Citrus Sinensis ID: 010413

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
MAGGGEKKSKANATGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY
ccccccccccccccccccccccHHHccccccccccccHHHHHHHHHHHcccccccccccEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccEEEEEccccccccccEEEcccccccccHHHHHHHcccccccccccccccEEEEEcccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccEEEEEEEcccccEEEcccccccHHHHHHHccEEEEcccccEEEEEEEEccccHHHEEEEEEEEcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHccccEEEEEccccccccEEEEEEcccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHccccEEEEEccccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccEEEEEEEcc
cccccccccccccccccccccHHcccEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHccccccEEEEEccccccccccEEEccccHHHHHHHHHHHHHHHccccHHHcccccEEEEEEccccccEcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccEEEEEEEEcccccEEEccccccccccHHHHEEEEEEcccccEEEEEEccccEEEEEEEEEEEEEccccccEcccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccEccEEEccccEEEEEccHHHHcccEEEEEEccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHcccEEEEcccccHHHHHHHHHHcccccccccEEEccccccccccccEEEccccccEEEEEEEccc
magggekkskanatgggkkkevkketglglsykkdenfgEWYSEVVVNGEMIeyydisgcyiirpWAMSIWETMQKFFDAEIKKMkiqncyfplfvsptvlqkekdhiegfapeVAWVTksgesdlevpiairptsetvmypyyskwirghrdlplklNQWCNVVrwefsnptpfirsrEFLWQEGhtafatkseadDEVLQILELYRRIYEEFLavpvikgkksELEKFAGGLYTTTVeafipntgrgiqgatshclgqNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHgddkglvlpprvasvQVIVvpvpykdadtqgiFDACTATVETLCEAgicanmdsrdnyspgwkyshwemkgvplrieigpkdlakNQVRavrrdngakvdlprSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKmilapwcdeeevEKDVKARTKgemgaaktlcspleqpeipegtlcfasgkpakrwsywgrsy
magggekkskanatgggkkkevkketglglsykkdenfgeWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAwvtksgesdlevpiairptsetvmYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAfatkseaddeVLQILELYRRIYEEFLavpvikgkkseLEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQvravrrdngakvdlprsslVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKmilapwcdeeeVEKDVKARTKGEMGAAKTlcspleqpeipegtlcfasgkpakrwsywgrsy
MAGGGEKKSKANAtgggkkkevkketglglSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLpprvasvqvivvpvpYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY
******************************SYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAV*************SLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEE*******************************GTLCFASGKPAKRWSYW****
*********************************KDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY
*************************TGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY
**********************KKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY
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MAGGGEKKSKANATGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query511 2.2.26 [Sep-21-2011]
Q8CGC71512 Bifunctional glutamate/pr yes no 0.956 0.323 0.567 1e-168
O60155716 Putative proline--tRNA li yes no 0.945 0.674 0.563 1e-167
P078141512 Bifunctional glutamate/pr yes no 0.956 0.323 0.553 1e-166
P286681714 Bifunctional glutamate/pr no no 0.978 0.291 0.544 1e-164
Q8I5R7746 Proline--tRNA ligase OS=P yes no 0.956 0.655 0.548 1e-163
P38708688 Putative proline--tRNA li yes no 0.947 0.703 0.531 1e-158
Q8SSD7520 Proline--tRNA ligase OS=E yes no 0.945 0.928 0.478 1e-144
A0Q2I3478 Proline--tRNA ligase OS=C yes no 0.906 0.968 0.441 1e-118
A8MLB3480 Proline--tRNA ligase OS=A yes no 0.904 0.962 0.434 1e-115
B8I5R4478 Proline--tRNA ligase OS=C yes no 0.906 0.968 0.433 1e-115
>sp|Q8CGC7|SYEP_MOUSE Bifunctional glutamate/proline--tRNA ligase OS=Mus musculus GN=Eprs PE=1 SV=4 Back     alignment and function desciption
 Score =  592 bits (1525), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/504 (56%), Positives = 368/504 (73%), Gaps = 15/504 (2%)

Query: 23   KKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEI 82
            KK+T LGL  KK+EN  EWYS+V+   EMIEYYD+SGCYI+RPW+ SIWE+++ FFDAEI
Sbjct: 1009 KKQTRLGLEAKKEENLAEWYSQVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEI 1068

Query: 83   KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYP 142
            KK+ ++NCYFP+FVS   L+KEK+HIE FAPEVAWVT+SG+++L  PIAIRPTSETVMYP
Sbjct: 1069 KKLGVENCYFPIFVSQAALEKEKNHIEDFAPEVAWVTRSGKTELAEPIAIRPTSETVMYP 1128

Query: 143  YYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQ 202
             Y+KW++ HRDLP++LNQWCNVVRWEF +P PF+R+REFLWQEGH+AFAT  EA DEVLQ
Sbjct: 1129 AYAKWVQSHRDLPVRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAADEVLQ 1188

Query: 203  ILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNF 262
            ILELY R+YEE LA+PV++G+K+E EKFAGG YTTT+EAFI  +GR IQGATSH LGQNF
Sbjct: 1189 ILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTIEAFISASGRAIQGATSHHLGQNF 1248

Query: 263  SKMFEIIFENEK--GEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVP 320
            SKM EI+FE+ K  GEK  A+Q SW  TTRTIGVMVMVHGD+ GLVLPPRVASVQV+V+P
Sbjct: 1249 SKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMVMVHGDNMGLVLPPRVASVQVVVIP 1308

Query: 321  VPYKDA----DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIE 376
                +A    D + +   C      L  A I   +D RDNYSPGWK++HWE+KGVP+R+E
Sbjct: 1309 CGITNALSEEDREALMAKCNEYRRRLLGANIRVRVDLRDNYSPGWKFNHWELKGVPVRLE 1368

Query: 377  IGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVK 436
            +GP+D+   Q  AVRRD G K+ +       +++++L++IQ +LF  A +     + +  
Sbjct: 1369 VGPRDMKSCQFVAVRRDTGEKLTIAEKEAEAKLEKVLEDIQLNLFTRASEDLKTHMVVSN 1428

Query: 437  TWDEFVEALGQRKMILAPWCDEEEVE---KDVKARTKG-EMGA----AKTLCSPLEQP-E 487
            T ++F + L   K+   P+C E + E   K + AR +  E GA    AK+LC P     E
Sbjct: 1429 TLEDFQKVLDAGKVAQIPFCGEIDCEDWIKKMTARDQDVEPGAPSMGAKSLCIPFNPLCE 1488

Query: 488  IPEGTLCFASGKPAKRWSYWGRSY 511
            +  G +C     PAK ++ +GRSY
Sbjct: 1489 LQPGAMCVCGKNPAKFYTLFGRSY 1512
Catalyzes the attachment of the cognate amino acid to the corresponding tRNA in a two-step reaction: the amino acid is first activated by ATP to form a covalent intermediate with AMP and is then transferred to the acceptor end of the cognate tRNA.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5
>sp|O60155|YHY6_SCHPO Putative proline--tRNA ligase C19C7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C7.06 PE=3 SV=1 Back     alignment and function description
>sp|P07814|SYEP_HUMAN Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5 Back     alignment and function description
>sp|P28668|SYEP_DROME Bifunctional glutamate/proline--tRNA ligase OS=Drosophila melanogaster GN=Aats-glupro PE=1 SV=2 Back     alignment and function description
>sp|Q8I5R7|SYP_PLAF7 Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7) GN=proRS PE=1 SV=1 Back     alignment and function description
>sp|P38708|YHI0_YEAST Putative proline--tRNA ligase YHR020W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR020W PE=1 SV=1 Back     alignment and function description
>sp|Q8SSD7|SYP_ENCCU Proline--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU02_1360 PE=1 SV=1 Back     alignment and function description
>sp|A0Q2I3|SYP_CLONN Proline--tRNA ligase OS=Clostridium novyi (strain NT) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|A8MLB3|SYP_ALKOO Proline--tRNA ligase OS=Alkaliphilus oremlandii (strain OhILAs) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|B8I5R4|SYP_CLOCE Proline--tRNA ligase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=proS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
224064768498 predicted protein [Populus trichocarpa] 0.968 0.993 0.876 0.0
356572846515 PREDICTED: bifunctional aminoacyl-tRNA s 0.990 0.982 0.857 0.0
449468780511 PREDICTED: bifunctional glutamate/prolin 1.0 1.0 0.859 0.0
118486938498 unknown [Populus trichocarpa] 0.951 0.975 0.868 0.0
356505683515 PREDICTED: bifunctional aminoacyl-tRNA s 0.951 0.943 0.862 0.0
357511557529 Bifunctional aminoacyl-tRNA synthetase [ 0.947 0.914 0.863 0.0
388491056529 unknown [Medicago truncatula] 0.947 0.914 0.861 0.0
15228692530 prolyl-tRNA synthetase [Arabidopsis thal 0.974 0.939 0.825 0.0
297817558522 predicted protein [Arabidopsis lyrata su 0.968 0.948 0.826 0.0
225437777516 PREDICTED: bifunctional aminoacyl-tRNA s 0.949 0.939 0.845 0.0
>gi|224064768|ref|XP_002301553.1| predicted protein [Populus trichocarpa] gi|222843279|gb|EEE80826.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/495 (87%), Positives = 472/495 (95%)

Query: 17  GKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQK 76
           GKKKEVKKETGLGL++KK+ENFGEWYSEVVVNGEMIEYYDISGCYI+RPW+MSIWETMQ 
Sbjct: 4   GKKKEVKKETGLGLTFKKEENFGEWYSEVVVNGEMIEYYDISGCYILRPWSMSIWETMQA 63

Query: 77  FFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 136
           FFD EIKKMKI+NCYFPLFVS +VLQKEKDHIEGFAPEVAWVTK+G+SDLEVP+AIRPTS
Sbjct: 64  FFDVEIKKMKIKNCYFPLFVSSSVLQKEKDHIEGFAPEVAWVTKAGKSDLEVPVAIRPTS 123

Query: 137 ETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA 196
           ETVMYPY+SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA+K EA
Sbjct: 124 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFASKQEA 183

Query: 197 DDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSH 256
           D+EVLQILELYRRIYEEFLA+PVIKGKKSE+EKFAGGLYTT+VEAFIPNTGRGIQGATSH
Sbjct: 184 DEEVLQILELYRRIYEEFLAIPVIKGKKSEMEKFAGGLYTTSVEAFIPNTGRGIQGATSH 243

Query: 257 CLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQV 316
           CLGQNF+KMFEI FENEKGEK MAWQNSWAY+TRTIGVMVMVHGDDKGLVLPP+VASVQV
Sbjct: 244 CLGQNFAKMFEINFENEKGEKGMAWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQV 303

Query: 317 IVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIE 376
           IVVPVPYKDADTQGIFDAC ATV+TLCEAGI A  D R+NYSPGWKYSHWEMKGVPLRIE
Sbjct: 304 IVVPVPYKDADTQGIFDACAATVDTLCEAGIRAEADFRENYSPGWKYSHWEMKGVPLRIE 363

Query: 377 IGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVK 436
           IGPKDLA NQVRAVRRDN AKVD+ R SL+E++K++LD+IQ+ LF AAKQ+RDACIQ+VK
Sbjct: 364 IGPKDLANNQVRAVRRDNAAKVDISRDSLMEKVKDMLDDIQQRLFDAAKQKRDACIQVVK 423

Query: 437 TWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFA 496
           TW EF EAL QRKMILAPWCDEEEVE+DVK RT+GEMGAAK+LCSP +QPE+PEGT CFA
Sbjct: 424 TWGEFKEALSQRKMILAPWCDEEEVERDVKERTRGEMGAAKSLCSPFDQPELPEGTACFA 483

Query: 497 SGKPAKRWSYWGRSY 511
           SGKPAK+W+YWGRSY
Sbjct: 484 SGKPAKKWTYWGRSY 498

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356572846|ref|XP_003554576.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|449468780|ref|XP_004152099.1| PREDICTED: bifunctional glutamate/proline--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118486938|gb|ABK95302.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356505683|ref|XP_003521619.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|357511557|ref|XP_003626067.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] gi|355501082|gb|AES82285.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388491056|gb|AFK33594.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|15228692|ref|NP_191771.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|30695549|ref|NP_850736.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|6899922|emb|CAB71872.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gi|16648885|gb|AAL24294.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gi|22136084|gb|AAM91120.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gi|332646791|gb|AEE80312.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|332646792|gb|AEE80313.1| prolyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297817558|ref|XP_002876662.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322500|gb|EFH52921.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225437777|ref|XP_002281375.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase [Vitis vinifera] gi|297744088|emb|CBI37058.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query511
TAIR|locus:2098053530 AT3G62120 [Arabidopsis thalian 0.939 0.905 0.804 9.8e-222
DICTYBASE|DDB_G0284197548 proS "prolyl-tRNA synthetase" 0.894 0.833 0.610 1.3e-155
WB|WBGene00004189581 pars-1 [Caenorhabditis elegans 0.935 0.822 0.548 1.6e-148
ZFIN|ZDB-GENE-030131-6381683 eprs "glutamyl-prolyl-tRNA syn 0.937 0.284 0.538 9.3e-146
UNIPROTKB|F1P1791601 EPRS "Uncharacterized protein" 0.935 0.298 0.531 7.5e-144
MGI|MGI:978381512 Eprs "glutamyl-prolyl-tRNA syn 0.937 0.316 0.542 9.6e-144
RGD|13109521486 Eprs "glutamyl-prolyl-tRNA syn 0.937 0.322 0.542 3.3e-143
UNIPROTKB|F1LMJ91512 Eprs "Protein Eprs" [Rattus no 0.937 0.316 0.542 3.3e-143
UNIPROTKB|P078141512 EPRS "Bifunctional glutamate/p 0.937 0.316 0.532 1.4e-142
UNIPROTKB|G3X6L91511 EPRS "Uncharacterized protein" 0.937 0.317 0.536 1.8e-142
TAIR|locus:2098053 AT3G62120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2141 (758.7 bits), Expect = 9.8e-222, P = 9.8e-222
 Identities = 387/481 (80%), Positives = 429/481 (89%)

Query:    31 SYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNC 90
             S KKDENFGEWYSEV    +MIEYYDISGCYI+RPW+M+IWE MQ FFDAEIKKMK++NC
Sbjct:    51 SVKKDENFGEWYSEVCKQ-DMIEYYDISGCYILRPWSMAIWEIMQIFFDAEIKKMKVKNC 109

Query:    91 YFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRG 150
             YFPLFVSP VL+KEKDHIEGFAPEVAWVTKSG+SDLEVPIAIRPTSETVMYPYYSKWIRG
Sbjct:   110 YFPLFVSPGVLEKEKDHIEGFAPEVAWVTKSGKSDLEVPIAIRPTSETVMYPYYSKWIRG 169

Query:   151 HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 210
             HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK+EAD+EVLQILELYRRI
Sbjct:   170 HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKAEADEEVLQILELYRRI 229

Query:   211 YEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIF 270
             YEE+LAVPV+KG KSE EKFAGGLYTT+VEAFIPNTGRG+QGATSHCLGQNF+KMFEI F
Sbjct:   230 YEEYLAVPVVKGMKSENEKFAGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFAKMFEINF 289

Query:   271 ENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQG 330
             ENEK E  M WQNSWAY+TRTIGVM+M HGDDKGLVL               YKDA+TQG
Sbjct:   290 ENEKAETEMVWQNSWAYSTRTIGVMIMTHGDDKGLVLPPKVASVQVVVIPVPYKDANTQG 349

Query:   331 IFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAV 390
             I+DACTAT   LCEAGI A  D RDNYSPGWKYS WEMKGVPLRIEIGP+DL  +QVR V
Sbjct:   350 IYDACTATASALCEAGIRAEEDLRDNYSPGWKYSDWEMKGVPLRIEIGPRDLENDQVRTV 409

Query:   391 RRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKM 450
             RRDNG K D+PR SLVE +KELL++IQ++++  AKQ+R+AC+Q VKTWDEF++AL ++K+
Sbjct:   410 RRDNGVKEDIPRGSLVEHVKELLEKIQQNMYEVAKQKREACVQEVKTWDEFIKALNEKKL 469

Query:   451 ILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRS 510
             ILAPWCDEEEVE+DVKARTKGE GAAKTLCSP +QPE+PEGTLCFASGKPAK+W+YWGRS
Sbjct:   470 ILAPWCDEEEVERDVKARTKGETGAAKTLCSPFDQPELPEGTLCFASGKPAKKWTYWGRS 529

Query:   511 Y 511
             Y
Sbjct:   530 Y 530
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004827 "proline-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006433 "prolyl-tRNA aminoacylation" evidence=IEA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
DICTYBASE|DDB_G0284197 proS "prolyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00004189 pars-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-638 eprs "glutamyl-prolyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P179 EPRS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:97838 Eprs "glutamyl-prolyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310952 Eprs "glutamyl-prolyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMJ9 Eprs "Protein Eprs" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P07814 EPRS "Bifunctional glutamate/proline--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3X6L9 EPRS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A0RUI8SYP_CENSY6, ., 1, ., 1, ., 1, 50.42350.88450.9495yesno
A5I768SYP_CLOBH6, ., 1, ., 1, ., 1, 50.43090.90600.9686yesno
Q81Z76SYP2_BACAN6, ., 1, ., 1, ., 1, 50.42110.87670.8818yesno
Q63GI2SYP2_BACCZ6, ., 1, ., 1, ., 1, 50.42910.90990.9768yesno
A7FYU0SYP_CLOB16, ., 1, ., 1, ., 1, 50.43090.90600.9686yesno
C4ZC24SYP_EUBR36, ., 1, ., 1, ., 1, 50.40620.90410.9645yesno
B1L224SYP_CLOBM6, ., 1, ., 1, ., 1, 50.43510.90600.9686yesno
B0R3A3SYP_HALS36, ., 1, ., 1, ., 1, 50.39230.94120.9600yesno
Q8SSD7SYP_ENCCU6, ., 1, ., 1, ., 1, 50.47880.94520.9288yesno
B1IFI2SYP_CLOBK6, ., 1, ., 1, ., 1, 50.43090.90600.9686yesno
C1FM10SYP_CLOBJ6, ., 1, ., 1, ., 1, 50.43090.90600.9686yesno
Q73E50SYP2_BACC16, ., 1, ., 1, ., 1, 50.42910.90990.9768yesno
B3EE36SYP_CHLL26, ., 1, ., 1, ., 1, 50.41750.92560.9833yesno
Q9HS52SYP_HALSA6, ., 1, ., 1, ., 1, 50.39230.94120.9600yesno
B2A5T8SYP_NATTJ6, ., 1, ., 1, ., 1, 50.43960.84930.8985yesno
B9LUM0SYP_HALLT6, ., 1, ., 1, ., 1, 50.41340.93340.9714yesno
Q72GF9SYP_THET26, ., 1, ., 1, ., 1, 50.42910.90990.9748yesno
A0R9A0SYP2_BACAH6, ., 1, ., 1, ., 1, 50.42700.90990.9768yesno
Q8I5R7SYP_PLAF76, ., 1, ., 1, ., 1, 50.5480.95690.6554yesno
Q18JG3SYP_HALWD6, ., 1, ., 1, ., 1, 50.41090.88060.8789yesno
Q81IE9SYP2_BACCR6, ., 1, ., 1, ., 1, 50.42910.90990.9768yesno
Q5SM28SYP_THET86, ., 1, ., 1, ., 1, 50.42910.90990.9748yesno
Q8ESQ5SYP_OCEIH6, ., 1, ., 1, ., 1, 50.41920.90600.9686yesno
A5UU62SYP_ROSS16, ., 1, ., 1, ., 1, 50.40990.91380.9729yesno
Q9L4Q8SYP_CLOSD6, ., 1, ., 1, ., 1, 50.42230.90010.9563yesno
Q18CD7SYP2_CLOD66, ., 1, ., 1, ., 1, 50.4250.91380.9708yesno
B4S9D5SYP_PROA26, ., 1, ., 1, ., 1, 50.40280.91580.9729yesno
C4Z1D7SYP_EUBE26, ., 1, ., 1, ., 1, 50.42340.90600.9665yesno
A8MLB3SYP_ALKOO6, ., 1, ., 1, ., 1, 50.43480.90410.9625yesno
Q1AX25SYP_RUBXD6, ., 1, ., 1, ., 1, 50.42290.91190.9789yesno
B3EP23SYP_CHLPB6, ., 1, ., 1, ., 1, 50.41120.92560.9833yesno
Q1CXV1SYP_MYXXD6, ., 1, ., 1, ., 1, 50.40410.91580.9689yesno
A0Q2I3SYP_CLONN6, ., 1, ., 1, ., 1, 50.44140.90600.9686yesno
B4SG51SYP_PELPB6, ., 1, ., 1, ., 1, 50.40700.92560.9833yesno
B3ER64SYP_AMOA56, ., 1, ., 1, ., 1, 50.41580.91780.9551yesno
Q3ASP3SYP_CHLCH6, ., 1, ., 1, ., 1, 50.40500.92560.9833yesno
C3KUV8SYP_CLOB66, ., 1, ., 1, ., 1, 50.43510.90600.9686yesno
B3QPX3SYP_CHLP86, ., 1, ., 1, ., 1, 50.40290.92560.9833yesno
Q5V5H0SYP_HALMA6, ., 1, ., 1, ., 1, 50.38310.93930.9917yesno
Q6HNZ7SYP2_BACHK6, ., 1, ., 1, ., 1, 50.4250.90990.9768yesno
A7GIT0SYP_CLOBL6, ., 1, ., 1, ., 1, 50.43090.90600.9686yesno
P38708YHI0_YEAST6, ., 1, ., 1, ., 1, 50.53170.94710.7034yesno
B3QYP1SYP_CHLT36, ., 1, ., 1, ., 1, 50.40080.91580.9729yesno
Q8KCD1SYP_CHLTE6, ., 1, ., 1, ., 1, 50.40910.92560.9833yesno
B8I5R4SYP_CLOCE6, ., 1, ., 1, ., 1, 50.43300.90600.9686yesno
O60155YHY6_SCHPO6, ., 1, ., 1, ., 1, 50.56330.94520.6745yesno
A9KL35SYP_CLOPH6, ., 1, ., 1, ., 1, 50.41840.90410.9685yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.150.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
PRK08661477 PRK08661, PRK08661, prolyl-tRNA synthetase; Provis 0.0
TIGR00408472 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, fam 0.0
cd00778261 cd00778, ProRS_core_arch_euk, Prolyl-tRNA syntheta 1e-163
COG0442500 COG0442, ProS, Prolyl-tRNA synthetase [Translation 1e-146
cd00862202 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-antico 1e-87
cd00772264 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS 1e-67
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 4e-30
pfam0918068 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-te 7e-22
smart0094667 smart00946, ProRS-C_1, Prolyl-tRNA synthetase, C-t 2e-20
pfam0312993 pfam03129, HGTP_anticodon, Anticodon binding domai 2e-20
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 2e-17
PRK09194565 PRK09194, PRK09194, prolyl-tRNA synthetase; Provis 4e-16
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 6e-12
COG0441589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 2e-10
PRK12325439 PRK12325, PRK12325, prolyl-tRNA synthetase; Provis 3e-10
cd0073894 cd00738, HGTP_anticodon, HGTP anticodon binding do 9e-09
TIGR00409568 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa 4e-08
TIGR00418563 TIGR00418, thrS, threonyl-tRNA synthetase 1e-05
cd0086091 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon 1e-04
PRK12444639 PRK12444, PRK12444, threonyl-tRNA synthetase; Revi 1e-04
cd0086194 cd00861, ProRS_anticodon_short, ProRS Prolyl-antic 2e-04
cd00779255 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase ( 3e-04
TIGR00409568 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa 5e-04
PLN02837614 PLN02837, PLN02837, threonine-tRNA ligase 5e-04
PRK12305575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 0.002
PRK00413638 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed 0.003
cd00771298 cd00771, ThrRS_core, Threonyl-tRNA synthetase (Thr 0.004
>gnl|CDD|236327 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional Back     alignment and domain information 
 Score =  668 bits (1727), Expect = 0.0
 Identities = 236/494 (47%), Positives = 329/494 (66%), Gaps = 18/494 (3%)

Query: 19  KKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFF 78
           KK V+K T       + E+F EWY++VV   E+ +Y  + GC +I+P+  +IWE +QK  
Sbjct: 1   KKMVEKIT------PRSEDFSEWYNDVVKKAELADYSPVKGCMVIKPYGYAIWENIQKIL 54

Query: 79  DAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 138
           D   K+   +N YFPL +  ++L+KEK+H+EGFAPEVAWVT  G   LE  +A+RPTSET
Sbjct: 55  DKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSET 114

Query: 139 VMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADD 198
           ++YP Y KWI+ +RDLPL  NQW NVVRWE +   PF+R+REFLWQEGHTA AT+ EA++
Sbjct: 115 IIYPMYKKWIQSYRDLPLLYNQWVNVVRWE-TKTRPFLRTREFLWQEGHTAHATEEEAEE 173

Query: 199 EVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCL 258
           E L++LE+Y+  +E++LA+PVI GKK+E EKFAG  YT T+EA +P+ G+ +Q  TSH L
Sbjct: 174 ETLEMLEIYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGTSHYL 232

Query: 259 GQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIV 318
           GQNF+K F+I F+++ G+     Q SW  +TR IG ++M HGDDKGLVLPP++A +QV++
Sbjct: 233 GQNFAKAFDIKFQDKDGKLEYVHQTSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVI 292

Query: 319 VPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIG 378
           VP+  K+   + + +      E L +AGI   +D R + +PGWK++ WE+KGVPLRIEIG
Sbjct: 293 VPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEIG 352

Query: 379 PKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTW 438
           P+DL  N V  VRRD   K  +P   LVE++ ELL+EIQE+L+  AK+  +     V T 
Sbjct: 353 PRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLEEIQENLYEKAKEFLEENTVEVDTL 412

Query: 439 DEFVEALG-QRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFAS 497
           +EF EA+  +   + APWC +EE E+ +K  T      A   C PLEQ    E   C   
Sbjct: 413 EEFKEAIEEKGGFVKAPWCGDEECEEKIKEETG-----ATIRCIPLEQ----EKGKCIVC 463

Query: 498 GKPAKRWSYWGRSY 511
           GKPAK+   + ++Y
Sbjct: 464 GKPAKKRVLFAKAY 477

Length = 477
>gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I Back     alignment and domain information
>gnl|CDD|238401 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238439 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>gnl|CDD|238395 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|220134 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal Back     alignment and domain information
>gnl|CDD|198014 smart00946, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal Back     alignment and domain information
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|236405 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237059 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238379 cd00738, HGTP_anticodon, HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238437 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238438 cd00861, ProRS_anticodon_short, ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>gnl|CDD|238402 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II Back     alignment and domain information
>gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238394 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 511
KOG4163551 consensus Prolyl-tRNA synthetase [Translation, rib 100.0
PRK08661477 prolyl-tRNA synthetase; Provisional 100.0
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 100.0
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 100.0
PLN02837614 threonine-tRNA ligase 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 100.0
PRK12444639 threonyl-tRNA synthetase; Reviewed 100.0
PLN02908686 threonyl-tRNA synthetase 100.0
PRK09194565 prolyl-tRNA synthetase; Provisional 100.0
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 100.0
PRK03991613 threonyl-tRNA synthetase; Validated 100.0
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 100.0
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 100.0
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 100.0
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 100.0
KOG1637560 consensus Threonyl-tRNA synthetase [Translation, r 100.0
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 100.0
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 100.0
cd00862202 ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin 100.0
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 100.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 100.0
KOG2324457 consensus Prolyl-tRNA synthetase [Translation, rib 100.0
PRK05431425 seryl-tRNA synthetase; Provisional 100.0
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 100.0
TIGR00414418 serS seryl-tRNA synthetase. This model represents 100.0
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 100.0
PRK00960517 seryl-tRNA synthetase; Provisional 100.0
CHL00201430 syh histidine-tRNA synthetase; Provisional 100.0
PLN02678448 seryl-tRNA synthetase 100.0
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 100.0
PRK14894539 glycyl-tRNA synthetase; Provisional 100.0
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 100.0
PLN02320502 seryl-tRNA synthetase 100.0
PLN02734684 glycyl-tRNA synthetase 100.0
PLN02530487 histidine-tRNA ligase 100.0
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 100.0
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 100.0
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 100.0
PRK12420423 histidyl-tRNA synthetase; Provisional 100.0
PLN02972763 Histidyl-tRNA synthetase 100.0
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 100.0
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 100.0
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 100.0
KOG1936518 consensus Histidyl-tRNA synthetase [Translation, r 99.98
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.97
KOG2298599 consensus Glycyl-tRNA synthetase and related class 99.96
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 99.94
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.92
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 99.91
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 99.91
PF0918068 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; Int 99.89
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 99.81
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.79
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.78
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 99.76
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 99.74
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 99.73
PF0312994 HGTP_anticodon: Anticodon binding domain; InterPro 99.72
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.71
cd0086194 ProRS_anticodon_short ProRS Prolyl-anticodon bindi 99.7
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 99.68
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 99.66
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 99.56
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 99.52
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 99.49
PRK07080317 hypothetical protein; Validated 99.42
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.4
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.3
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 99.19
cd0085991 HisRS_anticodon HisRS Histidyl-anticodon binding d 99.14
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.04
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 98.86
PRK09350306 poxB regulator PoxA; Provisional 98.76
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.53
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 98.17
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 98.14
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 98.09
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.99
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 97.98
PRK06462335 asparagine synthetase A; Reviewed 97.93
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 97.88
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 97.82
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 97.81
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 97.79
PLN02903652 aminoacyl-tRNA ligase 97.75
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 97.75
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 97.75
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 97.74
COG0173585 AspS Aspartyl-tRNA synthetase [Translation, riboso 97.73
PTZ00417585 lysine-tRNA ligase; Provisional 97.71
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 97.71
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 97.7
PTZ00385659 lysyl-tRNA synthetase; Provisional 97.7
PRK00476588 aspS aspartyl-tRNA synthetase; Validated 97.68
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 97.67
PLN02502553 lysyl-tRNA synthetase 97.65
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 97.63
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 97.63
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 97.61
PRK12445505 lysyl-tRNA synthetase; Reviewed 97.56
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 97.55
PLN02603565 asparaginyl-tRNA synthetase 97.54
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 97.5
PLN02850530 aspartate-tRNA ligase 97.45
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 97.42
KOG2411628 consensus Aspartyl-tRNA synthetase, mitochondrial 97.39
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 97.36
PLN02221572 asparaginyl-tRNA synthetase 97.34
PLN02532633 asparagine-tRNA synthetase 97.3
PTZ00401550 aspartyl-tRNA synthetase; Provisional 97.3
PTZ00425586 asparagine-tRNA ligase; Provisional 97.27
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 97.2
PF12745273 HGTP_anticodon2: Anticodon binding domain of tRNAs 97.1
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 96.47
KOG0554446 consensus Asparaginyl-tRNA synthetase (mitochondri 96.15
KOG10351351 consensus eIF-2alpha kinase GCN2 [Translation, rib 96.1
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 96.09
KOG0556533 consensus Aspartyl-tRNA synthetase [Translation, r 95.63
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 94.74
KOG0555545 consensus Asparaginyl-tRNA synthetase [Translation 94.57
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 94.06
COG2024536 Phenylalanyl-tRNA synthetase alpha subunit (archae 93.3
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 90.6
PLN02788402 phenylalanine-tRNA synthetase 89.29
PF0918168 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; Int 87.44
PRK06253529 O-phosphoseryl-tRNA synthetase; Reviewed 84.34
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-130  Score=977.52  Aligned_cols=498  Identities=68%  Similarity=1.189  Sum_probs=480.4

Q ss_pred             cccCCCCccccccceeecceecccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeee
Q 010413           12 NATGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCY   91 (511)
Q Consensus        12 ~~~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~   91 (511)
                      .+.+.+.+...+.++..|++.++++||++||.+++.+++|+||+.++|||++.|+++.||+.|+.+++..+++.|.+++|
T Consensus        42 ~~~~~~~~~~~~~~~~~gl~~~k~~df~~WY~qVitk~emieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncY  121 (551)
T KOG4163|consen   42 KAEPSKKSAAVKKATLLGLTAKKEEDFPEWYSQVITKGEMIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCY  121 (551)
T ss_pred             ccCccccccchhhhhhcccccccccchHHHHHHHhhhhhhheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccce
Confidence            34444555677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecC
Q 010413           92 FPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSN  171 (511)
Q Consensus        92 tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~  171 (511)
                      ||+|++.++++++..|+++|++|+.|+|..|+++|++++++|||||+.++++|++|++||||||+|++||++|.|||.++
T Consensus       122 FPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~  201 (551)
T KOG4163|consen  122 FPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKH  201 (551)
T ss_pred             eeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCcccc
Q 010413          172 PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQ  251 (511)
Q Consensus       172 ~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq  251 (511)
                      +.+|+|.|||+|+|+|++|+++++|++|+.+|||+|.++|.+++++|++.|.+++.|+|+|+.|+.+||+++|..||++|
T Consensus       202 p~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQ  281 (551)
T KOG4163|consen  202 PQPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQ  281 (551)
T ss_pred             CCcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCcceEEEeeeecccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccceeeEEeCC-CCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCcc----
Q 010413          252 GATSHCLGQNFSKMFEIIFENE-KGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDA----  326 (511)
Q Consensus       252 ~gt~~~lg~~~s~~f~i~y~~~-~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~----  326 (511)
                      .+|+|+||+|||++|++.|.|+ +|.+.++|++|||+++|.|++++|.|+||.|++|||.+||+||+|||++.++.    
T Consensus       282 gaTSH~LGQNFSkmF~i~~ed~~~g~~~fv~QnSWg~sTRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~  361 (551)
T KOG4163|consen  282 GATSHHLGQNFSKMFEIVFEDPGEGEKEFVWQNSWGLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEE  361 (551)
T ss_pred             ccchhhhhHHHHHhhceeecCCCccchhheeecccccccceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchH
Confidence            9999999999999999999999 77888999999999999999999999999999999999999999999986543    


Q ss_pred             chhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHH
Q 010413          327 DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLV  406 (511)
Q Consensus       327 ~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~  406 (511)
                      +++.+.++|..+.+.|..+|||++.|+|+++++||||++||++|||+||+|||+|+++++|++.+||+++|.+|++++|.
T Consensus       362 ~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~  441 (551)
T KOG4163|consen  362 DKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLE  441 (551)
T ss_pred             HHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHH
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcceeccChhHHHHHhcCCceEEecCCCchhhhHHHHhhcccc-------ccccccc
Q 010413          407 ERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGE-------MGAAKTL  479 (511)
Q Consensus       407 ~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~wc~~~~ce~~ik~~~~~~-------~~~~~~~  479 (511)
                      ..|+++|++||.+||++|++.+++|++.+++|+||+++|++|+++++||||..+||++||++|++.       +|||++|
T Consensus       442 ~~v~elLe~iq~~m~~kA~~~rds~~~~v~~~~eF~~aL~~k~iilaPwcg~~ecE~~IK~~s~r~e~ge~apsmGAKtl  521 (551)
T KOG4163|consen  442 KTVKELLEKIQTNLYEKAKEKRDSHIVKVNTWEEFVKALDQKKIILAPWCGEIECEKDIKKRTARDEDGEEAPSMGAKTL  521 (551)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhheeeeeeHHHHHHHhccCCEEEccccCcHHHHHHHHhhhccccCCCCcccCCceee
Confidence            999999999999999999999999999999999999999999999999999999999999999852       7999999


Q ss_pred             cccCCCCCCCCCCcccccCCCcceEEeeeccC
Q 010413          480 CSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY  511 (511)
Q Consensus       480 cip~~~~~~~~~~~C~~~g~~a~~~~~~~rsY  511 (511)
                      ||||+||.  .+.+|++||++|++|+||||||
T Consensus       522 CiPf~qpe--~~~kcl~cg~~ak~~~lfGRSY  551 (551)
T KOG4163|consen  522 CIPFEQPE--LGEKCLCCGKPAKKYTLFGRSY  551 (551)
T ss_pred             eecCCCCC--CccceeccCCccceEEEecccC
Confidence            99999995  4568999999999999999999

>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [] Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
4hvc_A519 Crystal Structure Of Human Prolyl-trna Synthetase I 1e-154
1h4q_A477 Prolyl-Trna Synthetase From Thermus Thermophilus Co 1e-100
1nj1_A501 Crystal Structure Of Prolyl-Trna Synthetase From Me 2e-71
1nj8_A459 Crystal Structure Of Prolyl-Trna Synthetase From Me 4e-69
3ial_A518 Giardia Lamblia Prolyl-Trna Synthetase In Complex W 4e-58
2i4l_A458 Rhodopseudomonas Palustris Prolyl-trna Synthetase L 4e-07
2j3l_A572 Prolyl-Trna Synthetase From Enterococcus Faecalis C 1e-06
3ugq_A460 Crystal Structure Of The Apo Form Of The Yeast Mito 5e-04
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In Complex With Halofuginone And Atp Analogue Length = 519 Back     alignment and structure 
Iteration: 1

 Score =  541 bits (1394), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/494 (53%), Positives = 344/494 (69%), Gaps = 15/494 (3%)
Query: 33  KKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYF 92
           KK+EN  +WYS+V+   EMIEY+DISGCYI+RPWA +IWE ++ FFDAEIKK+ ++NCYF
Sbjct: 26  KKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYF 85
Query: 93  PLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHR 152
           P+FVS + L+KEK H+  FAPEVAWVT+SG+++L  PIAIRPTSETVMYP Y+KW++ HR
Sbjct: 86  PMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHR 145
Query: 153 DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 212
           DLP+KLNQWCNVVRWEF +P PF+R+REFLWQEGH+AFAT  EA +EVLQIL+LY ++YE
Sbjct: 146 DLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE 205
Query: 213 EFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFEN 272
           E LA+PV+KG+K+E EKFAGG YTTT+EAFI  +GR IQG TSH LGQNFSKMFEI+FE+
Sbjct: 206 ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFED 265
Query: 273 EK--GEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDA---- 326
            K  GEK  A+QNSW  TTRTIGVM MVHGD+ GLVL                 +A    
Sbjct: 266 PKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEE 325
Query: 327 DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQ 386
           D + +   C      L    I    D RDNYSPGWK++HWE+KGVP+R+E+GP+D+   Q
Sbjct: 326 DKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQ 385
Query: 387 VRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALG 446
             AVRRD G K+ +  +    +++ +L++IQ +LF  A +     + +  T ++F + L 
Sbjct: 386 FVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILD 445
Query: 447 QRKMILAPWCDEEEVE---KDVKARTKG-EMGA----AKTLCSPLEQP-EIPEGTLCFAS 497
             K++  P+C E + E   K   AR +  E GA    AK+LC P +   E+  G  C   
Sbjct: 446 SGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCG 505
Query: 498 GKPAKRWSYWGRSY 511
             PAK ++ +GRSY
Sbjct: 506 KNPAKYYTLFGRSY 519
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed With Trnapro(Cgg), Atp And Prolinol Length = 477 Back     alignment and structure
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Bound To Cysteine Sulfamoyl Adenylate Length = 501 Back     alignment and structure
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459 Back     alignment and structure
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With Prolyl- Adenylate Length = 518 Back     alignment and structure
>pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase Length = 458 Back     alignment and structure
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis Complexed With A Prolyl-Adenylate Analogue ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine) Length = 572 Back     alignment and structure
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast Mitochondrial Threonyl- Trna Synthetase Determined At 2.1 Angstrom Resolution Length = 460 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query511
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 0.0
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 0.0
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 2e-16
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 3e-16
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 2e-09
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 6e-09
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 9e-07
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 4e-05
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 4e-04
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 5e-04
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Length = 477 Back     alignment and structure
 Score =  725 bits (1874), Expect = 0.0
 Identities = 203/481 (42%), Positives = 299/481 (62%), Gaps = 14/481 (2%)

Query: 33  KKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYF 92
            + ++F EWY EV+   E+ +Y  + G  ++RP+  +IWE +Q+  D   K+   QN YF
Sbjct: 9   PQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYF 68

Query: 93  PLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHR 152
           PLF+  + L+KE +H+EGF+PE+A VT +G  +LE P+A+RPTSETV+   +SKWIR  R
Sbjct: 69  PLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWR 128

Query: 153 DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 212
           DLP  LNQW NVVRWE     PF+R+ EFLWQEGHTA AT+ EA++EV ++L +Y R+  
Sbjct: 129 DLPQLLNQWGNVVRWEM-RTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAR 187

Query: 213 EFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFEN 272
           E+ A+PVI+G K+E EKFAG +YTTT+EA + + G+ +Q  TSH LG+NF++ F+I F++
Sbjct: 188 EYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKD-GKALQAGTSHYLGENFARAFDIKFQD 246

Query: 273 EKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIF 332
              +       SW  + R IG ++M HGDD+GLVLPPR+A +QV++VP+ YKD   + + 
Sbjct: 247 RDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPI-YKDESRERVL 305

Query: 333 DACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRR 392
           +A     + L   G+  ++D RD ++PG+K+  WE+KGVP R+E+GPKDL   Q     R
Sbjct: 306 EAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASR 365

Query: 393 DNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMIL 452
             G K  LP ++L E +   LD   E L+  A   R+   + V T++ F EA+ Q    L
Sbjct: 366 LGG-KETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAV-QEGFAL 423

Query: 453 APWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAK--RWSYWGRS 510
           A  C ++  E+ ++  T      A T C P E    PE   C   G+P+   +   + ++
Sbjct: 424 AFHCGDKACERLIQEETT-----ATTRCVPFEAE--PEEGFCVRCGRPSAYGKRVVFAKA 476

Query: 511 Y 511
           Y
Sbjct: 477 Y 477
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Length = 518 Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459 Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Length = 572 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346 Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Length = 471 Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465 Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
4hvc_A519 Bifunctional glutamate/proline--tRNA ligase; ligas 100.0
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 100.0
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 100.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 100.0
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 100.0
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 100.0
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 100.0
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 100.0
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 100.0
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 100.0
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 100.0
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 100.0
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 100.0
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 100.0
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 100.0
3err_A536 Fusion protein of microtubule binding domain from 100.0
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 100.0
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 100.0
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 100.0
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 100.0
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 100.0
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 100.0
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 100.0
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 99.97
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 99.93
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 99.92
1v95_A130 Nuclear receptor coactivator 5; coactivator indepe 99.71
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 99.7
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.59
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.25
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 98.97
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 98.65
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 98.6
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 98.56
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 98.52
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 98.45
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 98.32
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 98.3
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 98.08
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 98.06
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 98.04
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.95
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 97.85
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 97.83
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 97.8
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 97.8
4ah6_A617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 97.69
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 97.52
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.2
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 97.2
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 97.1
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 96.43
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 96.09
2odr_B648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.67
2odr_A665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.66
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.65
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 95.48
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.38
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 93.24
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 91.54
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 90.98
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 90.53
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 89.83
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.1e-120  Score=970.23  Aligned_cols=497  Identities=55%  Similarity=1.022  Sum_probs=453.5

Q ss_pred             CCCCccccccceeecceecccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeec
Q 010413           15 GGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPL   94 (511)
Q Consensus        15 ~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~   94 (511)
                      |.|....++.+.+.|++.++++||++||++|+++++++|+.+++|+++|+|.|+.+|++|++++++.+.++||++|+||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~f~~wy~~l~~~~~lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~   87 (519)
T 4hvc_A            8 GSGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPM   87 (519)
T ss_dssp             ---------------CCSCTTTCHHHHHHHHHHHTTCEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCS
T ss_pred             CCCCCCCccccceecCccCcccCchHHHHHHHHHCCCeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccc
Confidence            44555556777889999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             ccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCC
Q 010413           95 FVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTP  174 (511)
Q Consensus        95 l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~G  174 (511)
                      |++.++|.+++||+++|.++||+|++.++.+++++++||||+|++++++|+++++||++||+|++|||+|||||.+|++|
T Consensus        88 l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~G  167 (519)
T 4hvc_A           88 FVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQP  167 (519)
T ss_dssp             EEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBT
T ss_pred             cccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCC
Confidence            99999998789999999999999999875445568999999999999999999999999999999999999999989999


Q ss_pred             cccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCccccccc
Q 010413          175 FIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGAT  254 (511)
Q Consensus       175 l~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt  254 (511)
                      |+|+|||+|+|+|+|||+++++++|+..++++|.++|+.|+++||+++.++++++|.|+.++++||+++|++||++|+||
T Consensus       168 l~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT  247 (519)
T 4hvc_A          168 FLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGT  247 (519)
T ss_dssp             TTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEE
T ss_pred             CcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecc
Confidence            99999999999999999999999999999999999999985599999999999999999999999999999999999999


Q ss_pred             ccccccccccceeeEEeCC--CCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccC----ccch
Q 010413          255 SHCLGQNFSKMFEIIFENE--KGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYK----DADT  328 (511)
Q Consensus       255 ~~~lg~~~s~~f~i~y~~~--~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~----~~~~  328 (511)
                      +|+||++||++|+++|.|+  +|+++++|++|||+.+|+|++|+|+|+|+.|++||+++||+||+|||++.+    +++.
T Consensus       248 ~~~Lg~~~s~~~~i~y~d~~~~g~~~~vh~~~~Gi~~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~  327 (519)
T 4hvc_A          248 SHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDK  327 (519)
T ss_dssp             EEEEETHHHHHHTCEEECTTSTTCEEECEEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHH
T ss_pred             cccccchhhhhcCcEEeccccCCCEEEEEEccccHHHHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhh
Confidence            9999999999999999996  588889999999998999999999999999999999999999999999831    1123


Q ss_pred             hHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHH
Q 010413          329 QGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVER  408 (511)
Q Consensus       329 ~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~  408 (511)
                      +++.++|.+|++.|+++||+|++|+++++++|+||++|+++||||+|+||++|+++|+|+|++|++++|..|+++++++.
T Consensus       328 e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~  407 (519)
T 4hvc_A          328 EALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETK  407 (519)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHH
Confidence            56889999999999999999999999845899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcceeccChhHHHHHhcCCceEEecCCCchhhhHHHHhhccc--------ccccccccc
Q 010413          409 IKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKG--------EMGAAKTLC  480 (511)
Q Consensus       409 i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~wc~~~~ce~~ik~~~~~--------~~~~~~~~c  480 (511)
                      |.++|++||++||+||++++++||+.++|||||+++|++||||++||||+.+||++||++|++        .+||||+||
T Consensus       408 l~~ll~~i~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~e~~ik~~~~~~~~~~~~~~~~~~~~~~  487 (519)
T 4hvc_A          408 LQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLC  487 (519)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHEEECCSHHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHHC----------CCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHhccccccccccccCCceeee
Confidence            999999999999999999999999999999999999999999999999999999999999853        368999999


Q ss_pred             ccCCCCC-CCCCCcccccCCCcceEEeeeccC
Q 010413          481 SPLEQPE-IPEGTLCFASGKPAKRWSYWGRSY  511 (511)
Q Consensus       481 ip~~~~~-~~~~~~C~~~g~~a~~~~~~~rsY  511 (511)
                      |||+++. ...+++|++||+||+.|++|||||
T Consensus       488 ~p~~~~~~~~~~~~c~~~~~~a~~~~~~~~~y  519 (519)
T 4hvc_A          488 IPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY  519 (519)
T ss_dssp             EESSCSSCCCTTCBCCC--CBCCEEEEEECBC
T ss_pred             ccCCCcccCCCCCcccccCCcceEEEEEEEeC
Confidence            9999874 334568999999999999999999
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 511
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 4e-53
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 3e-51
d1nj1a3265 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS 1e-45
d1hc7a1127 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS 7e-25
d1nj1a1127 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS 4e-24
d1seta2311 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS 3e-22
d1nj8a1126 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS 4e-22
d1g5ha1127 c.51.1.1 (A:343-469) The aaRS-like accessory subun 1e-21
d1nj1a271 d.68.5.1 (A:411-481) C-terminal domain of ProRS {A 6e-17
d1qf6a1110 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (Thr 8e-16
d1hc7a374 d.68.5.1 (A:404-477) C-terminal domain of ProRS {T 1e-15
d1qf6a4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 5e-15
d1atia1111 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS 7e-13
d1qe0a195 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (His 1e-11
d1nyra1113 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (Thr 2e-11
d1kmma199 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (His 3e-09
d1h4vb196 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (His 1e-08
d1wu7a197 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (His 5e-07
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

 Score =  178 bits (453), Expect = 4e-53
 Identities = 99/267 (37%), Positives = 154/267 (57%), Gaps = 4/267 (1%)

Query: 38  FGEWYSEVVVNGEMIEY-YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFV 96
           F EWYS+++   E+ +  Y I GC +  P+   I     +     + +       FP+ +
Sbjct: 4   FSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLI 63

Query: 97  SPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPL 156
              +L KE +HI+GF  EV WVT  G++ L+V +A+RPTSET +Y     W++ H DLP+
Sbjct: 64  PEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPI 123

Query: 157 KLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215
           K+ Q  N  R+E  +  P IR RE + ++E HTA +TK EA+++V + + +Y++ ++   
Sbjct: 124 KIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTL- 182

Query: 216 AVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKG 275
            +P +  K+ E +KF G  YT   +  I   GR +Q AT H LGQNFSK FEIIFE   G
Sbjct: 183 GIPYLISKRPEWDKFPGAEYTMAFD-TIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTG 241

Query: 276 EKAMAWQNSWAYTTRTIGVMVMVHGDD 302
           +K  A+Q  +  + R I  ++ +HGD+
Sbjct: 242 DKDYAYQTCYGISDRVIASIIAIHGDE 268
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 127 Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311 Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 126 Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 71 Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]} Length = 74 Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Length = 291 Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 111 Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 95 Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 113 Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99 Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query511
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 100.0
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 100.0
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 100.0
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 100.0
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 100.0
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 100.0
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 100.0
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 99.96
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 99.96
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 99.95
d1hc7a374 C-terminal domain of ProRS {Thermus thermophilus [ 99.91
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.9
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.9
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.89
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 99.89
d1nj1a271 C-terminal domain of ProRS {Arhaeon (Methanothermo 99.89
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 99.86
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.82
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 99.81
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 99.79
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 99.78
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 99.77
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 99.76
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.71
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.69
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.69
d1h4vb196 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.64
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 99.38
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 98.01
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 97.89
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 97.87
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.82
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 97.75
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 97.64
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.54
d1v95a_130 Nuclear receptor coactivator 5 (KIAA1637) {Human ( 97.36
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.28
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 91.86
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

Probab=100.00  E-value=2.1e-56  Score=442.65  Aligned_cols=264  Identities=37%  Similarity=0.732  Sum_probs=248.1

Q ss_pred             ChhhhHHHhhhccceeeee-eeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcce
Q 010413           37 NFGEWYSEVVVNGEMIEYY-DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEV  115 (511)
Q Consensus        37 ~~~~~~~~~~~~a~~~d~~-~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~em  115 (511)
                      ||++||++|++||+|+|+. +++|+++|+|.|++|+++|++++++++.++||++|.||+|.+.++|.++++|++.+.++|
T Consensus         3 ~~~~~y~el~~k~~L~d~~~~v~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~   82 (268)
T d1nj8a3           3 EFSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEV   82 (268)
T ss_dssp             CHHHHHHHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGC
T ss_pred             chHHHHHHHHHHcCCcccCCCCCccEEECccHHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccce
Confidence            7999999999999999984 679999999999999999999999999999999999999999999988888999999999


Q ss_pred             eeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhh-cccCcccccChh
Q 010413          116 AWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKS  194 (511)
Q Consensus       116 y~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~-q~e~~~~~~~~e  194 (511)
                      |.++..+..+.+++++||||+|++++.+|+++++|||+||+|++|+|+|||+|.++..||+|+|||+ |+|+|+++++.+
T Consensus        83 ~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~  162 (268)
T d1nj8a3          83 YWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKE  162 (268)
T ss_dssp             EEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHH
T ss_pred             eEEeccccccchhhhhcccCCCchhHHhhhhhccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccc
Confidence            9999876555567899999999999999999999999999999999999999988888999999997 567788788899


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCcccccccccccccccccceeeEEeCCC
Q 010413          195 EADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEK  274 (511)
Q Consensus       195 ~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~  274 (511)
                      ++++++..++++|.+||+.++ +|+.++.++.++.+.++.+..++++++| .||.+|++|++++|+++|++|+++|.+++
T Consensus       163 ~~~~~~~~~~~~y~~if~~l~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~e~~t~~~lg~~~s~~f~l~y~~~d  240 (268)
T d1nj8a3         163 EAENQVKEAISIYKKFFDTLG-IPYLISKRPEWDKFPGAEYTMAFDTIFP-DGRTMQIATVHNLGQNFSKTFEIIFETPT  240 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-CCCEEEEECTTSCCTTCSEEEEEEEECT-TSCEEEEEEEEEEETHHHHHTTCEEECTT
T ss_pred             hhhHHHHHHHHHHHHHHHhcC-cceeeccccccccccchhcccchhhhhh-ccccEEEeeecccCCCcChhcCCEEECCC
Confidence            999999999999999999998 8999999988888888888889998887 59999999999999999999999999999


Q ss_pred             CceeeeeeeccccccceeeEEEEEeeCC
Q 010413          275 GEKAMAWQNSWAYTTRTIGVMVMVHGDD  302 (511)
Q Consensus       275 g~~~~v~~~~~Gi~eRli~~Lie~~~d~  302 (511)
                      |+++++|++++|+.+|+|++|||+|+||
T Consensus       241 g~~~~~h~~~~G~~eR~ia~liE~h~D~  268 (268)
T d1nj8a3         241 GDKDYAYQTCYGISDRVIASIIAIHGDE  268 (268)
T ss_dssp             SSEEECEEEEEEECTHHHHHHHHHHCBT
T ss_pred             CCCcceeeccCcHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999985
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure