295 PPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQ 374 (512)
Q Consensus 295 ~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~ 374 (512)
+..+..+++|+.|+++++.-..+..+..+++|+.|++++|. .. .+ ..+..+++|+.|+|++|.+..+. .+..
T Consensus 102 --l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~--~l~~ 173 (605)
T 1m9s_A 102 --LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--IT-DI-TVLSRLTKLDTLSLEDNQISDIV--PLAG 173 (605)
T ss_dssp --CTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC--CC-CC-GGGGSCTTCSEEECCSSCCCCCG--GGTT
T ss_pred --ChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc--cC-Cc-hhhcccCCCCEEECcCCcCCCch--hhcc
Confidence 23566667777777664212223457788888888888883 22 22 56778888999999888776554 3567
Q ss_pred CCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc
Q 010381 375 FPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 375 lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
+ ++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+.+.
T Consensus 174 l-~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 L-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp C-TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred C-CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 7 8888888888887652 4678888888888888887654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-15 Score=172.96 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=109.5
Q ss_pred CCCCCCchhHHHHhhhccc-CCCHHHHHHHHHHcCCCCCc-------cccCCCCHHHHHhhhcccCCCCcchhhHhhhhc
Q 010381 1 MENGEKIRLDSVLIGGPLI-RLKHEAWQFFILHYGSMPLE-------NYLQGETIPTILSRICSVLELPFHLKICCIYLC 72 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~-~~~~~~W~~~l~~l~~~~~~-------~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~~a 72 (512)
|++|+|+||||+++|+.|+ +. .+|+.+++.+...... ... +.+..+|+ +||+.|+++.|.||+|||
T Consensus 314 ~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~l~--~s~~~L~~~~~~~~~~l~ 387 (1249)
T 3sfz_A 314 IKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDY--EALDEAMS--ISVEMLREDIKDYYTDLS 387 (1249)
T ss_dssp HHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTH--HHHHHHHH--HHHHTSCTTTHHHHHHGG
T ss_pred HHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccch--HHHHHHHH--HHHHhCCHHHHHHHHHhC
Confidence 4689999999999999999 55 5798888877544320 011 35899999 999999999999999999
Q ss_pred ccCCCceeCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHHhhhhc
Q 010381 73 VFPPSIEISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKT 147 (512)
Q Consensus 73 ~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~~~~~~ 147 (512)
+||+++.|+++.++.+|.++ ++.++.++++|++++|++... .+....|+|||+++++++..+.++
T Consensus 388 ~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 388 ILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp GSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999999999999655 456899999999999999765 344467999999999999886554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-15 Score=152.81 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=121.2
Q ss_pred ccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC
Q 010381 235 LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP 314 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~ 314 (512)
+|++|++++|.++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|.+.+ +|. +++ +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls-- 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD-- 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC--
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC--
Confidence 89999999999998887664 78999999999998888 567899999999998865 565 443 55555555
Q ss_pred CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCC
Q 010381 315 ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPM 394 (512)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~ 394 (512)
+|. ...+|. .+++|+.|++++|.+..+. . .+ ++|+.|++++|.+++ .|
T Consensus 129 --------------------~N~---l~~lp~---~l~~L~~L~Ls~N~l~~lp--~--~l-~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 129 --------------------NNQ---LTMLPE---LPALLEYINADNNQLTMLP--E--LP-TSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp --------------------SSC---CSCCCC---CCTTCCEEECCSSCCSCCC--C--CC-TTCCEEECCSSCCSC-CC
T ss_pred --------------------CCc---CCCCCC---cCccccEEeCCCCccCcCC--C--cC-CCcCEEECCCCCCCC-cc
Confidence 331 111222 3445555555555443321 1 23 677777777777665 34
Q ss_pred CCCCCCcccceeEEEcccccCceeeeeCCCCCccc-------cEEEecCCCCcceeeeCCCCccccceeeecCCcccCCC
Q 010381 395 PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL-------KVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKL 467 (512)
Q Consensus 395 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 467 (512)
. +. ++|+.|++++|.+.... .+ .. +| +.|+|++ +.++.+|..+..+++|+.|++++|+....+
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~~lp-~~--~~---~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLESLP-AV--PV---RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp C-CC--TTCCEEECCSSCCSSCC-CC--C-----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred h-hh--CCCCEEECcCCCCCchh-hH--HH---hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 3 44 67777777777765322 21 11 45 7788877 456677776677788888888887765555
Q ss_pred CcccC
Q 010381 468 PEELW 472 (512)
Q Consensus 468 p~~~~ 472 (512)
|..+.
T Consensus 247 p~~l~ 251 (571)
T 3cvr_A 247 RESLS 251 (571)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-15 Score=161.38 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=80.3
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCe
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKY 238 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 238 (512)
..++++++..+.....+... ...+|+.+.+....... ....+ +..+..++.|++|+|++|.+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~-n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIE-NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccc-cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 44667777545444433332 33444444333322110 00012 44447778888888888887777777778888888
Q ss_pred eeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 239 LKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 239 L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
|+|++|.++.+|..++++++|++|+|++|.+..+|..++++++|++|+|++|.+. .+|..++++++|+.|++++
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 8888888888887788888888888888877788877888888888888888764 5666666666666666553
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=131.79 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=51.9
Q ss_pred cCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecC
Q 010381 236 LKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 236 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
-+.++.+++.++.+|..+ .++|++|++++|.+..+|.. +..+++|++|++++|.+.+..+..+.++++|+.|+++
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 356777888888888655 46899999999988887764 6788999999999888753323333444444444443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=137.05 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=108.5
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|. ++.+++|++|++++|.++.+|... . ++|++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc-c-CcccEEEc
Confidence 67788999999999988887 68889999999999999998876 889999999999999888887533 3 89999999
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
++|.+.+ ++ .+ +.+++|+.|++++|. ...++ .+..+++|+.|++++|.+..+
T Consensus 114 ~~N~l~~-~~-~l----------------------~~l~~L~~L~Ls~N~---i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 114 DNNELRD-TD-SL----------------------IHLKNLEILSIRNNK---LKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSB-SG-GG----------------------TTCTTCCEEECTTSC---CCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred cCCccCC-Ch-hh----------------------cCcccccEEECCCCc---CCCCh-HHccCCCCCEEECCCCcCcch
Confidence 9988753 21 23 444455555555442 11122 355566666666666665544
Q ss_pred cccCcCCCCCCccEEEEecccCCCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKED 392 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~ 392 (512)
. .+..+ ++|+.|++++|.+...
T Consensus 166 ~--~l~~l-~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 G--GLTRL-KKVNWIDLTGQKCVNE 187 (263)
T ss_dssp T--TSTTC-CCCCEEEEEEEEEECC
T ss_pred H--HhccC-CCCCEEeCCCCcccCC
Confidence 3 56677 7888888888877654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-16 Score=165.59 Aligned_cols=120 Identities=20% Similarity=0.158 Sum_probs=97.9
Q ss_pred CCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEE
Q 010381 353 KLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVL 432 (512)
Q Consensus 353 ~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 432 (512)
.|+.|++++|.+..+. .+..+ ++|+.|+|++|.++ ..|..++.+++|+.|++++|.+.+. + . ++.+++|+.|
T Consensus 442 ~L~~L~Ls~n~l~~lp--~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p--~-l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC--HLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D--G-VANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSSCC--CGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G--G-GTTCSSCCEE
T ss_pred CceEEEecCCCCCCCc--Ccccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c--c-cCCCCCCcEE
Confidence 5899999998776554 46788 99999999999987 6777899999999999999998763 3 3 7889999999
Q ss_pred EecCCCCccee--eeCCCCccccceeeecCCcccCCCCccc----CCCCCCcEEEc
Q 010381 433 HLKSMYWLDEW--TMGAGAMPKLESLIVDPCAYLRKLPEEL----WCIQSLRKLDL 482 (512)
Q Consensus 433 ~L~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~~~----~~l~~L~~L~l 482 (512)
+|++| .++.+ |..++.+++|+.|++++|+. +.+|... ..+|+|+.|++
T Consensus 514 ~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 514 LLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred ECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 99995 66666 78889999999999999984 4444432 34899998864
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-15 Score=157.37 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=96.9
Q ss_pred CCCchhHHHHhhhccc-CC-CHHHHHHHHHHcCCCCCccccCCCCHHHHHhhhcccCCCCcch-hhHhhhhcccCCCcee
Q 010381 4 GEKIRLDSVLIGGPLI-RL-KHEAWQFFILHYGSMPLENYLQGETIPTILSRICSVLELPFHL-KICCIYLCVFPPSIEI 80 (512)
Q Consensus 4 c~GlPLai~~~g~~L~-~~-~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~~lsY~~L~~~~-k~cfl~~a~fp~~~~i 80 (512)
|+|+||||+++|+.|+ +. +.++|+.+ .. ..+..+|+ +||+.||++. |+||+|||+||+++.|
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~------~~I~aaLe--lSYd~Lp~eelK~cFL~LAIFPed~~I 387 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV-------NC------DKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHI 387 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SC------HHHHHHHH--HHHHHSCTTHHHHHHHHTTSSCTTSCE
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------Ch------hHHHHHHH--HHHHhCCHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999 64 58899864 11 67999999 9999999999 9999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHH
Q 010381 81 STRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSL 140 (512)
Q Consensus 81 ~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~ 140 (512)
+.+.++.+|+++| ++.+..++++|++++||+... ....++|||++++++
T Consensus 388 ~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 388 PTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp EHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred CHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 9999999999887 235889999999999999842 125799999998865
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-16 Score=166.56 Aligned_cols=201 Identities=17% Similarity=0.142 Sum_probs=106.3
Q ss_pred cCccccCeeeecCCCCcccChhhhcCcCCcEEecCCcc--------------ccccchhhhccccCceee-cCCcccCCC
Q 010381 231 ENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSY--------------IDQSPEDIWMMQKLMHLN-FGSITLPAP 295 (512)
Q Consensus 231 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~--------------~~~lp~~i~~l~~L~~L~-l~~~~~~~~ 295 (512)
..+++|+.|++++|.++.+|..++++++|+.|+++++. .+..|..++.+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 45667777777777777777777777777777775552 233455667777777776 4443321
Q ss_pred CCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCC
Q 010381 296 PTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQF 375 (512)
Q Consensus 296 ~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~l 375 (512)
.|..+.+.+ .....+. ...|+.|++++| ....+|. ++.+++|+.|++++|.+..+-. .++.+
T Consensus 424 ---------~L~~l~l~~---n~i~~l~-~~~L~~L~Ls~n---~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l 485 (567)
T 1dce_A 424 ---------DLRSKFLLE---NSVLKME-YADVRVLHLAHK---DLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAAL 485 (567)
T ss_dssp ---------HHHHHHHHH---HHHHHHH-HTTCSEEECTTS---CCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGC
T ss_pred ---------hhhhhhhhc---ccccccC-ccCceEEEecCC---CCCCCcC-ccccccCcEeecCcccccccch-hhhcC
Confidence 111111110 0000000 012455555554 2222333 5555556666665554322111 45556
Q ss_pred CCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce-eeeeCCCCCccccEEEecCCCCcceeeeCCC----Cc
Q 010381 376 PPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK-LACVGSGGFPELKVLHLKSMYWLDEWTMGAG----AM 450 (512)
Q Consensus 376 p~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~----~l 450 (512)
++|+.|+|++|.+++ +| .++.+++|+.|++++|.+.+.. +.. ++.+++|+.|+|++| .++.+|.... .+
T Consensus 486 -~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~--l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 486 -RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGN-SLCQEEGIQERLAEML 559 (567)
T ss_dssp -TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG--GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHC
T ss_pred -CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH--HhcCCCCCEEEecCC-cCCCCccHHHHHHHHC
Confidence 666666666666654 33 5666666666666666665543 222 455666666666663 3444443222 25
Q ss_pred cccceee
Q 010381 451 PKLESLI 457 (512)
Q Consensus 451 ~~L~~L~ 457 (512)
|+|+.|+
T Consensus 560 p~L~~L~ 566 (567)
T 1dce_A 560 PSVSSIL 566 (567)
T ss_dssp TTCSEEE
T ss_pred cccCccC
Confidence 6666664
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=126.97 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=68.3
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSIT 291 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 291 (512)
+.++.+++.++.+|..+. ++|++|++++|.++.+ |..+..+++|++|+|++|.+..+|.. +..+++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 446666666666665543 6677777777777644 45566677777777777766666643 4667777777777776
Q ss_pred cCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEecc
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~ 336 (512)
+.+..+..+..+++|+.|++++ .+..+|..+..+++|+.|+++++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC
Confidence 6533333344444444444443 22233333333444444444433
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-14 Score=140.60 Aligned_cols=121 Identities=19% Similarity=0.209 Sum_probs=76.7
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccChh-hh-cCcCCcEEecCCccccccch-hhhccccCceeecCCc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ-LC-TLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSI 290 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~ 290 (512)
++++++++.++.+|..+. ..+++|+|++|.++.++.. +. ++++|++|+|++|.+..++. .+.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 467777777777776554 3577788888877766554 33 67788888888887777664 4777788888888877
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC-CCc-cCchhcCCCCCCCeEEEecc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH-PIS-CTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~-~~~-~~~~~l~~l~~L~~L~l~~~ 336 (512)
.+....+..+.++++|+.|++++ .+. ..+..+..+++|+.|+++++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 77544444455555555555553 111 12334455555555555555
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=126.17 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=51.8
Q ss_pred CeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeec
Q 010381 211 KYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNF 287 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l 287 (512)
+.|+.|++++|.++.++. .+..+++|++|++++|.++.+ |..+..+++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 345555555555553332 455555555555555555533 44455555555555555555555543 344555555555
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
++|.+.+..|..+..+++|+.|+++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECC
Confidence 5555544434444444444444444
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-14 Score=126.71 Aligned_cols=100 Identities=10% Similarity=0.097 Sum_probs=43.1
Q ss_pred eEEEEecCCcCCccC--ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchh-hhccccCceeecC
Q 010381 213 LRVLDLGSAVLDQFP--PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFG 288 (512)
Q Consensus 213 L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~ 288 (512)
+++|++++|.++.++ ..+..+++|++|++++|.++.++. .++.+++|++|+|++|.+..++.. +..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 344444444444331 224444444444444444443332 344444444444444444444332 3444444444444
Q ss_pred CcccCCCCCCCCCCCCCCCeeecC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
+|.+.+..|..+..+++|+.|+++
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCcCCeECHhHcCCCccCCEEECC
Confidence 444443333333333333333333
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=123.77 Aligned_cols=128 Identities=23% Similarity=0.278 Sum_probs=95.5
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCcccChh-hhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCLPSQ-LCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~ 257 (512)
..++|+.|.+.+|.+. .+ +..|..+++|++|++++|.++.+|. .+..+++|++|++++|.++.+|.. +..++
T Consensus 38 ~~~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 38 IPTNAQILYLHDNQIT-----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp CCTTCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCEEEcCCCccC-----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 3577888888888776 33 4444788888888888888886664 467888888888888888876654 57788
Q ss_pred CCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 258 NLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
+|++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|+.+++.+
T Consensus 113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 88888888888888888888888888888888887644444456666666666654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=124.51 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=101.8
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccCh--hhhcCcCCcEEecCCccccccch-hhhccccCceeecCCc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS--QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSI 290 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~ 290 (512)
+.++++++.++.+|..+. ..+++|++++|.++.++. .++.+++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467888888877776553 346788888888876532 36777888888888887777664 5777777777777777
Q ss_pred ccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
.+.+ ..+..+..+++|++|+++++. .... .|.
T Consensus 92 ~l~~----------------------~~~~~~~~l~~L~~L~Ls~N~--l~~~--------------------~~~---- 123 (220)
T 2v70_A 92 RLEN----------------------VQHKMFKGLESLKTLMLRSNR--ITCV--------------------GND---- 123 (220)
T ss_dssp CCCC----------------------CCGGGGTTCSSCCEEECTTSC--CCCB--------------------CTT----
T ss_pred ccCc----------------------cCHhHhcCCcCCCEEECCCCc--CCeE--------------------CHh----
Confidence 7642 222334556666666666651 1110 122
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
.+..+ ++|+.|+|++|.+++..+..+..+++|+.|++++|.+..
T Consensus 124 ~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 124 SFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 55666 778888888888777667778888888888888877653
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-13 Score=121.82 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=108.1
Q ss_pred CCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccChh-hhcCcC
Q 010381 182 DMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLN 258 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~ 258 (512)
.++++.|.+.+|.+. .+ ...|..+++|++|++++|.++.+ |..|..+++|++|++++|.++.+|.. +..+++
T Consensus 31 ~~~l~~L~l~~n~i~-----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 31 PETITEIRLEQNTIK-----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp CTTCCEEECCSSCCC-----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcCCCEEECCCCcCC-----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 478999999999886 44 43448999999999999999954 78899999999999999999988876 578999
Q ss_pred CcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 259 LQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 259 L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
|++|+|++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.+++.+
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 999999999998874 5688999999999999999766566677777777777764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=119.12 Aligned_cols=132 Identities=19% Similarity=0.155 Sum_probs=94.3
Q ss_pred cCCCeeEEEEecCCcCC--ccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccc-cchhhhccccCce
Q 010381 208 KKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ-SPEDIWMMQKLMH 284 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~ 284 (512)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 44578999999999887 8888888899999999999988877 678888999999999998877 7777777999999
Q ss_pred eecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH---HhccCCCCCcEEEecc
Q 010381 285 LNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS---KSLCKLQKLEWLKLVN 361 (512)
Q Consensus 285 L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~l~~L~~L~l~~ 361 (512)
|++++|.+.+ +| .+..+..+++|+.|++++|. .....+ ..+..+++|+.|++++
T Consensus 100 L~Ls~N~l~~-~~--------------------~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 100 LNLSGNKLKD-IS--------------------TLEPLKKLECLKSLDLFNCE--VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EECBSSSCCS-SG--------------------GGGGGSSCSCCCEEECCSSG--GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred EeccCCccCc-ch--------------------hHHHHhcCCCCCEEEeeCCc--CcchHHHHHHHHHhCccCcEecCCC
Confidence 9999888742 11 11345556666666666662 221111 2455566666666655
Q ss_pred CC
Q 010381 362 ES 363 (512)
Q Consensus 362 ~~ 363 (512)
|.
T Consensus 157 n~ 158 (168)
T 2ell_A 157 RE 158 (168)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=117.13 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=96.1
Q ss_pred cCCCeeEEEEecCCcCC--ccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccc-cchhhhccccCce
Q 010381 208 KKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ-SPEDIWMMQKLMH 284 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~ 284 (512)
...++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 44578999999999988 8888888999999999999988877 678889999999999998877 7777778999999
Q ss_pred eecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH---HhccCCCCCcEEEec
Q 010381 285 LNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS---KSLCKLQKLEWLKLV 360 (512)
Q Consensus 285 L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~l~~L~~L~l~ 360 (512)
|++++|.+.+ ...+..++.+++|+.|++++|. .....+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~---------------------~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKD---------------------LSTIEPLKKLENLKSLDLFNCE--VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCS---------------------HHHHGGGGGCTTCCEEECTTCG--GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCC---------------------hHHHHHHhhCCCCCEEeCcCCc--ccchHHHHHHHHHHCCCcccccCC
Confidence 9999988742 1122445666666777776662 222211 356667777777664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-13 Score=129.02 Aligned_cols=285 Identities=12% Similarity=0.060 Sum_probs=180.9
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhc-----
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCT----- 255 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~----- 255 (512)
...+++.|.+.++-.. .++..+...+++|++|||++|.+......-+.++.++++.+..+.|.. ..+.+
T Consensus 23 ~~~~l~~L~l~g~i~~----~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~--~aF~~~~~~~ 96 (329)
T 3sb4_A 23 EANSITHLTLTGKLNA----EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA--YAFSNVVNGV 96 (329)
T ss_dssp HHHHCSEEEEEEEECH----HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT--TTTEEEETTE
T ss_pred hhCceeEEEEeccccH----HHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCH--HHhccccccc
Confidence 4567888888875332 134455233888999999999887211112233345566555553321 23455
Q ss_pred ---CcCCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-----C-ccCchhcCCC
Q 010381 256 ---LLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP-----I-SCTPDILGRL 325 (512)
Q Consensus 256 ---l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~-----~-~~~~~~l~~l 325 (512)
+++|+.++|.. .++.+++. +..|++|+.+++.+|.+....+..+..+.++..+..... . ......+..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 89999999988 77777754 778999999999888876555666777666666655431 0 0111223455
Q ss_pred CCCC-eEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC-CcccCc-CCCCCCccEEEEecccCCCCCCCCCCCCcc
Q 010381 326 PNIQ-TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS-RMVLSE-YQFPPSLTHLSLSNTELKEDPMPTLEKLPY 402 (512)
Q Consensus 326 ~~L~-~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~-L~~l~~-~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~ 402 (512)
.+|+ .+.+.... .....+...-....++..+.+.++.... .. .+ ..+ ++|+.|+|++|.++......|.++++
T Consensus 176 ~~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~--~l~~~~-~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKLDNADFK--LIRDYM-PNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECCCHHHHH--HHHHHC-TTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cccceeEEecCCC-cHHHHHhhcccCccccceEEEeeeecHHHHH--HHHHhc-CCCeEEECCCCCcceecHhhhhCCCC
Confidence 5666 55554432 1222222222245566777776532110 00 01 125 88999999988887777778999999
Q ss_pred cceeEEEcccccCceeeeeCCCCCcccc-EEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCc-ccCCCCCCcE
Q 010381 403 VQVLKLKQNSYLGRKLACVGSGGFPELK-VLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRK 479 (512)
Q Consensus 403 L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~ 479 (512)
|+.+.+.+| +. .+.... +.++++|+ .+.+.+ .++.++ ..+.++++|+.+++.++. ++.++. .+.++++|+.
T Consensus 252 L~~l~l~~n-i~-~I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 252 LLKIKLPHN-LK-TIGQRV-FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKL 325 (329)
T ss_dssp CCEEECCTT-CC-EECTTT-TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCE
T ss_pred CCEEECCcc-cc-eehHHH-hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhh
Confidence 999999866 32 233333 78889999 999987 577775 567889999999998776 554444 7888999998
Q ss_pred EEc
Q 010381 480 LDL 482 (512)
Q Consensus 480 L~l 482 (512)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 864
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=118.20 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=95.2
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcc-cChhhhcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKC-LPSQLCTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L 259 (512)
..++++.|.+.++.+.. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34678888888876641 13433447888899999999888866 678888899999999998886 77777778999
Q ss_pred cEEecCCccccccc--hhhhccccCceeecCCcccCCCCC---CCCCCCCCCCeeec
Q 010381 260 QTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPT---NYSSSLKNLIFVSA 311 (512)
Q Consensus 260 ~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~l~l 311 (512)
++|++++|.++.+| ..+..+++|++|++++|.+.+..+ ..++.+++|+.+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 99999999887765 678888999999999888764332 24555666665554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=118.18 Aligned_cols=128 Identities=18% Similarity=0.170 Sum_probs=80.4
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcc-cChhhhcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKC-LPSQLCTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L 259 (512)
..++++.|.+.++.+.. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++++++|
T Consensus 22 ~~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34566677776665531 13333336667777777777777655 566777777777777777775 66666667777
Q ss_pred cEEecCCccccccc--hhhhccccCceeecCCcccCCCCC---CCCCCCCCCCeeecC
Q 010381 260 QTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPT---NYSSSLKNLIFVSAL 312 (512)
Q Consensus 260 ~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~l~l~ 312 (512)
++|++++|.++.+| ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 77777777776665 556777777777777777653222 134444444444443
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-13 Score=143.96 Aligned_cols=128 Identities=20% Similarity=0.302 Sum_probs=104.3
Q ss_pred CCCCCchhHHHHhhhccc-CCCHHHHHHHHHHcCCCCCcc-----ccCCCCHHHHHhhhcccCCCCcchhhHhhhhcccC
Q 010381 2 ENGEKIRLDSVLIGGPLI-RLKHEAWQFFILHYGSMPLEN-----YLQGETIPTILSRICSVLELPFHLKICCIYLCVFP 75 (512)
Q Consensus 2 ~~c~GlPLai~~~g~~L~-~~~~~~W~~~l~~l~~~~~~~-----~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~~a~fp 75 (512)
++|+|+||||+.+|+.|+ +. .+|+.+++.+....... ......+..++. .||+.||++.|.||+++|+||
T Consensus 315 ~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~--~s~~~L~~~~~~~l~~la~f~ 390 (591)
T 1z6t_A 315 KECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMS--ISVEMLREDIKDYYTDLSILQ 390 (591)
T ss_dssp HHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHH--HHHHTSCTTTHHHHHHGGGCC
T ss_pred HHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHH--HHHHhCCHHHHHHHHHccccC
Confidence 579999999999999999 54 47998888776443200 000036889999 999999999999999999999
Q ss_pred CCceeCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHHh
Q 010381 76 PSIEISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLV 143 (512)
Q Consensus 76 ~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~~ 143 (512)
+|+.|+.+.+..+|.++ ...+..+++.|+++++|+.... +....++||++++++++..
T Consensus 391 ~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 391 KDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHH
T ss_pred CCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhh
Confidence 99999999999999543 3457889999999999986552 3346799999999999876
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-13 Score=117.22 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=65.8
Q ss_pred cCCCeeEEEEecCCcCCccCccccCcc-ccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhh-hccccCcee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLF-LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDI-WMMQKLMHL 285 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L 285 (512)
.++.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|..+ ..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 445556666666665555443 33333 566666666655554 34555566666666666555555433 556666666
Q ss_pred ecCCcccCCCCCC--CCCCCCCCCeeecCC-CCccCch----hcCCCCCCCeEEEecc
Q 010381 286 NFGSITLPAPPTN--YSSSLKNLIFVSALH-PISCTPD----ILGRLPNIQTLRISGD 336 (512)
Q Consensus 286 ~l~~~~~~~~~p~--~~~~l~~L~~l~l~~-~~~~~~~----~l~~l~~L~~L~l~~~ 336 (512)
++++|.+. .+|. .++.+++|+.+++++ .+...+. .+..+++|+.|+++.+
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 66665552 2332 333344444444432 1122333 2566777777777766
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.2e-13 Score=116.06 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=103.7
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhh-hcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQL-CTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L 259 (512)
.+++++.|.+.+|.+. .++.+....++|++|++++|.++.+ +.++.+++|++|++++|.++.+|..+ +.+++|
T Consensus 17 ~~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCc-----hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 6788999999988776 3344533445899999999998877 67888999999999999999887665 889999
Q ss_pred cEEecCCccccccch--hhhccccCceeecCCcccCCCCCCC----CCCCCCCCeeecCC
Q 010381 260 QTLQMPSSYIDQSPE--DIWMMQKLMHLNFGSITLPAPPTNY----SSSLKNLIFVSALH 313 (512)
Q Consensus 260 ~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~l~l~~ 313 (512)
++|++++|.++.+|. .+..+++|++|++++|.+. .+|.. +..+++|+.+++..
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 999999998888886 7888999999999999886 55664 78889999998874
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-13 Score=129.81 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=77.3
Q ss_pred CCCeeEEEEecCCcchhhhcch-hHHhc-CCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCc
Q 010381 182 DMYLQSFLNHSSESDRLARIDC-ENFCK-KFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLL 257 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~-~~~~~-~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~ 257 (512)
.+.++.|++++|.+. .+ ...+. .+++|++|++++|.++.++ ..|..+++|++|+|++|.++.+|. .+..++
T Consensus 38 ~~~l~~L~Ls~N~l~-----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 38 PSYTALLDLSHNNLS-----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112 (361)
T ss_dssp CTTCSEEECCSSCCC-----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCCEEECCCCCCC-----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence 345667777777665 23 33334 6677777777777776444 456677777777777777775544 356677
Q ss_pred CCcEEecCCcccccc-chhhhccccCceeecCCcccCCCCCCCC----CCCCCCCeeecCC
Q 010381 258 NLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSITLPAPPTNYS----SSLKNLIFVSALH 313 (512)
Q Consensus 258 ~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~----~~l~~L~~l~l~~ 313 (512)
+|++|+|++|.+..+ |..+..+++|++|++++|.+.. +|..+ .++++|+.|++++
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCS
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCC
Confidence 777777777766655 3456667777777777776653 33322 4456666666654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-12 Score=112.00 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=81.0
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCccc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 292 (512)
++++++++.++.+|..+. .+|++|++++|.++.+|..+.++++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456777777777776543 46777777777777777777777777777777777766653 466777777777777777
Q ss_pred CCCCCCCCCCCCCCCeeecCC-CCccCch-hcCCCCCCCeEEEecc
Q 010381 293 PAPPTNYSSSLKNLIFVSALH-PISCTPD-ILGRLPNIQTLRISGD 336 (512)
Q Consensus 293 ~~~~p~~~~~l~~L~~l~l~~-~~~~~~~-~l~~l~~L~~L~l~~~ 336 (512)
....|..+..+++|+.|++++ .+...+. .+..+++|+.|+++++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 655555666677777777664 2233333 3556666666666655
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-12 Score=113.48 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=64.9
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccChh--hhcCcCCcEEecCCcccccc-chhhhccccCceeecCCc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ--LCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~ 290 (512)
++++++++.++.+|..+.. +|++|++++|.++.++.. ++.+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4556666666666654433 566666666666655442 55666666666666655554 445566666666666666
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEecc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~ 336 (512)
.+.+..|..+.++++|+.|++++ .+ ...+..+..+++|+.|+++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 66544444455555555555543 11 112333444444555544444
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.6e-14 Score=150.35 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=94.7
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEE-----EecCCcCCccCccccCccccCeeeecCCCCcccChhhh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVL-----DLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLC 254 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L-----~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~ 254 (512)
..+.++.|.+.++.... . ..+ .....|+.+ ++..+.+...|+.+..+.+|+.|+|++|.+..+|..+.
T Consensus 171 s~~~~~~l~L~~n~~~~-----~~~~~-l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 171 STPLTPKIELFANGKDE-----ANQAL-LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred cCCccceEEeeCCCCCc-----chhhH-hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence 34667777777766542 1 111 122222222 22333334456667778888888888888888888788
Q ss_pred cCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEe
Q 010381 255 TLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRIS 334 (512)
Q Consensus 255 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~ 334 (512)
++++|++|+|++|.+..+|..++++++|++|+|++|.+. .+|..++.+++|+.|+++
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-----------------------~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-----------------------SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-----------------------SCCSSGGGGTTCSEEECC
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-----------------------ccChhhcCCCCCCEEECC
Confidence 888888888888877788887888888888888888774 334456777888899998
Q ss_pred ccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcc
Q 010381 335 GDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411 (512)
Q Consensus 335 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 411 (512)
+| ....+|..++.+++|+.|+|++|.+...-.-.+..+......+++++|.+.+..|.. |+.|+++.|
T Consensus 302 ~N---~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 302 DN---MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp SS---CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred CC---CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 88 334667677777788888887776532000011111011123556667666555433 444455544
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-12 Score=111.94 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=78.9
Q ss_pred eeEEEEecCCcCCccCc--cccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeec
Q 010381 212 YLRVLDLGSAVLDQFPP--GLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNF 287 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l 287 (512)
.|++|++++|.++.++. .++.+++|++|++++|.++.+ |..++.+++|++|+|++|.+..++.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 67788888888776654 377788888888888888754 66777888888888888877776544 677888888888
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
++|.+.+..|..+..+++|+.+++++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 88888777777788888888888875
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-13 Score=120.42 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=87.3
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .+..+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 67777777777777777766 677777777777777777777776777777777777777777766 4777777777777
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH----------HhccCCCCCcEE
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS----------KSLCKLQKLEWL 357 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~----------~~l~~l~~L~~L 357 (512)
++|.+.. ......+..+++|+.|++++| ......| ..+..+++|+.|
T Consensus 123 ~~N~i~~---------------------~~~~~~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 123 SNNKITN---------------------WGEIDKLAALDKLEDLLLAGN--PLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp SEEECCC---------------------HHHHHHHTTTTTCSEEEECSC--HHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCCcCCc---------------------hhHHHHHhcCCCCCEEEecCC--ccccccccccchHHHHHHHHHhCCCcEEE
Confidence 7776531 111235777888888888888 3333332 236667777776
Q ss_pred E
Q 010381 358 K 358 (512)
Q Consensus 358 ~ 358 (512)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=117.26 Aligned_cols=281 Identities=11% Similarity=-0.043 Sum_probs=179.6
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccC------
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLEN------ 232 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~------ 232 (512)
..+++|.+...-........ .+++|++|+++++.+... .. .- ..++.++.+.+..+.+. +..|.+
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~---~~-~~-~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMY---SG-KA-GTYPNGKFYIYMANFVP--AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCE---EE-SS-SSSGGGCCEEECTTEEC--TTTTEEEETTEE
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEe---cC-cc-ccccccccccccccccC--HHHhcccccccc
Confidence 45777888733221111111 378899999999877510 00 00 12222445555554332 133555
Q ss_pred --ccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccchh-hhccccCceeecCCccc----CCCCCCCCCCCC
Q 010381 233 --LFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITL----PAPPTNYSSSLK 304 (512)
Q Consensus 233 --l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~----~~~~p~~~~~l~ 304 (512)
+.+|+.|.+.+ .++.++.. +.+|++|+.+++..+.+..++.. +..+.++..+....... ...-...+.++.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 89999999988 88876654 77899999999999887777644 56677777776554211 111223345556
Q ss_pred CCC-eeecCCCCccCchhc----CCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCc
Q 010381 305 NLI-FVSALHPISCTPDIL----GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSL 379 (512)
Q Consensus 305 ~L~-~l~l~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L 379 (512)
.|+ .+.+... ..++..+ ....+++.+.+.+. ............+++|+.++++.|.+..+..-.+..+ ++|
T Consensus 177 ~L~~~i~~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~-~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAM-GKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK-KYL 252 (329)
T ss_dssp CCEEEEEECTT-CCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC-TTC
T ss_pred ccceeEEecCC-CcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC-CCC
Confidence 664 4444432 2222222 24667788888876 2223333333358999999999876643332267789 999
Q ss_pred cEEEEecccCCCCCCCCCCCCcccc-eeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeee-CCCCccccceee
Q 010381 380 THLSLSNTELKEDPMPTLEKLPYVQ-VLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTM-GAGAMPKLESLI 457 (512)
Q Consensus 380 ~~L~L~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~ 457 (512)
++|++.++ +.......|.++++|+ .+.+.+ .+.. +.... +.++++|+.+++.+ +.++.++. .+.++++|+.++
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~a-F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGA-FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTT-TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-Echhh-hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 99999987 6666677899999999 999985 4432 22222 78899999999987 57787764 678899999886
Q ss_pred e
Q 010381 458 V 458 (512)
Q Consensus 458 l 458 (512)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=107.38 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=80.5
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccch-hhhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~ 288 (512)
++|++|++++|.++.+|..+..+++|++|++++|.++.++. .+..+++|++|+|++|.+..++. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 56888888888888888888888888888888888886653 57788888888888888877764 47788888888888
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
+|.+....+..+..+++|+.+++.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCeeChhhhhcCccccEEEeCC
Confidence 8888654444577888888888875
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-13 Score=123.12 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=71.1
Q ss_pred ccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCC
Q 010381 225 QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLK 304 (512)
Q Consensus 225 ~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 304 (512)
.+|..++.+++|++|++++|.++.+| .++.+++|++|++++|.+..+|..+..+++|++|++++|.+.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~----------- 106 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA----------- 106 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-----------
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-----------
Confidence 33346777777777777777777776 677777777777777777777766666777777777777653
Q ss_pred CCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH--HhccCCCCCcEEEeccCC
Q 010381 305 NLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS--KSLCKLQKLEWLKLVNES 363 (512)
Q Consensus 305 ~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~L~~L~l~~~~ 363 (512)
..+ .++.+++|+.|++++|. ...++ ..+..+++|+.|++++|.
T Consensus 107 ------------~l~-~~~~l~~L~~L~l~~N~---i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 107 ------------SLS-GIEKLVNLRVLYMSNNK---ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ------------CHH-HHHHHHHSSEEEESEEE---CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ------------cCC-ccccCCCCCEEECCCCc---CCchhHHHHHhcCCCCCEEEecCCc
Confidence 122 45566677777777762 22222 345556566666655543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=101.62 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=56.1
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccchh-hhccccCceeecCCcc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSIT 291 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 291 (512)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 344455554444443322 3455555555555544332 34455555555555555444433 3455555555555555
Q ss_pred cCCCCCCCCCCCCCCCeeecCC-CCccCchh-cCCCCCCCeEEEecc
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH-PISCTPDI-LGRLPNIQTLRISGD 336 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~-l~~l~~L~~L~l~~~ 336 (512)
+.+..+..++++++|+.|++++ .+...+.. +..+++|+.|+++++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 5433333344444444444443 22222222 344555555555555
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=108.93 Aligned_cols=240 Identities=11% Similarity=0.090 Sum_probs=141.5
Q ss_pred cCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccchhhhccccCcee
Q 010381 208 KKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHL 285 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L 285 (512)
.++ +|+.+.+..+ ++.++ .+|.+ .+|+.+.+.. .++.++ ..+.+|.+|+.+++..+.+..+|.....+.+|+.+
T Consensus 133 ~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 133 RNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp TTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred ccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 554 5666666554 54443 23444 3577776664 455443 34666777777777766666666655556667777
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCC
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKP 365 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p 365 (512)
.+..+ +...-...+.++++|+.+.+..++..+.. ..+.+ .+|+.+.+..+ +.
T Consensus 209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~-------------------------~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 209 LLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQ-------------------------EAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECT-------------------------TTTTT-CCCSEEEEETT-CC
T ss_pred EeCCc-hheehhhHhhCCCCCCEEecCCCccCccc-------------------------ccccc-CCccEEEeCCC-cc
Confidence 66533 32222344555555655555432111111 11222 35555555331 11
Q ss_pred CCcccCcCCCCCCccEEEEecccCC-----CCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCc
Q 010381 366 SRMVLSEYQFPPSLTHLSLSNTELK-----EDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWL 440 (512)
Q Consensus 366 ~L~~l~~~~lp~~L~~L~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 440 (512)
.+..-.+..+ ++|+.+.+.++.+. ......|.++++|+.+.+. +.+.. +.... +.++++|+.+.|.. .+
T Consensus 261 ~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I~~~a-F~~c~~L~~l~lp~--~l 334 (401)
T 4fdw_A 261 NIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-LGQGL-LGGNRKVTQLTIPA--NV 334 (401)
T ss_dssp EECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-ECTTT-TTTCCSCCEEEECT--TC
T ss_pred EEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE-Ehhhh-hcCCCCccEEEECc--cc
Confidence 1110156677 78888888776543 2345578889999999998 33332 22222 77889999999965 46
Q ss_pred ceee-eCCCCccccceeeecCCcccCCCCcccCCCC-CCcEEEccCCh
Q 010381 441 DEWT-MGAGAMPKLESLIVDPCAYLRKLPEELWCIQ-SLRKLDLHWPQ 486 (512)
Q Consensus 441 ~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~ 486 (512)
+.+. ..+.++ +|+.+.+.++....-.+..+..++ +++.+++-...
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 7775 456778 999999999864443344566664 78999998765
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-10 Score=99.47 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=93.5
Q ss_pred CcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEE
Q 010381 354 LEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLH 433 (512)
Q Consensus 354 L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 433 (512)
.+.++++++.+.. .-..+|++|+.|++++|.+.+..+..++.+++|++|++++|.+....... +..+++|++|+
T Consensus 9 ~~~l~~~~~~l~~----~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLTS----VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--FDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCSS----CCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEE
T ss_pred CCEEEecCCCCcc----CCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH--ccCCCccCEEE
Confidence 4566776665443 11223488999999999888766667888999999999988886543322 57789999999
Q ss_pred ecCCCCcceeee-CCCCccccceeeecCCcccCCCCcc-cCCCCCCcEEEccCCh
Q 010381 434 LKSMYWLDEWTM-GAGAMPKLESLIVDPCAYLRKLPEE-LWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 434 L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 486 (512)
++++ .++.++. .+..+++|+.|++++|. ++.+|.. +..+++|++|++++|+
T Consensus 83 l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 83 LHEN-KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 9984 5666664 35788999999999987 4566654 5789999999999986
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-10 Score=98.35 Aligned_cols=98 Identities=22% Similarity=0.287 Sum_probs=71.7
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSIT 291 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 291 (512)
+.++++++.++.+|..+. ++|++|++++|.++.+ |..++++++|++|+|++|.+..+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567888888887777664 6788888888888855 55677888888888888888777765 4678888888888887
Q ss_pred cCCCCCCCCCCCCCCCeeecCC
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
+.+..+..+.++++|+.|++++
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCS
T ss_pred cceeCHHHhccccCCCEEEeCC
Confidence 7643333466666666666664
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-10 Score=98.87 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=76.6
Q ss_pred eEEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCc
Q 010381 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSI 290 (512)
Q Consensus 213 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~ 290 (512)
.++++++++.++.+|..+. ++|++|++++|.++.+ |..++.+++|++|+|++|.+..+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678888888888887663 7888899998888866 55688888899999988888888765 478888999999888
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
.+.+..+..+.++++|+.|++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCC
Confidence 88654444566666666666664
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-09 Score=103.18 Aligned_cols=234 Identities=12% Similarity=0.134 Sum_probs=140.9
Q ss_pred CCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccc-hhhhccccCceee
Q 010381 210 FKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLN 286 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~ 286 (512)
+..++.+.+.. .++.++ ..|.++ +|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++ ..+.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34555555543 233333 334443 5777776554 5544433 333 3577777765 444444 3356677777777
Q ss_pred cCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccC--CC
Q 010381 287 FGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE--SK 364 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~--~~ 364 (512)
+..|.+. .++...-...+|+.+.+.. . ....-...+.++++|+.+++..+ .+
T Consensus 187 l~~n~l~-~I~~~aF~~~~L~~l~lp~----------------------~---l~~I~~~aF~~~~~L~~l~l~~~l~~I 240 (401)
T 4fdw_A 187 LSKTKIT-KLPASTFVYAGIEEVLLPV----------------------T---LKEIGSQAFLKTSQLKTIEIPENVSTI 240 (401)
T ss_dssp CTTSCCS-EECTTTTTTCCCSEEECCT----------------------T---CCEECTTTTTTCTTCCCEECCTTCCEE
T ss_pred cCCCcce-EechhhEeecccCEEEeCC----------------------c---hheehhhHhhCCCCCCEEecCCCccCc
Confidence 7666554 2332222234444444432 1 11111234556667777776552 11
Q ss_pred CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC----ceeeeeCCCCCccccEEEecCCCCc
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG----RKLACVGSGGFPELKVLHLKSMYWL 440 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~L~~~~~l 440 (512)
+. ....- .+|+.+.+.. .++......|.++++|+.+.+.++.... ...... +.++++|+.+.|.+ .+
T Consensus 241 ~~----~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a-F~~c~~L~~l~l~~--~i 311 (401)
T 4fdw_A 241 GQ----EAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC-LEGCPKLARFEIPE--SI 311 (401)
T ss_dssp CT----TTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT-TTTCTTCCEECCCT--TC
T ss_pred cc----ccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH-hhCCccCCeEEeCC--ce
Confidence 21 22222 6899999954 4455556789999999999999776531 122222 78899999999985 47
Q ss_pred ceee-eCCCCccccceeeecCCcccCCCC-cccCCCCCCcEEEccCCh
Q 010381 441 DEWT-MGAGAMPKLESLIVDPCAYLRKLP-EELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 441 ~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~ 486 (512)
+.++ ..+.++++|+.+.+..+ ++.++ ..+.++ +|+.+++.++.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred EEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 7776 46778899999999764 55554 467888 99999999874
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.7e-11 Score=115.41 Aligned_cols=164 Identities=16% Similarity=0.079 Sum_probs=82.4
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC--ccCccccCccccCeeeecCCCCccc-Chhh-----
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCL-PSQL----- 253 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~----- 253 (512)
++++.|.+.+|.+.......+ ..+....++|++|+|++|.++ ........+.+|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666543222233 333223356777777777665 1222223345667777777666521 1122
Q ss_pred hcCcCCcEEecCCccccc-----cchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCC
Q 010381 254 CTLLNLQTLQMPSSYIDQ-----SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNI 328 (512)
Q Consensus 254 ~~l~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L 328 (512)
...++|++|+|++|.++. ++..+..+++|++|++++|.+..... ..+...+...++|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~------------------~~L~~~L~~~~~L 213 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL------------------ELLAAQLDRNRQL 213 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH------------------HHHHHHGGGCSCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH------------------HHHHHHHhcCCCc
Confidence 134566777776665533 33344556666666666665431000 1223344455566
Q ss_pred CeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCC
Q 010381 329 QTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 329 ~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
++|++++|. ......++..+...++|+.|++++|.+
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 666666653 112223444444555555555555544
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.2e-10 Score=97.72 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=80.0
Q ss_pred eEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccChh-hhcCcCCcEE
Q 010381 186 QSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTL 262 (512)
Q Consensus 186 r~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 262 (512)
+.+.+.++... .+ ..+ .++|++|++++|.++.+ |..|..+++|++|+|++|.++.+|.. ++++++|++|
T Consensus 15 ~~l~~~~n~l~-----~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA-----SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS-----SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC-----ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 56666666554 33 222 37888999999998865 56788899999999999999988776 4789999999
Q ss_pred ecCCccccccchh-hhccccCceeecCCcccC
Q 010381 263 QMPSSYIDQSPED-IWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 263 ~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~ 293 (512)
+|++|.+..+|.. +..+++|++|++++|.+.
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999988888875 788999999999998875
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.99 E-value=7.6e-10 Score=96.29 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=79.7
Q ss_pred eeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccChh-hhcCcCCcE
Q 010381 185 LQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQT 261 (512)
Q Consensus 185 Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~ 261 (512)
.++++++++... .+ ..+ .+.|++|++++|.++.+ |..|..+++|++|++++|.++.+|.. +..+++|++
T Consensus 11 ~~~l~~s~n~l~-----~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLA-----SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCS-----SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcC-----ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 356666666654 23 222 37788899999998866 56788899999999999999977765 578899999
Q ss_pred EecCCccccccchh-hhccccCceeecCCcccCC
Q 010381 262 LQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 262 L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~ 294 (512)
|+|++|.+..+|.. +..+++|++|++++|.+..
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999988888764 7789999999999988753
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.7e-08 Score=96.65 Aligned_cols=281 Identities=12% Similarity=0.060 Sum_probs=154.2
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCC------------C-
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIP------------S- 245 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~------------~- 245 (512)
.|.+|+++.+..+ .. .+ ...|.+|.+|+.+++..+ ++.++ ..|..+..|+.+.+..+ .
T Consensus 69 ~c~~L~~i~lp~~-i~-----~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VR-----EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TCTTEEEEECCTT-CC-----EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred CCCCceEEEeCCC-cc-----CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 6777777777533 22 34 333477778888777643 44333 34556666666554322 0
Q ss_pred --------Cccc-ChhhhcCcCCcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCC
Q 010381 246 --------LKCL-PSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPI 315 (512)
Q Consensus 246 --------i~~l-p~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~ 315 (512)
+..+ ...+.++.+|+.+.+..+ +..++ ..+..+.+|+.+++..+ +.......+.++..|+.+.+....
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 1111 123556677777777554 23333 23556777777766554 221223445666666666655421
Q ss_pred ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCC
Q 010381 316 SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMP 395 (512)
Q Consensus 316 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~ 395 (512)
...........+|+.+.+... ....-...+..+..|+.+.+..+... +..-.+..+ ..++.+......+. ..
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~-~~l~~~~~~~~~i~---~~ 291 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNC-SGLKKVIYGSVIVP---EK 291 (394)
T ss_dssp CEECTTTTTTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTC-TTCCEEEECSSEEC---TT
T ss_pred eEeehhhcccCCCceEEECCC---ceecccccccccccceeEEcCCCcce-eeccccccc-cccceeccCceeec---cc
Confidence 222233344556776666543 11111123456677777777653210 000034455 66666666554332 23
Q ss_pred CCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCc-ccCC
Q 010381 396 TLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPE-ELWC 473 (512)
Q Consensus 396 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~ 473 (512)
.+..+.+|+.+.+..+ +. .+.... +.++.+|+.++|.. .++.+. ..+.++.+|+.+.+..+ ++.++. .+.+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~-~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK-FIGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC-EECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTT
T ss_pred cccccccccccccccc-cc-eechhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhC
Confidence 4667778888887633 22 111222 56777888888864 366664 45667788888888654 454433 5677
Q ss_pred CCCCcEEEccCC
Q 010381 474 IQSLRKLDLHWP 485 (512)
Q Consensus 474 l~~L~~L~l~~~ 485 (512)
+++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 888888888654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.6e-10 Score=110.53 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCeeEEEEecCCcCCc-----cCccccC-ccccCeeeecCCCCcc--cChhhhcCcCCcEEecCCccccccc-----hhh
Q 010381 210 FKYLRVLDLGSAVLDQ-----FPPGLEN-LFLLKYLKLNIPSLKC--LPSQLCTLLNLQTLQMPSSYIDQSP-----EDI 276 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~-----lp~~l~~-l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~lp-----~~i 276 (512)
++.|+.|++++|.++. +...+.. ..+|++|+|++|.++. .......+.+|++|+|++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4567888888888762 2222222 2578888888887762 2222334667888888888765432 112
Q ss_pred -hccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccc--hhhhhhHHHhccCCCC
Q 010381 277 -WMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDL--SYYQSRVSKSLCKLQK 353 (512)
Q Consensus 277 -~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~ 353 (512)
...++|++|++++|.+..... ..+...+..+++|++|++++|. ......++..+...++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~------------------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGV------------------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHH------------------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred HhcCCccceeeCCCCCCChHHH------------------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 235667777777776531000 2233444566667777777663 1122334555555566
Q ss_pred CcEEEeccCCC
Q 010381 354 LEWLKLVNESK 364 (512)
Q Consensus 354 L~~L~l~~~~~ 364 (512)
|+.|++++|.+
T Consensus 213 L~~L~Ls~N~i 223 (372)
T 3un9_A 213 LQELNVAYNGA 223 (372)
T ss_dssp CCEEECCSSCC
T ss_pred cCeEECCCCCC
Confidence 66666666554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=96.68 Aligned_cols=76 Identities=21% Similarity=0.167 Sum_probs=37.3
Q ss_pred EecCC-cCCccCccccCccccCeeeecC-CCCcccC-hhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCccc
Q 010381 217 DLGSA-VLDQFPPGLENLFLLKYLKLNI-PSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 217 ~l~~~-~l~~lp~~l~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 292 (512)
+++++ .++.+|. +..+.+|++|+|++ |.++.+| ..++.+++|++|+|++|.+..+|+ .+.++++|++|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4445555 55555555555553 5555444 234455555555555555444432 344555555555555554
Q ss_pred C
Q 010381 293 P 293 (512)
Q Consensus 293 ~ 293 (512)
.
T Consensus 93 ~ 93 (347)
T 2ifg_A 93 E 93 (347)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-08 Score=95.71 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=68.9
Q ss_pred chhHHhcCCCeeEEEEecC-CcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchhhhc
Q 010381 202 DCENFCKKFKYLRVLDLGS-AVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPEDIWM 278 (512)
Q Consensus 202 ~~~~~~~~~~~L~~L~l~~-~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~i~~ 278 (512)
.++. +..+++|+.|+|++ |.++.+| ..|+.+++|++|+|++|.++.+|. .++++++|+.|+|++|.+..+|..+..
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 3444 37788888888885 7888666 568888888888888888885544 568888888888888888888766554
Q ss_pred cccCceeecCCcccC
Q 010381 279 MQKLMHLNFGSITLP 293 (512)
Q Consensus 279 l~~L~~L~l~~~~~~ 293 (512)
...|+.|++.+|.+.
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 445888888888764
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-06 Score=85.44 Aligned_cols=283 Identities=10% Similarity=0.075 Sum_probs=159.6
Q ss_pred CeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCc---CCccC-ccccCccccCeeeecCCCCcccCh-hhhcCc
Q 010381 184 YLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAV---LDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLL 257 (512)
Q Consensus 184 ~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~---l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~ 257 (512)
.|+++.+-..-. .+ +.-|.+|.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ++.++. .+..+.
T Consensus 65 ~L~sI~iP~svt------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 65 VLTSVQIPDTVT------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp CCCEEEECTTCC------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred cCEEEEECCCee------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 477777754321 34 3334888888888887653 55443 45677777887776553 443333 456778
Q ss_pred CCcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCC-ccCchhcCCCCCCCeEEEec
Q 010381 258 NLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPI-SCTPDILGRLPNIQTLRISG 335 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~-~~~~~~l~~l~~L~~L~l~~ 335 (512)
+|+.+.+... +..++ ..+..+.+|+.+.+..+-. .+....-....|+.+.+.... ......+..+.++.......
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~--~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVT--AIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred ccccccccce-eeeecccceecccccccccccceee--EeccccccccceeEEEECCcccccccchhhhccccceecccc
Confidence 8888887654 33333 3356777788887754321 222222223556666665421 11223345556666555433
Q ss_pred cchhhhhhHHHh--------------ccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCc
Q 010381 336 DLSYYQSRVSKS--------------LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLP 401 (512)
Q Consensus 336 ~~~~~~~~l~~~--------------l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~ 401 (512)
.. ....... ......+..+.+..+ +..+..-.+..+ ..|+.+.+..... ......+.+++
T Consensus 215 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c-~~L~~i~lp~~~~-~I~~~aF~~c~ 288 (394)
T 4gt6_A 215 ES---YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSC-AYLASVKMPDSVV-SIGTGAFMNCP 288 (394)
T ss_dssp SS---SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTC-SSCCEEECCTTCC-EECTTTTTTCT
T ss_pred cc---cccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeec-ccccEEecccccc-eecCccccccc
Confidence 21 0000000 001112222222110 000000045567 7888888765432 23345677888
Q ss_pred ccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCc-ccCCCCCCcE
Q 010381 402 YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRK 479 (512)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~ 479 (512)
+|+.+.+. +.+. ...... +.++.+|+.+.|.. .++.+. ..+.+|.+|+.+.+... ++.++. .+.+|++|+.
T Consensus 289 ~L~~i~l~-~~i~-~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 289 ALQDIEFS-SRIT-ELPESV-FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TCCEEECC-TTCC-EECTTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCE
T ss_pred ccccccCC-Cccc-ccCcee-ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCE
Confidence 89988886 3332 222222 67888999999975 466665 45778899999999643 566644 6788999999
Q ss_pred EEccCChHHH
Q 010381 480 LDLHWPQTEL 489 (512)
Q Consensus 480 L~l~~~~~~~ 489 (512)
+++.++...+
T Consensus 362 i~~~~~~~~~ 371 (394)
T 4gt6_A 362 IEYSGSRSQW 371 (394)
T ss_dssp EEESSCHHHH
T ss_pred EEECCceeeh
Confidence 9999887443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-08 Score=99.65 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=71.4
Q ss_pred HHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC--CCcccceeEEEcc--cccCce--
Q 010381 344 VSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE--KLPYVQVLKLKQN--SYLGRK-- 417 (512)
Q Consensus 344 l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~l~~~--~~~~~~-- 417 (512)
+...+..+++|+.|+++++.-..+. .+ .+ ++|++|++..|.+.......+. .+|+|+.|+|+.+ ...+..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~--~~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIG--KK-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCC--SC-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceec--cc-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 3444555666777766654211111 11 24 6777777776665433222232 5677777777531 111110
Q ss_pred ----eeeeCCCCCccccEEEecCCCCcceee---eCCCCccccceeeecCCcccC----CCCcccCCCCCCcEEEccCCh
Q 010381 418 ----LACVGSGGFPELKVLHLKSMYWLDEWT---MGAGAMPKLESLIVDPCAYLR----KLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 418 ----~~~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.... ...+|+|++|.+.+|......+ .....+|+|++|+++.|.... .++..+.++++|+.|++++|.
T Consensus 240 ~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 240 NVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGTGGGSC-TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHHh-cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 0111 2356777777777754332111 112356777777777665322 134444566777777777775
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.6e-06 Score=82.74 Aligned_cols=262 Identities=9% Similarity=0.026 Sum_probs=149.3
Q ss_pred hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccc--------
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSP-------- 273 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp-------- 273 (512)
..-|.++.+|+.+.+.. .++.+. .+|.+|.+|+.+++..+ ++.++. .+.++.+|+.+.+..+ +..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 33349999999999975 477654 56889999999999764 554443 4667788887766543 11111
Q ss_pred ---------------hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccC-chhcCCCCCCCeEEEeccc
Q 010381 274 ---------------EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCT-PDILGRLPNIQTLRISGDL 337 (512)
Q Consensus 274 ---------------~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~-~~~l~~l~~L~~L~l~~~~ 337 (512)
..+.++.+|+.+.+..+.. ......+.++.+|+.+.+..++..+ ...+..+..|+.+.+....
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCc
Confidence 1234455555555543321 1112334455555555554321111 1223444445544433321
Q ss_pred hhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce
Q 010381 338 SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 338 ~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
..+........+|+.+.+..... .+..-.+..+ ..++.+.+..+.. ......+..++.++.+......+..
T Consensus 220 ----~~i~~~~~~~~~l~~i~ip~~~~-~i~~~~f~~~-~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~-- 290 (394)
T 4fs7_A 220 ----YYLGDFALSKTGVKNIIIPDSFT-ELGKSVFYGC-TDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE-- 290 (394)
T ss_dssp ----CEECTTTTTTCCCCEEEECTTCC-EECSSTTTTC-SSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT--
T ss_pred ----eEeehhhcccCCCceEEECCCce-eccccccccc-ccceeEEcCCCcc-eeeccccccccccceeccCceeecc--
Confidence 00111122334566665543110 0000034456 7777777766532 2334456677777777766433222
Q ss_pred eeeeCCCCCccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCC-cccCCCCCCcEEEccCC
Q 010381 418 LACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLP-EELWCIQSLRKLDLHWP 485 (512)
Q Consensus 418 ~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~ 485 (512)
.. +.++.+|+.+.+.+ .++.+. ..+.++.+|+.+++... ++.++ ..+.++++|+.+.+..+
T Consensus 291 --~~-F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 291 --KT-FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp --TT-TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred --cc-cccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc
Confidence 12 66788999999975 466675 45678899999999743 55554 36788999999998654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-07 Score=81.71 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=75.3
Q ss_pred CCCCeeEEEEecC-Ccchhhhcch-hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCcc-----
Q 010381 181 SDMYLQSFLNHSS-ESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLKC----- 248 (512)
Q Consensus 181 ~~~~Lr~L~l~~~-~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~----- 248 (512)
..++|++|.+.++ .+....-..+ ..+ ...+.|++|+|++|.+. .+...+...+.|++|+|++|.|..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 5677888888877 6654333344 444 67778888888888776 234455566778888888887772
Q ss_pred cChhhhcCcCCcEEec--CCccccc-----cchhhhccccCceeecCCccc
Q 010381 249 LPSQLCTLLNLQTLQM--PSSYIDQ-----SPEDIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 249 lp~~~~~l~~L~~L~L--~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~ 292 (512)
+...+...++|++|+| ++|.++. +...+...++|++|++++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556666777888888 6676643 334556667788888877765
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.9e-07 Score=89.83 Aligned_cols=140 Identities=20% Similarity=0.182 Sum_probs=70.3
Q ss_pred ccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCcccccc-chhhh--ccccCceeecCCc--ccCCCCCCCCCCCC
Q 010381 230 LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS-PEDIW--MMQKLMHLNFGSI--TLPAPPTNYSSSLK 304 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l-p~~i~--~l~~L~~L~l~~~--~~~~~~p~~~~~l~ 304 (512)
+..+++|+.|+++++.-..++. + .+++|++|++..|.+..- ...+. .+++|++|+|+.+ ...+. .++
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~---- 239 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD--GDM---- 239 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC--SCG----
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc--hhH----
Confidence 3445566666665542113332 2 256666666665544221 12232 5677777776432 11000 000
Q ss_pred CCCeeecCCCCccCchhc--CCCCCCCeEEEeccchhhhhhHHHhc---cCCCCCcEEEeccCCCCC--Cccc--CcCCC
Q 010381 305 NLIFVSALHPISCTPDIL--GRLPNIQTLRISGDLSYYQSRVSKSL---CKLQKLEWLKLVNESKPS--RMVL--SEYQF 375 (512)
Q Consensus 305 ~L~~l~l~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~l---~~l~~L~~L~l~~~~~p~--L~~l--~~~~l 375 (512)
..+...+ ..+++|+.|++.+|. .....+..+ ..+++|+.|+|+.|.+.. .+.+ .+..+
T Consensus 240 -----------~~l~~~l~~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 240 -----------NVFRPLFSKDRFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306 (362)
T ss_dssp -----------GGTGGGSCTTTCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred -----------HHHHHHHhcCCCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence 0000111 346778888887773 332222222 346788888887766531 0000 23456
Q ss_pred CCCccEEEEecccCCC
Q 010381 376 PPSLTHLSLSNTELKE 391 (512)
Q Consensus 376 p~~L~~L~L~~~~~~~ 391 (512)
++|+.|++++|.++.
T Consensus 307 -~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 307 -KHLKFINMKYNYLSD 321 (362)
T ss_dssp -TTCSEEECCSBBCCH
T ss_pred -CcceEEECCCCcCCH
Confidence 788888888887654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.1e-06 Score=81.85 Aligned_cols=305 Identities=10% Similarity=0.056 Sum_probs=180.2
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L 236 (512)
..++.+.+. .....+.... .|.+|+++.+..+.... -..+ ...|..+..|+.+.+..+ ++.++ ..+..+.+|
T Consensus 64 ~~L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~--l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 64 YVLTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSC--VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp SCCCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCC--CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred CcCEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCe--eeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 347888887 5566655555 89999999997763221 1144 444488888888777654 44443 457888999
Q ss_pred CeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCC
Q 010381 237 KYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPI 315 (512)
Q Consensus 237 ~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~ 315 (512)
+.+.+..+ +..+ ...+..+.+|+.+.+..+ +..+........+|+.+.+..+.. ......+.++.++.........
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSS
T ss_pred ccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccccceecccccc
Confidence 99999754 3333 335678899999988765 445554444456788887754322 1233456666677665544210
Q ss_pred -ccCchh--------------cCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCcc
Q 010381 316 -SCTPDI--------------LGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLT 380 (512)
Q Consensus 316 -~~~~~~--------------l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~ 380 (512)
...... ......+..+.+-.. ....-...+..+.+|+.+.+..+.. .+..-.+..+ +.|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c-~~L~ 291 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNC-PALQ 291 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTC-TTCC
T ss_pred cccccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEecccccc-eecCcccccc-cccc
Confidence 000000 011122223322211 1111123567888999998865321 0000045677 8899
Q ss_pred EEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCccccceeeec
Q 010381 381 HLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVD 459 (512)
Q Consensus 381 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~ 459 (512)
.+.+.. .+.......|.++.+|+.+.+..+ +. .+.... +.++.+|+.+.|.. .++.+. ..+.+|++|+.+++.
T Consensus 292 ~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 292 DIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred cccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 998864 334444567889999999999743 22 121222 78889999999965 466664 467889999999999
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 460 PCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 460 ~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++.... ..+..+.+|+.+.+..+.
T Consensus 366 ~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 366 GSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp SCHHHH---HTCBCCCCC---------
T ss_pred Cceeeh---hhhhccCCCCEEEeCCCC
Confidence 865321 345677888888876554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-07 Score=81.36 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=56.6
Q ss_pred CCccEEEEecccCCCCCCCCCCCCcccceeEEEccc-ccCceeeeeCCCC----CccccEEEecCCCCccee-eeCCCCc
Q 010381 377 PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNS-YLGRKLACVGSGG----FPELKVLHLKSMYWLDEW-TMGAGAM 450 (512)
Q Consensus 377 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~----~~~L~~L~L~~~~~l~~l-~~~~~~l 450 (512)
..|+.|++++|.++......+..+++|++|+|++|. +++..+... .. .++|+.|+|++|+.++.- -..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L--~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL--SQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH--HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH--HhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 467888888877766666666777778888887775 444443332 22 246777777777766621 1224567
Q ss_pred cccceeeecCCcccCC
Q 010381 451 PKLESLIVDPCAYLRK 466 (512)
Q Consensus 451 ~~L~~L~l~~c~~l~~ 466 (512)
++|++|++++|+.++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 7777777777776654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-07 Score=79.09 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=80.7
Q ss_pred hhHHhcCCCeeEEEEecCC-cCC-----ccCccccCccccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCccccc
Q 010381 203 CENFCKKFKYLRVLDLGSA-VLD-----QFPPGLENLFLLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQ 271 (512)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~~-~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~ 271 (512)
+..+....+.|+.|+|++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|+|++|.++.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4444488899999999998 776 34556677788999999998886 244556667788888888887754
Q ss_pred -----cchhhhccccCceeec--CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccc
Q 010381 272 -----SPEDIWMMQKLMHLNF--GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDL 337 (512)
Q Consensus 272 -----lp~~i~~l~~L~~L~l--~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 337 (512)
+...+...++|++|++ ++|.+..... ..+...+...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~------------------~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVE------------------MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH------------------HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH------------------HHHHHHHHhCCCcCEEeccCCC
Confidence 3455667778888888 6676532100 1233445566777788877774
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.12 E-value=9.5e-07 Score=75.92 Aligned_cols=84 Identities=10% Similarity=0.096 Sum_probs=66.2
Q ss_pred cccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCC----ccccceeeecCCcccCCC-CcccCCC
Q 010381 401 PYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGA----MPKLESLIVDPCAYLRKL-PEELWCI 474 (512)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~l-p~~~~~l 474 (512)
.+|+.|++++|.+++..+.. +.++++|+.|+|++|..++..- ..+.. +++|++|++++|+.++.- -..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 46999999999988777665 5789999999999998887321 12233 468999999999877641 1235679
Q ss_pred CCCcEEEccCCh
Q 010381 475 QSLRKLDLHWPQ 486 (512)
Q Consensus 475 ~~L~~L~l~~~~ 486 (512)
++|++|++++|+
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999997
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.11 E-value=8.3e-05 Score=73.16 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=48.6
Q ss_pred ccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCc
Q 010381 348 LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFP 427 (512)
Q Consensus 348 l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 427 (512)
+..+.+|+.+.+..+ +..+..-.+..+ .+|+.+.+..+ +.......|.++++|+.+.+.++.+.... ... +.++.
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~-~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-~~a-F~~c~ 310 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNC-TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLE-PRV-FMDCV 310 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTC-TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEEC-TTT-TTTCT
T ss_pred ccCCccceEEEcCCC-ccEeCcccccee-ehhcccccccc-ceeccccccccccccccccccccccceeh-hhh-hcCCC
Confidence 344555555555432 110000033445 55666665432 22223334556666666666544332211 111 45556
Q ss_pred cccEEEecCCCCcceee-eCCCCccccceeeec
Q 010381 428 ELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVD 459 (512)
Q Consensus 428 ~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~ 459 (512)
+|+.+.|.. .++.+. ..+.+|++|+.+.+.
T Consensus 311 ~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 311 KLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred CCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 666666643 344443 234555666666554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00043 Score=67.97 Aligned_cols=129 Identities=9% Similarity=0.066 Sum_probs=85.6
Q ss_pred hccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCC
Q 010381 347 SLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF 426 (512)
Q Consensus 347 ~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 426 (512)
.+..+.+|+.+.+..+.. .+..-.+..+ ..|+.+.+..+ ++......+.++.+|+.+.+..+ +. ...... +.++
T Consensus 212 ~f~~~~~l~~i~~~~~~~-~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~a-F~~c 285 (379)
T 4h09_A 212 GFSYGKNLKKITITSGVT-TLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLL-CSGC 285 (379)
T ss_dssp TTTTCSSCSEEECCTTCC-EECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTT-TTTC
T ss_pred ccccccccceeeecccee-EEccccccCC-ccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccc-cccc
Confidence 344566777777654211 0000045567 88999998765 33344556788899999998632 22 222222 6788
Q ss_pred ccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCc-ccCCCCCCcEEEccC
Q 010381 427 PELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRKLDLHW 484 (512)
Q Consensus 427 ~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 484 (512)
++|+.+.+.+ ..++.++ ..+.++.+|+.+.+... ++.++. .+.++++|+.+.+..
T Consensus 286 ~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 286 SNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccc-cccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 9999999987 4577775 45778999999999743 555544 578899999888854
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=73.08 Aligned_cols=78 Identities=21% Similarity=0.157 Sum_probs=47.1
Q ss_pred cCCCeeEEEEecCCcCCc---cCccccCccccCeeeecCCCCcccChhhhcCc--CCcEEecCCcccc-ccc-------h
Q 010381 208 KKFKYLRVLDLGSAVLDQ---FPPGLENLFLLKYLKLNIPSLKCLPSQLCTLL--NLQTLQMPSSYID-QSP-------E 274 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~---lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~L~~~~~~-~lp-------~ 274 (512)
.++++|+.|+|++|.++. +|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456677777777777663 334555677777777777776654 2344444 6777777777553 233 1
Q ss_pred hhhccccCceee
Q 010381 275 DIWMMQKLMHLN 286 (512)
Q Consensus 275 ~i~~l~~L~~L~ 286 (512)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245666676664
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.75 E-value=2.4e-05 Score=72.37 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=49.3
Q ss_pred cCccccCeeeecCCCCcc---cChhhhcCcCCcEEecCCccccccchhhhccc--cCceeecCCcccCCCCC
Q 010381 231 ENLFLLKYLKLNIPSLKC---LPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQ--KLMHLNFGSITLPAPPT 297 (512)
Q Consensus 231 ~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~--~L~~L~l~~~~~~~~~p 297 (512)
.++++|+.|+|++|.++. +|..++.+++|+.|+|++|.+..+ ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 457788888888888774 445667888888888888888766 3355555 88888888888765544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0012 Score=57.67 Aligned_cols=110 Identities=11% Similarity=0.040 Sum_probs=61.9
Q ss_pred CCCCeeEEEEecC-Ccchhhhcch-hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCc-----c
Q 010381 181 SDMYLQSFLNHSS-ESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLK-----C 248 (512)
Q Consensus 181 ~~~~Lr~L~l~~~-~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~ 248 (512)
.-+.|+.|.+.++ .+....-..+ +.+ ..-..|+.|+|++|.+. .+-+.+..-..|++|+|++|.|. .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3456667777654 4433222334 555 66677777777777765 33344555566777777777766 2
Q ss_pred cChhhhcCcCCcEEecCCc---ccc-----ccchhhhccccCceeecCCcc
Q 010381 249 LPSQLCTLLNLQTLQMPSS---YID-----QSPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 249 lp~~~~~l~~L~~L~L~~~---~~~-----~lp~~i~~l~~L~~L~l~~~~ 291 (512)
+-..+..-..|++|+|+++ .++ .+-..+..-+.|+.|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3333444455777777654 222 122334555667777665543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0041 Score=54.25 Aligned_cols=88 Identities=10% Similarity=0.116 Sum_probs=52.9
Q ss_pred hhHHhcCCCeeEEEEecCC-cCC-----ccCccccCccccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCccccc
Q 010381 203 CENFCKKFKYLRVLDLGSA-VLD-----QFPPGLENLFLLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQ 271 (512)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~~-~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~ 271 (512)
+..+..+-+.|+.|+|+++ .+. .+-+.+..-..|+.|+|++|.|. .+...+..-+.|++|+|++|.|+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3444466778888888875 555 34455666667788888777776 233334455667777777776643
Q ss_pred -----cchhhhccccCceeecCCc
Q 010381 272 -----SPEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 272 -----lp~~i~~l~~L~~L~l~~~ 290 (512)
+-..+..-+.|++|+++++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 2233444455666666543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.021 Score=46.27 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=35.1
Q ss_pred EEEecCCcCC--ccCccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccc
Q 010381 215 VLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYI 269 (512)
Q Consensus 215 ~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~ 269 (512)
+++.++..++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5667777776 7775432 3577777777777766654 45677777777777633
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.035 Score=44.92 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=39.9
Q ss_pred CeeeecCCCCc--ccChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCccc
Q 010381 237 KYLKLNIPSLK--CLPSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITL 292 (512)
Q Consensus 237 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~ 292 (512)
..++-+++.++ .+|..+. .+|++|+|++|.++.+|.. +..+++|+.|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 35667777777 7775543 4688888888888888755 56788888888888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 512 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-05 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 49/305 (16%), Positives = 106/305 (34%), Gaps = 42/305 (13%)
Query: 213 LRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYID 270
+LDL + + + G +NL L L L + + P L+ L+ L + + +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 271 QSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQT 330
+ PE + + + ++ IT + L +
Sbjct: 93 ELPEKMPKTLQELRVHENEIT------------------------KVRKSVFNGLNQMIV 128
Query: 331 LRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELK 390
+ + + + + ++KL ++++ + + + PPSLT L L ++
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIAD----TNITTIPQGLPPSLTELHLDGNKIT 184
Query: 391 EDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAM 450
+ +L+ L + L L NS + + P L+ LHL + L + G
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHL-NNNKLVKVPGGLADH 241
Query: 451 PKLESLIVDPCAYLRKLPEELWCI-------QSLRKLDL-HWPQTELRQRLRTFKDMEWR 502
++ + + + + +C S + L P + TF+ + R
Sbjct: 242 KYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300
Query: 503 YDIQL 507
+QL
Sbjct: 301 AAVQL 305
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 512 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.88 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.86 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.86 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.85 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.84 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.78 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.76 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.75 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.73 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.71 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.67 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.63 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.61 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.56 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.53 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.52 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.49 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.48 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.45 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.45 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.39 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.34 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.19 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.16 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.15 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.14 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.13 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.11 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.06 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 98.92 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.82 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.72 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.01 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.81 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.77 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.39 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.37 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.16 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.88 E-value=2.8e-22 Score=197.67 Aligned_cols=297 Identities=18% Similarity=0.137 Sum_probs=187.6
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..++++.+..+.+..+ ... .+++|++|++++|.+. .++.+ .++++|++|++++|.+..+++ ++.+++|++|
T Consensus 44 ~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~-----~l~~l-~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L 115 (384)
T d2omza2 44 DQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLT-----DITPL-KNLTKLVDILMNNNQIADITP-LANLTNLTGL 115 (384)
T ss_dssp TTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred CCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCC-----CCccc-cCCcccccccccccccccccc-cccccccccc
Confidence 3566666664444432 233 5666666666666654 33334 666666666666666665443 5666666666
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCccc------------------------------------------cccchhhh
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYI------------------------------------------DQSPEDIW 277 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~------------------------------------------~~lp~~i~ 277 (512)
+++++.++.++.. .....+..+....+.+ ...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (384)
T d2omza2 116 TLFNNQITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194 (384)
T ss_dssp ECCSSCCCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 6666655543322 1122222222111100 11112345
Q ss_pred ccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEE
Q 010381 278 MMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWL 357 (512)
Q Consensus 278 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L 357 (512)
.+++++.+++++|.+.+..| .+..++|+.+++++..-..+..+..+++|+.|+++++. .. .++ .+..+++|+.|
T Consensus 195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~-~~~-~~~~~~~L~~L 268 (384)
T d2omza2 195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--IS-NLA-PLSGLTKLTEL 268 (384)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CC-CCG-GGTTCTTCSEE
T ss_pred cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcchhhcccccchhccccCc--cC-CCC-cccccccCCEe
Confidence 66777777777776654322 35566777777775212334456777788888887773 22 222 35667788888
Q ss_pred EeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCC
Q 010381 358 KLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM 437 (512)
Q Consensus 358 ~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (512)
+++++.+..+. .+..+ +.++.+.+..|.+.+ +..+..+++++.|++++|.+.+... +..+++|++|++++|
T Consensus 269 ~l~~~~l~~~~--~~~~~-~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~----l~~l~~L~~L~L~~n 339 (384)
T d2omza2 269 KLGANQISNIS--PLAGL-TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFANN 339 (384)
T ss_dssp ECCSSCCCCCG--GGTTC-TTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSS
T ss_pred eccCcccCCCC--ccccc-ccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc----cccCCCCCEEECCCC
Confidence 88777665443 44566 778888888877654 3457788899999999888876431 567899999999996
Q ss_pred CCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCC
Q 010381 438 YWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWP 485 (512)
Q Consensus 438 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~ 485 (512)
.++.++ .++.+++|++|++++|. ++.++. +.++++|+.|+|++|
T Consensus 340 -~l~~l~-~l~~l~~L~~L~l~~N~-l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 340 -KVSDVS-SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp -CCCCCG-GGGGCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEECCCE
T ss_pred -CCCCCh-hHcCCCCCCEEECCCCc-CCCChh-hccCCCCCEeeCCCC
Confidence 677776 47889999999999986 566654 788999999999886
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.86 E-value=2.7e-21 Score=184.44 Aligned_cols=262 Identities=18% Similarity=0.161 Sum_probs=193.6
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCcccccc-chhhhccccCceeecCC
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~ 289 (512)
.++.++-++..++++|..+. +++++|++++|+|+.+|+ .+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 45667777777888887664 578888888888888775 577888888888888877666 44577888888888888
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccC-chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCT-PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
|.+. .+|..+ ...+..+...+ .+... ...+.....+..+....+........+..+..+++|+.++++++.+..+
T Consensus 89 n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l 165 (305)
T d1xkua_ 89 NQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 165 (305)
T ss_dssp SCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence 8775 455432 23556666553 21222 2334566677777776654233344455677888999999998776542
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA 447 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 447 (512)
. ...+ ++|++|++++|......+..+..++.+++|++++|.+.+..... +.++++|++|+|++| .++.+|..+
T Consensus 166 ~---~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~--~~~l~~L~~L~L~~N-~L~~lp~~l 238 (305)
T d1xkua_ 166 P---QGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNN-KLVKVPGGL 238 (305)
T ss_dssp C---SSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSS-CCSSCCTTT
T ss_pred C---cccC-CccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc--ccccccceeeecccc-ccccccccc
Confidence 1 1234 89999999999888777888899999999999998886654433 577899999999995 788898889
Q ss_pred CCccccceeeecCCcccCCCCc-------ccCCCCCCcEEEccCCh
Q 010381 448 GAMPKLESLIVDPCAYLRKLPE-------ELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~lp~-------~~~~l~~L~~L~l~~~~ 486 (512)
..+++|+.|++++|+ ++.++. .....++|+.|++++||
T Consensus 239 ~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 239 ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence 999999999999986 666643 23567899999999998
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.86 E-value=4.3e-21 Score=188.99 Aligned_cols=280 Identities=19% Similarity=0.206 Sum_probs=192.1
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
++.++++|.+.++.+. .++.+ ..+++|++|++++|.++.+|. ++++++|++|++++|.++.++ .++++++|+
T Consensus 42 ~l~~l~~L~l~~~~I~-----~l~gl-~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~ 113 (384)
T d2omza2 42 DLDQVTTLQADRLGIK-----SIDGV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLT 113 (384)
T ss_dssp HHTTCCEEECCSSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCC
T ss_pred HhCCCCEEECCCCCCC-----Ccccc-ccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccccc-ccccccccc
Confidence 5678999999888776 44556 778999999999999988765 888999999999999988776 478899999
Q ss_pred EEecCCccccccchhhhccccCceeecCCcccCC-----------------------------------------CCCCC
Q 010381 261 TLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPA-----------------------------------------PPTNY 299 (512)
Q Consensus 261 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-----------------------------------------~~p~~ 299 (512)
.|++.++.+..++. ......+..+....+.+.. ..+..
T Consensus 114 ~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (384)
T d2omza2 114 GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192 (384)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 99998887766553 2233344444333322211 11223
Q ss_pred CCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCc
Q 010381 300 SSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSL 379 (512)
Q Consensus 300 ~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L 379 (512)
...++++..+++.+...........+++|++|+++++. ...+ ..+..+++|+.|++++|.+..+. .+..+ ++|
T Consensus 193 ~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~-~~L 265 (384)
T d2omza2 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ---LKDI-GTLASLTNLTDLDLANNQISNLA--PLSGL-TKL 265 (384)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSSCCCCCG--GGTTC-TTC
T ss_pred cccccccceeeccCCccCCCCcccccCCCCEEECCCCC---CCCc-chhhcccccchhccccCccCCCC--ccccc-ccC
Confidence 34455556666654111112234556677777777662 2222 24566677777777776665443 34566 777
Q ss_pred cEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeec
Q 010381 380 THLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVD 459 (512)
Q Consensus 380 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 459 (512)
++|+++++.+.+. ..+..++.++.+.+.+|.+.+.. . +..+++++.|+++++ .++.++. +..+++|++|+++
T Consensus 266 ~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~~--~--~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~ 337 (384)
T d2omza2 266 TELKLGANQISNI--SPLAGLTALTNLELNENQLEDIS--P--ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFA 337 (384)
T ss_dssp SEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCCG--G--GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECC
T ss_pred CEeeccCcccCCC--Ccccccccccccccccccccccc--c--cchhcccCeEECCCC-CCCCCcc-cccCCCCCEEECC
Confidence 7777777776532 23566777777777777665422 1 466789999999995 6677653 7889999999999
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 460 PCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 460 ~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|. ++.++ .+..+++|++|++++|+
T Consensus 338 ~n~-l~~l~-~l~~l~~L~~L~l~~N~ 362 (384)
T d2omza2 338 NNK-VSDVS-SLANLTNINWLSAGHNQ 362 (384)
T ss_dssp SSC-CCCCG-GGGGCTTCCEEECCSSC
T ss_pred CCC-CCCCh-hHcCCCCCCEEECCCCc
Confidence 996 67776 58899999999999987
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.85 E-value=2.8e-22 Score=192.15 Aligned_cols=243 Identities=19% Similarity=0.226 Sum_probs=151.0
Q ss_pred CeeEEEEecCCcCC---ccCccccCccccCeeeecC-CCCc-ccChhhhcCcCCcEEecCCcccccc-chhhhccccCce
Q 010381 211 KYLRVLDLGSAVLD---QFPPGLENLFLLKYLKLNI-PSLK-CLPSQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMH 284 (512)
Q Consensus 211 ~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~ 284 (512)
.+++.|+|+++.++ .+|+.++++++|++|++++ |.++ .+|..++++++|++|+|++|.+..+ |..+..+.+|++
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 45777788877765 5778888888888888876 5666 7888888888888888888876554 445777888888
Q ss_pred eecCCcccCCCCCCCCCCCCCCCeeecCCC-C-ccCchhcCCCCCC-CeEEEeccchhhhhhHHHhccCCCCCcEEEecc
Q 010381 285 LNFGSITLPAPPTNYSSSLKNLIFVSALHP-I-SCTPDILGRLPNI-QTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVN 361 (512)
Q Consensus 285 L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~-~-~~~~~~l~~l~~L-~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 361 (512)
+++++|.+.+.+|..+++++.|+.++++++ + +..|..+..+.++ +.+.++.+ ......+..+..+.. ..+++..
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n--~l~~~~~~~~~~l~~-~~l~l~~ 206 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLNL-AFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCCC-SEEECCS
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccc--ccccccccccccccc-ccccccc
Confidence 888888777777777777777777777641 1 3456666666665 56666665 233333444444432 2455554
Q ss_pred CC----CCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCC
Q 010381 362 ES----KPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM 437 (512)
Q Consensus 362 ~~----~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (512)
+. +|. .+..+ ++++.++++++.+.+.+ +.++.+++|+.|++++|.+.+..+.. ++.+++|++|+|++|
T Consensus 207 ~~~~~~~~~----~~~~~-~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~--l~~L~~L~~L~Ls~N 278 (313)
T d1ogqa_ 207 NMLEGDASV----LFGSD-KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEEECCGG----GCCTT-SCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSS
T ss_pred ccccccccc----ccccc-ccccccccccccccccc-cccccccccccccCccCeecccCChH--HhCCCCCCEEECcCC
Confidence 32 233 34445 56666666666554332 24555566666666666665544433 455666666666663
Q ss_pred CCcc-eeeeCCCCccccceeeecCCcccCC
Q 010381 438 YWLD-EWTMGAGAMPKLESLIVDPCAYLRK 466 (512)
Q Consensus 438 ~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~ 466 (512)
.++ .+|. .+.+++|+.+++++|+.+..
T Consensus 279 -~l~g~iP~-~~~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 279 -NLCGEIPQ-GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -EEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred -cccccCCC-cccCCCCCHHHhCCCccccC
Confidence 333 4443 45566666666666654443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.84 E-value=4.7e-22 Score=190.54 Aligned_cols=250 Identities=16% Similarity=0.204 Sum_probs=200.8
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecC-CcCC-ccCccccCccccCeeeecCCCCc-ccChhhhcCcC
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGS-AVLD-QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLN 258 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~-~~l~-~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~ 258 (512)
.+++.|++.++.... ...+ +.+ .++++|++|+|++ |.+. .+|..++++++|++|++++|.+. ..|..+..+.+
T Consensus 50 ~~v~~L~L~~~~l~g--~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~ 126 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPK--PYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred EEEEEEECCCCCCCC--CCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence 468888888887653 2245 555 8999999999987 6677 89999999999999999999998 45666889999
Q ss_pred CcEEecCCc-cccccchhhhccccCceeecCCcccCCCCCCCCCCCCCC-CeeecCCC-C-ccCchhcCCCCCCCeEEEe
Q 010381 259 LQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL-IFVSALHP-I-SCTPDILGRLPNIQTLRIS 334 (512)
Q Consensus 259 L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L-~~l~l~~~-~-~~~~~~l~~l~~L~~L~l~ 334 (512)
|+.+++++| ....+|..+.++++|+++++++|.+.+.+|..+..+..+ +.+++.++ + +..+..+..+..+ .+++.
T Consensus 127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~ 205 (313)
T d1ogqa_ 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECC
T ss_pred hcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 999999999 456788999999999999999999988999999888887 67777641 1 3345555555443 67777
Q ss_pred ccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEccccc
Q 010381 335 GDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYL 414 (512)
Q Consensus 335 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 414 (512)
.+ .....+|..+..+++++.++++++.+...-. .+..+ ++|+.|++++|.+++..|+.++++++|++|+|++|.+.
T Consensus 206 ~~--~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~ 281 (313)
T d1ogqa_ 206 RN--MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SS--EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCC-TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred cc--ccccccccccccccccccccccccccccccc-ccccc-cccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence 76 4666678888899999999999876532000 45566 99999999999999889999999999999999999998
Q ss_pred CceeeeeCCCCCccccEEEecCCCCccee
Q 010381 415 GRKLACVGSGGFPELKVLHLKSMYWLDEW 443 (512)
Q Consensus 415 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 443 (512)
+..+. .+.+++|+.+++++++.+...
T Consensus 282 g~iP~---~~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 282 GEIPQ---GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EECCC---STTGGGSCGGGTCSSSEEEST
T ss_pred ccCCC---cccCCCCCHHHhCCCccccCC
Confidence 76653 578899999999997655543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.78 E-value=7.4e-19 Score=167.27 Aligned_cols=241 Identities=15% Similarity=0.142 Sum_probs=142.7
Q ss_pred CeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchhhhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 288 (512)
+.+++|++++|.++.+|+ .|.++++|++|++++|.+..+ |..+.++++|++|++++|+++.+|..+ ...++.|++.
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~ 108 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVH 108 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhcc
Confidence 345666666666665553 455566666666666665544 334556666666666666665555432 2455555555
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCC----CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHP----ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
+|.+....+..+.....+..+..... .......+..+++|+.+++.++. ...++.. .+++|+.|++++|..
T Consensus 109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~---l~~l~~~--~~~~L~~L~l~~n~~ 183 (305)
T d1xkua_ 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQG--LPPSLTELHLDGNKI 183 (305)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSS--CCTTCSEEECTTSCC
T ss_pred ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC---ccccCcc--cCCccCEEECCCCcC
Confidence 55554322222333444444444320 02223445666777777777662 2222222 356777888877654
Q ss_pred CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT 444 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 444 (512)
.....-.+..+ +.+++|++++|.+.+..+..+.++++|++|++++|.+... +. . +..+++|++|++++| .++.++
T Consensus 184 ~~~~~~~~~~~-~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~-~-l~~l~~L~~L~Ls~N-~i~~i~ 258 (305)
T d1xkua_ 184 TKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PG-G-LADHKYIQVVYLHNN-NISAIG 258 (305)
T ss_dssp CEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CT-T-TTTCSSCCEEECCSS-CCCCCC
T ss_pred CCCChhHhhcc-ccccccccccccccccccccccccccceeeeccccccccc-cc-c-cccccCCCEEECCCC-ccCccC
Confidence 21111155667 7888888888888777777788888888888888877543 22 2 677888888888884 566664
Q ss_pred e-------CCCCccccceeeecCCcc
Q 010381 445 M-------GAGAMPKLESLIVDPCAY 463 (512)
Q Consensus 445 ~-------~~~~l~~L~~L~l~~c~~ 463 (512)
. .....++|+.|++++|+.
T Consensus 259 ~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 259 SNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hhhccCcchhcccCCCCEEECCCCcC
Confidence 2 123567888899988874
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.6e-18 Score=161.36 Aligned_cols=83 Identities=17% Similarity=0.120 Sum_probs=65.8
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchhhhccccCceee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLN 286 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 286 (512)
.+...+...+.+++.++.+|+.+. ++|++|+|++|.|+.+|. .+.++++|++|+|++|.++.+|. ++.+++|++|+
T Consensus 7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~ 83 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD 83 (266)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence 344555566888888888887764 578999999999987764 57888999999999998888774 56788899999
Q ss_pred cCCcccC
Q 010381 287 FGSITLP 293 (512)
Q Consensus 287 l~~~~~~ 293 (512)
+++|.+.
T Consensus 84 Ls~N~l~ 90 (266)
T d1p9ag_ 84 LSHNQLQ 90 (266)
T ss_dssp CCSSCCS
T ss_pred ccccccc
Confidence 8888774
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6e-18 Score=159.13 Aligned_cols=113 Identities=19% Similarity=0.083 Sum_probs=87.9
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCc
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAM 450 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l 450 (512)
.+... ++|+.+++++|.++..++..++.+++|+.|++++|.+....... +.++++|+.++++++......|..+..+
T Consensus 124 ~~~~~-~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~--f~~l~~L~~l~l~~N~l~~i~~~~f~~l 200 (284)
T d1ozna_ 124 LFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (284)
T ss_dssp TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ccchh-cccchhhhccccccccChhHhccccchhhcccccCcccccchhh--hccccccchhhhhhccccccChhHhhhh
Confidence 34455 88888899888888777777888889999999988876443322 6788899999999864443446778889
Q ss_pred cccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 451 PKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 451 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++|++|++++|......|..+..+++|+.|++++||
T Consensus 201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hhcccccccccccccccccccccccccCEEEecCCC
Confidence 999999999988666566678889999999998864
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.6e-18 Score=161.64 Aligned_cols=214 Identities=16% Similarity=0.124 Sum_probs=114.2
Q ss_pred EecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcc-cC
Q 010381 217 DLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSIT-LP 293 (512)
Q Consensus 217 ~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~-~~ 293 (512)
+.+++.++.+|..+. ..+++|+|++|+|+.+|. .+.++++|++|+++++.+..++.. +..+..+++++...+. +.
T Consensus 17 ~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~ 94 (284)
T d1ozna_ 17 SCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (284)
T ss_dssp ECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 344444555554432 345566666666655553 355556666666665555544432 3345555555443322 22
Q ss_pred CCCCCCCCCCCCCCeeecCC-CCc-cCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccC
Q 010381 294 APPTNYSSSLKNLIFVSALH-PIS-CTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLS 371 (512)
Q Consensus 294 ~~~p~~~~~l~~L~~l~l~~-~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~ 371 (512)
...|..+.++++|+.+++++ .+. .....+..+.+|+.+++.++ ......+..+..+++|+.|++++|.+..+..-.
T Consensus 95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N--~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~ 172 (284)
T d1ozna_ 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (284)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccc--cccccChhHhccccchhhcccccCcccccchhh
Confidence 22234455555555555553 111 12233445555666666655 122222234555566666666665542211114
Q ss_pred cCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCC
Q 010381 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM 437 (512)
Q Consensus 372 ~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (512)
+..+ ++|+.+++++|.+++..+..|..+++|++|++++|.+.+..+.. ++.+++|++|+++++
T Consensus 173 f~~l-~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~--~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 173 FRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDN 235 (284)
T ss_dssp TTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSS
T ss_pred hccc-cccchhhhhhccccccChhHhhhhhhcccccccccccccccccc--cccccccCEEEecCC
Confidence 5566 77777777777776666667777777777777777765544333 466677777777764
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=5.3e-17 Score=150.93 Aligned_cols=197 Identities=22% Similarity=0.227 Sum_probs=126.5
Q ss_pred CccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCCCCeee
Q 010381 232 NLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS 310 (512)
Q Consensus 232 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 310 (512)
+...+...+.++++++.+|..+. +++++|+|++|.++.+|. .+.++++|++|++++|.+. .+|
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~------------- 71 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ------------- 71 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-------------
T ss_pred ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-------------
Confidence 34456666888888999987664 589999999999988874 5788999999999998774 222
Q ss_pred cCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCC
Q 010381 311 ALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELK 390 (512)
Q Consensus 311 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~ 390 (512)
..+.+++|++|+++++. ... ++. .+..+ ++|+.|+++++.+.
T Consensus 72 ----------~~~~l~~L~~L~Ls~N~---l~~--------------------~~~----~~~~l-~~L~~L~l~~~~~~ 113 (266)
T d1p9ag_ 72 ----------VDGTLPVLGTLDLSHNQ---LQS--------------------LPL----LGQTL-PALTVLDVSFNRLT 113 (266)
T ss_dssp ----------CCSCCTTCCEEECCSSC---CSS--------------------CCC----CTTTC-TTCCEEECCSSCCC
T ss_pred ----------ccccccccccccccccc---ccc--------------------ccc----ccccc-cccccccccccccc
Confidence 12345555555555551 111 112 33445 56666666666655
Q ss_pred CCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCc
Q 010381 391 EDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPE 469 (512)
Q Consensus 391 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~ 469 (512)
...+..+..+++++.|.+++|.+....... +..+++|+.|+++++ .++.++ ..++.+++|++|++++|. ++.+|.
T Consensus 114 ~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~--~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~ 189 (266)
T d1p9ag_ 114 SLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPK 189 (266)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred eeeccccccccccccccccccccceecccc--ccccccchhcccccc-cccccCccccccccccceeecccCC-CcccCh
Confidence 555555566666666666666654332222 455667777777763 455444 345667777777777776 557777
Q ss_pred ccCCCCCCcEEEccCCh
Q 010381 470 ELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 470 ~~~~l~~L~~L~l~~~~ 486 (512)
++..+++|+.|++++||
T Consensus 190 ~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 190 GFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTTTTCCCSEEECCSCC
T ss_pred hHCCCCCCCEEEecCCC
Confidence 77777777777777765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.67 E-value=3.6e-16 Score=151.22 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=71.8
Q ss_pred ceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeee
Q 010381 162 NVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKL 241 (512)
Q Consensus 162 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l 241 (512)
.+++|.++.+....+|. ..++|++|.+++|.+. .++ ..+.+|+.|++++|.++.+++.. +.|++|++
T Consensus 39 ~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~-----~lp---~~~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L 105 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPE--LPPHLESLVASCNSLT-----ELP---ELPQSLKSLLVDNNNLKALSDLP---PLLEYLGV 105 (353)
T ss_dssp TCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCS-----SCC---CCCTTCCEEECCSSCCSCCCSCC---TTCCEEEC
T ss_pred CCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCc-----ccc---cchhhhhhhhhhhcccchhhhhc---cccccccc
Confidence 35566666444444332 3456777777666554 221 23456666667666665444311 24677777
Q ss_pred cCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecC
Q 010381 242 NIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 242 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
++|.++.+|. ++.+++|++|+++++.+...|... ..+..+.+..+.. ..+..++.++.++.+.+.
T Consensus 106 ~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~--~~~~~l~~l~~l~~L~l~ 170 (353)
T d1jl5a_ 106 SNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL--EELPELQNLPFLTAIYAD 170 (353)
T ss_dssp CSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC--SSCCCCTTCTTCCEEECC
T ss_pred cccccccccc-hhhhccceeecccccccccccccc---ccccchhhccccc--cccccccccccceecccc
Confidence 7777666663 456677777777666655554432 3344444444333 223345556666666654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=5.8e-16 Score=140.20 Aligned_cols=187 Identities=19% Similarity=0.238 Sum_probs=100.8
Q ss_pred CCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCC
Q 010381 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~ 289 (512)
+.+|+.|++.+|.++.++ .++.+++|++|++++|.++.++ .+.++++|+++++++|.++.++ .+.++++|+.+++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~ 116 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (227)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence 344555555555555542 3555555555555555555443 2555555555555555555443 245555555555555
Q ss_pred cccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcc
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMV 369 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~ 369 (512)
+... ....+...+.++.+.+.++. .... ..+..+++|+.|+++++.+....
T Consensus 117 ~~~~------------------------~~~~~~~~~~~~~l~~~~~~--~~~~--~~~~~~~~L~~L~l~~n~~~~~~- 167 (227)
T d1h6ua2 117 TQIT------------------------DVTPLAGLSNLQVLYLDLNQ--ITNI--SPLAGLTNLQYLSIGNAQVSDLT- 167 (227)
T ss_dssp SCCC------------------------CCGGGTTCTTCCEEECCSSC--CCCC--GGGGGCTTCCEEECCSSCCCCCG-
T ss_pred cccc------------------------ccchhccccchhhhhchhhh--hchh--hhhccccccccccccccccccch-
Confidence 4432 22223444455555554441 1111 12344556666666665554322
Q ss_pred cCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecC
Q 010381 370 LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKS 436 (512)
Q Consensus 370 l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (512)
.+..+ ++|++|++++|.+++ .+.++++++|++|++++|++++.. . ++++++|+.|+|++
T Consensus 168 -~l~~l-~~L~~L~Ls~n~l~~--l~~l~~l~~L~~L~Ls~N~lt~i~-~---l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 168 -PLANL-SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS-P---LANTSNLFIVTLTN 226 (227)
T ss_dssp -GGTTC-TTCCEEECCSSCCCC--CGGGGGCTTCCEEECTTSCCCBCG-G---GTTCTTCCEEEEEE
T ss_pred -hhccc-ccceecccCCCccCC--ChhhcCCCCCCEEECcCCcCCCCc-c---cccCCCCCEEEeeC
Confidence 34566 677777777776653 234667777777777777665432 1 46677777777753
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.63 E-value=5.5e-15 Score=142.70 Aligned_cols=267 Identities=18% Similarity=0.144 Sum_probs=151.6
Q ss_pred CCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEE
Q 010381 183 MYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTL 262 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 262 (512)
.+++.|+++++... .++ ...++|++|++++|.++.+|+.+ .+|+.|++++|.++.++.. .+.|++|
T Consensus 38 ~~l~~LdLs~~~L~-----~lp---~~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L 103 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-----SLP---ELPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYL 103 (353)
T ss_dssp HTCSEEECTTSCCS-----CCC---SCCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEE
T ss_pred cCCCEEEeCCCCCC-----CCC---CCCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccc
Confidence 45778888777654 233 23467888888888888887654 4677778888777766531 1458888
Q ss_pred ecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhh
Q 010381 263 QMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQS 342 (512)
Q Consensus 263 ~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 342 (512)
++++|.+..+|. ++.+++|++|+++++.+. ..|... ..+..+.+..........+..++.++.+.+..+......
T Consensus 104 ~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~-~~~~~~---~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~ 178 (353)
T d1jl5a_ 104 GVSNNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP 178 (353)
T ss_dssp ECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred cccccccccccc-hhhhccceeecccccccc-cccccc---ccccchhhccccccccccccccccceecccccccccccc
Confidence 888888888875 567888888888877764 333333 334444444311333445667778888887765300000
Q ss_pred ----------------hHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCccccee
Q 010381 343 ----------------RVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVL 406 (512)
Q Consensus 343 ----------------~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 406 (512)
........++.|+.++++++.... ..... .++..+.+..+.+... +.. .+.+...
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~----~~~~~-~~l~~~~~~~~~~~~~-~~~---~~~l~~~ 249 (353)
T d1jl5a_ 179 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT----LPDLP-PSLEALNVRDNYLTDL-PEL---PQSLTFL 249 (353)
T ss_dssp CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS----CCSCC-TTCCEEECCSSCCSCC-CCC---CTTCCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccc----ccccc-cccccccccccccccc-ccc---ccccccc
Confidence 001123345566666666543322 11112 4455555555443221 111 1112222
Q ss_pred EEEccccc---------------CceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCccc
Q 010381 407 KLKQNSYL---------------GRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEEL 471 (512)
Q Consensus 407 ~l~~~~~~---------------~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 471 (512)
.+..+.+. ....... ...+++|++|+|++| .++.+|. .+++|+.|++++|. ++.+|.
T Consensus 250 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N~-L~~l~~-- 321 (353)
T d1jl5a_ 250 DVSENIFSGLSELPPNLYYLNASSNEIRSL-CDLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFNH-LAEVPE-- 321 (353)
T ss_dssp ECCSSCCSEESCCCTTCCEEECCSSCCSEE-CCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC--
T ss_pred ccccccccccccccchhcccccccCccccc-cccCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCCc-CCcccc--
Confidence 22111110 0001111 244678888888885 5666763 36788888888876 667775
Q ss_pred CCCCCCcEEEccCCh
Q 010381 472 WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 472 ~~l~~L~~L~l~~~~ 486 (512)
.+++|++|++++|+
T Consensus 322 -~~~~L~~L~L~~N~ 335 (353)
T d1jl5a_ 322 -LPQNLKQLHVEYNP 335 (353)
T ss_dssp -CCTTCCEEECCSSC
T ss_pred -ccCCCCEEECcCCc
Confidence 35678888888886
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.61 E-value=2.1e-15 Score=136.42 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=134.7
Q ss_pred ccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCee
Q 010381 230 LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFV 309 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 309 (512)
+..+.+|++|++.+|.|+.++ .+..+++|++|++++|.+..+++ +.++++|+.+++++|.+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~---------------- 98 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK---------------- 98 (227)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS----------------
T ss_pred HHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-cccccccccccccccccc----------------
Confidence 345566666666666666663 46666666666666666665543 566666666666655442
Q ss_pred ecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccC
Q 010381 310 SALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 310 ~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~ 389 (512)
....+..+++|+.+.++++. ... ...+...+.+..+.++++.+.... .+..+ ++|+.|++++|.+
T Consensus 99 --------~i~~l~~l~~L~~l~l~~~~--~~~--~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~-~~L~~L~l~~n~~ 163 (227)
T d1h6ua2 99 --------NVSAIAGLQSIKTLDLTSTQ--ITD--VTPLAGLSNLQVLYLDLNQITNIS--PLAGL-TNLQYLSIGNAQV 163 (227)
T ss_dssp --------CCGGGTTCTTCCEEECTTSC--CCC--CGGGTTCTTCCEEECCSSCCCCCG--GGGGC-TTCCEEECCSSCC
T ss_pred --------cccccccccccccccccccc--ccc--cchhccccchhhhhchhhhhchhh--hhccc-ccccccccccccc
Confidence 23346677888888887763 111 123556788999999887665433 45667 8999999999987
Q ss_pred CCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecC
Q 010381 390 KEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDP 460 (512)
Q Consensus 390 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~ 460 (512)
.. ...++++++|++|++++|.+.+.. . +.++++|++|++++| .++.++. ++.+++|+.|++++
T Consensus 164 ~~--~~~l~~l~~L~~L~Ls~n~l~~l~-~---l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 164 SD--LTPLANLSKLTTLKADDNKISDIS-P---LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp CC--CGGGTTCTTCCEEECCSSCCCCCG-G---GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred cc--chhhcccccceecccCCCccCCCh-h---hcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence 54 335789999999999999876532 1 578899999999996 6888874 78999999999974
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=2.9e-15 Score=132.52 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=29.8
Q ss_pred ccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCccc
Q 010381 233 LFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 233 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 292 (512)
+.++++|+++++.++.++ .+..+++|++|++++|.++.+++ ++++++|++|++++|.+
T Consensus 39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI 96 (199)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccc
Confidence 445555555555555443 34555555555555555554443 55555555555555543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=3.8e-15 Score=132.87 Aligned_cols=164 Identities=20% Similarity=0.234 Sum_probs=91.9
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCc
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~ 290 (512)
..|+.|++++|.++.++ .+..+++|++|++++|.++.++ .++.+++|++|++++|.++.+| .+..+++|+.|++++|
T Consensus 46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~ 122 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN 122 (210)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS
T ss_pred cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-cccccccccccccccc
Confidence 34555566655555443 2555566666666666655554 3455566666666666555554 3555566666665555
Q ss_pred ccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
... ....+..+++++.++++++. .. . +..+..+++|+.+++++|.+..+.
T Consensus 123 ~~~------------------------~~~~l~~l~~l~~l~~~~n~--l~-~-~~~~~~l~~L~~l~l~~n~l~~i~-- 172 (210)
T d1h6ta2 123 GIS------------------------DINGLVHLPQLESLYLGNNK--IT-D-ITVLSRLTKLDTLSLEDNQISDIV-- 172 (210)
T ss_dssp CCC------------------------CCGGGGGCTTCCEEECCSSC--CC-C-CGGGGGCTTCSEEECCSSCCCCCG--
T ss_pred ccc------------------------cccccccccccccccccccc--cc-c-cccccccccccccccccccccccc--
Confidence 442 12233444444555444441 11 1 112344566666666666555443
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEc
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQ 410 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 410 (512)
.+..+ ++|++|++++|.+++ . +.+.++++|++|+|++
T Consensus 173 ~l~~l-~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 173 PLAGL-TKLQNLYLSKNHISD-L-RALAGLKNLDVLELFS 209 (210)
T ss_dssp GGTTC-TTCCEEECCSSCCCB-C-GGGTTCTTCSEEEEEE
T ss_pred cccCC-CCCCEEECCCCCCCC-C-hhhcCCCCCCEEEccC
Confidence 34566 788888888887753 2 3577888888888863
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.56 E-value=1.2e-14 Score=129.59 Aligned_cols=163 Identities=23% Similarity=0.252 Sum_probs=102.4
Q ss_pred CCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcE
Q 010381 182 DMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQT 261 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 261 (512)
+.+++.|.+.++.+. .+..+ ..+++|++|++++|.++.++. ++.+++|++|++++|+++.+| .+..+++|+.
T Consensus 45 L~~L~~L~l~~~~i~-----~l~~l-~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~ 116 (210)
T d1h6ta2 45 LNSIDQIIANNSDIK-----SVQGI-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKS 116 (210)
T ss_dssp HHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCE
T ss_pred hcCccEEECcCCCCC-----CchhH-hhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-cccccccccc
Confidence 456677777776654 33445 677788888888888776653 677788888888888887776 5777888888
Q ss_pred EecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhh
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYY 340 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~ 340 (512)
|++.+|.+..++ .+..+++++.+++++|.+.. +..+.++++|+.+++++ .+.. ...+..+++|++|++++|.
T Consensus 117 L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~--- 189 (210)
T d1h6ta2 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNH--- 189 (210)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSC---
T ss_pred cccccccccccc-cccccccccccccccccccc--cccccccccccccccccccccc-cccccCCCCCCEEECCCCC---
Confidence 888888766654 46777888888887777642 33345555666666554 2111 2235555556666655551
Q ss_pred hhhHHHhccCCCCCcEEEec
Q 010381 341 QSRVSKSLCKLQKLEWLKLV 360 (512)
Q Consensus 341 ~~~l~~~l~~l~~L~~L~l~ 360 (512)
...++ .+.++++|+.|+++
T Consensus 190 i~~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 190 ISDLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp CCBCG-GGTTCTTCSEEEEE
T ss_pred CCCCh-hhcCCCCCCEEEcc
Confidence 12222 34445555555544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=2.7e-14 Score=126.16 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=51.6
Q ss_pred CCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcE
Q 010381 182 DMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQT 261 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 261 (512)
+++++.|.+.++.+. .++.+ ..+++|++|++++|.++.++. ++++++|++|++++|.+..++ .++++++|+.
T Consensus 39 l~~l~~L~l~~~~i~-----~l~~l-~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~ 110 (199)
T d2omxa2 39 LDQVTTLQADRLGIK-----SIDGV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTG 110 (199)
T ss_dssp HTTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred hcCCCEEECCCCCCC-----Ccccc-ccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccc
Confidence 345555555555443 22333 445555555555555554433 555555555555555555444 2455555555
Q ss_pred EecCCccccccchhhhccccCceeecCCccc
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 292 (512)
|+++++....++ .+..+++|+.|++++|.+
T Consensus 111 L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l 140 (199)
T d2omxa2 111 LTLFNNQITDID-PLKNLTNLNRLELSSNTI 140 (199)
T ss_dssp EECCSSCCCCCG-GGTTCTTCSEEECCSSCC
T ss_pred cccccccccccc-ccchhhhhHHhhhhhhhh
Confidence 555555444332 244555555555555544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.8e-16 Score=148.66 Aligned_cols=218 Identities=19% Similarity=0.212 Sum_probs=131.2
Q ss_pred eEEEEecCCcCCccCccccCccccCeeeecCCCCc--ccChhhhcCcCCcEEecCCcccc-ccchhhhccccCceeecCC
Q 010381 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLK--CLPSQLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 213 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~ 289 (512)
+..+.++...+...........+|++|+++++.++ .++..+..+++|++|++++|.+. ..+..+.++++|++|++++
T Consensus 25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~ 104 (284)
T d2astb2 25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104 (284)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence 34455555544432233345567888888887766 35555677888888888888653 3445677778888888877
Q ss_pred cccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhcc-CCCCCcEEEeccC--CCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLC-KLQKLEWLKLVNE--SKPS 366 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~l~~L~~L~l~~~--~~p~ 366 (512)
|..... .........+++|++|++++|.......+...+. .+++|+.|++++. .+..
T Consensus 105 c~~itd--------------------~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~ 164 (284)
T d2astb2 105 CSGFSE--------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164 (284)
T ss_dssp CBSCCH--------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred cccccc--------------------cccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccc
Confidence 642110 1222334568899999999874222333433333 3468888888752 2210
Q ss_pred --CcccCcCCCCCCccEEEEeccc-CCCCCCCCCCCCcccceeEEEccc-ccCceeeeeCCCCCccccEEEecCCCCcce
Q 010381 367 --RMVLSEYQFPPSLTHLSLSNTE-LKEDPMPTLEKLPYVQVLKLKQNS-YLGRKLACVGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 367 --L~~l~~~~lp~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
+.. ....+ ++|++|++++|. +++..+..++.+++|++|++++|. +++..+.. ++.+|+|+.|++++|-.-..
T Consensus 165 ~~l~~-l~~~~-~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~--L~~~~~L~~L~l~~~~~d~~ 240 (284)
T d2astb2 165 SDLST-LVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFGIVPDGT 240 (284)
T ss_dssp HHHHH-HHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTSSCTTC
T ss_pred ccccc-ccccc-ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHH--HhcCCCCCEEeeeCCCCHHH
Confidence 000 22456 788888888764 555566667778888888888754 44433332 45678888888887632223
Q ss_pred eeeCCCCccccc
Q 010381 443 WTMGAGAMPKLE 454 (512)
Q Consensus 443 l~~~~~~l~~L~ 454 (512)
+......+|+|+
T Consensus 241 l~~l~~~lp~L~ 252 (284)
T d2astb2 241 LQLLKEALPHLQ 252 (284)
T ss_dssp HHHHHHHSTTSE
T ss_pred HHHHHHhCcccc
Confidence 333223455555
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.2e-15 Score=143.00 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=92.0
Q ss_pred CCCeeEEEEecCCcCC--ccCccccCccccCeeeecCCCCc-ccChhhhcCcCCcEEecCCc-cccc--cchhhhccccC
Q 010381 209 KFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSS-YIDQ--SPEDIWMMQKL 282 (512)
Q Consensus 209 ~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~-~~~~--lp~~i~~l~~L 282 (512)
....|++||+++|.++ .++..+..+++|++|+++++.+. ..+..++.+++|++|++++| .++. +..-..++++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 3445666666666554 33444556666666666666655 44455666666666666665 4432 22223456666
Q ss_pred ceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcC-CCCCCCeEEEeccch-hhhhhHHHhccCCCCCcEEEec
Q 010381 283 MHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILG-RLPNIQTLRISGDLS-YYQSRVSKSLCKLQKLEWLKLV 360 (512)
Q Consensus 283 ~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~-~l~~L~~L~l~~~~~-~~~~~l~~~l~~l~~L~~L~l~ 360 (512)
++|++++|..... ......+. ..++|+.|+++++.. .....+.....++++|+.|+++
T Consensus 124 ~~L~ls~c~~~~~--------------------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~ 183 (284)
T d2astb2 124 DELNLSWCFDFTE--------------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183 (284)
T ss_dssp CEEECCCCTTCCH--------------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred ccccccccccccc--------------------ccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence 6666665532100 11111122 234566666665421 1122333444556666666666
Q ss_pred cCC-CC--CCcccCcCCCCCCccEEEEecc-cCCCCCCCCCCCCcccceeEEEcc
Q 010381 361 NES-KP--SRMVLSEYQFPPSLTHLSLSNT-ELKEDPMPTLEKLPYVQVLKLKQN 411 (512)
Q Consensus 361 ~~~-~p--~L~~l~~~~lp~~L~~L~L~~~-~~~~~~~~~l~~l~~L~~L~l~~~ 411 (512)
++. +. .+. .+..+ ++|++|++++| .+++..+..++++++|+.|++.++
T Consensus 184 ~~~~itd~~~~--~l~~~-~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 184 DSVMLKNDCFQ--EFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TCTTCCGGGGG--GGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccCCCchhhh--hhccc-CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 532 21 111 34455 66666666665 344344444556666666666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1e-13 Score=126.35 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=56.4
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccc-cc-hhhhccccCceeecCCc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQ-SP-EDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~-lp-~~i~~l~~L~~L~l~~~ 290 (512)
++++.++..++.+|+.+. .++++|++++|.|+.+|. .+.++++|++|++++|.+.. ++ ..+..+++++++.+..+
T Consensus 11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 456666666777776543 467777777777776665 35667777777777775533 33 23556677777766443
Q ss_pred -ccCCCCCCCCCCCCCCCeeecC
Q 010381 291 -TLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 291 -~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
.+....+..+.++++|+.+++.
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~ 111 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLIS 111 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEE
T ss_pred ccccccccccccccccccccccc
Confidence 3332333334444444444444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=6.1e-14 Score=127.92 Aligned_cols=214 Identities=16% Similarity=0.097 Sum_probs=117.3
Q ss_pred cCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcccCCCCC-CCCCCCCCCCeeecCC
Q 010381 236 LKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPT-NYSSSLKNLIFVSALH 313 (512)
Q Consensus 236 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l~l~~ 313 (512)
.+.++.++..++.+|..+. .++++|++++|.++.+|.. +.++++|++|++++|.+...++ ..+.+++.++.+.+..
T Consensus 10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 3678888888999997663 5899999999999999864 7899999999999998865444 3456666666665432
Q ss_pred --CC-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc-CcCCCCCCccEEEEecccC
Q 010381 314 --PI-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL-SEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 314 --~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l-~~~~lp~~L~~L~L~~~~~ 389 (512)
.+ ...+..+..+++|+.+++.++ .+...... ....+ ..+..+...++.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~--------------------------~l~~~~~~~~~~~l-~~l~~~~~~n~~l 140 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNT--------------------------GIKHLPDVHKIHSL-QKVLLDIQDNINI 140 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESC--------------------------CCCSCCCCTTTCBS-SCEEEEEESCTTC
T ss_pred cccccccccccccccccccccccchh--------------------------hhcccccccccccc-ccccccccccccc
Confidence 11 222233455555555555554 22111100 11222 3333333333343
Q ss_pred CCCCCCCCCCCc-ccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeee-CCCCccccceeeecCCcccCCC
Q 010381 390 KEDPMPTLEKLP-YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTM-GAGAMPKLESLIVDPCAYLRKL 467 (512)
Q Consensus 390 ~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l 467 (512)
.......+..++ .++.|++.+|.+..... . ....++++.+....++.++.+|. .+.++++|+.|++++|+ ++.+
T Consensus 141 ~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~-~--~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l 216 (242)
T d1xwdc1 141 HTIERNSFVGLSFESVILWLNKNGIQEIHN-C--AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSL 216 (242)
T ss_dssp CEECTTSSTTSBSSCEEEECCSSCCCEECT-T--TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCC
T ss_pred ccccccccccccccceeeeccccccccccc-c--cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCcc
Confidence 333333344333 45556665555432211 1 12234444444444455555553 24556666666666665 4444
Q ss_pred Cc-ccCCCCCCcEEEc
Q 010381 468 PE-ELWCIQSLRKLDL 482 (512)
Q Consensus 468 p~-~~~~l~~L~~L~l 482 (512)
|. .+.++++|+.+++
T Consensus 217 ~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 217 PSYGLENLKKLRARST 232 (242)
T ss_dssp CSSSCTTCCEEESSSE
T ss_pred CHHHHcCCcccccCcC
Confidence 43 2344444444433
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=7.7e-16 Score=154.25 Aligned_cols=116 Identities=17% Similarity=0.084 Sum_probs=66.8
Q ss_pred CCccEEEEecccCCCCCCCCC----CCCcccceeEEEcccccCceeeee--C-CCCCccccEEEecCCCCcc-----eee
Q 010381 377 PSLTHLSLSNTELKEDPMPTL----EKLPYVQVLKLKQNSYLGRKLACV--G-SGGFPELKVLHLKSMYWLD-----EWT 444 (512)
Q Consensus 377 ~~L~~L~L~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~--~-~~~~~~L~~L~L~~~~~l~-----~l~ 444 (512)
..|+.+++++|.+.......+ ...++|++|+|++|.+.+...... . ....+.|++|+|++|. ++ .+.
T Consensus 312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~ 390 (460)
T d1z7xw1 312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA 390 (460)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHH
Confidence 567777777776654332222 334578888888877654321110 0 1345678888888864 43 233
Q ss_pred eCCCCccccceeeecCCcccCC----CCcccC-CCCCCcEEEccCCh--HHHHHHh
Q 010381 445 MGAGAMPKLESLIVDPCAYLRK----LPEELW-CIQSLRKLDLHWPQ--TELRQRL 493 (512)
Q Consensus 445 ~~~~~l~~L~~L~l~~c~~l~~----lp~~~~-~l~~L~~L~l~~~~--~~~~~~~ 493 (512)
..+..+++|++|++++|+.... +...+. +..+|+.|++.++. .+..+.+
T Consensus 391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l 446 (460)
T d1z7xw1 391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446 (460)
T ss_dssp HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence 3345568888888888864221 222232 34468888888875 3444443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=1.2e-13 Score=111.35 Aligned_cols=78 Identities=28% Similarity=0.367 Sum_probs=64.4
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccC
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 293 (512)
|+|++++|.++.++. ++.+++|++|++++|.++.+|..++.+++|++|++++|.++.+|. +.++++|++|++++|.+.
T Consensus 1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~ 78 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ 78 (124)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccC
Confidence 578888888887764 788888888888888888888888888888888888888888764 788888888888888775
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.1e-13 Score=115.65 Aligned_cols=85 Identities=18% Similarity=0.090 Sum_probs=66.4
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhh-hccccCceee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDI-WMMQKLMHLN 286 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~ 286 (512)
.++..+|.|+|++|.++.++..+..+++|++|++++|.|+.++ .+..+++|++|++++|.+..+|..+ ..+++|++|+
T Consensus 15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 93 (162)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence 5667788888888888877766677788888888888888775 5777888888888888887777654 5688888888
Q ss_pred cCCcccC
Q 010381 287 FGSITLP 293 (512)
Q Consensus 287 l~~~~~~ 293 (512)
+++|.+.
T Consensus 94 L~~N~i~ 100 (162)
T d1a9na_ 94 LTNNSLV 100 (162)
T ss_dssp CCSCCCC
T ss_pred ecccccc
Confidence 8888764
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=4.1e-13 Score=108.25 Aligned_cols=101 Identities=21% Similarity=0.251 Sum_probs=90.1
Q ss_pred eEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecC
Q 010381 186 QSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMP 265 (512)
Q Consensus 186 r~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~ 265 (512)
|.|+++++.+. .++.+ ..+++|++|++++|.++.+|+.++.+++|++|++++|.++.+| .++.+++|++|+++
T Consensus 1 R~L~Ls~n~l~-----~l~~l-~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~ 73 (124)
T d1dcea3 1 RVLHLAHKDLT-----VLCHL-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 73 (124)
T ss_dssp SEEECTTSCCS-----SCCCG-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CEEEcCCCCCC-----CCccc-ccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECC
Confidence 57888888876 44555 8889999999999999999999999999999999999999987 58999999999999
Q ss_pred Cccccccc--hhhhccccCceeecCCcccC
Q 010381 266 SSYIDQSP--EDIWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 266 ~~~~~~lp--~~i~~l~~L~~L~l~~~~~~ 293 (512)
+|.+..+| ..+..+++|++|++++|.+.
T Consensus 74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 99998876 45889999999999999875
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=6.1e-13 Score=112.70 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=92.6
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhh-hcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQL-CTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L 259 (512)
++.++|.|++.+|.+. .++.++..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|..+ ..+++|
T Consensus 16 n~~~lr~L~L~~n~I~-----~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp CTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCcCcEEECCCCCCC-----ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence 6778999999999887 44455578899999999999999884 5889999999999999999887664 679999
Q ss_pred cEEecCCccccccch--hhhccccCceeecCCcccC
Q 010381 260 QTLQMPSSYIDQSPE--DIWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 260 ~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~ 293 (512)
++|++++|.+..++. .+..+++|++|++++|.+.
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ccceeccccccccccccccccccccchhhcCCCccc
Confidence 999999999888764 5788999999999999874
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2e-13 Score=136.24 Aligned_cols=299 Identities=17% Similarity=0.111 Sum_probs=181.1
Q ss_pred CCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCcc-----cChh
Q 010381 183 MYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLKC-----LPSQ 252 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~ 252 (512)
.+|+.|+++++.+.. ..+..++..++++++|+|++|.++ .+...+..+++|++|+|++|.|+. +...
T Consensus 2 ~~l~~ld~~~~~i~~---~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~ 78 (460)
T d1z7xw1 2 LDIQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 78 (460)
T ss_dssp EEEEEEEEESCCCCH---HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CCCCEEEeeCCcCCh---HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence 479999999998873 344555577899999999999987 445667889999999999999872 2222
Q ss_pred hh-cCcCCcEEecCCccccc-----cchhhhccccCceeecCCcccCCCC----CC------------------------
Q 010381 253 LC-TLLNLQTLQMPSSYIDQ-----SPEDIWMMQKLMHLNFGSITLPAPP----TN------------------------ 298 (512)
Q Consensus 253 ~~-~l~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~----p~------------------------ 298 (512)
+. ...+|++|++++|.++. ++..+..+++|++|++++|.+.... +.
T Consensus 79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (460)
T d1z7xw1 79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 158 (460)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence 22 23579999999998754 3456778999999999998764200 00
Q ss_pred -----CCCCCCCCCeeecCCCC------------------------------c-----cCchhcCCCCCCCeEEEeccch
Q 010381 299 -----YSSSLKNLIFVSALHPI------------------------------S-----CTPDILGRLPNIQTLRISGDLS 338 (512)
Q Consensus 299 -----~~~~l~~L~~l~l~~~~------------------------------~-----~~~~~l~~l~~L~~L~l~~~~~ 338 (512)
.+.....++.+.+.... . .....+...+.++.+.+.++..
T Consensus 159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~ 238 (460)
T d1z7xw1 159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238 (460)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence 00011222333322100 0 0001122334555555554420
Q ss_pred ---hhhhhHHHhccCCCCCcEEEeccCCCCCCcc--c--CcCCCCCCccEEEEecccCCCCCCCCC-----CCCccccee
Q 010381 339 ---YYQSRVSKSLCKLQKLEWLKLVNESKPSRMV--L--SEYQFPPSLTHLSLSNTELKEDPMPTL-----EKLPYVQVL 406 (512)
Q Consensus 339 ---~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~--l--~~~~lp~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L 406 (512)
...............++.+++++|.+..... . .+... +.++.+++++|.+.......+ .....|+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~-~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l 317 (460)
T d1z7xw1 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 317 (460)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cccccchhhccccccccccccccccccccccccccccccccccc-ccccccccccccccccccchhhccccccccccccc
Confidence 0111223333445566666666654421000 0 22344 777888887776543211111 234578899
Q ss_pred EEEcccccCceeeee--CCCCCccccEEEecCCCCcc-----eeeeCC-CCccccceeeecCCcccC----CCCcccCCC
Q 010381 407 KLKQNSYLGRKLACV--GSGGFPELKVLHLKSMYWLD-----EWTMGA-GAMPKLESLIVDPCAYLR----KLPEELWCI 474 (512)
Q Consensus 407 ~l~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~l~-----~l~~~~-~~l~~L~~L~l~~c~~l~----~lp~~~~~l 474 (512)
.+++|.+........ .....++|++|+|+++ .+. .++..+ ...+.|+.|++++|.... .++..+..+
T Consensus 318 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 396 (460)
T d1z7xw1 318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 396 (460)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred cccccchhhhhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcC
Confidence 998887765432211 0234568999999996 443 233323 246789999999997432 345566778
Q ss_pred CCCcEEEccCCh
Q 010381 475 QSLRKLDLHWPQ 486 (512)
Q Consensus 475 ~~L~~L~l~~~~ 486 (512)
++|++|+|++|+
T Consensus 397 ~~L~~L~Ls~N~ 408 (460)
T d1z7xw1 397 HSLRELDLSNNC 408 (460)
T ss_dssp CCCCEEECCSSS
T ss_pred CCCCEEECCCCc
Confidence 999999999997
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.16 E-value=5.7e-12 Score=120.99 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=50.7
Q ss_pred hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCcc-----------cChhhhcCcCCcEEecCCc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLKC-----------LPSQLCTLLNLQTLQMPSS 267 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~-----------lp~~~~~l~~L~~L~L~~~ 267 (512)
..+ .....|+.|+|++|.+. .+-..+...++|+.|+++++.... +...+..+++|++|+|++|
T Consensus 25 ~~L-~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 25 AVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp HHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHH-hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 444 66777777777777664 233445666777777776653321 1222344566777777666
Q ss_pred cccc-----cchhhhccccCceeecCCccc
Q 010381 268 YIDQ-----SPEDIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 268 ~~~~-----lp~~i~~l~~L~~L~l~~~~~ 292 (512)
.++. +...+..+++|++|++++|.+
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l 133 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 133 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred ccccccccchhhhhcccccchheecccccc
Confidence 5433 233344566666776666554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.15 E-value=1.1e-12 Score=115.21 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=75.4
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+|.....+++|++|++++|.++.++ .+..+++|++|++
T Consensus 45 ~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L 122 (198)
T d1m9la_ 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 67777888888877777664 477777888888888877777766666667888888877777664 4777778888888
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEecc
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~ 336 (512)
++|.+.. ......+..+++|+.|++++|
T Consensus 123 ~~N~i~~---------------------~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 123 SNNKITN---------------------WGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SEEECCC---------------------HHHHHHHTTTTTCSEEEECSS
T ss_pred ccchhcc---------------------ccccccccCCCccceeecCCC
Confidence 7777631 111235667777777777776
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.14 E-value=8e-11 Score=102.65 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=69.8
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcc-c-ChhhhcCcCCcEEecCCccccccc-hhhhccccCceeecCCc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKC-L-PSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~-l-p~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~ 290 (512)
++++.+++.++.+|..+. .++++|+|++|.|+. + +..++.+++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 356666666666666553 467777777777652 3 234566777777777777665544 34556677777777777
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC-CCccC-chhcCCCCCCCeEEEecc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH-PISCT-PDILGRLPNIQTLRISGD 336 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~-~~~~~-~~~l~~l~~L~~L~l~~~ 336 (512)
++....|..+.++++|+.|++++ .+..+ +..+..+++|++|+++++
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N 136 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence 66544444555666666666654 22222 223445555555555544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.13 E-value=9.7e-11 Score=102.11 Aligned_cols=125 Identities=19% Similarity=0.183 Sum_probs=89.0
Q ss_pred cEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC-CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEE
Q 010381 355 EWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE-DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLH 433 (512)
Q Consensus 355 ~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 433 (512)
+.++.+++.+.. .-..+|+++++|+|++|.++. .....|+++++|+.|++++|.+....... +..+++|++|+
T Consensus 11 ~~v~Cs~~~L~~----iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~--~~~~~~L~~L~ 84 (192)
T d1w8aa_ 11 TTVDCTGRGLKE----IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA--FEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSS----CCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT--TTTCTTCCEEE
T ss_pred CEEEEeCCCcCc----cCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccc--cccccccceee
Confidence 456666654432 112455788888888888865 44556788888888888888876554333 67788888888
Q ss_pred ecCCCCcceee-eCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 434 LKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 434 L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+++ +.++.++ ..+.++++|+.|++++|....-.|..+..+++|+++++++|+
T Consensus 85 Ls~-N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 85 LGE-NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCS-CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ecc-ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence 888 4677775 456788888899998887433334457888889999988875
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.11 E-value=2.2e-12 Score=123.99 Aligned_cols=242 Identities=12% Similarity=0.090 Sum_probs=155.5
Q ss_pred ccCccccCccccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCcccccc----c-------hhhhccccCceeecC
Q 010381 225 QFPPGLENLFLLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQS----P-------EDIWMMQKLMHLNFG 288 (512)
Q Consensus 225 ~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~l----p-------~~i~~l~~L~~L~l~ 288 (512)
.+...+.+...|+.|+|++|.+. .+...+...++|+.|+++++..... | ..+..+++|++|+++
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 45566777888999999998775 3444566778999999987743221 2 334567889999998
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccc--hhhhhhH---------HHhccCCCCCcEE
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDL--SYYQSRV---------SKSLCKLQKLEWL 357 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l---------~~~l~~l~~L~~L 357 (512)
+|.+..... ..+...+...++|++|++++|. ......+ .......+.|+.+
T Consensus 102 ~n~i~~~~~------------------~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l 163 (344)
T d2ca6a1 102 DNAFGPTAQ------------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 163 (344)
T ss_dssp SCCCCTTTH------------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred ccccccccc------------------cchhhhhcccccchheecccccccccccccccccccccccccccccCccccee
Confidence 887643110 2234445567788888888774 0001111 1123456788899
Q ss_pred EeccCCCCC--Cccc--CcCCCCCCccEEEEecccCCCC-----CCCCCCCCcccceeEEEcccccCcee---eeeCCCC
Q 010381 358 KLVNESKPS--RMVL--SEYQFPPSLTHLSLSNTELKED-----PMPTLEKLPYVQVLKLKQNSYLGRKL---ACVGSGG 425 (512)
Q Consensus 358 ~l~~~~~p~--L~~l--~~~~lp~~L~~L~L~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~ 425 (512)
.+++|.+.. ...+ .+..+ +.|++|++++|.+... ....+..+++|+.|++++|.+..... ... +..
T Consensus 164 ~l~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~-l~~ 241 (344)
T d2ca6a1 164 ICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKS 241 (344)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGG
T ss_pred ecccccccccccccccchhhhh-hhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc-ccc
Confidence 988876642 1111 23456 7899999999887542 23456778899999999888754321 111 466
Q ss_pred CccccEEEecCCCCcce----eeeCC--CCccccceeeecCCcccC----CCCcccC-CCCCCcEEEccCCh
Q 010381 426 FPELKVLHLKSMYWLDE----WTMGA--GAMPKLESLIVDPCAYLR----KLPEELW-CIQSLRKLDLHWPQ 486 (512)
Q Consensus 426 ~~~L~~L~L~~~~~l~~----l~~~~--~~l~~L~~L~l~~c~~l~----~lp~~~~-~l~~L~~L~l~~~~ 486 (512)
+++|++|+|++|..-.. +...+ ...+.|++|++++|.... .+...+. ++++|+.|++++|.
T Consensus 242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 78999999999753221 21112 235789999999987422 2333342 57899999999876
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.06 E-value=1.1e-12 Score=115.14 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=93.2
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
.+++|+.|.+++|.+. .++.+ ..+++|++|++++|.++.+|.....+++|++|++++|.++.++ .+..+++|+
T Consensus 46 ~L~~L~~L~Ls~n~I~-----~i~~l-~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~ 118 (198)
T d1m9la_ 46 TLKACKHLALSTNNIE-----KISSL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HTTTCCEEECSEEEES-----CCCCH-HHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSS
T ss_pred cccccceeECcccCCC-----Ccccc-cCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccc
Confidence 7899999999998876 44555 7889999999999999988876677789999999999999875 588899999
Q ss_pred EEecCCccccccc--hhhhccccCceeecCCcccCC
Q 010381 261 TLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 261 ~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~ 294 (512)
+|++++|.++.++ ..+..+++|+.|++++|.+..
T Consensus 119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred ccccccchhccccccccccCCCccceeecCCCcccc
Confidence 9999999998876 358899999999999998753
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.92 E-value=3.4e-11 Score=111.25 Aligned_cols=62 Identities=15% Similarity=0.019 Sum_probs=54.0
Q ss_pred CCCCCCchhHHHHhhhcccCCCHHHHHHHHHHcCCCCCccccCCCCHHHHHhhhcccCCCCcchhhHhhh
Q 010381 1 MENGEKIRLDSVLIGGPLIRLKHEAWQFFILHYGSMPLENYLQGETIPTILSRICSVLELPFHLKICCIY 70 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~ 70 (512)
|++|+|+||||+++|+.|+..+.++|.+..+.+..... .++..+|+ +||++||+++|.||.+
T Consensus 215 v~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~------~~v~~il~--~sY~~L~~~lk~c~~~ 276 (277)
T d2a5yb3 215 IELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL------VGVECITP--YSYKSLAMALQRCVEV 276 (277)
T ss_dssp HHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS------STTCCCSS--SSSSSHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcH------HHHHHHHH--HHHhcccHHHHHHHHh
Confidence 47899999999999999994458999998888765433 78999999 9999999999999976
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=5.7e-09 Score=87.08 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=40.3
Q ss_pred cCCCeeEEEEecCCc-CCccC-ccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccchhhhccccCce
Q 010381 208 KKFKYLRVLDLGSAV-LDQFP-PGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMH 284 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~-l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~ 284 (512)
..+++|+.|+++++. ++.++ ..|..+++|+.|++++|+|+.++ ..+..+++|++|+|++|.++.+|..+....+|++
T Consensus 28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~ 107 (156)
T d2ifga3 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107 (156)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccc
Confidence 444455555554332 44333 23444555555555555555442 2244455555555555555555544443444555
Q ss_pred eecCCccc
Q 010381 285 LNFGSITL 292 (512)
Q Consensus 285 L~l~~~~~ 292 (512)
|++++|.+
T Consensus 108 L~L~~Np~ 115 (156)
T d2ifga3 108 LVLSGNPL 115 (156)
T ss_dssp EECCSSCC
T ss_pred cccCCCcc
Confidence 55555443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=2.8e-08 Score=82.74 Aligned_cols=102 Identities=16% Similarity=-0.020 Sum_probs=79.5
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCC-CCcccCh-hhhcCcCCcEEecCCccccccc-hhhhccccCceeec
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIP-SLKCLPS-QLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNF 287 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l 287 (512)
.....++.+++.+...|..+..+++|++|+++++ .++.++. .+.++++|+.|++++|.++.++ ..+..+++|++|++
T Consensus 8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 3445678888888888888999999999999766 5887764 4888999999999999999885 45889999999999
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
++|.+. .+|.+.....+|+.|++++
T Consensus 88 s~N~l~-~l~~~~~~~~~l~~L~L~~ 112 (156)
T d2ifga3 88 SFNALE-SLSWKTVQGLSLQELVLSG 112 (156)
T ss_dssp CSSCCS-CCCSTTTCSCCCCEEECCS
T ss_pred cCCCCc-ccChhhhccccccccccCC
Confidence 999986 5555443333455555553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.3e-07 Score=79.12 Aligned_cols=62 Identities=21% Similarity=0.150 Sum_probs=30.2
Q ss_pred cCCCeeEEEEecCCcCCccC---ccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccc
Q 010381 208 KKFKYLRVLDLGSAVLDQFP---PGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYI 269 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp---~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~ 269 (512)
..++.|++|++++|.++.++ ..+..+++|++|++++|.|+.++.. .....+|+.|++.+|.+
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl 127 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence 44555555566555555332 2344455555555555555544431 11223455555555544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=2e-06 Score=71.63 Aligned_cols=85 Identities=21% Similarity=0.126 Sum_probs=64.5
Q ss_pred cCccccCccccCeeeecCCCCcccC---hhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCC--
Q 010381 226 FPPGLENLFLLKYLKLNIPSLKCLP---SQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNY-- 299 (512)
Q Consensus 226 lp~~l~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-- 299 (512)
++.....+++|++|++++|+|+.++ ..+..+++|+.|++++|.++.+++ ...+..+|+.|++++|.+.......
T Consensus 57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~ 136 (162)
T d1koha1 57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136 (162)
T ss_dssp HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence 3334457899999999999998654 457789999999999999998875 2335567999999999986543321
Q ss_pred -----CCCCCCCCeee
Q 010381 300 -----SSSLKNLIFVS 310 (512)
Q Consensus 300 -----~~~l~~L~~l~ 310 (512)
+..+++|+.||
T Consensus 137 y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 137 YISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHTTSTTCCEET
T ss_pred HHHHHHHHCCCCCEEC
Confidence 45677777776
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.77 E-value=1.4e-05 Score=66.75 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=60.0
Q ss_pred CCCCeeEEEEecC-Ccchhhhcch-hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCcc-----
Q 010381 181 SDMYLQSFLNHSS-ESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLKC----- 248 (512)
Q Consensus 181 ~~~~Lr~L~l~~~-~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~----- 248 (512)
+.++|+.|.++++ .+.......+ ..+ ...+.|+.|++++|.+. .+.+.+...+.|++|++++|.++.
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L-~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHH-hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 3466777777653 2332112233 344 66677777777777665 222344455667777777776651
Q ss_pred cChhhhcCcCCcEEecCCcccccc--------chhhhccccCceeecCCc
Q 010381 249 LPSQLCTLLNLQTLQMPSSYIDQS--------PEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 249 lp~~~~~l~~L~~L~L~~~~~~~l--------p~~i~~l~~L~~L~l~~~ 290 (512)
+-..+...+.|++|+++++.+..+ ...+...+.|+.|+++.+
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 233344556677777766643322 233445566666666543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.39 E-value=8.8e-05 Score=61.53 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=62.7
Q ss_pred CCCCeeEEEEecC-Ccchhhhcch-hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCc-----c
Q 010381 181 SDMYLQSFLNHSS-ESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLK-----C 248 (512)
Q Consensus 181 ~~~~Lr~L~l~~~-~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~ 248 (512)
+.++|+.|.+.+. .+....-..+ ..+ ...++|+.|++++|.++ .+-..+...+.++.++++++.+. .
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al-~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHH-hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 4566777777653 3332222233 444 66777777777777765 23344555667777777777664 2
Q ss_pred cChhhhcCcCCcEEecCCc--ccc-----ccchhhhccccCceeecCCc
Q 010381 249 LPSQLCTLLNLQTLQMPSS--YID-----QSPEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 249 lp~~~~~l~~L~~L~L~~~--~~~-----~lp~~i~~l~~L~~L~l~~~ 290 (512)
+...+...++|+.++|..+ .++ .+...+.+.++|++|+++.+
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 3344556677776555433 442 23344556777777766544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.37 E-value=7.2e-05 Score=62.15 Aligned_cols=89 Identities=10% Similarity=0.112 Sum_probs=58.2
Q ss_pred hHHhcCCCeeEEEEecCC-cCC-----ccCccccCccccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCccccc-
Q 010381 204 ENFCKKFKYLRVLDLGSA-VLD-----QFPPGLENLFLLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQ- 271 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~-~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~- 271 (512)
..+..+.+.|+.|+|+++ .++ .+-..+...++|++|++++|.+. .+...+...+.|++|++++|.++.
T Consensus 8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~ 87 (167)
T d1pgva_ 8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 87 (167)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence 555567788999999874 355 23345667778888888888776 223345556778888888776643
Q ss_pred ----cchhhhccccCceeecCCccc
Q 010381 272 ----SPEDIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 272 ----lp~~i~~l~~L~~L~l~~~~~ 292 (512)
+-..+...+.|++|++++|..
T Consensus 88 g~~~l~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 88 LLARLLRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred HHHHHHHHHHhCCcCCEEECCCCcC
Confidence 223455566677777766643
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.16 E-value=0.00014 Score=60.18 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=47.1
Q ss_pred hHHhcCCCeeEEEEecCC-cCC-----ccCccccCccccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCccccc-
Q 010381 204 ENFCKKFKYLRVLDLGSA-VLD-----QFPPGLENLFLLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQ- 271 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~-~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~- 271 (512)
..+..+.+.|+.|+++++ .++ .+-..+...++|+.|++++|.++ .+-..+...+.++.+++++|.++.
T Consensus 10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~ 89 (166)
T d1io0a_ 10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 89 (166)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence 445466777777877763 354 23344556667777777777665 222334455666666666664421
Q ss_pred ----cchhhhccccCceeec
Q 010381 272 ----SPEDIWMMQKLMHLNF 287 (512)
Q Consensus 272 ----lp~~i~~l~~L~~L~l 287 (512)
+...+...++|+.+++
T Consensus 90 g~~~l~~~l~~~~~L~~l~L 109 (166)
T d1io0a_ 90 GILALVEALQSNTSLIELRI 109 (166)
T ss_dssp HHHHHHHGGGGCSSCCEEEC
T ss_pred hHHHHHHHHHhCccccEEee
Confidence 2233445555555444
|