Citrus Sinensis ID: 010399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHcccccccccccHHHHHHHHHHccccccc
cccccEEccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcHHHcHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHEEccccc
mrdlksvlsskestkadvnrrssnyhpsiwgdhfinvssnekytnTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDShvngncdvnydhnnDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLShlstplvdqvehsleiplhrgmprleARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDfatklpfardrWEVVAANELPKYMQVCYFALLDVVKEMEDKlvnkeplccMYYAKEAIKGLVKAYFVEAkwfhakyvptfeecvenstmssgypMLAVEALVGLEDMAITKRALDWaisvpkiirsssliarldddvhtykveqergdapssvECYVQQYGVSEEEACNKIKGMVEIEWMNineeiqdpnhpplqwllpslNLARMMVVLYQngdgytnstgktkdriasllvdplpm
mrdlksvlsskestkadvnrrssnyhpsiwgdhfinvsSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALdwaisvpkiirsssliarlDDDVHTYKVeqergdapssvECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGdgytnstgktkdriasllvdplpm
MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFsrkhlksllshlsTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
**************************PSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVE********SVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYT********************
***************************SIWGDHFINVSS***********RFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS*****LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
********************RSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKV*********SVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
*****SV***********NRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
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MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTxxxxxxxxxxxxxxxxxxxxxNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query511 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.960 0.881 0.419 1e-127
D0VMR7547 Delta-guaiene synthase 2 N/A no 0.933 0.872 0.409 1e-117
D0VMR6547 Delta-guaiene synthase 1 N/A no 0.933 0.872 0.412 1e-117
D0VMR8547 Delta-guaiene synthase 3 N/A no 0.933 0.872 0.410 1e-116
F6M8H4559 Probable sesquiterpene sy N/A no 0.947 0.865 0.421 1e-116
F6M8H7562 Probable sesquiterpene sy N/A no 0.945 0.859 0.418 1e-116
D0VMR5547 Inactive delta-guaiene sy N/A no 0.933 0.872 0.407 1e-114
B5A435559 Sesquiterpene synthase OS N/A no 0.976 0.892 0.416 1e-114
Q43714555 (+)-delta-cadinene syntha N/A no 0.956 0.881 0.417 1e-113
E3W207559 Sesquiterpene synthase OS N/A no 0.976 0.892 0.412 1e-113
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  454 bits (1167), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/563 (41%), Positives = 349/563 (61%), Gaps = 72/563 (12%)

Query: 7   VLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS- 65
           +L+  ++   +V RR +N+HPSIWGDHF++ +S    T+  +++  + LK E+ K+L++ 
Sbjct: 9   LLAPSKNLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAA 68

Query: 66  -NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYI 124
            +++A K L     +++ +QRLGVAYHFE+EI E L+ ++D  V            D+Y 
Sbjct: 69  DDDSAQKLL-----LIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSA-------EEDVYT 116

Query: 125 VALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184
            +LRFRLLRQ GY VS D+F  F+D +G FK  L++D +G+L LYEA++ RV GE+IL+E
Sbjct: 117 ASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDE 176

Query: 185 ACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELIL 244
           A  F+  HL+S   H S PL +QV H+L+ P+ +G+PRLEAR Y S+Y+AD+S  N+ +L
Sbjct: 177 ALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDS-HNKALL 235

Query: 245 ELAKLDFNLLQALHRIELSEISRWWKDIDFATKLP-----------------------FA 281
           +LAKLDFNLLQ LH+ ELS+IS WWKD+DFA KLP                       FA
Sbjct: 236 KLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFA 295

Query: 282 R---------------------------------DRWEVVAANELPKYMQVCYFALLDVV 308
           R                                 +RW++ A ++LP+YM+VCY ALL V 
Sbjct: 296 RRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVY 355

Query: 309 KEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPM 368
            E+E+++  +     +YYAKEA+K  V+AY+ EAKW   + +PT EE +  + ++S Y M
Sbjct: 356 SEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSM 415

Query: 369 LAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVEC 428
           LA  + VG+ D A+TK + DW  S PKI+R+S+++ RL DD+  +K EQ+RG   S+VEC
Sbjct: 416 LATTSFVGMGD-AVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVEC 474

Query: 429 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGD 488
           Y++Q+G SE+E  N+    V   W +INEE   P   P+  L+  LNLAR++ V+Y+N D
Sbjct: 475 YMKQHGASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNED 534

Query: 489 GYTNSTGKTKDRIASLLVDPLPM 511
           GYT+     KD + S+L+DP+P+
Sbjct: 535 GYTHFGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|D0VMR7|DGUS2_AQUCR Delta-guaiene synthase 2 OS=Aquilaria crassna GN=C3 PE=1 SV=1 Back     alignment and function description
>sp|D0VMR6|DGUS1_AQUCR Delta-guaiene synthase 1 OS=Aquilaria crassna GN=C2 PE=1 SV=1 Back     alignment and function description
>sp|D0VMR8|DGUS3_AQUCR Delta-guaiene synthase 3 OS=Aquilaria crassna GN=C4 PE=1 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|D0VMR5|DGUSI_AQUCR Inactive delta-guaiene synthase OS=Aquilaria crassna GN=C1 PE=1 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.960 0.881 0.420 1e-126
147856860557 hypothetical protein VITISV_030783 [Viti 0.960 0.881 0.420 1e-126
147828675557 hypothetical protein VITISV_013313 [Viti 0.960 0.881 0.419 1e-125
75223414557 RecName: Full=(-)-germacrene D synthase 0.960 0.881 0.419 1e-125
225470617560 PREDICTED: (-)-germacrene D synthase [Vi 0.964 0.880 0.421 1e-118
147845901555 hypothetical protein VITISV_040547 [Viti 0.939 0.864 0.427 1e-118
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.960 0.881 0.401 1e-117
224125898554 predicted protein [Populus trichocarpa] 0.954 0.880 0.414 1e-116
411025692547 delta-guaiene synthase [Aquilaria sinens 0.933 0.872 0.414 1e-116
411025690547 delta-guaiene synthase [Aquilaria sinens 0.933 0.872 0.414 1e-116
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/563 (42%), Positives = 351/563 (62%), Gaps = 72/563 (12%)

Query: 7   VLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS- 65
           +L+  ++   +V RR +N+HPSIWGDHF++ +S    T+  +++  + LK E+ K+L++ 
Sbjct: 9   LLAPSKNLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAA 68

Query: 66  -NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYI 124
            +++A K L     +++ +QRLGVAYHFE+EI E L+ ++D  V            D+Y 
Sbjct: 69  DDDSAQKLL-----LIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSA-------EEDVYT 116

Query: 125 VALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184
            +LRFRLLRQ GY VS D+F  F+D +G FK  L++D +G+L LYEA++ RV GE+IL+E
Sbjct: 117 ASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDE 176

Query: 185 ACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELIL 244
           A  F+  HL+S   H S PL +QV H+L+ P+ +G+PRLEAR Y S+Y+AD+S  N+ +L
Sbjct: 177 ALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDS-HNKALL 235

Query: 245 ELAKLDFNLLQALHRIELSEISRWWKDIDFATKLP-----------------------FA 281
           +LAKLDFNLLQ LH+ ELS+IS WWKD+DFA KLP                       FA
Sbjct: 236 KLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFA 295

Query: 282 R---------------------------------DRWEVVAANELPKYMQVCYFALLDVV 308
           R                                 +RW++ A ++LP+YM+VCY ALL V 
Sbjct: 296 RRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVY 355

Query: 309 KEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPM 368
            E+E+++  +     +YYAKEA+K  V+AY+ EAKW   + +PT EE +  + ++S Y M
Sbjct: 356 SEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSM 415

Query: 369 LAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVEC 428
           LA  + VG+ D A+TK + DW  S PKI+R+S+++ RL DD+ ++K EQ+RG   S+VEC
Sbjct: 416 LATTSFVGMGD-AVTKESFDWIFSKPKIVRASAIVCRLMDDMVSHKFEQKRGHVASAVEC 474

Query: 429 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGD 488
           Y++Q+G SE+E  N+    V   W +INEE   P   P+  L+  LNLAR++ V+Y+N D
Sbjct: 475 YMKQHGASEQETHNEFHKQVRDAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNED 534

Query: 489 GYTNSTGKTKDRIASLLVDPLPM 511
           GYT+S    KD + S+L+DP+P+
Sbjct: 535 GYTHSGTVLKDFVTSMLIDPVPI 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225470617|ref|XP_002263580.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845901|emb|CAN82172.1| hypothetical protein VITISV_040547 [Vitis vinifera] gi|313755460|gb|ADR74221.1| (E)-beta-caryophyllene synthase [synthetic construct] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224125898|ref|XP_002329744.1| predicted protein [Populus trichocarpa] gi|222870652|gb|EEF07783.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|411025692|gb|AFV99466.1| delta-guaiene synthase [Aquilaria sinensis] Back     alignment and taxonomy information
>gi|411025690|gb|AFV99465.1| delta-guaiene synthase [Aquilaria sinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.540 0.493 0.484 1.4e-118
UNIPROTKB|D0VMR6547 C2 "Delta-guaiene synthase 1" 0.502 0.469 0.455 2.6e-113
UNIPROTKB|D0VMR7547 C3 "Delta-guaiene synthase 2" 0.502 0.469 0.448 5.5e-113
UNIPROTKB|D0VMR8547 C4 "Delta-guaiene synthase 3" 0.502 0.469 0.448 1.4e-112
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.502 0.467 0.455 5e-108
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.512 0.458 0.443 2e-100
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.528 0.486 0.414 6e-97
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.493 0.454 0.463 6.9e-94
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.536 0.484 0.404 1e-92
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.524 0.475 0.402 8.9e-92
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 658 (236.7 bits), Expect = 1.4e-118, Sum P(2) = 1.4e-118
 Identities = 138/285 (48%), Positives = 192/285 (67%)

Query:     1 MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIE 60
             M + K  +SS  + K +++R  +N+ PSIWGD FIN +  ++    + E++ E LK ++ 
Sbjct:     1 MENQKVPISSVPNLK-ELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVR 59

Query:    61 KLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY-DSHVNGNCDVNYDHN 119
             + L +  T  K L+++  I++  QRLG+AYHFENEI+E+L+ IY  ++V  NC   +  +
Sbjct:    60 RELAA--TVDKPLQQL-NIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNC---FQGS 113

Query:   120 NDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGE 179
             +DLY VAL FRLLRQ GYKVS D+F KFRD +  FK  L  DAKGLL LYEA++L V GE
Sbjct:   114 HDLYSVALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGE 173

Query:   180 NILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTR 239
              +L++A EF              PL +QV H+L  PL +G+PRLEA  +  IYEA +S  
Sbjct:   174 EMLDDALEFAKTRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDS-H 232

Query:   240 NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR 284
             N+ +L+LAKLDFNLLQ+LH+ ELS+++RWWK +DFA K PFARDR
Sbjct:   233 NKALLKLAKLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDR 277
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR7 C3 "Delta-guaiene synthase 2" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.41910.96080.8815yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-72
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-53
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 7e-48
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 8e-35
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 7e-24
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-17
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 5e-15
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 1e-14
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  529 bits (1366), Expect = 0.0
 Identities = 236/551 (42%), Positives = 319/551 (57%), Gaps = 71/551 (12%)

Query: 20  RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVA 78
           R S+N+ PS+WGD HF+++SS+      E+E+  E LK E+ K+L  +       E +  
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWL 59

Query: 79  IVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYK 138
           I   LQRLG++YHFE+EIKE L  IY             + +DLY  AL FRLLRQHGY 
Sbjct: 60  IDR-LQRLGISYHFEDEIKEILDYIYRYWTERGES----NEDDLYTTALGFRLLRQHGYN 114

Query: 139 VSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS 198
           VS+D+FKKF+DE G+FK  LT D KG+L LYEAS+L   GE+IL+EA  F+ KHL+  L 
Sbjct: 115 VSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLE 174

Query: 199 H---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQ 255
               +   L  ++E++LEIPLH  +PRLEAR YI  YE ++   NE +LELAKLDFN+LQ
Sbjct: 175 SNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDD-HNETLLELAKLDFNILQ 233

Query: 256 ALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKY-----MQVCYFAL 304
           ALH+ EL  +SRWWKD+D A+KLPFARDR      W        P+Y           AL
Sbjct: 234 ALHQEELKILSRWWKDLDLASKLPFARDRLVECYFW-AAGTYFEPQYSLARIALAKTIAL 292

Query: 305 LDVVKEMED------------KLVNKEPLCCM----YYAKEAIKGL-------------- 334
           + V+ +  D            + V +  +  +     Y K   K L              
Sbjct: 293 ITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKE 352

Query: 335 ----------------VKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLE 378
                           VKAY VEAKW H  YVPTFEE +EN+ +S G   L + + +G+ 
Sbjct: 353 GGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMG 412

Query: 379 DMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEE 438
           D+ +T+ A +W  S PK++R+SS I RL +D+ TY+ E +RGD  SS+ECY+++YGVSEE
Sbjct: 413 DI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEE 471

Query: 439 EACNKIKGMVEIEWMNINEEIQDPNHP-PLQWLLPSLNLARMMVVLYQNGDGYTNSTGKT 497
           EA  +IK M+E  W  +NEE   P+   P       LNLAR++ V Y+ GDG+T+  G+ 
Sbjct: 472 EAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEI 531

Query: 498 KDRIASLLVDP 508
           KD I SLL +P
Sbjct: 532 KDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 511
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PLN0215096 terpene synthase/cyclase family protein 99.98
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.89
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.57
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 95.84
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 94.09
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 92.25
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.2e-138  Score=1136.87  Aligned_cols=477  Identities=51%  Similarity=0.870  Sum_probs=452.5

Q ss_pred             CCCCCCCCCCCCC-CccccCCCccccchHHHHHHHHHHHHHHHHHhc---cccCccCHHHHHHHHHHHHHhCcccCcHHH
Q 010399           20 RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS---NNTAWKTLEEIVAIVNQLQRLGVAYHFENE   95 (511)
Q Consensus        20 r~~~~~~ps~W~d-~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~---~~~~~~d~~~~L~lID~lqrLGi~~hFe~E   95 (511)
                      ||+++||||+||| +|+++++... ....+.+++++||++||+||..   ..    |++++|+|||+||||||+|||++|
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~-~~~~~~~~~~~lk~~v~~~~~~~~~~~----~~~~~l~liD~lqrLGi~~hF~~E   75 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPV----DLFERLWLIDRLQRLGISYHFEDE   75 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcc-hhHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHHcCchhhhHHH
Confidence            7899999999999 6666544322 1226889999999999999986   45    899999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhcccccccccccccccchhhhhhhhhhcccc
Q 010399           96 IKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLR  175 (511)
Q Consensus        96 I~~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~  175 (511)
                      |+++|++||++|.+.....    ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||+
T Consensus        76 I~~~L~~i~~~~~~~~~~~----~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~  151 (542)
T cd00684          76 IKEILDYIYRYWTERGESN----EDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLS  151 (542)
T ss_pred             HHHHHHHHHHhhccccccc----CCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcC
Confidence            9999999999984321111    479999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHHhHhhc---CCCchHHHHHHhccCccccCcchHHHHhhHHHhhcCCccccHHHHHHHHHhhH
Q 010399          176 VQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN  252 (511)
Q Consensus       176 ~~gE~iLdeA~~Ft~~~L~~~~~~---~~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn  252 (511)
                      +|||+|||||++||++||++.+++   ++++|+++|++||++|+|+++||||||+||++|+++ +++|++||||||+|||
T Consensus       152 ~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~-~~~n~~lLelAkldfn  230 (542)
T cd00684         152 FPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQE-DDHNETLLELAKLDFN  230 (542)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCC-ccccHHHHHHHHHHHH
Confidence            999999999999999999999987   789999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccccc------------------------------------------------
Q 010399          253 LLQALHRIELSEISRWWKDIDFATKLPFARDR------------------------------------------------  284 (511)
Q Consensus       253 ~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR------------------------------------------------  284 (511)
                      +||++||+||++++|||+++||.++|||||||                                                
T Consensus       231 ~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~  310 (542)
T cd00684         231 ILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELE  310 (542)
T ss_pred             HHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHH
Confidence            99999999999999999999999999999999                                                


Q ss_pred             --------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 010399          285 --------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEE  355 (511)
Q Consensus       285 --------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleE  355 (511)
                              ||.+++++||+|||+||.+|+++++|+++++.+ +++ +++.|++++|+++++||++||+|+++||+||++|
T Consensus       311 ~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eE  389 (542)
T cd00684         311 LFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEE  389 (542)
T ss_pred             HHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence                    999999999999999999999999999999999 555 8999999999999999999999999999999999


Q ss_pred             HHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCC
Q 010399          356 CVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGV  435 (511)
Q Consensus       356 Yl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gv  435 (511)
                      ||++|.+|+|+++++++++++||.. +|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|+
T Consensus       390 Yl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~  468 (542)
T cd00684         390 YMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGV  468 (542)
T ss_pred             HHhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCC
Confidence            9999999999999999999999999 999999997777999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhccc
Q 010399          436 SEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDP  508 (511)
Q Consensus       436 S~EeA~~~i~~~Ie~~wk~ln~e~l~~-~~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~P  508 (511)
                      |+|+|+++++++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|+..||++|++||++|
T Consensus       469 s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         469 SEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            999999999999999999999999998 7899999999999999999999999999999788999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-107
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-89
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-89
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-89
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-89
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 5e-89
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 5e-89
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 8e-89
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 9e-89
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-88
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 5e-67
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 9e-62
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 5e-56
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 3e-45
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 1e-43
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 4e-42
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 4e-29
2j5c_A569 Rational Conversion Of Substrate And Product Specif 8e-37
2j5c_A569 Rational Conversion Of Substrate And Product Specif 1e-28
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 5e-26
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  384 bits (985), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/562 (39%), Positives = 316/562 (56%), Gaps = 77/562 (13%)
Query: 9   SSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS--N 66
           SS  S+  D  R  +++ PSIWGD F+N    +K  + E EKR + LK E+ K++V+   
Sbjct: 11  SSPLSSNKDEMRPKADFQPSIWGDLFLNCP--DKNIDAETEKRHQQLKEEVRKMIVAPMA 68
Query: 67  NTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVA 126
           N+  K     +A ++ +QRLGV+YHF  EI++ L+ IY +        N D  NDLY  +
Sbjct: 69  NSTQK-----LAFIDSVQRLGVSYHFTKEIEDELENIYHN--------NNDAENDLYTTS 115
Query: 127 LRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEAC 186
           +RFRLLR+HGY VS D+F KF+DE+G FK+ +T+D +GLL LY+ASYLRV GE+IL+EA 
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175
Query: 187 EFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILEL 246
            F              PL ++V H+L+  + RG+PR+EAR Y+S+Y+ D  + N+ +LE 
Sbjct: 176 SFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQ-DIESHNKALLEF 234
Query: 247 AKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANELPKY---- 296
           AK+DFN+LQ LHR ELSEI RWWKD+DF  KLP+ARDR      W +      P+Y    
Sbjct: 235 AKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGR 293
Query: 297 -MQVCYFALLDVVKEMEDKLVNKEPLC------------CM----YYAKEAIKGLV---- 335
            M     A+  +V +  D     E L             C+     Y K + K L+    
Sbjct: 294 KMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYE 353
Query: 336 --------------------------KAYFVEAKWFHAKYVPTFEECVENSTMSSGYPML 369
                                     ++Y VEAKW    Y P+FEE   N+  + GY ML
Sbjct: 354 EMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAML 413
Query: 370 AVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECY 429
           A+ + VG+ D+ +T     WA S PKII++S++I R  DDV  +K +  R D  S++ECY
Sbjct: 414 AITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECY 472
Query: 430 VQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDG 489
           +++YGV+ +EA +     VE  W ++N+E   P   P + L  SLNLAR+M VLY+ GDG
Sbjct: 473 MEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDG 532
Query: 490 YTNSTGKTKDRIASLLVDPLPM 511
           YT      K  I SLL++P+ +
Sbjct: 533 YTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-153
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-153
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-151
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-150
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-149
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-146
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-127
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-123
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-120
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 5e-04
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 7e-63
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-18
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 3e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-07
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-06
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 8e-05
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
 Score =  448 bits (1153), Expect = e-153
 Identities = 170/559 (30%), Positives = 269/559 (48%), Gaps = 68/559 (12%)

Query: 9   SSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNT 68
           S          RRS++Y P+ W   F+  SS+   +    + + + L+AE+ +    NN 
Sbjct: 4   SHHHHHHGSEARRSADYEPNSWDYDFLL-SSDTDESIEVYKDKAKKLEAEVRR--EINNE 60

Query: 69  AWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALR 128
             + L  +  I + +QRLG+ Y FE++I+ AL     S        +      L+  AL 
Sbjct: 61  KAEFLTLLELI-DNVQRLGLGYRFESDIRRALDRFVSSGGF-----DGVTKTSLHATALS 114

Query: 129 FRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEF 188
           FRLLRQHG++VS + F  F+D+ G F   L  D K +L LYEAS+L ++GENIL+EA  F
Sbjct: 115 FRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVF 174

Query: 189 SRKHLKSLL-SHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELA 247
           +  HLK L    +   L +QV H+LE+PLHR   RLEA   I  Y       N+++LELA
Sbjct: 175 AISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKED-ANQVLLELA 233

Query: 248 KLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR-----WEVVAANELPKY------ 296
            LD+N++Q++++ +L E SRWW+ +  ATKL FARDR     +  V     P+Y      
Sbjct: 234 ILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNS 293

Query: 297 ---------------------------------------------MQVCYFALLDVVKEM 311
                                                        M++C+ AL + + E+
Sbjct: 294 VAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEI 353

Query: 312 EDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAV 371
               +  +    + Y  +A   L  A+  EAKW + K  PTF++   N+  SS  P+  +
Sbjct: 354 AYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLI 413

Query: 372 EALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQ 431
            A   +    I K  ++       II   S I RL +D+ +   E  RG+  +SV CY++
Sbjct: 414 FAYFAVVQN-IKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMR 472

Query: 432 QYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYT 491
             G+SEE A   +  +++  W  +N+E    +     ++  ++NLAR     Y NGD +T
Sbjct: 473 TKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHT 532

Query: 492 NSTGKTKDRIASLLVDPLP 510
           +    T+ R+ S++ +P+ 
Sbjct: 533 SPDELTRKRVLSVITEPIL 551
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.93
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.54
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 80.1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.3e-152  Score=1234.89  Aligned_cols=482  Identities=46%  Similarity=0.840  Sum_probs=442.2

Q ss_pred             CcccccCCCCCCCCCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHHhc-cccCccCHHHHHHHHHHHHHhCcccCc
Q 010399           14 TKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHF   92 (511)
Q Consensus        14 ~~~~~~r~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~-~~~~~~d~~~~L~lID~lqrLGi~~hF   92 (511)
                      ++.++.||+||||||+|||+||++ + +++..+.+.+|+++||++||+||.. .+    |++++|+|||+||||||+|||
T Consensus        16 ~~~~~~R~~~~~~ps~W~~~fl~~-~-~~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~l~lID~lqrLGi~~hF   89 (554)
T 3g4d_A           16 SNKDEMRPKADFQPSIWGDLFLNC-P-DKNIDAETEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYHF   89 (554)
T ss_dssp             ---------CCCCCCTTTTTTTSC-C-C---CHHHHHHHHHHHHHHHHHHHSCCS----SHHHHHHHHHHHHHTTCGGGC
T ss_pred             ccCCCCCCCCCCCccccccccccC-C-CchhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhh
Confidence            345568999999999999999997 4 3455678999999999999999975 45    899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCCCCchHHHHHHHHHHhhcCcccchhhhhcccccccccccccccchhhhhhhhhhc
Q 010399           93 ENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEAS  172 (511)
Q Consensus        93 e~EI~~~L~~i~~~~~~~~~~~~~~~~~dL~~~al~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS  172 (511)
                      ++||+++|++||++  ++     .. ..|||+|||+|||||||||+||||||++|+|++|+|++++.+||+|||+|||||
T Consensus        90 ~~EI~~~L~~i~~~--~~-----~~-~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs  161 (554)
T 3g4d_A           90 TKEIEDELENIYHN--NN-----DA-ENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQAS  161 (554)
T ss_dssp             HHHHHHHHHHHHHS--CC-----CT-TCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--cC-----CC-CCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHH
Confidence            99999999999985  21     11 369999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCccHHHHHHHHHHHHHHhHhhcCCCchHHHHHHhccCccccCcchHHHHhhHHHhhcCCccccHHHHHHHHHhhH
Q 010399          173 YLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN  252 (511)
Q Consensus       173 ~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn  252 (511)
                      ||++|||+|||||+.||++||++.+++++++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus       162 ~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn  240 (554)
T 3g4d_A          162 YLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ESHNKALLEFAKIDFN  240 (554)
T ss_dssp             TTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TTCCHHHHHHHHHHHH
T ss_pred             hCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-ccccHHHHHHHHHHHH
Confidence            999999999999999999999998888888999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccccc------------------------------------------------
Q 010399          253 LLQALHRIELSEISRWWKDIDFATKLPFARDR------------------------------------------------  284 (511)
Q Consensus       253 ~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR------------------------------------------------  284 (511)
                      +||++||+||++|+||||++||+++|||||||                                                
T Consensus       241 ~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~  320 (554)
T 3g4d_A          241 MLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELI  320 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            99999999999999999999999999999999                                                


Q ss_pred             --------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Q 010399          285 --------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC  356 (511)
Q Consensus       285 --------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k~~~~~~~~~lkk~w~~l~~ayl~EAkW~~~g~vPtleEY  356 (511)
                              ||++++++||+|||+||++|+|++|||++++.++|+.++++|++++|+++++||++||+|+++||+||+|||
T Consensus       321 ~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEY  400 (554)
T 3g4d_A          321 PYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEF  400 (554)
T ss_dssp             HHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence                    999999999999999999999999999999998544389999999999999999999999999999999999


Q ss_pred             HhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCCCcchhhHHHHcCCCC
Q 010399          357 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVS  436 (511)
Q Consensus       357 l~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGdv~n~V~cyMke~gvS  436 (511)
                      |+||.+|+|+++++++++++||+. +|+++++|++++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|
T Consensus       401 l~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvS  479 (554)
T 3g4d_A          401 KANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVT  479 (554)
T ss_dssp             HHHHGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCC
T ss_pred             HhccceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCC
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhhcccCCC
Q 010399          437 EEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM  511 (511)
Q Consensus       437 ~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~Pi~~  511 (511)
                      +|||+++++++|+++||+||++|++++++|++|+++++|+||+++|||+++||||.|+..||++|++||++|||+
T Consensus       480 eEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          480 AQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999988999999999999999999999999999999778999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 511
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 2e-90
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 3e-80
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-71
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 2e-70
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 4e-31
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 8e-22
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  277 bits (711), Expect = 2e-90
 Identities = 85/327 (25%), Positives = 144/327 (44%), Gaps = 58/327 (17%)

Query: 240 NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR------WEVVAANEL 293
           N LI ELAKL+FN++QA H+ EL ++SRWW  + F  KLPF RDR      W  V   E 
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFW-AVGMFEP 60

Query: 294 PKY---------------MQVCYF------------------------------------ 302
            ++               +    +                                    
Sbjct: 61  HQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYW 120

Query: 303 ALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTM 362
            + + + +    ++ +    C+ Y ++++  LV+AYF EAKW+H+ Y P+ +E +  + +
Sbjct: 121 GVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 180

Query: 363 SSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDA 422
           S   P +         + +     +D       I+  + +I RL DD+ T   E  RGD 
Sbjct: 181 SVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV 240

Query: 423 PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVV 482
           P +++CY+++   SEEEA   +K ++   W ++N  I      P   +  + N+ R+   
Sbjct: 241 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQF 300

Query: 483 LYQNGDGYTNSTGKTKDRIASLLVDPL 509
           +Y +GDG+     KT + IA LL +P 
Sbjct: 301 IYLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 99.94
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.8
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 98.81
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=6.2e-82  Score=646.21  Aligned_cols=271  Identities=33%  Similarity=0.657  Sum_probs=250.5

Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccccccccccc----------------------------------
Q 010399          239 RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDR----------------------------------  284 (511)
Q Consensus       239 ~n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~~~l~~~L~faRdR----------------------------------  284 (511)
                      +|++||||||||||+||++||+||++|+||||++||.++|||||||                                  
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            5999999999999999999999999999999999999999999999                                  


Q ss_pred             ----------------------ccchhhhhCChhHHHHHHHHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHHHHHHHH
Q 010399          285 ----------------------WEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVE  341 (511)
Q Consensus       285 ----------------------WD~~~~~~LPeymK~~f~al~~~~~eie~~~~k-~~~~~~~~~lkk~w~~l~~ayl~E  341 (511)
                                            ||++++++||+|||+||.+|+++++|+++++.+ +|+ ++++|++++|++++++|++|
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~-~~~~~lk~~w~~l~~ayl~E  159 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVEAYFHE  159 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHH
Confidence                                  999999999999999999999999999999888 777 99999999999999999999


Q ss_pred             HHHhhCCCCCCHHHHHhhcccccchhhHHHHHHHhcCCCcCcHHHHhhccchhHHHHHhhhHhhhccCccchhhHhhcCC
Q 010399          342 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD  421 (511)
Q Consensus       342 AkW~~~g~vPtleEYl~~~~vSsg~~~~~~~~~~~mg~~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDI~S~k~E~~rGd  421 (511)
                      |+|+++||+||+||||+||.+|+|+++++++++++||....++++++|+.++|+++++++.|+||+|||+||++|++||+
T Consensus       160 akW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~  239 (328)
T d1n1ba2         160 AKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGD  239 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------C
T ss_pred             HHHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCC
Confidence            99999999999999999999999999999999999998724566899999999999999999999999999999999999


Q ss_pred             CcchhhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHH
Q 010399          422 APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRI  501 (511)
Q Consensus       422 v~n~V~cyMke~gvS~EeA~~~i~~~Ie~~wk~ln~e~l~~~~vp~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I  501 (511)
                      ++|+|+|||+|+|+|+|||+++++++|+++||++|+++++++++|++|+++++|+||+++++|+++||||+|++.||++|
T Consensus       240 ~~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~k~~I  319 (328)
T d1n1ba2         240 VPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHI  319 (328)
T ss_dssp             CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHH
T ss_pred             cchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999977899999


Q ss_pred             HhhhcccCC
Q 010399          502 ASLLVDPLP  510 (511)
Q Consensus       502 ~~ll~~Pi~  510 (511)
                      ++||++||.
T Consensus       320 ~~ll~ePvs  328 (328)
T d1n1ba2         320 AGLLFEPYA  328 (328)
T ss_dssp             HHHHTSCCC
T ss_pred             HHHhccCCC
Confidence            999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure