Citrus Sinensis ID: 010403

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
ccccccccccccccccccccccEEEccccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccccccccEEEEEEEEEEEcccccHHHHHHHHHHccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccEEEEEEccccccccccEEEcccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccEEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccEEEEEEEEcccccccEEccccccccccccccccccccEEEEcccccccHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccEEEEcccccccccccccccEEEEccHHHHHHHHHccEEcccccccc
ccccccccccccEEEEcccEEEEEEccHHHHccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHcEEcccccccccEEEEEEHEEEEccccHHHHHHHHHcccccccccccccEEEEEccccccccHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccHHccccccEEEEccccHHHHHHHccEEEEccHHHHHHHHHcccEEEEccEEEEEEEEccccccccHHHHHHHHHHHHcccccEcEEEEEEcHHHHHccHHHHHHHHHHHHHHcEcEEEccccHHHHHHHcccccccccccccccccEEcEEEEEEHHccccEEEccccccccEEcccccccEEEEEEEEccccccHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHcccccccccHHHHHHHHccccccccccccHHcccccccccccccccEEEEccccccccccccccccEEcccHHHHHHHHHHcccccHHHHHc
massvispaptssfinnkkdlgsfcfsstsqfsvnkcKKLAVSKKIVSVmapqqserrpattgsvkNAMTLTEKIFSrasekpqlspgdnvWVNVDILMthdvcgpgsfgifkkefgenakvwdrekiviipdhyiftsderanRNVDILRDFCMEQNIKYFYDIKdlgnfkanpdykgvCHIALaqeghcrpgevllgtdshtctagafgqfatgigntdagfvlgtgkvllkvpptlrfvldgempdyLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEaggkngvvpadgttfkyledktslpyepvysdekasflseyrfdiskleplvakphspdnralareckdvkidrvyigsctggktEDFLAAAKVFLAsgkkvkvptflvpatqkvwmdvytlpvpgsggktcSQIFeeagcdtpaspscgaclggpkdtyarmnepmvcvsttnrnfpgrmghkegqiylaspytAAASAltgyvtdprefle
massvispaptssfinnkkDLGSFCFSSTSQFSVNKCKKLAVSKKIVsvmapqqserrpattgsvknAMTLTEKIFsrasekpqlspgDNVWVNVDILMTHDVCGPGSFGIFKKEFgenakvwdrekiviipdhyiftsderanRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEplvakphspdnralareckdvkiDRVYIGSCTGGKTEDFLAAAKVFLasgkkvkvptflvpatqkvwMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
********************LGSFCFSSTSQFSVNKCKKLAVSKKIV*****************************************DNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLV*********ALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV********
*************FINNKKDLGSFCFS*******************************************LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
*********PTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVM**************VKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
******SPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQS*****TT*SVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query511 2.2.26 [Sep-21-2011]
Q94AR8509 3-isopropylmalate dehydra yes no 0.994 0.998 0.813 0.0
P81291424 Isopropylmalate/citramala yes no 0.816 0.983 0.430 2e-97
Q8TVF2418 3-isopropylmalate dehydra yes no 0.812 0.992 0.428 5e-92
O67078432 3-isopropylmalate dehydra yes no 0.818 0.967 0.388 3e-90
B0TCR2420 3-isopropylmalate dehydra yes no 0.810 0.985 0.393 4e-90
Q8TQZ3420 3-isopropylmalate dehydra yes no 0.808 0.983 0.410 1e-87
Q2LWJ2420 3-isopropylmalate dehydra yes no 0.816 0.992 0.396 4e-87
Q8PUG1420 3-isopropylmalate dehydra yes no 0.808 0.983 0.403 8e-87
B8CX22420 3-isopropylmalate dehydra yes no 0.816 0.992 0.395 1e-86
O28316418 3-isopropylmalate dehydra yes no 0.810 0.990 0.396 1e-86
>sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/509 (81%), Positives = 465/509 (91%), Gaps = 1/509 (0%)

Query: 3   SSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATT 62
           +SVIS +P     ++K DLG   F  +SQ S+++C+K ++S+KIVSVMAPQ+ +R P TT
Sbjct: 2   ASVISSSPFLCKSSSKSDLGISSFPKSSQISIHRCQKKSISRKIVSVMAPQK-DRSPGTT 60

Query: 63  GSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKV 122
           GSVK  MT+TEKI +RASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKV
Sbjct: 61  GSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKV 120

Query: 123 WDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCH 182
           WD EKIV+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH
Sbjct: 121 WDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCH 180

Query: 183 IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFV 242
           +ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+
Sbjct: 181 VALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFI 240

Query: 243 LDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 302
           LDGEMP YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGK
Sbjct: 241 LDGEMPSYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGK 300

Query: 303 NGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALA 362
           NGV+P D TT  Y+E++TS+P+EPVYSD  ASF+++YRFD+SKLEP+VAKPHSPDNRALA
Sbjct: 301 NGVIPPDATTLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKLEPVVAKPHSPDNRALA 360

Query: 363 RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPV 422
           RECKDVKIDRVYIGSCTGGKTEDF+AAAK+F A+G+KVKVPTFLVPATQKVWMDVY LPV
Sbjct: 361 RECKDVKIDRVYIGSCTGGKTEDFMAAAKLFHAAGRKVKVPTFLVPATQKVWMDVYALPV 420

Query: 423 PGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHK 482
           PG+GGKTC+QIFEEAGCDTPASPSCGACLGGP DTYAR+NEP VCVSTTNRNFPGRMGHK
Sbjct: 421 PGAGGKTCAQIFEEAGCDTPASPSCGACLGGPADTYARLNEPQVCVSTTNRNFPGRMGHK 480

Query: 483 EGQIYLASPYTAAASALTGYVTDPREFLE 511
           EGQIYLASPYTAAASALTG V DPREFL+
Sbjct: 481 EGQIYLASPYTAAASALTGRVADPREFLQ 509
Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 3
>sp|P81291|LEUC_METJA Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=leuC PE=1 SV=1 Back     alignment and function description
>sp|Q8TVF2|LEUC1_METKA 3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=leuC1 PE=3 SV=1 Back     alignment and function description
>sp|O67078|LEUC_AQUAE 3-isopropylmalate dehydratase large subunit OS=Aquifex aeolicus (strain VF5) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|B0TCR2|LEUC_HELMI 3-isopropylmalate dehydratase large subunit OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|Q8TQZ3|LEUC2_METAC 3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=leuC2 PE=3 SV=1 Back     alignment and function description
>sp|Q2LWJ2|LEUC_SYNAS 3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|Q8PUG1|LEUC2_METMA 3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=leuC2 PE=3 SV=2 Back     alignment and function description
>sp|B8CX22|LEUC_HALOH 3-isopropylmalate dehydratase large subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|O28316|LEUC1_ARCFU 3-isopropylmalate dehydratase large subunit 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=leuC1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
255574875510 3-isopropylmalate dehydratase, putative 0.964 0.966 0.903 0.0
225439231508 PREDICTED: 3-isopropylmalate dehydratase 0.917 0.923 0.923 0.0
224110650462 predicted protein [Populus trichocarpa] 0.904 1.0 0.932 0.0
225433279508 PREDICTED: 3-isopropylmalate dehydratase 0.992 0.998 0.872 0.0
356562389502 PREDICTED: 3-isopropylmalate dehydratase 0.978 0.996 0.857 0.0
356553399500 PREDICTED: 3-isopropylmalate dehydratase 0.974 0.996 0.861 0.0
296085913528 unnamed protein product [Vitis vinifera] 0.917 0.888 0.885 0.0
357439825505 3-isopropylmalate dehydratase [Medicago 0.988 1.0 0.841 0.0
449461279510 PREDICTED: 3-isopropylmalate dehydratase 0.972 0.974 0.845 0.0
18414006509 3-isopropylmalate dehydratase [Arabidops 0.994 0.998 0.813 0.0
>gi|255574875|ref|XP_002528344.1| 3-isopropylmalate dehydratase, putative [Ricinus communis] gi|223532212|gb|EEF34016.1| 3-isopropylmalate dehydratase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/496 (90%), Positives = 474/496 (95%), Gaps = 3/496 (0%)

Query: 18  KKDLGSFCFSSTSQ--FSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKI 75
           KKDLG   FSS S   +S+ KCKK ++SKK+VSVMAPQQSER PATTGSVK AMT+TEKI
Sbjct: 16  KKDLGLSAFSSQSSPFYSIPKCKK-SISKKVVSVMAPQQSERTPATTGSVKTAMTMTEKI 74

Query: 76  FSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHY 135
            +RASEK QLSPG+NVWVNVD+LMTHDVCGPGS GIFK+EFG+NA VWDREKIVIIPDHY
Sbjct: 75  LARASEKSQLSPGENVWVNVDVLMTHDVCGPGSIGIFKREFGQNATVWDREKIVIIPDHY 134

Query: 136 IFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGE 195
           IFT+DERANRNVDILRDFC EQN+KYFYDIKDL NFK NPDYKGVCH+ALAQEGHCRPGE
Sbjct: 135 IFTTDERANRNVDILRDFCQEQNVKYFYDIKDLSNFKVNPDYKGVCHVALAQEGHCRPGE 194

Query: 196 VLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 255
           VLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPTLRFV+DGEMPDYLLAKD
Sbjct: 195 VLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLRFVMDGEMPDYLLAKD 254

Query: 256 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKY 315
           LILQIIGEISV+GATYKSMEFVGTTVE L+MEERMTLCNMVVEAGGKNGV+P+D TTFKY
Sbjct: 255 LILQIIGEISVSGATYKSMEFVGTTVESLNMEERMTLCNMVVEAGGKNGVIPSDSTTFKY 314

Query: 316 LEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYI 375
           LEDKTS+P+EPVYSDEKA FLSEYRFD+SKLEPLVAKPHSPDN ALARECKDVKIDRVYI
Sbjct: 315 LEDKTSVPFEPVYSDEKARFLSEYRFDVSKLEPLVAKPHSPDNCALARECKDVKIDRVYI 374

Query: 376 GSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFE 435
           GSCTGGKTEDF+AAAKVFLASGKKVKVPTFLVPATQKVWMDVY+LPVPGSGGKTCSQIFE
Sbjct: 375 GSCTGGKTEDFMAAAKVFLASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGKTCSQIFE 434

Query: 436 EAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAA 495
           EAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAA
Sbjct: 435 EAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAA 494

Query: 496 ASALTGYVTDPREFLE 511
           ASALTGYVTDPREFL+
Sbjct: 495 ASALTGYVTDPREFLQ 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439231|ref|XP_002271046.1| PREDICTED: 3-isopropylmalate dehydratase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224110650|ref|XP_002315591.1| predicted protein [Populus trichocarpa] gi|222864631|gb|EEF01762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225433279|ref|XP_002285491.1| PREDICTED: 3-isopropylmalate dehydratase [Vitis vinifera] gi|296083736|emb|CBI23725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356562389|ref|XP_003549454.1| PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max] Back     alignment and taxonomy information
>gi|356553399|ref|XP_003545044.1| PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max] Back     alignment and taxonomy information
>gi|296085913|emb|CBI31237.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357439825|ref|XP_003590190.1| 3-isopropylmalate dehydratase [Medicago truncatula] gi|355479238|gb|AES60441.1| 3-isopropylmalate dehydratase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449461279|ref|XP_004148369.1| PREDICTED: 3-isopropylmalate dehydratase-like [Cucumis sativus] gi|449505250|ref|XP_004162416.1| PREDICTED: 3-isopropylmalate dehydratase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18414006|ref|NP_567405.1| 3-isopropylmalate dehydratase [Arabidopsis thaliana] gi|75249794|sp|Q94AR8.1|LEUC_ARATH RecName: Full=3-isopropylmalate dehydratase; AltName: Full=Isopropylmalate isomerase large subunit 1; Short=AtIIL1; Flags: Precursor gi|15027971|gb|AAK76516.1| unknown protein [Arabidopsis thaliana] gi|21436051|gb|AAM51226.1| unknown protein [Arabidopsis thaliana] gi|332657878|gb|AEE83278.1| 3-isopropylmalate dehydratase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
TAIR|locus:2142120509 IIL1 "isopropyl malate isomera 0.994 0.998 0.813 3.9e-234
TIGR_CMR|CHY_0522421 CHY_0522 "3-isopropylmalate de 0.808 0.980 0.396 1.7e-82
TIGR_CMR|DET_0828416 DET_0828 "3-isopropylmalate de 0.808 0.992 0.407 7.4e-82
UNIPROTKB|Q0QLE2420 dmdA "2,3-dimethylmalate dehyd 0.810 0.985 0.397 7.9e-78
TIGR_CMR|DET_0448417 DET_0448 "homoaconitate hydrat 0.804 0.985 0.391 1.2e-72
UNIPROTKB|Q3AD33417 leuC "3-isopropylmalate dehydr 0.804 0.985 0.380 3.2e-72
TIGR_CMR|CHY_1105417 CHY_1105 "3-isopropylmalate de 0.804 0.985 0.380 3.2e-72
TIGR_CMR|GSU_1903427 GSU_1903 "3-isopropylmalate de 0.800 0.957 0.392 1.3e-68
UNIPROTKB|Q9KP81467 leuC "3-isopropylmalate dehydr 0.555 0.608 0.292 3.6e-47
TIGR_CMR|VC_2492467 VC_2492 "3-isopropylmalate deh 0.555 0.608 0.292 3.6e-47
TAIR|locus:2142120 IIL1 "isopropyl malate isomerase large subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2258 (799.9 bits), Expect = 3.9e-234, P = 3.9e-234
 Identities = 414/509 (81%), Positives = 465/509 (91%)

Query:     3 SSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATT 62
             +SVIS +P     ++K DLG   F  +SQ S+++C+K ++S+KIVSVMAPQ+ +R P TT
Sbjct:     2 ASVISSSPFLCKSSSKSDLGISSFPKSSQISIHRCQKKSISRKIVSVMAPQK-DRSPGTT 60

Query:    63 GSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKV 122
             GSVK  MT+TEKI +RASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKV
Sbjct:    61 GSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKV 120

Query:   123 WDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCH 182
             WD EKIV+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH
Sbjct:   121 WDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCH 180

Query:   183 IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFV 242
             +ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+
Sbjct:   181 VALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFI 240

Query:   243 LDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 302
             LDGEMP YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGK
Sbjct:   241 LDGEMPSYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGK 300

Query:   303 NGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALA 362
             NGV+P D TT  Y+E++TS+P+EPVYSD  ASF+++YRFD+SKLEP+VAKPHSPDNRALA
Sbjct:   301 NGVIPPDATTLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKLEPVVAKPHSPDNRALA 360

Query:   363 RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPV 422
             RECKDVKIDRVYIGSCTGGKTEDF+AAAK+F A+G+KVKVPTFLVPATQKVWMDVY LPV
Sbjct:   361 RECKDVKIDRVYIGSCTGGKTEDFMAAAKLFHAAGRKVKVPTFLVPATQKVWMDVYALPV 420

Query:   423 PGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHK 482
             PG+GGKTC+QIFEEAGCDTPASPSCGACLGGP DTYAR+NEP VCVSTTNRNFPGRMGHK
Sbjct:   421 PGAGGKTCAQIFEEAGCDTPASPSCGACLGGPADTYARLNEPQVCVSTTNRNFPGRMGHK 480

Query:   483 EGQIYLASPYTAAASALTGYVTDPREFLE 511
             EGQIYLASPYTAAASALTG V DPREFL+
Sbjct:   481 EGQIYLASPYTAAASALTGRVADPREFLQ 509
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0016829 "lyase activity" evidence=ISS
GO:0016836 "hydro-lyase activity" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP
GO:0050486 "intramolecular transferase activity, transferring hydroxy groups" evidence=IMP
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0009536 "plastid" evidence=IDA
TIGR_CMR|CHY_0522 CHY_0522 "3-isopropylmalate dehydratase, large subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0828 DET_0828 "3-isopropylmalate dehydratase, large subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q0QLE2 dmdA "2,3-dimethylmalate dehydratase large subunit" [Eubacterium barkeri (taxid:1528)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0448 DET_0448 "homoaconitate hydratase family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AD33 leuC "3-isopropylmalate dehydratase large subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1105 CHY_1105 "3-isopropylmalate dehydratase, large subunit family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1903 GSU_1903 "3-isopropylmalate dehydratase, large subunit, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KP81 leuC "3-isopropylmalate dehydratase large subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2492 VC_2492 "3-isopropylmalate dehydratase, large subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8EQZ0LEUC_ARCB44, ., 2, ., 1, ., 3, 30.39330.80820.9694yesno
A6Q5L6LEUC_NITSB4, ., 2, ., 1, ., 3, 30.40130.80620.9786yesno
Q18AJ2LEUC_CLOD64, ., 2, ., 1, ., 3, 30.38660.81600.9811yesno
Q8PUG1LEUC2_METMA4, ., 2, ., 1, ., 3, 30.40350.80820.9833yesno
A3DHI4LEUC_CLOTH4, ., 2, ., 1, ., 3, 30.39630.81400.9928yesno
A0RMG7LEUC_CAMFF4, ., 2, ., 1, ., 3, 30.39410.80230.9738yesno
Q2RG98LEUC_MOOTA4, ., 2, ., 1, ., 3, 30.38870.81600.9904yesno
Q8U2A1LEUC1_PYRFU4, ., 2, ., 1, ., 3, 30.40490.81600.9834yesno
Q2LWJ2LEUC_SYNAS4, ., 2, ., 1, ., 3, 30.39680.81600.9928yesno
B2TIQ9LEUC_CLOBB4, ., 2, ., 1, ., 3, 30.39140.81010.9880yesno
B0K0Y2LEUC_THEPX4, ., 2, ., 1, ., 3, 30.38140.80820.9880yesno
B2UYH6LEUC_CLOBA4, ., 2, ., 1, ., 3, 30.39590.81010.9880yesno
A6LPX4LEUC_CLOB84, ., 2, ., 1, ., 3, 30.40490.81010.9880yesno
Q8RDK2LEUC_THETN4, ., 2, ., 1, ., 3, 30.38000.80620.9856yesno
Q8TVF2LEUC1_METKA4, ., 2, ., 1, ., 3, 30.42850.81210.9928yesno
A7H0L8LEUC_CAMC54, ., 2, ., 1, ., 3, 30.39230.80620.9786yesno
B9L6Y8LEUC_NAUPA4, ., 2, ., 1, ., 3, 30.38050.80620.9694yesno
O67078LEUC_AQUAE4, ., 2, ., 1, ., 3, 30.38830.81800.9675yesno
B9MLV4LEUC_CALBD4, ., 2, ., 1, ., 3, 30.38280.81210.9673yesno
B8CX22LEUC_HALOH4, ., 2, ., 1, ., 3, 30.39550.81600.9928yesno
A4XJ48LEUC_CALS84, ., 2, ., 1, ., 3, 30.39180.81210.9673yesno
O27439LEUC1_METTH4, ., 2, ., 1, ., 3, 30.41450.81010.9880yesno
B0KAH5LEUC_THEP34, ., 2, ., 1, ., 3, 30.38140.80820.9904yesno
Q726X4LEUC_DESVH4, ., 2, ., 1, ., 3, 30.37780.80620.9832yesno
Q97EE0LEUC_CLOAB4, ., 2, ., 1, ., 3, 30.36990.82581.0yesno
A7ZFP0LEUC_CAMC14, ., 2, ., 1, ., 3, 30.38340.80620.9786yesno
P81291LEUC_METJA4, ., 2, ., 1, ., 3, 10.43080.81600.9834yesno
A1VAE7LEUC_DESVV4, ., 2, ., 1, ., 3, 30.37780.80620.9832yesno
B5YKE0LEUC_THEYD4, ., 2, ., 1, ., 3, 30.37690.81210.9857yesno
Q24XT4LEUC_DESHY4, ., 2, ., 1, ., 3, 30.38340.81600.9904yesno
B1H0A6LEUC_UNCTG4, ., 2, ., 1, ., 3, 30.39360.81210.9880yesno
O28316LEUC1_ARCFU4, ., 2, ., 1, ., 3, 30.39630.81010.9904yesno
Q9WZ24LEUC2_THEMA4, ., 2, ., 1, ., 3, 30.39410.81010.9928yesno
Q7M9Z9LEUC_WOLSU4, ., 2, ., 1, ., 3, 30.39460.80820.9786yesno
A6Q6J8LEUC_SULNB4, ., 2, ., 1, ., 3, 30.38660.80820.9694yesno
Q8TQZ3LEUC2_METAC4, ., 2, ., 1, ., 3, 30.41030.80820.9833yesno
A7IA28LEUC_METB64, ., 2, ., 1, ., 3, 30.37810.80620.9903yesno
B0TCR2LEUC_HELMI4, ., 2, ., 1, ., 3, 30.39360.81010.9857yesno
A9KT79LEUC_CLOPH4, ., 2, ., 1, ., 3, 30.38510.81400.9881yesno
Q9UZ07LEUC1_PYRAB4, ., 2, ., 1, ., 3, 30.38470.81600.9858yesno
Q94AR8LEUC_ARATH4, ., 2, ., 1, ., 3, 30.81330.99410.9980yesno
Q30NZ0LEUC_SULDN4, ., 2, ., 1, ., 3, 30.38340.80620.9832yesno
A5MZ75LEUC_CLOK54, ., 2, ., 1, ., 3, 30.38650.81600.9928yesno
B4U7U5LEUC_HYDS04, ., 2, ., 1, ., 3, 30.37640.80620.9716yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.998
3rd Layer4.2.1.330.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
cd01583382 cd01583, IPMI, 3-isopropylmalate dehydratase catal 0.0
PRK00402418 PRK00402, PRK00402, 3-isopropylmalate dehydratase 0.0
COG0065423 COG0065, LeuC, 3-isopropylmalate dehydratase large 1e-167
TIGR01343412 TIGR01343, hacA_fam, homoaconitate hydratase famil 1e-148
TIGR02086412 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratas 1e-138
TIGR02083419 TIGR02083, LEU2, 3-isopropylmalate dehydratase, la 1e-122
PRK12466471 PRK12466, PRK12466, isopropylmalate isomerase larg 3e-93
PRK05478466 PRK05478, PRK05478, isopropylmalate isomerase larg 4e-82
cd01351389 cd01351, Aconitase, Aconitase catalytic domain; Ac 1e-75
PRK07229 646 PRK07229, PRK07229, aconitate hydratase; Validated 1e-71
TIGR00170465 TIGR00170, leuC, 3-isopropylmalate dehydratase, la 5e-66
pfam00330464 pfam00330, Aconitase, Aconitase family (aconitate 1e-64
cd01585380 cd01585, AcnA_Bact, Aconitase catalyzes the revers 2e-64
TIGR01342 658 TIGR01342, acon_putative, aconitate hydratase, put 2e-62
COG1048 861 COG1048, AcnA, Aconitase A [Energy production and 7e-53
TIGR00139 712 TIGR00139, h_aconitase, homoaconitase 3e-49
cd01582363 cd01582, Homoaconitase, Homoaconitase and other un 5e-47
cd01584412 cd01584, AcnA_Mitochondrial, Aconitase catalyzes t 1e-33
TIGR01340 745 TIGR01340, aconitase_mito, aconitate hydratase, mi 6e-32
PRK09238835 PRK09238, PRK09238, bifunctional aconitate hydrata 5e-24
COG1049852 COG1049, AcnB, Aconitase B [Energy production and 1e-22
cd01581436 cd01581, AcnB, Aconitate hydratase B catalyses the 2e-20
PTZ00092 898 PTZ00092, PTZ00092, aconitate hydratase-like prote 2e-19
TIGR01341 876 TIGR01341, aconitase_1, aconitate hydratase 1 9e-19
TIGR00117844 TIGR00117, acnB, aconitate hydratase 2 2e-18
PLN00094938 PLN00094, PLN00094, aconitate hydratase 2; Provisi 1e-17
cd01586404 cd01586, AcnA_IRP, Aconitase A catalytic domain 1e-15
PRK12881 889 PRK12881, acnA, aconitate hydratase; Provisional 4e-13
TIGR02333 858 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate deh 3e-12
PLN00070 936 PLN00070, PLN00070, aconitate hydratase 5e-12
PRK11413 751 PRK11413, PRK11413, putative hydratase; Provisiona 4e-11
PRK09277 888 PRK09277, PRK09277, aconitate hydratase; Validated 5e-07
COG1803142 COG1803, MgsA, Methylglyoxal synthase [Carbohydrat 0.004
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information 
 Score =  564 bits (1455), Expect = 0.0
 Identities = 186/407 (45%), Positives = 244/407 (59%), Gaps = 25/407 (6%)

Query: 97  ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCME 156
           + + HDV  P +F   ++   E  KVWD EKIV + DH + T D +A   V  LR F  E
Sbjct: 1   LHLVHDVTSPQAFEGLREAGRE--KVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKE 58

Query: 157 QNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 216
             I  F+D+            +G+CH+ L ++G   PG  ++G DSHTCT GAFG FATG
Sbjct: 59  FGIN-FFDV----------GRQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATG 107

Query: 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEF 276
           IG TD   VL TGK+  +VP T+R  ++G++P  + AKD+IL IIG+I V GATYK+MEF
Sbjct: 108 IGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEF 167

Query: 277 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFL 336
            G  +E LSMEERMTLCNM +EAG K G+V  D TTF+YL+ +    ++ + SDE A + 
Sbjct: 168 AGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAEYD 227

Query: 337 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLAS 396
                D S+LEP VA PHSPDN     E + +KID+V+IGSCT G+ ED  AAA++    
Sbjct: 228 KVVEIDASELEPQVAWPHSPDNVVPVSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILKGR 287

Query: 397 GKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKD 456
                V   +VPA+Q+V+             +   +IF EAG +    P CGACLGG   
Sbjct: 288 KVADGVRLIVVPASQRVYKQAEK--------EGLIEIFIEAGAEVRP-PGCGACLGGHMG 338

Query: 457 TYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 503
               +     CVST+NRNF GRMG    +IYLASP TAAASA+TG +
Sbjct: 339 ---VLAPGERCVSTSNRNFKGRMGSPGARIYLASPATAAASAITGEI 382

Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. Length = 382
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein Back     alignment and domain information
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase) Back     alignment and domain information
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase Back     alignment and domain information
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial Back     alignment and domain information
>gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated Back     alignment and domain information
>gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1 Back     alignment and domain information
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2 Back     alignment and domain information
>gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional Back     alignment and domain information
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain Back     alignment and domain information
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase Back     alignment and domain information
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional Back     alignment and domain information
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|224716 COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 511
COG0065423 LeuC 3-isopropylmalate dehydratase large subunit [ 100.0
TIGR02083419 LEU2 3-isopropylmalate dehydratase, large subunit. 100.0
PRK00402418 3-isopropylmalate dehydratase large subunit; Revie 100.0
TIGR01343412 hacA_fam homoaconitate hydratase family protein. T 100.0
TIGR02086412 IPMI_arch 3-isopropylmalate dehydratase, large sub 100.0
PRK12466471 isopropylmalate isomerase large subunit; Provision 100.0
TIGR00170465 leuC 3-isopropylmalate dehydratase, large subunit. 100.0
PRK05478466 isopropylmalate isomerase large subunit; Validated 100.0
cd01583382 IPMI 3-isopropylmalate dehydratase catalyzes the i 100.0
TIGR00139 712 h_aconitase homoaconitase. Homoaconitase, aconitas 100.0
cd01585380 AcnA_Bact Aconitase catalyzes the reversible isome 100.0
TIGR01342 658 acon_putative aconitate hydratase, putative, Aquif 100.0
cd01581436 AcnB Aconitate hydratase B catalyses the formation 100.0
PRK07229 646 aconitate hydratase; Validated 100.0
PF00330465 Aconitase: Aconitase family (aconitate hydratase); 100.0
TIGR01340 745 aconitase_mito aconitate hydratase, mitochondrial. 100.0
cd01584412 AcnA_Mitochondrial Aconitase catalyzes the reversi 100.0
PRK11413 751 putative hydratase; Provisional 100.0
PRK09238835 bifunctional aconitate hydratase 2/2-methylisocitr 100.0
cd01582363 Homoaconitase Homoaconitase and other uncharacteri 100.0
TIGR00117844 acnB aconitate hydratase 2. Aconitate hydratase (a 100.0
PLN00094938 aconitate hydratase 2; Provisional 100.0
cd01351389 Aconitase Aconitase catalytic domain; Aconitase ca 100.0
PRK09277 888 aconitate hydratase; Validated 100.0
PRK12881 889 acnA aconitate hydratase; Provisional 100.0
cd01586404 AcnA_IRP Aconitase A catalytic domain. Aconitase A 100.0
TIGR01341 876 aconitase_1 aconitate hydratase 1. This model repr 100.0
PTZ00092 898 aconitate hydratase-like protein; Provisional 100.0
PLN00070 936 aconitate hydratase 100.0
TIGR02333 858 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe 100.0
COG1048 861 AcnA Aconitase A [Energy production and conversion 100.0
KOG0453 778 consensus Aconitase/homoaconitase (aconitase super 100.0
KOG0452 892 consensus RNA-binding translational regulator IRP 100.0
COG1049852 AcnB Aconitase B [Energy production and conversion 100.0
KOG0454502 consensus 3-isopropylmalate dehydratase (aconitase 100.0
KOG0454 502 consensus 3-isopropylmalate dehydratase (aconitase 99.9
PF04412400 DUF521: Protein of unknown function (DUF521); Inte 97.11
COG1679403 Predicted aconitase [General function prediction o 96.97
cd01355389 AcnX Putative Aconitase X catalytic domain. Putati 93.21
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-148  Score=1132.12  Aligned_cols=417  Identities=43%  Similarity=0.690  Sum_probs=403.9

Q ss_pred             CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCcHHHHHH
Q 010403           67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN  146 (511)
Q Consensus        67 ~~~Tl~EKIl~~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~~~~a~~  146 (511)
                      ++|||+||||++|++...+.|||.+.+++|++|+||.|+|++++.|+ +.|.  +||+|+|+++++||++|+.+.+.+++
T Consensus         1 ~~~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr-~~g~--kV~~p~k~~~~~DH~vPt~~~~~a~~   77 (423)
T COG0065           1 SAKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLR-EAGR--KVRDPEKTVATFDHNVPTPDIKAAEQ   77 (423)
T ss_pred             CCccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHH-HhCC--cccCccceEEEecCCCCCccHHHHHH
Confidence            35999999999999999899999999999999999999999999996 5774  99999999999999999999999999


Q ss_pred             HHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCcccceeccCchhHHHHHH
Q 010403          147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL  226 (511)
Q Consensus       147 ~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlGa~a~GvG~td~a~~l  226 (511)
                      ++.+|+||+++||.+|||.++          +|||||+++|+|+++||++|||+|||||||||||+||+|+|+||++.+|
T Consensus        78 ~~~lr~~~ke~Gi~~~~~~g~----------~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vl  147 (423)
T COG0065          78 QKELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVL  147 (423)
T ss_pred             HHHHHHHHHHhCCeeeecCCC----------CcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHH
Confidence            999999999999999999874          7999999999999999999999999999999999999999999999999


Q ss_pred             hcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhhhhhcccccCceeecc
Q 010403          227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV  306 (511)
Q Consensus       227 ~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~Tl~NMa~E~GA~~~i~  306 (511)
                      +||++||++||+|+|+++|+|++|||||||||+||+++|++|++|+++||+|+.+++||||+|||||||++|+|||+|||
T Consensus       148 atg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii  227 (423)
T COG0065         148 ATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGII  227 (423)
T ss_pred             HhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHhhhcCC--CCCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccccccc--eeeeeEEEecCCCCC
Q 010403          307 PADGTTFKYLEDKTS--LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--VKIDRVYIGSCTGGK  382 (511)
Q Consensus       307 ~~D~~t~~yl~~r~~--~~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~e~~~--~~Id~a~IGSCTngr  382 (511)
                      +||++|++||+.+..  ..|+.|++|+||.|+++|+||+|+|||+|+||++|||+++++|+.+  ++|||||||||||||
T Consensus       228 ~pDe~T~~Y~k~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~i~iDqVFIGSCTNgR  307 (423)
T COG0065         228 APDETTFEYLKEWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDPIKIDQVFIGSCTNGR  307 (423)
T ss_pred             CCcHhHHHHHHHHhccccccceecCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCCceeeceEEEeccCCcc
Confidence            999999999997655  6789999999999999999999999999999999999999999999  999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCcce--eeEEEecCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCcccC
Q 010403          383 TEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYAR  460 (511)
Q Consensus       383 ~eDl~~AA~iL~~~G~kv~--v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~~f~~AGa~i~~~pgCg~C~G~~~~~~g~  460 (511)
                      +|||++||+|||  |+|++  ||++|+|+|++||+||+++|        ++++|++|||+| ..||||||+|+|   +|+
T Consensus       308 ieDLr~AA~Ilk--grkva~~Vr~iVvP~S~~V~~qA~~eG--------l~~if~~AG~~~-~~pgCg~CLg~~---~gv  373 (423)
T COG0065         308 IEDLRAAAEILK--GRKVAPGVRAIVVPGSRRVKEQAEKEG--------LDKIFIEAGFEW-REPGCGPCLGMH---PGV  373 (423)
T ss_pred             HHHHHHHHHHhc--cCccCCCceEEEecCcHHHHHHHHHcc--------HHHHHHhcCcEE-cCCCCccccccC---CCc
Confidence            999999999999  99996  99999999999999999974        899999999999 599999999995   679


Q ss_pred             CCCCcEEEEecCCCCCCCCCCCCCcEEecCHHHHHHHHHcCCCCCccccc
Q 010403          461 MNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL  510 (511)
Q Consensus       461 l~~gev~vsT~NRNF~GRmG~~~a~iyLASP~tvAAsAl~G~Itdpr~~~  510 (511)
                      |++||+|+|||||||+||||++++++||+||++|||||++|+|+|||+++
T Consensus       374 L~~gE~c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~dpr~~~  423 (423)
T COG0065         374 LGPGERCASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIVDPRELL  423 (423)
T ss_pred             CCCCCEEeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEecChhhcC
Confidence            99999999999999999999999999999999999999999999999974

>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>TIGR01343 hacA_fam homoaconitate hydratase family protein Back     alignment and domain information
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>PRK12466 isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>PRK05478 isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information
>TIGR00139 h_aconitase homoaconitase Back     alignment and domain information
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle Back     alignment and domain information
>PRK07229 aconitate hydratase; Validated Back     alignment and domain information
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4 Back     alignment and domain information
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial Back     alignment and domain information
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK11413 putative hydratase; Provisional Back     alignment and domain information
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated Back     alignment and domain information
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>TIGR00117 acnB aconitate hydratase 2 Back     alignment and domain information
>PLN00094 aconitate hydratase 2; Provisional Back     alignment and domain information
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK09277 aconitate hydratase; Validated Back     alignment and domain information
>PRK12881 acnA aconitate hydratase; Provisional Back     alignment and domain information
>cd01586 AcnA_IRP Aconitase A catalytic domain Back     alignment and domain information
>TIGR01341 aconitase_1 aconitate hydratase 1 Back     alignment and domain information
>PTZ00092 aconitate hydratase-like protein; Provisional Back     alignment and domain information
>PLN00070 aconitate hydratase Back     alignment and domain information
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>COG1048 AcnA Aconitase A [Energy production and conversion] Back     alignment and domain information
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism] Back     alignment and domain information
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1049 AcnB Aconitase B [Energy production and conversion] Back     alignment and domain information
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism] Back     alignment and domain information
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins Back     alignment and domain information
>COG1679 Predicted aconitase [General function prediction only] Back     alignment and domain information
>cd01355 AcnX Putative Aconitase X catalytic domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
1nis_A 754 Crystal Structure Of Aconitase With Trans-Aconitate 3e-21
1aco_A 754 Crystal Structure Of Aconitase With Transaconitate 3e-21
1ami_A 754 Steric And Conformational Features Of The Aconitase 3e-21
1c96_A 753 S642a:citrate Complex Of Aconitase Length = 753 4e-21
1b0m_A 753 Aconitase R644q:fluorocitrate Complex Length = 753 4e-21
5acn_A 754 Structure Of Activated Aconitase. Formation Of The 4e-21
1b0j_A 754 Crystal Structure Of Aconitase With Isocitrate Leng 4e-21
1c97_A 753 S642a:isocitrate Complex Of Aconitase Length = 753 5e-21
2b3x_A 888 Structure Of An Orthorhombic Crystal Form Of Human 4e-15
3snp_A 908 Crystal Structure Analysis Of Iron Regulatory Prote 3e-10
1l5j_A865 Crystal Structure Of E. Coli Aconitase B. Length = 1e-07
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And Nitrocitrate Bound Length = 754 Back     alignment and structure 
Iteration: 1

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
           G+ H  +  E +  PG +L+GTDSHT   G  G    G+G  DA  V+      LK P  
Sbjct: 144 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 202
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
           +   L G +  +   KD+IL++ G ++V G T   +E+ G  V+ +S     T+CNM  E
Sbjct: 203 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 262
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
            G    V P +    KYL      D  +L  E    +  D    +      ++S+L+P +
Sbjct: 263 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHI 322
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 399
             P +PD             +E   + I    IGSCT    ED     A AK  LA G K
Sbjct: 323 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 382
Query: 400 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 459
            K    + P ++++   +             +Q+  + G    A+ +CG C+G       
Sbjct: 383 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 433
Query: 460 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 501
           +  E    V++ NRNF GR   + E   ++ SP    A A+ G
Sbjct: 434 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 476
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound Length = 754 Back     alignment and structure
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase Mechanism Length = 754 Back     alignment and structure
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex Length = 753 Back     alignment and structure
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The (4fe-4s) Cluster In The Crystal Length = 754 Back     alignment and structure
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate Length = 754 Back     alignment and structure
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1) Length = 888 Back     alignment and structure
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In Complex With Ferritin H Ire Rna Length = 908 Back     alignment and structure
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B. Length = 865 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
1l5j_A865 Aconitate hydratase 2; molecular recognition, RNA 1e-116
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 3e-65
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865 Back     alignment and structure
 Score =  361 bits (927), Expect = e-116
 Identities = 98/500 (19%), Positives = 161/500 (32%), Gaps = 86/500 (17%)

Query: 57  RRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEF 116
           R+           +L +K+  RA     + PG      +  + + D  GP +    K   
Sbjct: 370 RQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDL- 428

Query: 117 GENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPD 176
                 +  + ++    H               L DF M +                   
Sbjct: 429 --ACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRP------------ 474

Query: 177 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVP 236
             GV H  L       P  V  G DSHT         +   G+    F   TG + L +P
Sbjct: 475 GDGVIHSWL--NRMLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMP 529

Query: 237 PTLRFVLDGEMPDYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSM 286
            ++     G+M   +  +DL+  I       G            +         +  L +
Sbjct: 530 ESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKV 589

Query: 287 EERMTLCNMVVEAGGKNGVVPADG-TTFKYLEDKTSL----------------------- 322
           E+   L +   E       +  +     +YL     L                       
Sbjct: 590 EQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGME 649

Query: 323 ----PYEPVYSDEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGS 377
                 E + +D  A + +    D++ + EP++  P+ PD+       +  KID V+IGS
Sbjct: 650 KWLANPELLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGS 709

Query: 378 CTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDV----YTLPVPGSGGKTCS 431
           C       F AA K+      K       ++ P T+     +    Y             
Sbjct: 710 CMTNI-GHFRAAGKLL--DAHKGQLPTRLWVAPPTRMDAAQLTEEGYY------------ 754

Query: 432 QIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASP 491
            +F ++G      P C  C+G      AR+ +    VST+ RNFP R+G     ++LAS 
Sbjct: 755 SVFGKSGARI-EIPGCSLCMGN----QARVADGATVVSTSTRNFPNRLG-TGANVFLASA 808

Query: 492 YTAAASALTGYVTDPREFLE 511
             AA +AL G +  P E+  
Sbjct: 809 ELAAVAALIGKLPTPEEYQT 828
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Length = 753 Back     alignment and structure
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Length = 888 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 100.0
1l5j_A865 Aconitate hydratase 2; molecular recognition, RNA 100.0
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 100.0
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Back     alignment and structure
Probab=100.00  E-value=4.9e-122  Score=1021.80  Aligned_cols=417  Identities=26%  Similarity=0.389  Sum_probs=382.1

Q ss_pred             CCCCcHHHHHHHHhcCCCC---C-CCCCeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCC--
Q 010403           66 KNAMTLTEKIFSRASEKPQ---L-SPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS--  139 (511)
Q Consensus        66 ~~~~Tl~EKIl~~~~~~~~---v-~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~--  139 (511)
                      ++||||+||||++|++...   + ++||.+.+++|++++||+|+|+++..|+. +|. .++|+|+++  ++||++|+.  
T Consensus        32 ~~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-~G~-~~v~~P~~~--~~DH~v~~~~~  107 (753)
T 1c96_A           32 NRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-SGL-PKVAVPSTI--HCDHLIEAQLG  107 (753)
T ss_dssp             CSCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-HTC-SSCSSCEEE--ECCSSCCBSSC
T ss_pred             CCCCCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHH-hCC-CCCCCCCce--ecCCCCCCCCC
Confidence            4789999999999997752   3 67899999999999999999999998964 774 579999874  799999987  


Q ss_pred             ---c-----HHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCccc
Q 010403          140 ---D-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFG  211 (511)
Q Consensus       140 ---~-----~~~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlG  211 (511)
                         +     .+..++++++|+||+++||. ||           |||+|||||+++|. +++||+++||+||||||+||||
T Consensus       108 ~~~d~~~~~~~n~e~~~~l~~~a~~~gi~-~~-----------~pg~GI~Hqv~~E~-~~~Pg~~ivGtDSHT~t~GalG  174 (753)
T 1c96_A          108 GEKDLRRAKDINQEVYNFLATAGAKYGVG-FW-----------RPGSGIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLG  174 (753)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHTCE-EE-----------CTTSBCHHHHHHHH-TCCTTCEEEESSTTGGGGGGGT
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHHCCCE-EE-----------CCCCCeeCeEeccc-ccCCCcEEecCCCCCCccchhh
Confidence               3     23447799999999999995 55           46799999998876 9999999999999999999999


Q ss_pred             ceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhh
Q 010403          212 QFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMT  291 (511)
Q Consensus       212 a~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~T  291 (511)
                      +||||||++|++.+|+++++||++||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+||||++||+++|||
T Consensus       175 ~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~T  254 (753)
T 1c96_A          175 GICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMAT  254 (753)
T ss_dssp             CEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHH
T ss_pred             hheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCccccCCcchhhh
Confidence            99999999999999998888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccCceeecccCchhHHHHhhhcCCC--------CCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccc
Q 010403          292 LCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR  363 (511)
Q Consensus       292 l~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~--------~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~  363 (511)
                      ||||++|+||++|+||+|++|++||+.+++.        .|+.|++|+||.|+++++||||+|||+||+|++|||+.+++
T Consensus       255 I~NMa~E~GA~~gifp~De~T~~YL~~~gr~~~~~~~~~y~~~l~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~  334 (753)
T 1c96_A          255 ICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVA  334 (753)
T ss_dssp             HHHHGGGGTCSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHH
T ss_pred             hhccchhhCcccccccCcHHHHHHHHhcCCcHHHHHHHHHHhhccCCCCCceeEEEEEEccccceeecCCCCCcceeEhH
Confidence            9999999999999999999999999998872        34678899999999999999999999999999999999999


Q ss_pred             cccce--------eeeeEEEecCCCCChHHHHHHHHHHHh---cCCcceeeEEEecCcHHHHHHHhcCCCCCCCCchHHH
Q 010403          364 ECKDV--------KIDRVYIGSCTGGKTEDFLAAAKVFLA---SGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQ  432 (511)
Q Consensus       364 e~~~~--------~Id~a~IGSCTngr~eDl~~AA~iL~~---~G~kv~v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~  432 (511)
                      |+.+.        +||+||||||||+|+|||++||+|||+   +|++.+|+++|+|+|++|+.++.++|        +++
T Consensus       335 e~~~~~~~~~~~~~Vd~~~IGSCTN~~~~Dl~~AA~ilkga~~~~v~~~V~~~v~PgS~~V~~~~~~~G--------l~~  406 (753)
T 1c96_A          335 EVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDG--------YAQ  406 (753)
T ss_dssp             HHHHHHHHHTCCCBEEEEEEBTTTBCSHHHHHHHHHHHHHHHTTTCCCSSEEEECCSBHHHHHHHHHTT--------HHH
T ss_pred             HhhhhHhhcCCccceEEEEEecCCCCCHHHHHHHHHHhccHhhcCCCCCceEEEeCCCHHHHHHHHHcC--------cHH
Confidence            99988        999999999999999999999999996   55556699999999999999999964        899


Q ss_pred             HHHHcCccccCCCCCccccCCCCCcccCCCCCcEEEEecCCCCCCCC-CCCCCcEEecCHHHHHHHHHcCCCC-Cccc
Q 010403          433 IFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTGYVT-DPRE  508 (511)
Q Consensus       433 ~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GRm-G~~~a~iyLASP~tvAAsAl~G~It-dpr~  508 (511)
                      +|++|||.| .+||||+|+|++.+..+..+++++||||+||||+||| |++++++|||||++||||||+|+|+ ||+.
T Consensus       407 ~l~~aG~~i-~~~gCg~CiG~~~~~~~~~~~~~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~  483 (753)
T 1c96_A          407 VLRDVGGIV-LANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPET  483 (753)
T ss_dssp             HHHHTTEEE-CCSSCGGGGTCBCCCSSCTTCCEEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTT
T ss_pred             HHHHcCcEE-ecCCceeeecCCCCcccccCCcceEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCccc
Confidence            999999999 6999999999976533345667789999999999999 5888999999999999999999999 7763
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Back     alignment and structure
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 511
d1l5ja3490 c.83.1.1 (A:373-862) Aconitase B, C-terminal domai 1e-108
d1acoa2527 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain 3e-78
d2b3ya2629 c.83.1.1 (A:2-630) Iron-responsive element binding 4e-78
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 490 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Aconitase B, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  330 bits (846), Expect = e-108
 Identities = 94/482 (19%), Positives = 158/482 (32%), Gaps = 74/482 (15%)

Query: 69  MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128
            +L +K+  RA     + PG      +  + + D  GP +    K         +  + +
Sbjct: 10  FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKD---LACLGFSADLV 66

Query: 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188
           +    H               L DF M +                     GV H  L   
Sbjct: 67  MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLR------------PGDGVIHSWL--N 112

Query: 189 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248
               P  V  G DSHT             G+    F   TG + L +P ++     G+M 
Sbjct: 113 RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 169

Query: 249 DYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSMEERMTLCNMVVE 298
             +  +DL+  I       G            +         +  L +E+   L +   E
Sbjct: 170 PGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAE 229

Query: 299 AGGKNGVVPA-DGTTFKYLEDKTSLPY---------------------------EPVYSD 330
                  +        +YL     L                             E + +D
Sbjct: 230 RSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEAD 289

Query: 331 EKASFLSEYRFDISKLEP-LVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 389
             A + +    D++ ++  ++  P+ PD+       +  KID V+IGSC       F AA
Sbjct: 290 ADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCM-TNIGHFRAA 348

Query: 390 AKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGA 449
            K+  A   ++    ++ P T+     +          +    +F ++G      P C  
Sbjct: 349 GKLLDAHKGQLPTRLWVAPPTRMDAAQLTE--------EGYYSVFGKSGARI-EIPGCSL 399

Query: 450 CLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 509
           C+G      AR+ +    VST+ RNFP R+G     ++LAS   AA +AL G +  P E+
Sbjct: 400 CMGNQ----ARVADGATVVSTSTRNFPNRLG-TGANVFLASAELAAVAALIGKLPTPEEY 454

Query: 510 LE 511
             
Sbjct: 455 QT 456
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 527 Back     information, alignment and structure
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 629 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
d1acoa2527 Aconitase A, N-terminal domain {Cow (Bos taurus) [ 100.0
d1l5ja3490 Aconitase B, C-terminal domain {Escherichia coli [ 100.0
d2b3ya2629 Iron-responsive element binding protein 1, N-termi 100.0
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Aconitase A, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-123  Score=999.84  Aligned_cols=414  Identities=26%  Similarity=0.388  Sum_probs=372.5

Q ss_pred             CCCCcHHHHHHHHhcCC---CCCCCC-CeEEEeeeEEEecCCChhHHHHHHHHHhCCCCcccCCCcEEEEecCCCCCCc-
Q 010403           66 KNAMTLTEKIFSRASEK---PQLSPG-DNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD-  140 (511)
Q Consensus        66 ~~~~Tl~EKIl~~~~~~---~~v~~G-d~v~v~vD~v~~hD~tgp~~~~~~~~e~g~~~~V~~p~kv~~~~DH~vp~~~-  140 (511)
                      +|||||+||||++|+..   .++.+| ++|.++||++++||+|+|+++..|++ +|. .++++|.++  ++||++|+.. 
T Consensus        32 ~rP~TL~EKI~~~Hl~~~~~~~~~~g~~~v~~~vDrv~~hD~T~~~a~~~l~~-~g~-~~~~~p~~v--~~DH~v~~~~~  107 (527)
T d1acoa2          32 NRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-SGL-PKVAVPSTI--HCDHLIEAQLG  107 (527)
T ss_dssp             CSCCCHHHHHHHTTBSCTTTCCCCTTTSEEEECCSEEEEEHHHHHHHHHHHHH-HTC-SSCSSCEEE--ECCSSCCBSSC
T ss_pred             CCCcCHHHHHHHHHhcccccCcccCCCceEEEecCEEEEEccchHHHHHHHHH-cCC-CCCCCCCCE--EeCCCcCCccc
Confidence            58999999999999632   234444 68999999999999999999999964 774 689999876  4599999842 


Q ss_pred             ----HH-----HHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCceeeeEecceeeeeCCceEEcCCCCCcCCCccc
Q 010403          141 ----ER-----ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFG  211 (511)
Q Consensus       141 ----~~-----~a~~~~~~r~far~~gi~~f~d~~~~~n~~~~Ppg~GI~Hq~l~eeg~~~PG~~vvGtDSHT~t~GAlG  211 (511)
                          ..     ..+.+++++.+++++|+.+ |           ||++|||||+++|+ +++||++++|+||||||+||||
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-----------~pg~GI~H~v~~E~-~~~PG~~ivg~DSHT~t~GalG  174 (527)
T d1acoa2         108 GEKDLRRAKDINQEVYNFLATAGAKYGVGF-W-----------RPGSGIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLG  174 (527)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHTCEE-E-----------CTTSBCHHHHHHHH-TCCTTCEEEESSTTGGGGGGGT
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhhhccce-e-----------ecCCceEEEEcccc-cccCCeEEecCCCCcccccccc
Confidence                11     1234677888899998864 4           35789999988775 9999999999999999999999


Q ss_pred             ceeccCchhHHHHHHhcceEEeecCCeeeEEEEeeCCCCCcHHHHHHHHHHHhhccCCCceEEEEecccccCCChhhhhh
Q 010403          212 QFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMT  291 (511)
Q Consensus       212 a~a~GvG~td~a~~l~tg~~~lkvPetv~V~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~T  291 (511)
                      +||||||++|++.+|+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+++++||+++|||
T Consensus       175 ala~GvG~te~~~~~~t~~~~~~vPetv~v~l~G~l~~gvtakDviL~i~~~l~~~g~~g~~vEf~G~~i~~Ls~~~R~T  254 (527)
T d1acoa2         175 GICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMAT  254 (527)
T ss_dssp             CEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHCTTTTBTEEEEEESGGGGGSCHHHHHH
T ss_pred             ceeccCcHHHHHHHHhCCceeecCCcEEEEEEecCCCCCccHHHHHHHHHHHHhhcCCCceeEEEeccccceeccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccCceeecccCchhHHHHhhhcCCC--------CCccccCCCCCeecEEEEEECCCceeeeecCCCcccccccc
Q 010403          292 LCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR  363 (511)
Q Consensus       292 l~NMa~E~GA~~~i~~~D~~t~~yl~~r~~~--------~~~~l~~D~dA~Y~~~i~iDls~leP~VA~P~~Pdnv~~v~  363 (511)
                      ||||++|+||++||||+|++|++||+.+++.        .|+.+++|+||.|+++|+||||+|||+||+|++|||+.+++
T Consensus       255 i~NMa~E~GA~~gif~~D~~t~~yl~~~gr~~~~~~~~~~~~~l~~D~~A~Y~~~ieiDls~ieP~Va~P~~Pd~~~pv~  334 (527)
T d1acoa2         255 ICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVA  334 (527)
T ss_dssp             HHHHGGGGTBSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHH
T ss_pred             hhhccccccceeeEEeccHHHHHHHhhcCccchhhcchhhhhhcccccCCccceEEEEEhHhchhheecCCCCcceeeec
Confidence            9999999999999999999999999988762        35678899999999999999999999999999999999999


Q ss_pred             cccc--------eeeeeEEEecCCCCChHHHHHHHHHHH---hcCCcceeeEEEecCcHHHHHHHhcCCCCCCCCchHHH
Q 010403          364 ECKD--------VKIDRVYIGSCTGGKTEDFLAAAKVFL---ASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQ  432 (511)
Q Consensus       364 e~~~--------~~Id~a~IGSCTngr~eDl~~AA~iL~---~~G~kv~v~~~V~PaS~~V~~~a~~~g~~g~~~~g~~~  432 (511)
                      ++.+        .+||+||||||||||+|||++||+|||   ++|++++|+++|+|+|++|++++.++|        +++
T Consensus       335 e~~~~~~~~~~~~~Id~afIGSCTN~r~~Dl~~AA~ilk~~~~~g~~~~v~~~v~PgS~~V~~~~~~~G--------l~~  406 (527)
T d1acoa2         335 EVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDG--------YAQ  406 (527)
T ss_dssp             HHHHHHHHHTCCCBEEEEEECSTTSCSHHHHHHHHHHHHHHHHTTCCCSSEEEECCSBHHHHHHHHHTT--------HHH
T ss_pred             hhhhhhhhhccCceeeEeeeccccCCCchHHHHHHHHHhhHhhcCCccccceEEecCcHHHHHHHHHCc--------hHH
Confidence            8775        489999999999999999999999999   457777899999999999999999964        899


Q ss_pred             HHHHcCccccCCCCCccccCCCCCcccCCCCCc--EEEEecCCCCCCCCC-CCCCcEEecCHHHHHHHHHcCCCC-Ccc
Q 010403          433 IFEEAGCDTPASPSCGACLGGPKDTYARMNEPM--VCVSTTNRNFPGRMG-HKEGQIYLASPYTAAASALTGYVT-DPR  507 (511)
Q Consensus       433 ~f~~AGa~i~~~pgCg~C~G~~~~~~g~l~~ge--v~vsT~NRNF~GRmG-~~~a~iyLASP~tvAAsAl~G~It-dpr  507 (511)
                      +|++|||.| .+||||+|+|++..  +.+.+||  +||||+||||+|||| ++.+++|||||+|||||||+|+|+ ||+
T Consensus       407 ~l~~aG~~i-~~pgCg~CiG~~~~--~~~~~ge~~~~vsTsNRNF~GR~G~~~~a~~yLaSP~~vaA~Ai~G~It~dp~  482 (527)
T d1acoa2         407 VLRDVGGIV-LANACGPCIGQWDR--KDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPE  482 (527)
T ss_dssp             HHHHTTEEE-CCSSCGGGGTCBCC--CSSCTTCCEEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBSSCCTT
T ss_pred             HHHHcCcEE-ccCcchhhccCCcc--cccccCcCceEEEcCCCCCCcCCCCCCCcceEeCCHHHHHHHHhhceeecCCC
Confidence            999999999 69999999998532  3455665  899999999999998 556889999999999999999999 997
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure