Citrus Sinensis ID: 010382

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
MPPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPKLVPGTE
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHcccccccccccHHHHHHHHHcccccccHHcHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHHEEHHHEEccccEEHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHccccEEEEHEEEcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEcccc
mppqqheqeqdhllplladdreeraydpteKVVVIGlddgdldnlstappfswkklwlftgpgflmsiafldpgnlegdlqsgaIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILsngilplwsGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWmfgetkpsgselLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALvqsrdidnnkkGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKgfygteqanniglvnagqylqekyggglfpILYIWGIGllaagqsstitgtyAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSqehimgtfkigPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGItfsswrahpklvpgte
mppqqheqeqdhLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFsswrahpklvpgte
MPPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIglddgdldNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPKLVPGTE
****************************TEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAH********
****************************************************WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALV***************ALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWR**********
**********DHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPKLVPGTE
************************************************PPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFS*************
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MPPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPKLVPGTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query512 2.2.26 [Sep-21-2011]
Q9SNV9509 Metal transporter Nramp3 yes no 0.906 0.911 0.826 0.0
Q9C6B2530 Metal transporter Nramp2 no no 0.929 0.898 0.790 0.0
Q9FN18512 Metal transporter Nramp4 no no 0.962 0.962 0.749 0.0
Q2QN30541 Metal transporter Nramp6 yes no 0.919 0.870 0.762 0.0
Q10Q65524 Metal transporter Nramp2 no no 0.941 0.919 0.720 0.0
Q9SN36530 Metal transporter Nramp5 no no 0.958 0.926 0.682 0.0
Q869V1533 Metal transporter nramp1 yes no 0.732 0.703 0.566 1e-126
P49283596 Protein Malvolio OS=Droso yes no 0.923 0.793 0.483 1e-122
P51027555 Natural resistance-associ yes no 0.865 0.798 0.491 1e-116
P41251548 Natural resistance-associ yes no 0.917 0.857 0.467 1e-116
>sp|Q9SNV9|NRAM3_ARATH Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2 Back     alignment and function desciption
 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/467 (82%), Positives = 434/467 (92%), Gaps = 3/467 (0%)

Query: 38  DDGDLDN---LSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLL 94
           ++ DL++      APPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQ+GA+AGYSLLWLL
Sbjct: 35  EEDDLEHGVGCGGAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAVAGYSLLWLL 94

Query: 95  LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGS 154
           +WATA+GLLVQLLSARLGVATGRHLAELCR+EYP+WARMVLWVMAELALIGSDIQEVIGS
Sbjct: 95  MWATAMGLLVQLLSARLGVATGRHLAELCRDEYPTWARMVLWVMAELALIGSDIQEVIGS 154

Query: 155 AIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGE 214
           AIAIKILSNGILPLW+GVVITALDCF+FLFLENYG+RKLEAVFAVLIATM +SFAWMFG+
Sbjct: 155 AIAIKILSNGILPLWAGVVITALDCFVFLFLENYGIRKLEAVFAVLIATMGVSFAWMFGQ 214

Query: 215 TKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQE 274
            KPSGSELLIGILVPKLSS+TIQ+AVGVVGCIIMPHNVFLHSALVQSR++D  +K RVQE
Sbjct: 215 AKPSGSELLIGILVPKLSSRTIQKAVGVVGCIIMPHNVFLHSALVQSREVDKRQKYRVQE 274

Query: 275 ALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPI 334
           AL YY+IEST+AL +SF+INLFVTTVFAKGFY T+ AN+IGLVNAGQYLQEKYGGG+FPI
Sbjct: 275 ALNYYTIESTIALFISFLINLFVTTVFAKGFYNTDLANSIGLVNAGQYLQEKYGGGVFPI 334

Query: 335 LYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFD 394
           LYIW IGLLAAGQSSTITGTYAGQFIMGGFLN ++KKWLRALITRSCAI+PTIIVALVFD
Sbjct: 335 LYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNFKMKKWLRALITRSCAIIPTIIVALVFD 394

Query: 395 TSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVIL 454
           +SE  LDVLNEWLNVLQS+QIPFALIPLL LVS+E IMG+FKIGP+ K ++WLVA LVI+
Sbjct: 395 SSEATLDVLNEWLNVLQSIQIPFALIPLLCLVSKEQIMGSFKIGPLYKTIAWLVAALVIM 454

Query: 455 INGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSW 501
           INGYLLLEFFS+EV+G++    + +FTA Y AFI+YL++RGITF+ W
Sbjct: 455 INGYLLLEFFSNEVSGIVYTGFVTLFTASYGAFILYLIARGITFTPW 501
Vacuolar metal transporter involved in intracellular metal homeostasis. Can transport iron (Fe), manganese (Mn) and cadmium (Cd). Regulates metal accumulation under Fe starvation. Acts redundantly with NRAMP4 to mobilize vacuolar Fe and provide sufficient Fe during seed germination. In association with NRAMP4, required for optimal growth and photosynthesis under Mn deficiency. Exports Mn from vacuoles in leaf mesophyll cells, making Mn available for functional photosystem II in chloroplasts. Involved in basal resistance to the bacterial pathogen E.chrysanthemi.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C6B2|NRAM2_ARATH Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FN18|NRAM4_ARATH Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1 Back     alignment and function description
>sp|Q2QN30|NRAM6_ORYSJ Metal transporter Nramp6 OS=Oryza sativa subsp. japonica GN=NRAMP6 PE=2 SV=1 Back     alignment and function description
>sp|Q10Q65|NRAM2_ORYSJ Metal transporter Nramp2 OS=Oryza sativa subsp. japonica GN=NRAMP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SN36|NRAM5_ARATH Metal transporter Nramp5 OS=Arabidopsis thaliana GN=NRAMP5 PE=2 SV=1 Back     alignment and function description
>sp|Q869V1|NRAM1_DICDI Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1 Back     alignment and function description
>sp|P49283|MVL_DROME Protein Malvolio OS=Drosophila melanogaster GN=Mvl PE=2 SV=2 Back     alignment and function description
>sp|P51027|NRAM1_CHICK Natural resistance-associated macrophage protein 1 OS=Gallus gallus GN=SLC11A1 PE=2 SV=1 Back     alignment and function description
>sp|P41251|NRAM1_MOUSE Natural resistance-associated macrophage protein 1 OS=Mus musculus GN=Slc11a1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
255567945509 natural resistance-associated macrophage 0.986 0.992 0.840 0.0
356541715506 PREDICTED: metal transporter Nramp3-like 0.966 0.978 0.813 0.0
356496941507 PREDICTED: metal transporter Nramp3-like 0.960 0.970 0.807 0.0
225438902520 PREDICTED: metal transporter Nramp3 [Vit 0.957 0.942 0.839 0.0
356511925516 PREDICTED: metal transporter Nramp3-like 0.978 0.970 0.791 0.0
351722293516 ferrous ion membrane transport protein D 0.964 0.957 0.802 0.0
348647349504 divalent metal transporter 1 [Arachis hy 0.960 0.976 0.803 0.0
357482723514 Natural resistance-associated macrophage 0.986 0.982 0.798 0.0
224115064491 nramp transporter [Populus trichocarpa] 0.957 0.997 0.821 0.0
297825205507 predicted protein [Arabidopsis lyrata su 0.921 0.930 0.821 0.0
>gi|255567945|ref|XP_002524950.1| natural resistance-associated macrophage protein, putative [Ricinus communis] gi|223535785|gb|EEF37447.1| natural resistance-associated macrophage protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/508 (84%), Positives = 465/508 (91%), Gaps = 3/508 (0%)

Query: 1   MPPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFT 60
           MP Q H + Q  LL     + ++ AYD  EKV ++G+D GD +N  T PPFSW+KLWLFT
Sbjct: 1   MPLQDHNR-QPLLLNQEQQEEQDTAYDSDEKVHIVGID-GDSENEDT-PPFSWRKLWLFT 57

Query: 61  GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLA 120
           GPGFLMSIAFLDPGNLEGDLQ+GAIAGYSLLWLL+WATA+GLLVQLLSARLGVATGRHLA
Sbjct: 58  GPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLA 117

Query: 121 ELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCF 180
           ELCREEYP+WARMVLW+MAELALIG+DIQEVIGSAIAIKILSNG+LPLW+GV+ITA DCF
Sbjct: 118 ELCREEYPTWARMVLWIMAELALIGADIQEVIGSAIAIKILSNGVLPLWAGVIITACDCF 177

Query: 181 IFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAV 240
           IFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKP G ELL+G+L+PKLSSKTIQQAV
Sbjct: 178 IFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPDGMELLLGVLIPKLSSKTIQQAV 237

Query: 241 GVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTV 300
           GVVGCIIMPHNVFLHSALVQSRD+D++KKGRVQEALRYYSIEST+ALV+SF+INLFVTTV
Sbjct: 238 GVVGCIIMPHNVFLHSALVQSRDVDHSKKGRVQEALRYYSIESTVALVISFVINLFVTTV 297

Query: 301 FAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFI 360
           FAK FYGTE AN+IGLVNAGQYLQ KYGGGLFPILYIW IGLLAAGQSSTITGTYAGQFI
Sbjct: 298 FAKAFYGTELANSIGLVNAGQYLQNKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFI 357

Query: 361 MGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALI 420
           MGGFLNLRLKKWLRALITRSCAIVPT+IVALVFDTSED LDVLNEWLNVLQSVQIPFALI
Sbjct: 358 MGGFLNLRLKKWLRALITRSCAIVPTMIVALVFDTSEDTLDVLNEWLNVLQSVQIPFALI 417

Query: 421 PLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVF 480
           PLL LVS+E IMGTFKIGP+LKMVSWLVA LVI+INGYLL+EFFS+EVNGV  AT + +F
Sbjct: 418 PLLCLVSKEQIMGTFKIGPLLKMVSWLVAALVIVINGYLLIEFFSTEVNGVPFATAVCIF 477

Query: 481 TAGYVAFIIYLVSRGITFSSWRAHPKLV 508
           TA YVAFI+YLVSRGI F+SW    K V
Sbjct: 478 TAAYVAFILYLVSRGIAFASWCRPQKQV 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356541715|ref|XP_003539319.1| PREDICTED: metal transporter Nramp3-like [Glycine max] Back     alignment and taxonomy information
>gi|356496941|ref|XP_003517323.1| PREDICTED: metal transporter Nramp3-like [Glycine max] Back     alignment and taxonomy information
>gi|225438902|ref|XP_002283902.1| PREDICTED: metal transporter Nramp3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511925|ref|XP_003524672.1| PREDICTED: metal transporter Nramp3-like [Glycine max] Back     alignment and taxonomy information
>gi|351722293|ref|NP_001236727.1| ferrous ion membrane transport protein DMT1 [Glycine max] gi|31322147|gb|AAO39834.1| ferrous ion membrane transport protein DMT1 [Glycine max] Back     alignment and taxonomy information
>gi|348647349|gb|AEP81324.1| divalent metal transporter 1 [Arachis hypogaea] Back     alignment and taxonomy information
>gi|357482723|ref|XP_003611648.1| Natural resistance-associated macrophage protein [Medicago truncatula] gi|355512983|gb|AES94606.1| Natural resistance-associated macrophage protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224115064|ref|XP_002332228.1| nramp transporter [Populus trichocarpa] gi|222831841|gb|EEE70318.1| nramp transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297825205|ref|XP_002880485.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326324|gb|EFH56744.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
TAIR|locus:2045344509 NRAMP3 "natural resistance-ass 0.951 0.956 0.803 3.7e-213
TAIR|locus:2036751530 NRAMP2 "NRAMP metal ion transp 0.966 0.933 0.766 9.8e-206
TAIR|locus:2158242512 NRAMP4 "natural resistance ass 0.960 0.960 0.746 3e-204
TAIR|locus:2124172530 NRAMP5 [Arabidopsis thaliana ( 0.955 0.922 0.691 1.1e-183
DICTYBASE|DDB_G0276973533 nramp1 "solute carrier family 0.861 0.827 0.52 4e-122
ZFIN|ZDB-GENE-021115-1547 slc11a2 "solute carrier family 0.501 0.469 0.596 1.2e-117
UNIPROTKB|F1Q2X9568 SLC11A2 "Uncharacterized prote 0.509 0.459 0.601 4.2e-117
UNIPROTKB|A7MBI9562 SLC11A2 "Uncharacterized prote 0.501 0.457 0.611 6.8e-117
MGI|MGI:1345279568 Slc11a2 "solute carrier family 0.507 0.457 0.6 4.7e-116
FB|FBgn0011672596 Mvl "Malvolio" [Drosophila mel 0.519 0.446 0.586 4.7e-116
TAIR|locus:2045344 NRAMP3 "natural resistance-associated macrophage protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2060 (730.2 bits), Expect = 3.7e-213, P = 3.7e-213
 Identities = 396/493 (80%), Positives = 444/493 (90%)

Query:    15 PLLADDREER--AYDPTEKVVVIXXXXXXXXNLST----APPFSWKKLWLFTGPGFLMSI 68
             PLL ++ EE   AYD TEKV ++                APPFSWKKLWLFTGPGFLMSI
Sbjct:     9 PLLINEEEEEETAYDETEKVHIVRNEEEDDLEHGVGCGGAPPFSWKKLWLFTGPGFLMSI 68

Query:    69 AFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYP 128
             AFLDPGNLEGDLQ+GA+AGYSLLWLL+WATA+GLLVQLLSARLGVATGRHLAELCR+EYP
Sbjct:    69 AFLDPGNLEGDLQAGAVAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCRDEYP 128

Query:   129 SWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENY 188
             +WARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLW+GVVITALDCF+FLFLENY
Sbjct:   129 TWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWAGVVITALDCFVFLFLENY 188

Query:   189 GVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIM 248
             G+RKLEAVFAVLIATM +SFAWMFG+ KPSGSELLIGILVPKLSS+TIQ+AVGVVGCIIM
Sbjct:   189 GIRKLEAVFAVLIATMGVSFAWMFGQAKPSGSELLIGILVPKLSSRTIQKAVGVVGCIIM 248

Query:   249 PHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGT 308
             PHNVFLHSALVQSR++D  +K RVQEAL YY+IEST+AL +SF+INLFVTTVFAKGFY T
Sbjct:   249 PHNVFLHSALVQSREVDKRQKYRVQEALNYYTIESTIALFISFLINLFVTTVFAKGFYNT 308

Query:   309 EQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLR 368
             + AN+IGLVNAGQYLQEKYGGG+FPILYIW IGLLAAGQSSTITGTYAGQFIMGGFLN +
Sbjct:   309 DLANSIGLVNAGQYLQEKYGGGVFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNFK 368

Query:   369 LKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQ 428
             +KKWLRALITRSCAI+PTIIVALVFD+SE  LDVLNEWLNVLQS+QIPFALIPLL LVS+
Sbjct:   369 MKKWLRALITRSCAIIPTIIVALVFDSSEATLDVLNEWLNVLQSIQIPFALIPLLCLVSK 428

Query:   429 EHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFI 488
             E IMG+FKIGP+ K ++WLVA LVI+INGYLLLEFFS+EV+G++    + +FTA Y AFI
Sbjct:   429 EQIMGSFKIGPLYKTIAWLVAALVIMINGYLLLEFFSNEVSGIVYTGFVTLFTASYGAFI 488

Query:   489 IYLVSRGITFSSW 501
             +YL++RGITF+ W
Sbjct:   489 LYLIARGITFTPW 501
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0005384 "manganese ion transmembrane transporter activity" evidence=TAS
GO:0006828 "manganese ion transport" evidence=RCA;IMP;TAS
GO:0006875 "cellular metal ion homeostasis" evidence=NAS
GO:0015691 "cadmium ion transport" evidence=RCA;TAS
GO:0015692 "lead ion transport" evidence=TAS
GO:0030001 "metal ion transport" evidence=TAS
GO:0046873 "metal ion transmembrane transporter activity" evidence=TAS
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0005773 "vacuole" evidence=IDA
GO:0009617 "response to bacterium" evidence=IEP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IGI
GO:0055072 "iron ion homeostasis" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2036751 NRAMP2 "NRAMP metal ion transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158242 NRAMP4 "natural resistance associated macrophage protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124172 NRAMP5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276973 nramp1 "solute carrier family 11 member 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021115-1 slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2X9 SLC11A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBI9 SLC11A2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1345279 Slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0011672 Mvl "Malvolio" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2G2G3MNTH_STAA8No assigned EC number0.34630.82220.9355yesno
O77741NRAM1_PIGNo assigned EC number0.47740.89450.8513yesno
Q6GAA9MNTH_STAASNo assigned EC number0.34630.82220.9355yesno
Q4L5B9MNTH_STAHJNo assigned EC number0.34860.84170.9663yesno
O54902NRAM2_RATNo assigned EC number0.51370.80270.7235yesno
Q5HQ64MNTH_STAEQNo assigned EC number0.35160.83980.9492yesno
Q5HGX9MNTH_STAACNo assigned EC number0.34630.82220.9355yesno
Q8CPM6MNTH_STAESNo assigned EC number0.35160.83980.9492yesno
A6QFW1MNTH_STAAENo assigned EC number0.34630.82220.9355yesno
Q869V1NRAM1_DICDINo assigned EC number0.56650.73240.7035yesno
Q9FN18NRAM4_ARATHNo assigned EC number0.74940.96280.9628nono
P41251NRAM1_MOUSENo assigned EC number0.46770.91790.8576yesno
A5IRZ2MNTH_STAA9No assigned EC number0.34630.82220.9355yesno
Q99UZ7MNTH_STAANNo assigned EC number0.34630.82220.9355yesno
Q2QN30NRAM6_ORYSJNo assigned EC number0.76230.91990.8706yesno
Q7A166MNTH_STAAWNo assigned EC number0.34630.82220.9355yesno
P49279NRAM1_HUMANNo assigned EC number0.51810.80850.7527yesno
A6U0S3MNTH_STAA2No assigned EC number0.34630.82220.9355yesno
Q9SNV9NRAM3_ARATHNo assigned EC number0.82650.90620.9115yesno
Q9C6B2NRAM2_ARATHNo assigned EC number0.79030.92960.8981nono
Q10Q65NRAM2_ORYSJNo assigned EC number0.72070.94140.9198nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
TIGR01197390 TIGR01197, nramp, NRAMP (natural resistance-associ 1e-139
PRK00701439 PRK00701, PRK00701, manganese transport protein Mn 1e-123
pfam01566364 pfam01566, Nramp, Natural resistance-associated ma 1e-112
COG1914416 COG1914, MntH, Mn2+ and Fe2+ transporters of the N 1e-87
>gnl|CDD|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information 
 Score =  406 bits (1045), Expect = e-139
 Identities = 183/397 (46%), Positives = 246/397 (61%), Gaps = 25/397 (6%)

Query: 54  KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGV 113
           +KLW F GPGFLMSIA++DPGN   DLQ+GA AGY LLW+LL +  + LL+Q L ARLGV
Sbjct: 1   RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGV 60

Query: 114 ATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVV 173
            TG  LAE+CRE YP   R+ LW++AELA+I +D+ EVIG+AIA+ +LS+  +PLW GV+
Sbjct: 61  VTGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSH--IPLWGGVL 118

Query: 174 ITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPK--- 230
           IT +D F+FLFL+  G+R LEA  A+L+  +A+ FA+     KP   ++L G  VP    
Sbjct: 119 ITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAKPGQVKVLFGGFVPSCAV 178

Query: 231 LSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVS 290
             +  + QAVG++G  +MPH+++LHSALVQSR +D + K  V EA  Y  IE+ +AL VS
Sbjct: 179 FGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVS 238

Query: 291 FMINLFVTTVFAKGFYG---------------TEQANNIGLVNAGQYLQEKYGGGLFPIL 335
           F IN FV  +F    +                   A+   L + G  L   +        
Sbjct: 239 FSINEFVIALFTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCLFSPA---AG 295

Query: 336 YIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDT 395
           YI+ +GLLAAGQSS + GTY+GQF+M GFLN R   WLR LITR+ AI+P ++VA     
Sbjct: 296 YIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGR 355

Query: 396 SEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIM 432
               L        V+ S+ +PFALIPL+   S + IM
Sbjct: 356 EG--LTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390

This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival [Transport and binding proteins, Cations and iron carrying compounds]. Length = 390
>gnl|CDD|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed Back     alignment and domain information
>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein Back     alignment and domain information
>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 512
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 100.0
PRK00701439 manganese transport protein MntH; Reviewed 100.0
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 100.0
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 100.0
PF01566358 Nramp: Natural resistance-associated macrophage pr 100.0
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.84
TIGR00813407 sss transporter, SSS family. have different number 98.81
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.76
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 98.75
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.7
PRK15419502 proline:sodium symporter PutP; Provisional 98.69
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.56
PRK15132403 tyrosine transporter TyrP; Provisional 98.55
PRK13629443 threonine/serine transporter TdcC; Provisional 98.53
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.42
COG1457442 CodB Purine-cytosine permease and related proteins 98.38
PRK12488549 acetate permease; Provisional 98.38
PRK11375484 allantoin permease; Provisional 98.37
PRK09395551 actP acetate permease; Provisional 98.32
PRK09664415 tryptophan permease TnaB; Provisional 98.3
TIGR00814397 stp serine transporter. The HAAAP family includes 98.17
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.11
PRK10483414 tryptophan permease; Provisional 98.08
PRK10249458 phenylalanine transporter; Provisional 98.07
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 98.07
TIGR00837381 araaP aromatic amino acid transport protein. aroma 98.0
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.98
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 97.88
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.88
PRK11387471 S-methylmethionine transporter; Provisional 97.87
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.84
PRK10238456 aromatic amino acid transporter; Provisional 97.76
PRK11017404 codB cytosine permease; Provisional 97.75
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.57
COG3949349 Uncharacterized membrane protein [Function unknown 97.57
PRK10484523 putative transporter; Provisional 97.51
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.5
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.39
COG0814415 SdaC Amino acid permeases [Amino acid transport an 97.33
PRK15049499 L-asparagine permease; Provisional 97.31
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 97.26
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.25
TIGR00930 953 2a30 K-Cl cotransporter. 97.16
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 97.1
TIGR00907482 2A0304 amino acid permease (GABA permease). 97.08
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 97.04
TIGR00911501 2A0308 L-type amino acid transporter. 96.71
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 96.57
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 96.56
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.52
COG4147529 DhlC Predicted symporter [General function predict 96.47
PRK10644445 arginine:agmatin antiporter; Provisional 96.44
PRK11021410 putative transporter; Provisional 96.23
TIGR00908442 2A0305 ethanolamine permease. The three genes used 96.14
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 96.03
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 95.99
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 95.95
PRK10746461 putative transport protein YifK; Provisional 95.78
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 95.74
TIGR00913478 2A0310 amino acid permease (yeast). 95.63
TIGR00912359 2A0309 spore germination protein (amino acid perme 95.59
TIGR00909429 2A0306 amino acid transporter. 95.51
PRK10197446 gamma-aminobutyrate transporter; Provisional 95.14
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 94.95
PRK10580457 proY putative proline-specific permease; Provision 94.95
TIGR00906557 2A0303 cationic amino acid transport permease. 94.72
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 94.63
PRK11357445 frlA putative fructoselysine transporter; Provisio 94.6
PRK15015 701 carbon starvation protein A; Provisional 94.13
COG1966575 CstA Carbon starvation protein, predicted membrane 94.1
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.95
KOG1289550 consensus Amino acid transporters [Amino acid tran 93.33
PF03845320 Spore_permease: Spore germination protein; InterPr 92.69
PRK15433439 branched-chain amino acid transport system 2 carri 91.97
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 91.08
COG0531466 PotE Amino acid transporters [Amino acid transport 91.01
COG0833541 LysP Amino acid transporters [Amino acid transport 90.81
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 90.56
PRK10655438 potE putrescine transporter; Provisional 89.29
KOG1286554 consensus Amino acid transporters [Amino acid tran 87.12
PRK10836489 lysine transporter; Provisional 86.75
PLN03074473 auxin influx permease; Provisional 85.15
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-114  Score=891.01  Aligned_cols=445  Identities=61%  Similarity=1.007  Sum_probs=426.1

Q ss_pred             CCCCccHHHHHHhhchHHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhh
Q 010382           47 TAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREE  126 (512)
Q Consensus        47 ~~~~~~~~~l~~~lGPG~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~  126 (512)
                      +.++++|||+|+++||||+||+||+||||++||+||||++||+|||++++++++++++|++|||+|+||||||+|.||+|
T Consensus        19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~   98 (503)
T KOG1291|consen   19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE   98 (503)
T ss_pred             CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 010382          127 YPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMAL  206 (512)
Q Consensus       127 yg~~~~~~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l  206 (512)
                      ||||.|+.+|+++|++++++|+||++|+|+|+|+|++  +|+|+||++|++||++++++.|||.||+|.++++++..|.+
T Consensus        99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~--IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai  176 (503)
T KOG1291|consen   99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN--IPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAI  176 (503)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHhhheecCChhhhhhcccccCCC---hhHHHHHHHHHcccchhHHHHHHHHHhhhhccCccchhhhHHHHhHHHHHH
Q 010382          207 SFAWMFGETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIES  283 (512)
Q Consensus       207 ~F~~~~~~~~P~~~~v~~G~~vP~~~---~~~l~~~valvGatImP~n~flhS~lvq~r~~~~~~~~~~~~~~~~~~~d~  283 (512)
                      ||.+++..++|+.++++.|.++|+++   ++.+.+++|++||+|||||+|+||++||+|+.|++.+++++|+++|..+|+
T Consensus       177 ~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies  256 (503)
T KOG1291|consen  177 SFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIES  256 (503)
T ss_pred             HHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHH
Confidence            99999999999999999999999987   789999999999999999999999999999999998999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HhhhccCCcccc-------------cccchHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010382          284 TLALVVSFMINLFVTTVF-AKGFYGTEQANN-------------IGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSS  349 (512)
Q Consensus       284 ~~~l~vs~lI~~~i~~v~-A~~l~~~~~~~~-------------~~l~~a~~~L~~~~G~~~~~a~~if~igllaAg~sS  349 (512)
                      .+++.++|.||.+++.++ |+.+|++.+...             .++.++++.|++.+|+   ++.++|++|+++|||||
T Consensus       257 ~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~---~a~~Ifai~lLasGQSs  333 (503)
T KOG1291|consen  257 AIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGP---AALYIFAIGLLASGQSS  333 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhcc---HHHHHHHHHHHHCCCcc
Confidence            999999999999999999 999998775432             2477789999999998   99999999999999999


Q ss_pred             HHhhhhhHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 010382          350 TITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQE  429 (512)
Q Consensus       350 tit~t~ag~~v~~gfl~~~~~~~~~~~~~~~~aivpal~va~~~g~~~~~l~~l~~~~~Vl~si~LPfalipll~l~n~~  429 (512)
                      ++||||+||++||||+||++++|.|+++||++|++|++++++.+|.+  +++++++++||+|+++|||+++|++.++|+|
T Consensus       334 titgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~--~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r  411 (503)
T KOG1291|consen  334 TITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGED--GLSGLNDFLNVLQSLQLPFAVIPLLTFTSSR  411 (503)
T ss_pred             cceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcc--cHHHHHHHHHHHHHHhhhHHHhhHHhhhccH
Confidence            99999999999999999999999999999999999999999988854  4899999999999999999999999999999


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010382          430 HIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVN-GVLIATVIGVFTAGYVAFIIYLVSRGITF  498 (512)
Q Consensus       430 ~iMG~~~n~~~~~il~~~~~~~i~~ln~~~l~~~l~~~~~-~~~~~~~~~~~~~~y~~~~~yl~~~~~~~  498 (512)
                      ++||+|+|+...+..+|.+..+++.+|.|++++....... ++.++..+....+.|++|++||+.+.++.
T Consensus       412 ~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~~~~~~~~~~~~~~~~~~~y~~~i~yL~~~~l~~  481 (503)
T KOG1291|consen  412 KIMGVFKNGLVTEELTWTVAALVLGINGYFLVSFFWSLVGKHSKIVVTVNVWTLAYLAFILYLAATCLNA  481 (503)
T ss_pred             HHhhhhccCccceeeeehheeeeeeeeeEEeeeehhhhcCCceeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988877665 56778888999999999999999987554

>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 65/447 (14%), Positives = 135/447 (30%), Gaps = 122/447 (27%)

Query: 2   PPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWK-KLWLFT 60
              +    Q  L  LL     E          ++ L   ++ N      F+   K+ L T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL-------LV-LL--NVQNAKAWNAFNLSCKILLTT 272

Query: 61  GPGFLMSIA-FLDPGN-----LEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVA 114
                  +  FL         L+               LL +   +    Q L       
Sbjct: 273 RF---KQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKY---LDCRPQDLPRE---V 322

Query: 115 TGRH------LAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPL 168
              +      +AE  R+   +W     W           +  +I S  ++ +L       
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN---WKHVNC----DKLTTIIES--SLNVLEPAEY-- 371

Query: 169 WSGVVITALDCF--IFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGI 226
                      F  + +F  +             I T+ LS  W   +   S   +    
Sbjct: 372 --------RKMFDRLSVFPPS-----------AHIPTILLSLIW--FDVIKSDVMV---- 406

Query: 227 LVPKLSSKTI--QQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIEST 284
           +V KL   ++  +Q             + + S  ++ +    N+    +  + +Y+I   
Sbjct: 407 VVNKLHKYSLVEKQPK--------ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK- 457

Query: 285 LALVVSFMINLFVTTVFAKGFYGTEQANNIG--LVNAGQYLQEKYGGGLFPILYI---WG 339
                +F  +  +     + FY     ++IG  L N      E+    LF ++++   + 
Sbjct: 458 -----TFDSDDLIPPYLDQYFY-----SHIGHHLKNIEHP--ERM--TLFRMVFLDFRF- 502

Query: 340 IGLLAAGQSSTITGTYAGQFIMGGFLNL--RLKKWLRALITRSCAIVPTIIVAL---VFD 394
              L       I          G  LN   +LK + +  I  +      ++ A+   +  
Sbjct: 503 ---LEQ----KIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPK 554

Query: 395 TSEDMLDVLNEWLNVLQSVQIPFALIP 421
             E++  + +++ ++L+      AL+ 
Sbjct: 555 IEENL--ICSKYTDLLR-----IALMA 574

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.86
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.4
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.02
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 97.97
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 97.8
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 97.77
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
Probab=98.86  E-value=2.4e-05  Score=84.21  Aligned_cols=307  Identities=15%  Similarity=0.109  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccC
Q 010382           89 SLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKIL----SNG  164 (512)
Q Consensus        89 ~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~l~i~~~la~i~~di~eviG~aial~lL----~gg  164 (512)
                      +-++.+++++++..++-.+.++.|.-+|.+-.+..|..||++.+.+.-+...+..++-..-+....+.+++.+    +| 
T Consensus        60 ~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g-  138 (501)
T 2jln_A           60 QVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG-  138 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            3456777888888888889999999999999999999999976554322222222222222223333344433    35 


Q ss_pred             Cch-hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh-eecCChhhhhhcccccCCChhHHHHHHHH
Q 010382          165 ILP-LWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFG-ETKPSGSELLIGILVPKLSSKTIQQAVGV  242 (512)
Q Consensus       165 ~ip-l~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~~-~~~P~~~~v~~G~~vP~~~~~~l~~~val  242 (512)
                       .+ .|++.++..+.++.+.+.+-...+++|++...++.+..+...+..+ ..+.+..++...  .|.-+.-.+..++..
T Consensus       139 -~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~--~~~~~~~~f~~ai~~  215 (501)
T 2jln_A          139 -FTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSM--GGENPGMPFSTAIMI  215 (501)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTC--CCSSCCSCHHHHHHH
T ss_pred             -cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhcc--CCccchHHHHHHHHH
Confidence             44 6777777666544433333222345555544333333222222211 222211443321  122112223333433


Q ss_pred             -HcccchhHHHHHHHHHhhhhccCccchhhhHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccch
Q 010382          243 -VGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALR---YYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN  318 (512)
Q Consensus       243 -vGatImP~n~flhS~lvq~r~~~~~~~~~~~~~~~---~~~~d~~~~l~vs~lI~~~i~~v~A~~l~~~~~~~~~~l~~  318 (512)
                       +|..+ ++.. ..+...  |..+++++...|...+   ....-+.+|+.+...+..++-++.+..   .      ...|
T Consensus       216 ~~~~~~-~~~~-~~~Dys--Ry~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~---~------~~~d  282 (501)
T 2jln_A          216 FVGGWI-AVVV-SIHDIV--KECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL---V------GEWN  282 (501)
T ss_dssp             HHTTTH-HHHT-TTHHHH--TTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H------SCSC
T ss_pred             HHHHHH-HHHh-ccCccc--ccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh---c------cccC
Confidence             44322 1111 123332  3222211101111111   134445556555443322222221111   1      1234


Q ss_pred             HHHHHHHhhcCChhHH-HHHHH-HHHHHhhhhhHHh-hhhhHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 010382          319 AGQYLQEKYGGGLFPI-LYIWG-IGLLAAGQSSTIT-GTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDT  395 (512)
Q Consensus       319 a~~~L~~~~G~~~~~a-~~if~-igllaAg~sStit-~t~ag~~v~~gfl~~~~~~~~~~~~~~~~aivpal~va~~~g~  395 (512)
                      ..+.+...+...  .. ..+.. +.++.+..++... +.|+...-++.+..+..+   |+..+..+.++. ..++.+ + 
T Consensus       283 p~~~l~~~l~~~--~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~---~~~~~~i~~vi~-~~i~~~-~-  354 (501)
T 2jln_A          283 PVIAITEVVGGV--SIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFT---FKTGVIVSAVVG-LLMMPW-Q-  354 (501)
T ss_dssp             HHHHHHHHHTCC--CHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCC---HHHHHHHHHHHH-HHTCGG-G-
T ss_pred             HHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccccc---hhHHHHHHHHHH-HHHHHH-H-
Confidence            455666654321  12 23333 4444444455553 678777666666443212   222221222222 121121 1 


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010382          396 SEDMLDVLNEWLNVLQSVQIPFALIPLL  423 (512)
Q Consensus       396 ~~~~l~~l~~~~~Vl~si~LPfalipll  423 (512)
                      +   .+.+..++..+..+.-|...+-+.
T Consensus       355 ~---~~~f~~FL~~lg~~l~P~~gI~l~  379 (501)
T 2jln_A          355 F---AGVLNTFLNLLASALGPLAGIMIS  379 (501)
T ss_dssp             T---HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             h---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   356777888888888888888763
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00