Citrus Sinensis ID: 010408

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
cccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEccEEEcccccccccccccccccccHHHHHHHccHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHccccccccEEEccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccEEcccccccccccccccccccccccccccccEEEccccccccccEEEEEEEEEcccccccEEEEEEEEccccccccccccccccEEEEccccEEEEEEEEEccccEEEEcccccEEEcccEEEEEEccccccEEEEEEEEEEEc
cccccccccEEEccccEEccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEccccccccccccccccEccHHHHHHHcccHHHHHHHcccccEEEHEHHccccccccccHHHHHHHHHHHccccEEEEEccHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccEEEEEEccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEccccEEcccccccccccEEEEEcccccHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccccEEEEccccEEEccccccEEEEEEEEcccccccEEEccccccccccccccccccEEcccHHcccccEEEEEEEEEEcccccccEEEEEEEcccccccccHHHHcccEEEEEccccEEEEEEEEccHHHcEEEcccccEEEccccEEEEEcccccEEEEEEEEEEEcc
mynggmagltywspnvnifrdprwgrgqetpgedpvltgkYAASYVrglqgntgsrlKVAACCKHytaydldnwngvdryhfnarvskqdledtynvpfkACVVEGKVASVMCSynqvngkptcadpdilkntihgqwrldgyivsdcdsvgvlyntqhytrtpeEAAADAIKAGVacgyttplqgISRYAKTIHQAgcfgvacngnqLIGAAEVAARQADATVLVMGLDQSIEAEFIDRaglllpgrQQELVSRVAKASRGPVVLVLMCggpvdvsfakndprigailwvgypgqaggAAIADVLFgranpggklpmtwypqdyvsrlpmtdmrmraargypgrtyrfykgpvvfpfghgmsytTFAHTlskapnqfsvpiatslyafknttisSNAIRVAHTNCNDAMSLGLHvdikntgdmagtHTLLvfakppagnwspnkqligfkKVHVTAGALQSVRLDIHVckhlsvvdkfgirripmgehslhigdlkHSISLQANLEGIKF
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGlqgntgsrLKVAACCKHYTAYDLDNWNGVDRYHFNARVskqdledtynVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGehslhigdlkhsislqanlegikf
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
*****MAGLTYWSPNVNIFRDPRWGR********PVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI***********
**NGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
*YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
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MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query511 2.2.26 [Sep-21-2011]
P83344461 Putative beta-D-xylosidas N/A no 0.657 0.728 0.734 1e-141
Q9FGY1774 Beta-D-xylosidase 1 OS=Ar yes no 0.651 0.430 0.679 1e-127
Q94KD8768 Probable beta-D-xylosidas no no 0.645 0.429 0.624 1e-123
Q9FLG1784 Beta-D-xylosidase 4 OS=Ar no no 0.636 0.414 0.523 3e-95
A5JTQ2774 Beta-xylosidase/alpha-L-a N/A no 0.634 0.418 0.498 2e-91
Q9LXD6773 Beta-D-xylosidase 3 OS=Ar no no 0.632 0.417 0.505 3e-90
A5JTQ3774 Beta-xylosidase/alpha-L-a N/A no 0.632 0.417 0.496 7e-90
Q9LJN4781 Probable beta-D-xylosidas no no 0.616 0.403 0.447 5e-78
Q9SGZ5767 Probable beta-D-xylosidas no no 0.610 0.406 0.444 2e-77
Q9LXA8792 Probable beta-D-xylosidas no no 0.641 0.414 0.436 3e-77
>sp|P83344|XYNB_PRUPE Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  501 bits (1289), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/339 (73%), Positives = 281/339 (82%), Gaps = 3/339 (0%)

Query: 174 AGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 233
           AGVACGYTTPLQGI RY +TIHQAGC  V CNGNQL GAAE AARQADATVLVMGLDQSI
Sbjct: 123 AGVACGYTTPLQGIGRYTRTIHQAGCTDVHCNGNQLFGAAEAAARQADATVLVMGLDQSI 182

Query: 234 EAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGY 293
           EAEF+DRAGLLLPG QQELVSRVA+ASRGP +LVLM GGP+DV+FAKNDPRI AI+WVGY
Sbjct: 183 EAEFVDRAGLLLPGHQQELVSRVARASRGPTILVLMSGGPIDVTFAKNDPRISAIIWVGY 242

Query: 294 PGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYK 351
           PGQAGG AIA+VLFG ANPGGKLPMTWYPQ+YV+ LPMTDM MRA  ARGYPGRTYRFY 
Sbjct: 243 PGQAGGTAIANVLFGTANPGGKLPMTWYPQNYVTHLPMTDMAMRADPARGYPGRTYRFYI 302

Query: 352 GPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMS 411
           GPVVFPFG G+SYTTFAH L+  P   SVP+ TSL A  N+T+ S  +RV+H +CN    
Sbjct: 303 GPVVFPFGLGLSYTTFAHNLAHGPTLVSVPL-TSLKATANSTMLSKTVRVSHPDCNALSP 361

Query: 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCK 471
           L +HVD+KNTG M GTHTLLVF  PP G W+ +KQL+GF K+H+  G+ + VR+ +HVCK
Sbjct: 362 LDVHVDVKNTGSMDGTHTLLVFTSPPDGKWASSKQLMGFHKIHIATGSEKRVRIAVHVCK 421

Query: 472 HLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIK 510
           HLSVVD+FGIRRIP+GEH L IGDL H +SLQ NL  IK
Sbjct: 422 HLSVVDRFGIRRIPLGEHKLQIGDLSHHVSLQTNLGEIK 460
May be involved in cell wall metabolism, related to senescence.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: -
>sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1 Back     alignment and function description
>sp|Q94KD8|BXL2_ARATH Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2 Back     alignment and function description
>sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2 Back     alignment and function description
>sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
183579871 769 arabinofuranosidase [Citrus unshiu] 0.634 0.421 0.942 1e-180
118489157343 unknown [Populus trichocarpa x Populus d 0.655 0.976 0.772 1e-152
224111912 768 predicted protein [Populus trichocarpa] 0.655 0.436 0.769 1e-152
189380221 767 beta xylosidase [Camellia sinensis] 0.655 0.436 0.758 1e-149
157041199 774 beta-D-xylosidase [Pyrus pyrifolia] 0.657 0.434 0.750 1e-148
65736613 774 alpha-L-arabinofuranosidase / beta-D-xyl 0.657 0.434 0.747 1e-147
298364130 774 alpha-L-arabinofuranosidase/beta-D-xylos 0.657 0.434 0.739 1e-146
224099193 755 predicted protein [Populus trichocarpa] 0.647 0.438 0.764 1e-145
121308314349 arabinofuranosidase/xylosidase homolog [ 0.657 0.962 0.740 1e-140
225431898 770 PREDICTED: beta-D-xylosidase 1-like [Vit 0.655 0.435 0.744 1e-140
>gi|183579871|dbj|BAG28345.1| arabinofuranosidase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/331 (94%), Positives = 317/331 (95%), Gaps = 7/331 (2%)

Query: 174 AGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 233
           AGVACGYTTPLQGISRYAKTIHQAGC GVACNGNQLIGAAEVAARQADATVLVMGLDQSI
Sbjct: 432 AGVACGYTTPLQGISRYAKTIHQAGCLGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 491

Query: 234 EAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGY 293
           EAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGY
Sbjct: 492 EAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGY 551

Query: 294 PGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGP 353
           PGQAGGAAIADVLFGRANPGGKLPMTWYPQDYV+RLPMTDMRMRA RGYPGRTYRFYKGP
Sbjct: 552 PGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVARLPMTDMRMRAGRGYPGRTYRFYKGP 611

Query: 354 VVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG 413
           VVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG
Sbjct: 612 VVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG 671

Query: 414 LHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHL 473
           LHVD+KNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHL
Sbjct: 672 LHVDVKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHL 731

Query: 474 SVVDKFGIRRIP-------MGEHSLHIGDLK 497
           SVVDKFGIRRIP       +G  S+H+   K
Sbjct: 732 SVVDKFGIRRIPWVNIVSILGISSIHLSSSK 762

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118489157|gb|ABK96385.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224111912|ref|XP_002316021.1| predicted protein [Populus trichocarpa] gi|222865061|gb|EEF02192.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|189380221|gb|ACD93208.1| beta xylosidase [Camellia sinensis] Back     alignment and taxonomy information
>gi|157041199|dbj|BAF79669.1| beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|65736613|dbj|BAD98523.1| alpha-L-arabinofuranosidase / beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|298364130|gb|ADI79208.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Malus x domestica] Back     alignment and taxonomy information
>gi|224099193|ref|XP_002311398.1| predicted protein [Populus trichocarpa] gi|222851218|gb|EEE88765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|121308314|dbj|BAF43576.1| arabinofuranosidase/xylosidase homolog [Prunus persica] Back     alignment and taxonomy information
>gi|225431898|ref|XP_002276351.1| PREDICTED: beta-D-xylosidase 1-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
TAIR|locus:2157994774 BXL1 "beta-xylosidase 1" [Arab 0.651 0.430 0.679 1.1e-209
TAIR|locus:2196060768 BXL2 "beta-xylosidase 2" [Arab 0.645 0.429 0.624 1.1e-200
TAIR|locus:2174809784 XYL4 "beta-D-xylosidase 4" [Ar 0.636 0.414 0.523 2.4e-166
TAIR|locus:2144756773 BXL3 "AT5G09730" [Arabidopsis 0.632 0.417 0.505 1.1e-157
TAIR|locus:2091236781 AT3G19620 [Arabidopsis thalian 0.616 0.403 0.456 1.6e-147
TAIR|locus:2029391767 AT1G78060 [Arabidopsis thalian 0.610 0.406 0.444 4e-138
UNIPROTKB|P83344461 P83344 "Putative beta-D-xylosi 0.657 0.728 0.734 1.4e-135
TAIR|locus:2142434792 AT5G10560 [Arabidopsis thalian 0.641 0.414 0.436 9.2e-133
ASPGD|ASPL0000029139 763 bxlB [Emericella nidulans (tax 0.354 0.237 0.473 2.1e-82
UNIPROTKB|Q5ATH9 763 bxlB "Exo-1,4-beta-xylosidase 0.354 0.237 0.473 2.1e-82
TAIR|locus:2157994 BXL1 "beta-xylosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1215 (432.8 bits), Expect = 1.1e-209, Sum P(2) = 1.1e-209
 Identities = 229/337 (67%), Positives = 273/337 (81%)

Query:   174 AGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 233
             AG AC YT+PLQGISRYA+T+HQAGC GVAC GNQ  GAAE AAR+ADATVLVMGLDQSI
Sbjct:   438 AGKACAYTSPLQGISRYARTLHQAGCAGVACKGNQGFGAAEAAAREADATVLVMGLDQSI 497

Query:   234 EAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGY 293
             EAE  DR GLLLPG QQ+LV+RVA+ASRGPV+LVLM GGP+DV+FAKNDPR+ AI+W GY
Sbjct:   498 EAETRDRTGLLLPGYQQDLVTRVAQASRGPVILVLMSGGPIDVTFAKNDPRVAAIIWAGY 557

Query:   294 PGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGP 353
             PGQAGGAAIA+++FG ANPGGKLPMTWYPQDYV+++PMT M MRA+  YPGRTYRFYKGP
Sbjct:   558 PGQAGGAAIANIIFGAANPGGKLPMTWYPQDYVAKVPMTVMAMRASGNYPGRTYRFYKGP 617

Query:   354 VVFPFGHGMSYTTFAHTLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSL 412
             VVFPFG G+SYTTF H+L+K+P  Q SV ++    A      SS++I+V+HTNCN    +
Sbjct:   618 VVFPFGFGLSYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKM 677

Query:   413 GLHVDIKNTGDMAGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHV 469
              LHV++ NTG+  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  
Sbjct:   678 PLHVEVSNTGEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDA 737

Query:   470 CKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 506
             CKHL VVD++G RRIPMGEH LHIGDLKH+I +Q  L
Sbjct:   738 CKHLGVVDEYGKRRIPMGEHKLHIGDLKHTILVQPQL 774
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0010214 "seed coat development" evidence=IMP
GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=IDA
TAIR|locus:2196060 BXL2 "beta-xylosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174809 XYL4 "beta-D-xylosidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144756 BXL3 "AT5G09730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091236 AT3G19620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029391 AT1G78060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P83344 P83344 "Putative beta-D-xylosidase" [Prunus persica (taxid:3760)] Back     alignment and assigned GO terms
TAIR|locus:2142434 AT5G10560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029139 bxlB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ATH9 bxlB "Exo-1,4-beta-xylosidase bxlB" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P83344XYNB_PRUPE3, ., 2, ., 1, ., -0.73450.65750.7288N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
PLN03080779 PLN03080, PLN03080, Probable beta-xylosidase; Prov 1e-112
PLN03080 779 PLN03080, PLN03080, Probable beta-xylosidase; Prov 3e-81
pfam01915221 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam 9e-50
pfam00933296 pfam00933, Glyco_hydro_3, Glycosyl hydrolase famil 1e-45
PRK15098765 PRK15098, PRK15098, beta-D-glucoside glucohydrolas 8e-34
COG1472397 COG1472, BglX, Beta-glucosidase-related glycosidas 3e-32
PRK15098 765 PRK15098, PRK15098, beta-D-glucoside glucohydrolas 4e-23
pfam1431071 pfam14310, Fn3-like, Fibronectin type III-like dom 4e-10
>gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional Back     alignment and domain information 
 Score =  349 bits (898), Expect = e-112
 Identities = 155/340 (45%), Positives = 218/340 (64%), Gaps = 12/340 (3%)

Query: 175 GVACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 233
           GV C  TT  +G+  Y  KT   AGC  V+CN +   G A   A++AD  V+V GLD S 
Sbjct: 442 GVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQ 501

Query: 234 EAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGY 293
           E E  DR  LLLPG+Q +L+S VA  S+ PVVLVL  GGPVDVSFAK DPRI +ILW+GY
Sbjct: 502 ETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGY 561

Query: 294 PGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYK 351
           PG+ GG A+A+++FG  NPGG+LPMTWYP+ + + +PMTDM MRA  +RGYPGRTYRFY 
Sbjct: 562 PGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYT 620

Query: 352 GPVVFPFGHGMSYTTFAHTLSKAPNQFSVP--IATSLYAFKNTTISSNAIRVAHTN---- 405
           G VV+ FG+G+SYT F++ +  AP + S+         + K      + +          
Sbjct: 621 GDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKPLLQRRDELDYVQIEDIAS 680

Query: 406 CNDAMSLGLHVDIKNTGDMAGTHTLLVFAK-PPAGNWSPNKQLIGFKKVHVTAGALQSVR 464
           C +++   +H+ + N G+M G+H +++F++ PP     P KQL+GF +VH  +G      
Sbjct: 681 C-ESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETE 739

Query: 465 LDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 504
           + +  CKHLSV ++ G R +P+G+H L +GDL+HS+S++ 
Sbjct: 740 IVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779

Length = 779
>gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional Back     alignment and domain information
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain Back     alignment and domain information
>gnl|CDD|216204 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain Back     alignment and domain information
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|222669 pfam14310, Fn3-like, Fibronectin type III-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 511
PLN03080779 Probable beta-xylosidase; Provisional 100.0
PRK15098765 beta-D-glucoside glucohydrolase; Provisional 100.0
PF00933299 Glyco_hydro_3: Glycosyl hydrolase family 3 N termi 100.0
COG1472397 BglX Beta-glucosidase-related glycosidases [Carboh 100.0
PRK05337337 beta-hexosaminidase; Provisional 100.0
PF01915227 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter 99.97
PF1431071 Fn3-like: Fibronectin type III-like domain; PDB: 3 99.85
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 96.62
PF1269082 BsuPI: Intracellular proteinase inhibitor; InterPr 96.06
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 95.08
TIGR00192101 urease_beta urease, beta subunit. In a number of s 92.18
PF00699100 Urease_beta: Urease beta subunit CAUTION: The Pros 91.95
PF14874102 PapD-like: Flagellar-associated PapD-like 90.95
PRK13203102 ureB urease subunit beta; Reviewed 88.94
cd00407101 Urease_beta Urease beta-subunit; Urease is a nicke 88.72
COG1470 513 Predicted membrane protein [Function unknown] 87.68
PRK13201136 ureB urease subunit beta; Reviewed 85.61
PRK13202104 ureB urease subunit beta; Reviewed 85.2
PF0550689 DUF756: Domain of unknown function (DUF756); Inter 84.82
PRK13205162 ureB urease subunit beta; Reviewed 83.74
COG1470513 Predicted membrane protein [Function unknown] 82.95
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 80.21
>PLN03080 Probable beta-xylosidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.1e-121  Score=1022.51  Aligned_cols=499  Identities=51%  Similarity=0.989  Sum_probs=418.1

Q ss_pred             CCccccceeeecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCC---------CCCCcEEEeecccccCCcc
Q 010408            2 YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT---------GSRLKVAACCKHYTAYDLD   72 (511)
Q Consensus         2 ~~~~~~Gi~~~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~---------~~~~~V~a~~KHF~g~g~~   72 (511)
                      ++.+.+|+++|||++||+|||||||++|||||||+|+++||+|+|+|||+.+         .++.+|+||+||||||+++
T Consensus       144 g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e  223 (779)
T PLN03080        144 YNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLE  223 (779)
T ss_pred             ccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCcc
Confidence            3445568998999999999999999999999999999999999999999842         2344699999999999998


Q ss_pred             CCCCCCccccccccCHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCccc
Q 010408           73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVG  152 (511)
Q Consensus        73 ~~~~~~r~~~~~~~s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~  152 (511)
                      ++++.+|..+++.+++++|+|+||+||++||++|.+.+||||||++||+|||+|++||++ ||+||||+|+|||||++|.
T Consensus       224 ~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~  302 (779)
T PLN03080        224 KWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVA  302 (779)
T ss_pred             ccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHH
Confidence            766667888889999999999999999999999988899999999999999999999986 9999999999999999999


Q ss_pred             ccccCCCCCCCHHHHHHHchhcc---------------------------------------------------------
Q 010408          153 VLYNTQHYTRTPEEAAADAIKAG---------------------------------------------------------  175 (511)
Q Consensus       153 ~~~~~~~~~~~~~~a~~~ai~AG---------------------------------------------------------  175 (511)
                      .+...|++..+.++++++||+||                                                         
T Consensus       303 ~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~  382 (779)
T PLN03080        303 TIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLG  382 (779)
T ss_pred             HhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccc
Confidence            98877888778899999999999                                                         


Q ss_pred             ------------------------------------------------------------ccCCccchhhhhhhhe-eee
Q 010408          176 ------------------------------------------------------------VACGYTTPLQGISRYA-KTI  194 (511)
Q Consensus       176 ------------------------------------------------------------~~~~~~~~l~~~~~~~-~~~  194 (511)
                                                                                  .|++.++|+++|+++. .+.
T Consensus       383 ~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~  462 (779)
T PLN03080        383 PNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTS  462 (779)
T ss_pred             ccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcce
Confidence                                                                        0112234444544432 234


Q ss_pred             ccCCccccccCCcchHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEeCCceE
Q 010408          195 HQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV  274 (511)
Q Consensus       195 ~~~G~~~~~~~~~~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~  274 (511)
                      |..||....+.....+++|+++|++||+|||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|+
T Consensus       463 y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv  542 (779)
T PLN03080        463 FAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPV  542 (779)
T ss_pred             eccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCcee
Confidence            55555443333345688999999999999999999999999999999999999999999999987777999999999999


Q ss_pred             EccCccCCCCccEEEEecCCChhHHHHHHHHHcCCCCCCeecCceecccccCCCCCCccccccc--cCCCCCCcccccCC
Q 010408          275 DVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKG  352 (511)
Q Consensus       275 ~l~~~~~~~~v~Ail~a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~  352 (511)
                      +|+|+.+.++++|||++|||||++|+|+||||||++|||||||+||||+++ +++|++++++++  ..+|++++||||+.
T Consensus       543 ~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~  621 (779)
T PLN03080        543 DVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTG  621 (779)
T ss_pred             eccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCC
Confidence            999986667899999999999999999999999999999999999989987 789988887754  35688999999999


Q ss_pred             CcccccCcCCCcCCceecccccCCCcccccccccccccccccc---c---cceeecc-ccCCCceeEEEEEEEEeCCCCC
Q 010408          353 PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTIS---S---NAIRVAH-TNCNDAMSLGLHVDIKNTGDMA  425 (511)
Q Consensus       353 ~~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~-~~~~~~~~~~v~v~V~NtG~~~  425 (511)
                      +|+||||||||||||+||+++++...++...... .+......   .   ...++.. ..|+.. .++|+|+|||||+++
T Consensus       622 ~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~  699 (779)
T PLN03080        622 DVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQ-DSISRKPLLQRRDELDYVQIEDIASCESL-RFNVHISVSNVGEMD  699 (779)
T ss_pred             CcceeccCCCccceeEeccccccccccccccccc-cccccccccccccccccccccccccCCCc-eEEEEEEEEECCccc
Confidence            9999999999999999999975421111100000 00000000   0   0000000 112322 489999999999999


Q ss_pred             cceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEEEEEeCCCceEEEEE
Q 010408          426 GTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA  504 (511)
Q Consensus       426 G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~  504 (511)
                      |+||||||+++|.++ .+|+||||||+||+|+|||+++|+|+|+++++|++||++++|++|+|+|+|+||.+++++++++
T Consensus       700 G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~  779 (779)
T PLN03080        700 GSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI  779 (779)
T ss_pred             CcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence            999999999999876 8999999999999999999999999999658999999999999999999999999999988864

>PRK15098 beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05337 beta-hexosaminidase; Provisional Back     alignment and domain information
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 Back     alignment and domain information
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>TIGR00192 urease_beta urease, beta subunit Back     alignment and domain information
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PRK13203 ureB urease subunit beta; Reviewed Back     alignment and domain information
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK13201 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13202 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins Back     alignment and domain information
>PRK13205 ureB urease subunit beta; Reviewed Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
3ac0_A845 Crystal Structure Of Beta-Glucosidase From Kluyvero 3e-26
3abz_A845 Crystal Structure Of Se-Met Labeled Beta-Glucosidas 7e-26
4i3g_A 829 Crystal Structure Of Desr, A Beta-glucosidase From 5e-18
4i3g_A829 Crystal Structure Of Desr, A Beta-glucosidase From 3e-15
2x40_A 721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 1e-16
2x40_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 1e-13
3rrx_A 822 Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Bet 2e-16
3usz_A 822 Crystal Structure Of Truncated Exo-1,31,4-Beta-Gluc 2e-16
2x42_A 721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 7e-16
2x42_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 1e-13
3zyz_A713 Crystal Structure Of A Glycoside Hydrolase Family 3 3e-13
4i8d_A714 Crystal Structure Of Beta-D-Glucoside Glucohydrolas 3e-13
1ex1_A605 Beta-D-Glucan Exohydrolase From Barley Length = 605 2e-09
1lq2_A602 Crystal Structure Of Barley Beta-D-Glucan Glucohydr 2e-09
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 Back     alignment and structure 
Iteration: 1

 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 146/309 (47%), Gaps = 47/309 (15%)
Query: 196 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 255
           QAG      +  ++  AAE+AA+  D  VL++GL+   E E  DR  + LP R  ELV  
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRA 609
Query: 256 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 315
           V KA+   V+ V   G PV+  + ++     A++   Y G   G AIADVL+G   P GK
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 316 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 368
           L ++W P          + +    R   G      YR+Y+     V FPFG+G+SYTTF 
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 369 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 427
             +S                FK T              +D +++   VD+KNTGD  AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 428 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 485
             + V+        S P K+L GF+KVH+  G  ++V +D+ +   +S   ++ G   + 
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 486 MGEHSLHIG 494
            GE+ + +G
Sbjct: 814 AGEYLVSVG 822
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 Back     alignment and structure
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 Back     alignment and structure
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 Back     alignment and structure
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 Back     alignment and structure
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a Resolution. Length = 713 Back     alignment and structure
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei Length = 714 Back     alignment and structure
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley Length = 605 Back     alignment and structure
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole Length = 602 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 1e-55
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 5e-45
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 7e-55
2x41_A 721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 9e-44
3rrx_A 822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 8e-44
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 2e-36
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 2e-43
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 9e-33
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 4e-11
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 2e-10
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 3e-10
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 6e-07
4g6c_A342 Beta-hexosaminidase 1; ssgcid, niaid, structural g 1e-08
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 4e-07
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
 Score =  198 bits (506), Expect = 1e-55
 Identities = 98/373 (26%), Positives = 155/373 (41%), Gaps = 49/373 (13%)

Query: 136 GQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAG-----VACGYTTPLQGISRY 190
           G + L+  ++ D        +      T E      +K G          + P  G+   
Sbjct: 485 GLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVGE 544

Query: 191 AKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ 250
                       A + ++ I  A   A + D  VL++GL+   E E  DR  + LP R  
Sbjct: 545 FGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTN 604

Query: 251 ELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRA 310
           ELV  V KA+    V+V   G PV+  + ++     A++   Y G   G AIADVL+G  
Sbjct: 605 ELVRAVLKANP-NTVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDV 660

Query: 311 NPGGKLPMTWYP--QDYVSRL--PMTDMRMRAARG-YPG-RTYRFYKGPVVFPFGHGMSY 364
            P GKL ++W    QD  + L       R+      + G R Y   +  V FPFG+G+SY
Sbjct: 661 VPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSY 720

Query: 365 TTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD- 423
           TTF                       +  ++ + I +              VD+KNTGD 
Sbjct: 721 TTFE------------------LDISDFKVTDDKIAI-------------SVDVKNTGDK 749

Query: 424 MAGTHTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVD-KFGI 481
            AG+  + V+        S P K+L GF+KVH+  G  ++V +D+ +   +S  + + G 
Sbjct: 750 FAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGK 809

Query: 482 RRIPMGEHSLHIG 494
             +  GE+ + +G
Sbjct: 810 WHVEAGEYLVSVG 822
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 Back     alignment and structure
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 Back     alignment and structure
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Length = 535 Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Length = 351 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 100.0
3zyz_A713 Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 100.0
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 100.0
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 100.0
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 100.0
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 100.0
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 100.0
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 100.0
4gvf_A349 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: N 100.0
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 100.0
4g6c_A348 Beta-hexosaminidase 1; ssgcid, niaid, structural g 100.0
3idu_A127 Uncharacterized protein; all beta-protein, structu 97.08
2l0d_A114 Cell surface protein; structural genomics, northea 96.37
2kut_A122 Uncharacterized protein; structural genomics, PSI- 96.29
3isy_A120 Bsupi, intracellular proteinase inhibitor; intrace 94.54
4ep8_B101 Urease subunit beta; alpha-beta barrel, nickel met 92.95
4ac7_B126 Urease subunit beta; hydrolase, bacillus pasteurii 91.41
4ubp_B126 Protein (urease (chain B)); bacillus pasteurii, ni 91.41
1w8o_A 601 Bacterial sialidase; 3D-structure, glycosidase, hy 89.32
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 87.65
1yew_A382 Particulate methane monooxygenase, B subunit; memb 87.55
2x3c_A 343 Toxic extracellular endopeptidase; hydrolase; 1.99 85.72
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 85.19
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 83.47
3qga_A225 UREA2, fusion of urease beta and gamma subunits; i 83.26
1e9y_A238 Urease subunit alpha; hydrolase, dodecamer; HET: K 82.01
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Back     alignment and structure
Probab=100.00  E-value=6.6e-113  Score=964.05  Aligned_cols=449  Identities=31%  Similarity=0.501  Sum_probs=376.3

Q ss_pred             ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCcccccccc
Q 010408            8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARV   86 (511)
Q Consensus         8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~   86 (511)
                      |+|+ |||++||+|||+|||++|||||||+|+++||.|+|+|||++     ||+||+|||||||++    ++|+..++++
T Consensus        94 Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~-----gV~a~~KHFpg~g~e----~~r~~~~~~v  164 (845)
T 3abz_A           94 NAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGE-----GIAATVKHFVCNDLE----DQRFSSNSIV  164 (845)
T ss_dssp             TCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHT-----TCBCEEEEETTCCCC----TTTTTCEEEC
T ss_pred             CCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhC-----CeeEEeeccccCCcc----cCCccccCCC
Confidence            8999 99999999999999999999999999999999999999998     899999999999975    3577778899


Q ss_pred             CHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCccccc-----------c
Q 010408           87 SKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVL-----------Y  155 (511)
Q Consensus        87 s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~-----------~  155 (511)
                      ++++|+|+||+||++||+++++++||||||++||+|||+|++||++|||+||||+|+|||||+++...           +
T Consensus       165 ~~~~L~e~~L~PF~~ai~~ag~~~VM~syn~ing~pa~~s~~ll~~lLR~e~GF~G~VvSD~~~~~~~~~Al~AG~D~~m  244 (845)
T 3abz_A          165 SERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFGTYTTAAAIKNGLDIEF  244 (845)
T ss_dssp             CHHHHHHTTSHHHHHHHHHHCCSEEEECSSEETTEEGGGCHHHHTCCCCCCTCCCSEEECCTTCCCCSHHHHHHTCCBBC
T ss_pred             CHHHHHHhhHHHHHHHHHhcCCCEEEecCCCcCCEeccCCHHHHHHHHhhccCCCeEEEcccccHHHHHHHHHcCCCccc
Confidence            99999999999999999744599999999999999999999999999999999999999999876531           1


Q ss_pred             c-CCCC-C-----------C--C---HHHHHHHch------h-----------------cc-------------------
Q 010408          156 N-TQHY-T-----------R--T---PEEAAADAI------K-----------------AG-------------------  175 (511)
Q Consensus       156 ~-~~~~-~-----------~--~---~~~a~~~ai------~-----------------AG-------------------  175 (511)
                      . ...+ .           .  +   ..+++.+.+      .                 -+                   
T Consensus       245 ~~~~~~~~~~~l~~av~~G~~i~~~~id~av~RIL~~k~~~g~l~~~~~~p~~~~~~~~~~~~~~~~la~~~a~~sivLL  324 (845)
T 3abz_A          245 PGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLL  324 (845)
T ss_dssp             SSSCSSCCHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHTHHHHCCCTTCCCCCTTCSHHHHHHHHHHHHHHCEEE
T ss_pred             CCchhhhHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHhCCccccccCCccCccccccCCHHHHHHHHHHHHhCcEEe
Confidence            0 0001 0           0  0   011111000      0                 00                   


Q ss_pred             -----------------------------------ccCCccchhhhhhhhe--eeeccCCcccc----------------
Q 010408          176 -----------------------------------VACGYTTPLQGISRYA--KTIHQAGCFGV----------------  202 (511)
Q Consensus       176 -----------------------------------~~~~~~~~l~~~~~~~--~~~~~~G~~~~----------------  202 (511)
                                                         .|.+.++|+++|++..  .+.|..||...                
T Consensus       325 KN~~~~LPL~~~~~iaviGp~A~~~~~~Gggs~~~~~~~~vtpl~gi~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~  404 (845)
T 3abz_A          325 KNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAK  404 (845)
T ss_dssp             EECTTCCSCCTTSCEEEESTTTSCCCCSCBSTTCCCBSCCCCHHHHHHHHHTSCCEEECCCCCCSSCCBSGGGEESSTTS
T ss_pred             ccCCcccCCCCCCEEEEEcCCcchhhccCCCccCcccCCcCCHHHHHHHhhcCceeeccccccccccccccccccccccc
Confidence                                               2445678888887652  23444433100                


Q ss_pred             --------------------c-----------------------------------------------------------
Q 010408          203 --------------------A-----------------------------------------------------------  203 (511)
Q Consensus       203 --------------------~-----------------------------------------------------------  203 (511)
                                          .                                                           
T Consensus       405 ~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~  484 (845)
T 3abz_A          405 PADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGS  484 (845)
T ss_dssp             CSCTTTBSEEEEEESSCTTTSCTTCCCSEEEEECSSEEECTTCCCTTSBTTBCCCEEEEEEEECCSSSEEEEEEEEEESE
T ss_pred             cccCCCCceEEEEeccCcccCcccccceeeeeccccceeecccccccccccccceeEEEEEEEecCCCccEEEEEeecCc
Confidence                                0                                                           


Q ss_pred             ------------------------------------------------c------------------------CC-cchH
Q 010408          204 ------------------------------------------------C------------------------NG-NQLI  210 (511)
Q Consensus       204 ------------------------------------------------~------------------------~~-~~~~  210 (511)
                                                                      .                        .. ...+
T Consensus       485 ~~l~idg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (845)
T 3abz_A          485 GLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEI  564 (845)
T ss_dssp             EEEEETTEEEEEESSSCCBCSTTTTTSBCCEEEEEEECTTCCEEEEEEEECTTTSCCSSCCCCCEEEEEEEECCCHHHHH
T ss_pred             eEEEECCEEEeeccccccccccccccCcccceeEEEecCCceeeEEEEeccCCcccccccccccceeecccccccchhhH
Confidence                                                            0                        00 1347


Q ss_pred             HHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEeCCceEEccCccCCCCccEEEE
Q 010408          211 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILW  290 (511)
Q Consensus       211 ~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~~~~~~~~v~Ail~  290 (511)
                      ++|+++|++||+||||+|+++.+|+||.||.+|.||+.|.+||++|+++ +||||||+++|+|++|+|+   ++++|||+
T Consensus       565 ~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~-~~~tVVVl~sG~pv~m~w~---~~v~AIL~  640 (845)
T 3abz_A          565 RNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKA-NPNTVIVNQSGTPVEFPWL---EDANALVQ  640 (845)
T ss_dssp             HHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHH-CSCEEEEEECSSCCCCTTG---GGCSEEEE
T ss_pred             HHHHHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHh-CCCEEEEEeCCCcccCcch---hccCeEEE
Confidence            7899999999999999999999999999999999999999999999975 5799999999999999987   47999999


Q ss_pred             ecCCChhHHHHHHHHHcCCCCCCeecCceecccccCCCCCCccccccc---cCCCCC---CcccccC---CCcccccCcC
Q 010408          291 VGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA---ARGYPG---RTYRFYK---GPVVFPFGHG  361 (511)
Q Consensus       291 a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~---~~~~~~---~~Yr~~~---~~~lypFG~G  361 (511)
                      +|||||++|+||||||||++|||||||+|| |++. +|+|.++. +..   ...|.+   .+||||+   .+|+||||||
T Consensus       641 aw~pGqegG~AiAdVLfG~vNPSGkLP~T~-p~~~-~d~P~~~~-~~~~~g~~~y~eg~~vgYR~y~~~~~~plfPFG~G  717 (845)
T 3abz_A          641 AWYGGNELGNAIADVLYGDVVPNGKLSLSW-PFKL-QDNPAFLN-FKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYG  717 (845)
T ss_dssp             CCCCCTTHHHHHHHHHTTSSCCCCCCSSCB-CSSG-GGSTTTTS-CSCBTTEEECTTTTCCTHHHHHHHTCCCSBCTTCC
T ss_pred             cCCCcHHHHHHHHHHhcCCcCCCCCCceee-eCch-hhCCcccc-CCCCCCceeccCCccCCCcchhcCCCceeecccCC
Confidence            999999999999999999999999999997 9987 78886532 211   111222   3699997   5899999999


Q ss_pred             CCcCCceec--ccccCCCccccccccccccccccccccceeeccccCCCceeEEEEEEEEeCC-CCCcceEEEEEeeCCC
Q 010408          362 MSYTTFAHT--LSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTG-DMAGTHTLLVFAKPPA  438 (511)
Q Consensus       362 LSYTtF~ys--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~V~NtG-~~~G~evvQlY~~~~~  438 (511)
                      ||||||+|+  +++++                               + . .++|+|+||||| +++|+||||||+++|.
T Consensus       718 LSYTtF~ys~~~l~v~-------------------------------~-~-~~~v~v~V~NtG~~~~G~eVvQlYv~~~~  764 (845)
T 3abz_A          718 LSYTTFELDISDFKVT-------------------------------D-D-KIAISVDVKNTGDKFAGSEVVQVYFSALN  764 (845)
T ss_dssp             BCSSCEEEEEEEEEEC-------------------------------S-S-EEEEEEEEEECCSSCCEEEEEEEEEEESS
T ss_pred             CcceeEEEeccccccc-------------------------------C-C-eEEEEEEEEECCcCCCcceeeeeeEeCCC
Confidence            999999999  98741                               0 1 689999999999 9999999999999998


Q ss_pred             CC-CCcccccccccccccCCCCeEEEEEEec-CCCCeeEEeCC-CCEEecCeEEEEEEeCCCceEEEEEEE
Q 010408          439 GN-WSPNKQLIGFKKVHVTAGALQSVRLDIH-VCKHLSVVDKF-GIRRIPMGEHSLHIGDLKHSISLQANL  506 (511)
Q Consensus       439 ~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~-~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss~~~~~~~~~  506 (511)
                      ++ .+|+||||||+||+|+|||+++|+|+|+ . ++|++||.. +.|++|+|+|+|+||.||++++++..+
T Consensus       765 ~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~-~~l~~~d~~~~~~~~e~G~y~v~vG~ss~di~l~~~~  834 (845)
T 3abz_A          765 SKVSRPVKELKGFEKVHLEPGEKKTVNIDLELK-DAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEF  834 (845)
T ss_dssp             CSSCCCSCEEEEEEEEEECTTCEEEEEEEEEHH-HHHCEEETTTTEEEECSEEEEEEEESSTTCEEEEEEE
T ss_pred             CCcchhhheeccceeEEECCCCEEEEEEEeCCh-HHeeEEecCCCeEEEcCCEEEEEEECCCCCceeEEEE
Confidence            87 8999999999999999999999999999 8 899999996 789999999999999999998876543
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Back     alignment and structure
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A* Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Back     alignment and structure
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A* Back     alignment and structure
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A Back     alignment and structure
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} Back     alignment and structure
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Back     alignment and structure
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... Back     alignment and structure
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A* Back     alignment and structure
>1e9y_A Urease subunit alpha; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 511
d1x38a1388 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-te 3e-15
d1x38a2214 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, 9e-14
d1tr9a_330 c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio chol 1e-09
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 388 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 75.1 bits (183), Expect = 3e-15
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 20/198 (10%)

Query: 11  YWSPNVNIFRDPRWGRGQETPGEDPVLTGKY-----------AASYVRGLQGNTGSRLKV 59
            ++P + + RDPRWGR  E+  ED  +                  +  G+    G   KV
Sbjct: 143 AFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKN-KV 201

Query: 60  AACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN 119
           AAC KH+      +   VD  + N  +  ++     ++P     ++  V++VM SY+  N
Sbjct: 202 AACAKHFVG----DGGTVDGINENNTIINREGLMNIHMPAYKNAMDKGVSTVMISYSSWN 257

Query: 120 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGVACG 179
           G    A+ D++   +    +  G+++SD + +     T         +   +I AG    
Sbjct: 258 GVKMHANQDLVTGYLKDTLKFKGFVISDWEGID--RITTPAGSDYSYSVKASILAG--LD 313

Query: 180 YTTPLQGISRYAKTIHQA 197
                    ++   +   
Sbjct: 314 MIMVPNKYQQFISILTGH 331
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 Back     information, alignment and structure
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
d1x38a1388 Beta-D-glucan exohydrolase, N-terminal domain {Bar 100.0
d1tr9a_330 Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 100.0
d1x38a2214 Beta-D-glucan exohydrolase, C-terminal domain {Bar 99.97
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 96.06
d4ubpb_122 Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 92.35
d2q3za2114 Transglutaminase, two C-terminal domains {Human (H 92.26
d1ex0a2112 Transglutaminase, two C-terminal domains {Human (H 88.99
d1ejxb_101 Urease, beta-subunit {Klebsiella aerogenes [TaxId: 88.33
d1vjja2115 Transglutaminase, two C-terminal domains {Human (H 86.04
d1g0da2112 Transglutaminase, two C-terminal domains {Red sea 84.96
d2vzsa2122 Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato 83.45
d1e9ya1133 Urease, beta-subunit {Helicobacter pylori [TaxId: 82.04
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=4.1e-41  Score=349.71  Aligned_cols=162  Identities=27%  Similarity=0.481  Sum_probs=143.2

Q ss_pred             ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCC-----------CCCcEEEeecccccCCccCCC
Q 010408            8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTG-----------SRLKVAACCKHYTAYDLDNWN   75 (511)
Q Consensus         8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~-----------~~~~V~a~~KHF~g~g~~~~~   75 (511)
                      |+|+ |||++||+|||||||++|||||||+|+++|+. +|+++|+...           +..||+||+|||||||++.  
T Consensus       139 Gin~~~aPv~Dv~~~p~~gr~~et~geDp~l~~~~~~-~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~--  215 (388)
T d1x38a1         139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTE-LIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTV--  215 (388)
T ss_dssp             TCCEECCCBCCCCSCTTSTTGGGSSCSSHHHHHHGGG-HHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCG--
T ss_pred             CCccccCCcccccccccccccccCccCCHHHHHHHHh-hhhhhhchhhhhhcccccccccccCcceeeeeeecCCccc--
Confidence            9999 99999999999999999999999999999964 7888887531           2348999999999999875  


Q ss_pred             CCCccccccccCHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccc
Q 010408           76 GVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLY  155 (511)
Q Consensus        76 ~~~r~~~~~~~s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~  155 (511)
                       .+++...+.+++++|+|+||+||+++|++| +.+|||+||.+||+|+|.|+++|+++||+||||+|+|||||++|+.+.
T Consensus       216 -~~~~~~~~~i~~~~l~~~~l~pf~~~i~~g-~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~  293 (388)
T d1x38a1         216 -DGINENNTIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRIT  293 (388)
T ss_dssp             -GGCTTCEECCCHHHHHHHTSHHHHHHHHTT-CCEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGS
T ss_pred             -cCccccccchhHHHHHHHhhhhhHHHHhhc-cccccccccccCCccccCCHHHHHHHHHhccCCCceeecchhhccccc
Confidence             245555678999999999999999999987 899999999999999999999999999999999999999999999885


Q ss_pred             cCCCCCCCHHHHHHHchhccc
Q 010408          156 NTQHYTRTPEEAAADAIKAGV  176 (511)
Q Consensus       156 ~~~~~~~~~~~a~~~ai~AG~  176 (511)
                      .  .+.....++++.+++||.
T Consensus       294 ~--~~~~~~~~~~~~a~~ag~  312 (388)
T d1x38a1         294 T--PAGSDYSYSVKASILAGL  312 (388)
T ss_dssp             S--STTTTHHHHHHHHHHHTC
T ss_pred             c--ccCCcHHHHHHHHHhcCC
Confidence            3  334456788899999993
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure
>d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure