Citrus Sinensis ID: 010421
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 511 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LMA1 | 530 | Probable flavin-containin | yes | no | 0.982 | 0.947 | 0.721 | 0.0 | |
| Q9FKE7 | 459 | Putative flavin-containin | no | no | 0.868 | 0.967 | 0.607 | 1e-171 | |
| Q8SPQ7 | 532 | Dimethylaniline monooxyge | yes | no | 0.819 | 0.787 | 0.274 | 8e-31 | |
| Q04799 | 533 | Dimethylaniline monooxyge | no | no | 0.827 | 0.793 | 0.255 | 3e-30 | |
| P97501 | 534 | Dimethylaniline monooxyge | no | no | 0.810 | 0.775 | 0.269 | 8e-30 | |
| Q6IRI9 | 535 | Dimethylaniline monooxyge | no | no | 0.814 | 0.777 | 0.263 | 4e-29 | |
| O60774 | 539 | Putative dimethylaniline | yes | no | 0.825 | 0.782 | 0.257 | 1e-28 | |
| P17635 | 535 | Dimethylaniline monooxyge | no | no | 0.825 | 0.788 | 0.272 | 2e-28 | |
| P49326 | 533 | Dimethylaniline monooxyge | yes | no | 0.827 | 0.793 | 0.249 | 2e-28 | |
| P49109 | 533 | Dimethylaniline monooxyge | no | no | 0.849 | 0.814 | 0.251 | 6e-28 |
| >sp|Q9LMA1|FMO1_ARATH Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/509 (72%), Positives = 426/509 (83%), Gaps = 7/509 (1%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
S++AIIGAGVSGLAA K L HHNP VFEASDS+GG+W+SC+Y +TKLQS R DYEF+DFP
Sbjct: 11 SRVAIIGAGVSGLAAAKNLVHHNPTVFEASDSVGGVWRSCTYETTKLQSARVDYEFSDFP 70
Query: 65 WPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLET---TDSG--G 118
WPN RDD FP Y EILDYLESYAKHFD+ K ++F SKV+EVRF G ET D G G
Sbjct: 71 WPNNRDDTTFPPYLEILDYLESYAKHFDLLKFMKFGSKVIEVRFIGDGETPQMVDLGAYG 130
Query: 119 NLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVL 178
NLLP G PVWEVAVQ +S IQ + FEF+VVCTGKYGDVP IPAFP KGPE+F+G+V+
Sbjct: 131 NLLP-GKPVWEVAVQIGDSGDIQWHAFEFVVVCTGKYGDVPRIPAFPAKKGPEMFQGKVM 189
Query: 179 HSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238
HS+DYCKL+KE AS LL KKVAV+GFKKSAIDLA E A +NQG G+ CTM+VRTTHW
Sbjct: 190 HSMDYCKLEKEEASTLLSGKKVAVIGFKKSAIDLALESALANQGEGGKACTMVVRTTHWG 249
Query: 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLP 298
+PHY +WGLPFF+FYS+R SQFLH PNQS LRTL CLL S LR VSKFIESY+LWKLP
Sbjct: 250 IPHYWVWGLPFFLFYSSRASQFLHDRPNQSFLRTLFCLLFSLLRAVVSKFIESYVLWKLP 309
Query: 299 LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKL 358
L KYGLKP+H FEEDYASCQMAI+PE FF EA+KG I FK++SKWWF++ G+ FED T L
Sbjct: 310 LEKYGLKPNHSFEEDYASCQMAIIPENFFEEADKGMIRFKKSSKWWFYEEGIVFEDGTTL 369
Query: 359 EADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVS 418
EADVVIL TGYDGKKKLKA +PEPF++ LE PSG++PLYRGTIHPLIPNM FVGY++S S
Sbjct: 370 EADVVILATGYDGKKKLKAIVPEPFRTWLEFPSGVMPLYRGTIHPLIPNMGFVGYVQSSS 429
Query: 419 NLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSD 478
NLHT+ELRS+WLSRL+D+KF+LPS EKML+Q KEMEV + S+RFYKRHCISTFSI H+D
Sbjct: 430 NLHTSELRSMWLSRLVDEKFRLPSKEKMLDQFLKEMEVTRNSSRFYKRHCISTFSIQHAD 489
Query: 479 EICEEMGWNAWRKRNWLLEAFSPYGSKDY 507
++C +MG N WRK N+LLEAFSPYGS+DY
Sbjct: 490 DMCNDMGLNPWRKSNFLLEAFSPYGSQDY 518
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Required for the establishment of systemic acquired resistance (SAR). Not involved in local defense mechanisms. Confers a salicylic acid-dependent (SA) resistance to virulent pathogens such as P.syringae pv tomato and H.parasitica. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: - |
| >sp|Q9FKE7|FMO2_ARATH Putative flavin-containing monooxygenase 2 OS=Arabidopsis thaliana GN=FMO2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 601 bits (1550), Expect = e-171, Method: Compositional matrix adjust.
Identities = 297/489 (60%), Positives = 358/489 (73%), Gaps = 45/489 (9%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEF 60
M S++AIIGAGVSGLAA K L H+P VFEASDSIGG+W+ C+Y +TKLQS R YE
Sbjct: 7 MHTSSRVAIIGAGVSGLAAAKHLARHHPQVFEASDSIGGVWRKCTYETTKLQSVRVSYEL 66
Query: 61 TDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG--- 117
+DF WPNR + FP+Y ++LDYLE+YAKHF++ K ++FNSKVVE+RF G +T G
Sbjct: 67 SDFLWPNRGESSFPTYVDVLDYLEAYAKHFNLVKFIKFNSKVVELRFIGDGKTLQMGDLG 126
Query: 118 --GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEG 175
GNLLP G PVWEVAV T + + IQ + FE++VVC GKYGDVP P FP KGPE+F+G
Sbjct: 127 AYGNLLP-GKPVWEVAVNTGDGD-IQWHAFEYVVVCAGKYGDVPRTPTFPVKKGPEIFKG 184
Query: 176 QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235
+VLHS+DY KL KE ASQLL KKVAV+GFKKSAIDLA E A +NQG EG+ CTM+VRT
Sbjct: 185 KVLHSMDYSKLQKEKASQLLHGKKVAVIGFKKSAIDLALESALANQGKEGKTCTMVVRTP 244
Query: 236 HWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLW 295
HW +PHY W R VSKFIESY+LW
Sbjct: 245 HWVIPHY--W------------------------------------RATVSKFIESYVLW 266
Query: 296 KLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDN 355
KLPL KYGLKPDH FEEDYASCQMA++PE FF EA+KG I FKR + WWF+ G+EFED
Sbjct: 267 KLPLEKYGLKPDHAFEEDYASCQMALVPEKFFEEADKGMIRFKRTTNWWFYDEGIEFEDG 326
Query: 356 TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIE 415
T LEADVVIL TGYDG KKLKA +PEPF+S LE P G++PLYRGTIHPLIPNM F+GY++
Sbjct: 327 TTLEADVVILATGYDGMKKLKAIVPEPFRSWLEFPWGIMPLYRGTIHPLIPNMGFIGYVQ 386
Query: 416 SVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSIN 475
S SNL ++EL S WLS+L+D KF LPS EKML+Q KEM VM++S+RF+K HC STFSI
Sbjct: 387 SSSNLKSSELHSRWLSQLLDGKFTLPSKEKMLDQFLKEMHVMRRSSRFFKNHCFSTFSIQ 446
Query: 476 HSDEICEEM 484
H+D++ ++M
Sbjct: 447 HADDLSKDM 455
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|Q8SPQ7|FMO3_MACMU Dimethylaniline monooxygenase [N-oxide-forming] 3 OS=Macaca mulatta GN=FMO3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 137/500 (27%), Positives = 229/500 (45%), Gaps = 81/500 (16%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
K+AIIGAGVSGLA+++ P FE S+ IGG+WK + Y S S
Sbjct: 4 KVAIIGAGVSGLASIRSCLEEGLEPTCFEKSNDIGGLWKFSDHAEEGRASIYKSVFTNSS 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F DFP+P+ D P F ++I +YL ++AK + K ++F + V V TT
Sbjct: 64 KEMMCFPDFPYPD-DFPNFMHNSKIQEYLTAFAKEKSLLKYIQFKTFVSSVNKRPDFATT 122
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEV-- 172
W+V T + F+ ++VC+G + + P P P +
Sbjct: 123 GQ-----------WDVT--TERDGKRESAVFDAVMVCSGHH----VYPNLPKESFPGLNH 165
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232
F+G+ HS DY KE + K K+V VVG S D+A E + + + +
Sbjct: 166 FKGKCFHSRDY----KEPG--VFKGKRVLVVGLGNSGCDIATELSHT-----AEQVVISS 214
Query: 233 RTTHWTVPHYRIW--GLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFI- 289
R+ W + R+W G P+ M TRF FL + ++ L +++ ++F
Sbjct: 215 RSGSWVMS--RVWDNGYPWDMVLITRFGTFLKNNLPTAISDWLY------MKQMNARFKH 266
Query: 290 ESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGG 349
E+Y L +PL L+ + F ++ +C + IV + + F +
Sbjct: 267 ENYGL--MPLNGV-LRKEPVFNDELPACILC-------------GIVSVKPNVKKFTETS 310
Query: 350 LEFEDNTKLEA-DVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLI--P 406
FED T E D VI TGY FL E S++++ + + L++G PL+
Sbjct: 311 AIFEDGTTFEGIDCVIFATGYS---YTYTFLDE---SIIKNRNNEIILFKGVFPPLLEKS 364
Query: 407 NMAFVGYIESV-SNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYK 465
+A +G+++S+ + + T +L+S W +R+I LPS E M+ +++ME ++ + K
Sbjct: 365 TIAVIGFVQSLGAAIPTVDLQSRWAARVIKGTCTLPSMEDMMNDINEKME--RKHKWYGK 422
Query: 466 RHCISTFSINHSDEICEEMG 485
+ T I + DE+ +G
Sbjct: 423 SETLQTDYIVYMDELSSFIG 442
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Involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. It N-oxygenates primary aliphatic alkylamines as well as secondary and tertiary amines. Acts on TMA to produce TMA-N-oxide. Macaca mulatta (taxid: 9544) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 4 EC: 8 |
| >sp|Q04799|FMO5_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Oryctolagus cuniculus GN=FMO5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/497 (25%), Positives = 212/497 (42%), Gaps = 74/497 (14%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
++A+IGAG SGLA +K PV FE +D IGG+W+ + Y S + +
Sbjct: 5 RVAVIGAGASGLACIKCCLEEGLEPVCFERTDDIGGLWRFQESPDEGRASIYKSVIINTS 64
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F+D+P P+ P F +++L+Y YAK F + K ++F + V V+ T+
Sbjct: 65 KEMMCFSDYPIPDHF-PNFMHNSQVLEYFRMYAKEFGLLKYIQFKTTVCSVKKRPDFSTS 123
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI-IPAFPNNKGPEVF 173
WEV + + F+ ++VCTG + + + +FP G E F
Sbjct: 124 GQ-----------WEVLTECEGKK--ESAVFDGVLVCTGHHTSAHLPLESFP---GIEKF 167
Query: 174 EGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233
+GQ LHS DY +K K+V V+G S DLA E + + + + R
Sbjct: 168 KGQYLHSRDYKNPEK------FTGKRVIVIGIGNSGGDLAVEISHT-----AKQVFLSTR 216
Query: 234 TTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYL 293
W + G P + S+RFSQFL +++ + F+E +
Sbjct: 217 RGAWIMNRVGDHGYPIDILLSSRFSQFLKKITGETI---------------ANSFLERKM 261
Query: 294 LWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFE 353
+ +GLKP H A Q + + + G + K K F + FE
Sbjct: 262 NQRFDHAMFGLKPKH-----RALSQHPTVNDDLPNRIISGSVKIKGNVK-EFTETAAIFE 315
Query: 354 DNTKL-EADVVILCTGYDGKKKLKAFLPEPF-QSLLEHPSGLLPLYRGTIHPLI--PNMA 409
D ++ + D VI TGY PF + ++ + LY+ P + P +A
Sbjct: 316 DGSREDDIDAVIFATGYS--------FSFPFLEDSVKVVKNKVSLYKKVFPPNLEKPTLA 367
Query: 410 FVGYIESVSNLH-TAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHC 468
+G I+ + + +EL++ W + + LPS +M+ + S+ E M + +RH
Sbjct: 368 IIGLIQPLGAIMPISELQARWATLVFKGLKTLPSQSEMMTEISQVQEKMAKRYVESQRHT 427
Query: 469 ISTFSINHSDEICEEMG 485
I I +EI + +G
Sbjct: 428 IQGDYIETMEEIADLVG 444
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In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P97501|FMO3_MOUSE Dimethylaniline monooxygenase [N-oxide-forming] 3 OS=Mus musculus GN=Fmo3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 136/505 (26%), Positives = 220/505 (43%), Gaps = 91/505 (18%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
K+AIIGAGVSGLAA++ P FE SD +GG+WK + Y S S
Sbjct: 4 KVAIIGAGVSGLAAIRSCLEEGLEPTCFERSDDVGGLWKFSDHIEEGRASIYQSVFTNSS 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F DFP+P+ D P F ++++ +Y+ S+AK ++ K ++F + V + + TT
Sbjct: 64 KEMMCFPDFPYPD-DFPNFMHHSKLQEYITSFAKEKNLLKYIQFETPVTSINKCPNFSTT 122
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEV-- 172
WEV + H + F+ ++C+G + I P P + P +
Sbjct: 123 GK-----------WEVTTEKHGKK--ETAVFDATMICSGHH----IFPHVPKDSFPGLNR 165
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232
F+G+ HS DY KE + K K+V V+G S D+A E + Q T+
Sbjct: 166 FKGKCFHSRDY----KEPG--IWKGKRVLVIGLGNSGCDIAAELSHV-----AQKVTISS 214
Query: 233 RTTHWTVPHYRIW--GLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIE 290
R+ W + R+W G P+ M TRF FL + L T + + E
Sbjct: 215 RSGSWVMS--RVWDDGYPWDMVVLTRFQTFLKNN-----LPTAISDWWYTRQMNARFKHE 267
Query: 291 SYLLWKLPLLKYGLKPDHPFEEDYAS---CQMAIMPEGFFSEAEKGKIVFKRASKWWFWK 347
+Y L +PL + L+ + F ++ + C M + E +
Sbjct: 268 NYGL--VPLNR-TLRKEPVFNDELPARILCGMVTIKPNVKEFTETSAV------------ 312
Query: 348 GGLEFEDNTKLEA-DVVILCTGYDGKKKLKAFLPEPF--QSLLEHPSGLLPLYRGTIHPL 404
FED T EA D VI TGY PF S+++ + + LY+G P
Sbjct: 313 ----FEDGTMFEAIDCVIFATGYG--------YAYPFLDDSIIKSRNNEVTLYKGVFPPQ 360
Query: 405 I--PNMAFVGYIESV-SNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQST 461
+ P MA +G ++S+ + + +L++ W +++I LPS M++ E M +
Sbjct: 361 LEKPTMAVIGLVQSLGATIPITDLQARWAAQVIKGTCTLPSVNDMMDDID---EKMGEKF 417
Query: 462 RFY-KRHCISTFSINHSDEICEEMG 485
++Y I T I + DE+ +G
Sbjct: 418 KWYGNSTTIQTDYIVYMDELASFIG 442
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Involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. It N-oxygenates primary aliphatic alkylamines as well as secondary and tertiary amines. Acts on TMA to produce TMA-N-oxide. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 4 EC: 8 |
| >sp|Q6IRI9|FMO2_RAT Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Rattus norvegicus GN=Fmo2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 133/505 (26%), Positives = 228/505 (45%), Gaps = 89/505 (17%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
K+A+IGAGVSGL ++K P FE ++ IGG+W+ + Y+S +
Sbjct: 4 KVAVIGAGVSGLISLKGCVDEGLEPTCFERTEDIGGLWRFKENVEDGRASIYHSVITNTS 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F+DFP P D P F +++L+Y +AK FD+ K ++F + V+ V+ ++
Sbjct: 64 KEMSCFSDFPMPE-DFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVISVKKRPDFASS 122
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP--AFPNNKGPEV 172
W+V VQ++ QR F+ ++VC+G + P +P +FP G E
Sbjct: 123 GQ-----------WDVYVQSNGKE--QRAVFDAVMVCSGHHIQ-PHLPLKSFP---GIER 165
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232
F+GQ HS Y K + K++ VVG SA D+A E ++ + + V
Sbjct: 166 FQGQYFHSRQY----KHPVG--YEGKRILVVGIGNSAADIASELSK-------RAAQVFV 212
Query: 233 RTTH--WTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIE 290
T H W + G P+ M + TRFS L +++++ + + R ++++
Sbjct: 213 STRHGSWVLSRISEDGYPWDMVFHTRFSSMLRNVLPRTVVKWM-------MERQMNRWFN 265
Query: 291 SYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGL 350
+P KY +K P D +P A K K K + + +
Sbjct: 266 HENYGLVPQNKYLMK--EPVLNDD-------LPSRLLYGAIKVKTRVKELT-----ETAV 311
Query: 351 EFEDNTKLE-ADVVILCTGYDGKKKLKAFLPEPF--QSLLEHPSGLLPLYRGTIHPLI-- 405
FED T E DV++ TGY PF SL++ + LY+ P +
Sbjct: 312 VFEDGTVEEDVDVIVFATGYT--------FSFPFLEDSLVKVEDNKVSLYKAMFPPHLEK 363
Query: 406 PNMAFVGYIESVSNLH-TAELRSIWLSRLIDDKFKLPSAEKML----EQTSKEMEVMKQS 460
P +A +G I+ + ++ T EL++ W +R+ +LPS M+ E+ K +++ +S
Sbjct: 364 PTLACIGLIQPLGSIFPTVELQARWATRVFKGVCRLPSETTMMADIAERNEKRIDLFGKS 423
Query: 461 TRFYKRHCISTFSINHSDEICEEMG 485
+ + T I++ DE+ E+G
Sbjct: 424 ----QSQILQTNYIDYLDELALEIG 444
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This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|O60774|FMO6_HUMAN Putative dimethylaniline monooxygenase [N-oxide-forming] 6 OS=Homo sapiens GN=FMO6P PE=5 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 130/504 (25%), Positives = 227/504 (45%), Gaps = 82/504 (16%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
++ IIGAGVSGLAA+ P FE SD +GG+WK + Y S S
Sbjct: 4 RVGIIGAGVSGLAAIWCCLEEGLEPTCFERSDDVGGLWKFSDHTEEGRASIYQSVFTNSS 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F DFP+P+ D P + ++++ +Y+++YA+ D+ + ++F ET
Sbjct: 64 KEMMCFPDFPYPD-DYPNYIHHSKLQEYIKTYAQKKDLLRYIQF-------------ETL 109
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGP--EV 172
SG P+ + V T + F+ +++C+G + + P P + P +
Sbjct: 110 VSGIKKCPSFLVTGQWVVVTEKDGKQESTIFDAVMICSGHH----VYPNLPTDSFPGLDQ 165
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232
F G LHS DY + K K+V V+G S D+A E + +
Sbjct: 166 FRGNYLHSRDY------KNPEAFKGKRVLVIGLGNSGSDIAVELSRL-----ATQVIIST 214
Query: 233 RTTHWTVPHYRIW--GLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIE 290
R+ W + R+W G P+ M Y TRF+ FL +++L + + L + E
Sbjct: 215 RSASWVMS--RVWDDGYPWDMMYVTRFASFL-----RNVLPSFISDWLYVQKMNTWFKHE 267
Query: 291 SYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGL 350
+Y L +PL L+ + F ++ S + G + K + K F +
Sbjct: 268 NYGL--MPL-NGSLRKEPVFNDELPSRILC------------GTLSIKPSVKE-FTETSA 311
Query: 351 EFEDNTKLEA-DVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLI--PN 407
FED T EA D VI TGYD FL E ++++ + + L++G PL+ P
Sbjct: 312 VFEDGTMFEAIDSVIFATGYDYSY---PFLDE---TIMKSRNNEVTLFKGIFPPLMEKPT 365
Query: 408 MAFVGYIESV-SNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEME-----VMKQST 461
+A +G ++S+ + + TA+L++ W +++ + LP+ +M++ T ++M +
Sbjct: 366 LAVIGLVQSLGAAIPTADLQAWWAAKVFANSCTLPTTNEMMDDTDEKMGKKLKCMFSSFF 425
Query: 462 RFYKRHCISTFSINHSDEICEEMG 485
F + + T I + DE+ +G
Sbjct: 426 MFGQSQTLQTDYITYVDELGSFIG 449
|
It is probable that this protein is only produced in very small quantity or not at all as the gene coding for it seems to be unable to produce full length transcripts. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P17635|FMO2_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Oryctolagus cuniculus GN=FMO2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 136/499 (27%), Positives = 222/499 (44%), Gaps = 77/499 (15%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
K+A+IGAGVSGL ++K P FE ++ IGG+W+ + Y S +
Sbjct: 4 KVAVIGAGVSGLISLKCCVDEGLEPTCFERTEDIGGLWRFKENVEDGRASIYQSVITNTS 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F+DFP P D P F +++L+Y +AK FD+ K ++F + V+ V+ ++
Sbjct: 64 KEMSCFSDFPMPE-DFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVISVKKRPDFASS 122
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP--AFPNNKGPEV 172
WEV Q+++ Q F+ ++VC+G + +P IP +FP G E
Sbjct: 123 GQ-----------WEVVTQSNSKQ--QSAVFDAVMVCSGHH-ILPNIPLKSFP---GIEK 165
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232
F+GQ HS Y K A L+ K++ V+G SA D+A E ++ + +
Sbjct: 166 FKGQYFHSRQY----KHPAG--LEGKRILVIGIGNSASDIAVELSK-----KAAQVYIST 214
Query: 233 RTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESY 292
R W + G P+ M + TRFS S+LR +L ++ V +E
Sbjct: 215 RKGSWVMSRISEDGYPWDMVFHTRFS---------SMLRNVLPRMI------VKWMMEQQ 259
Query: 293 LLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEF 352
+ YGL P++ + + ++ + S G I KR K + F
Sbjct: 260 MNRWFNHENYGLAPENKY-----LMKEPVLNDDLPSRILYGTIKVKRRVKELTESAAI-F 313
Query: 353 EDNTKLE-ADVVILCTGYDGKKKLKAFLPEPF--QSLLEHPSGLLPLYRGTIHPLIPNMA 409
ED T E DV++ TGY AF PF +SL++ ++ LY+ P +
Sbjct: 314 EDGTVEEDIDVIVFATGYTF-----AF---PFLEESLVKIEDNMVSLYKYMFPPQLEKST 365
Query: 410 F--VGYIESVSNLH-TAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKR 466
F +G I+ + ++ T EL++ W +R+ LPS E M+ K E
Sbjct: 366 FACLGLIQPLGSIFPTVELQARWATRVFKGLCSLPSKETMMADIIKRNENRIALFGESLS 425
Query: 467 HCISTFSINHSDEICEEMG 485
+ T I++ DE+ E+G
Sbjct: 426 QKLQTNYIDYLDELALEIG 444
|
This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P49326|FMO5_HUMAN Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Homo sapiens GN=FMO5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 124/497 (24%), Positives = 216/497 (43%), Gaps = 74/497 (14%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
+IA+IG GVSGL+++K PV FE +D IGG+W+ + Y S + +
Sbjct: 5 RIAVIGGGVSGLSSIKCCVEEGLEPVCFERTDDIGGLWRFQENPEEGRASIYKSVIINTS 64
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F+D+P P+ P F ++L+Y YAK FD+ K +RF + V V+ T+
Sbjct: 65 KEMMCFSDYPIPDHY-PNFMHNAQVLEYFRMYAKEFDLLKYIRFKTTVCSVKKQPDFATS 123
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI-IPAFPNNKGPEVF 173
WEV ++ + F+ ++VCTG + + + + +FP G E F
Sbjct: 124 GQ-----------WEVVTESEGKKEMNV--FDGVMVCTGHHTNAHLPLESFP---GIEKF 167
Query: 174 EGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233
+GQ HS DY + K+V ++G S DLA E +++ + + R
Sbjct: 168 KGQYFHSRDY------KNPEGFTGKRVIIIGIGNSGGDLAVEISQT-----AKQVFLSTR 216
Query: 234 TTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYL 293
W + +G P + +S+R + F+ QSL +K++E +
Sbjct: 217 RGAWILNRVGDYGYPADVLFSSRLTHFIWKICGQSL---------------ANKYLEKKI 261
Query: 294 LWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFE 353
+ +GLKP H A Q + + + G + K K F + FE
Sbjct: 262 NQRFDHEMFGLKPKH-----RALSQHPTLNDDLPNRIISGLVKVKGNVK-EFTETAAIFE 315
Query: 354 DNTKL-EADVVILCTGYDGKKKLKAFLPEPF-QSLLEHPSGLLPLYRGTIHPLI--PNMA 409
D ++ + D VI TGY PF + ++ + LY+ P + P +A
Sbjct: 316 DGSREDDIDAVIFATGYS--------FDFPFLEDSVKVVKNKISLYKKVFPPNLERPTLA 367
Query: 410 FVGYIESVSNLH-TAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHC 468
+G I+ + + +EL+ W +++ LPS +M+ + SK E + + +RH
Sbjct: 368 IIGLIQPLGAIMPISELQGRWATQVFKGLKTLPSQSEMMAEISKAQEEIDKRYVESQRHT 427
Query: 469 ISTFSINHSDEICEEMG 485
I I+ +E+ + +G
Sbjct: 428 IQGDYIDTMEELADLVG 444
|
In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
| >sp|P49109|FMO5_CAVPO Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Cavia porcellus GN=FMO5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 129/512 (25%), Positives = 214/512 (41%), Gaps = 78/512 (15%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
+IA+IG GVSGL+++K PV FE S IGG+W+ + Y S + +
Sbjct: 5 RIAVIGGGVSGLSSIKCCLEEGLEPVCFERSADIGGLWRFQENPEEGRASIYKSVIINTS 64
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F+D+P P+ P F + +L+Y YAK F + K ++F + V V+ T+
Sbjct: 65 KEMMCFSDYPIPDHY-PNFMHNSHVLEYFRMYAKEFGLLKYIQFKTTVCNVKKRPDFSTS 123
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI-IPAFPNNKGPEVF 173
WEV + + F+ ++VCTG + + + + +FP G E F
Sbjct: 124 GQ-----------WEVVTEHEGKTKVDV--FDAVMVCTGHHTNAHLPLESFP---GIEKF 167
Query: 174 EGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233
+GQ HS DY + K+V ++G S DLA E + + + + R
Sbjct: 168 KGQYFHSRDY------KNPEAFTGKRVVIIGIGNSGGDLAVEISHT-----AKQVFLSTR 216
Query: 234 TTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYL 293
W + G P + S+RF+ FL QSL + ++E +
Sbjct: 217 RGSWILNRVGKHGYPTDVLLSSRFTYFLSKILGQSL---------------SNAYVEKQM 261
Query: 294 LWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFE 353
+ +GLKP H A Q + + + G + K K F + FE
Sbjct: 262 NERFDHEMFGLKPKH-----RAMSQHPTVNDDLPNRIIAGMVKVKGNVK-EFTETAAIFE 315
Query: 354 DNTKL-EADVVILCTGYDGKKKLKAFLPEPF-QSLLEHPSGLLPLYRGTIHPLI--PNMA 409
D ++ + D VI TGY PF + ++ + LY+ P + P +A
Sbjct: 316 DGSREDDIDAVIFATGYS--------FDFPFLEDSVKVVKNKVSLYKKVFPPNLERPTLA 367
Query: 410 FVGYIESVSNLH-TAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHC 468
+G I+ + + +EL+ W ++ LPS +M+ + +K E + + +RH
Sbjct: 368 IIGLIQPLGAIMPISELQGRWAVQVFKGLKTLPSQSEMMAEITKAQEEIAKRYVDSQRHT 427
Query: 469 ISTFSINHSDEICEEMGWNAWRKRNWLLEAFS 500
I I +EI E +G K N L AF+
Sbjct: 428 IQGDYIQTMEEIAEFVGV----KPNLLSLAFT 455
|
In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme. Cavia porcellus (taxid: 10141) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 511 | ||||||
| 356545788 | 517 | PREDICTED: probable flavin-containing mo | 0.986 | 0.974 | 0.760 | 0.0 | |
| 224068536 | 520 | predicted protein [Populus trichocarpa] | 0.984 | 0.967 | 0.780 | 0.0 | |
| 356564718 | 517 | PREDICTED: probable flavin-containing mo | 0.986 | 0.974 | 0.754 | 0.0 | |
| 225444635 | 522 | PREDICTED: probable flavin-containing mo | 0.960 | 0.940 | 0.727 | 0.0 | |
| 255550349 | 521 | dimethylaniline monooxygenase, putative | 0.982 | 0.963 | 0.754 | 0.0 | |
| 297850310 | 530 | flavin-dependent monooxygenase 1 [Arabid | 0.988 | 0.952 | 0.714 | 0.0 | |
| 145335895 | 530 | putative flavin-containing monooxygenase | 0.982 | 0.947 | 0.721 | 0.0 | |
| 356558445 | 527 | PREDICTED: probable flavin-containing mo | 0.984 | 0.954 | 0.727 | 0.0 | |
| 359475991 | 523 | PREDICTED: probable flavin-containing mo | 0.954 | 0.933 | 0.695 | 0.0 | |
| 449452773 | 517 | PREDICTED: probable flavin-containing mo | 0.980 | 0.969 | 0.685 | 0.0 |
| >gi|356545788|ref|XP_003541317.1| PREDICTED: probable flavin-containing monooxygenase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/506 (76%), Positives = 447/506 (88%), Gaps = 2/506 (0%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
SKI I+GAGVSG+AA KQL HHNP+VFEASDSIGG+W CSYNSTKLQSHR DYEFTDFP
Sbjct: 13 SKIGILGAGVSGIAAAKQLSHHNPIVFEASDSIGGVWSHCSYNSTKLQSHRRDYEFTDFP 72
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124
WP RD+P FP++ EIL+YL SYAKHFDV K +RFNSKVVE+R+TG+ E T SG +LLP G
Sbjct: 73 WPQRDNPDFPTHLEILNYLHSYAKHFDVLKNIRFNSKVVEIRYTGNREVTCSG-SLLP-G 130
Query: 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYC 184
PVWEVAVQT++S++IQ YGFE +VVC GKYGD+ IP FP KG EVF+G+V+H++DYC
Sbjct: 131 LPVWEVAVQTNHSDTIQWYGFELVVVCVGKYGDIARIPTFPQKKGAEVFKGKVMHTLDYC 190
Query: 185 KLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRI 244
KLD+EAA+QLLK KKV VVGFKKS +DLA ECA++NQGPEGQPCTM+VRT HWTVPHY I
Sbjct: 191 KLDQEAATQLLKGKKVVVVGFKKSGLDLAMECAQANQGPEGQPCTMVVRTLHWTVPHYWI 250
Query: 245 WGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304
WGLPFF+F+STR SQF+H PNQ LLRTLLCL+ SPLRRG+SKFIESYLLWKLPL KYGL
Sbjct: 251 WGLPFFLFFSTRSSQFIHERPNQGLLRTLLCLMCSPLRRGISKFIESYLLWKLPLEKYGL 310
Query: 305 KPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVI 364
KP+HPF EDYASCQMAIMPE FFSEAEKG+IVFK+ASKWWFW GG+EFEDNTKL ADVV+
Sbjct: 311 KPEHPFVEDYASCQMAIMPENFFSEAEKGQIVFKKASKWWFWNGGIEFEDNTKLNADVVV 370
Query: 365 LCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAE 424
L TG+DGKKKLK LPEPF SLLE+PSG++PLYRGTIHPLIPNMAFVG++ESVSNLH++E
Sbjct: 371 LATGFDGKKKLKTILPEPFSSLLEYPSGIMPLYRGTIHPLIPNMAFVGFVESVSNLHSSE 430
Query: 425 LRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSDEICEEM 484
LRS+WLS L+DDKFKLPS E ML QT KE+EVMK+STRFYKRHCIST+SINHSDEIC+++
Sbjct: 431 LRSMWLSGLVDDKFKLPSVESMLSQTHKEIEVMKRSTRFYKRHCISTYSINHSDEICKDL 490
Query: 485 GWNAWRKRNWLLEAFSPYGSKDYEDE 510
GW++WRK+NW+ E F PY ++Y E
Sbjct: 491 GWSSWRKKNWISEVFGPYSIEEYAKE 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068536|ref|XP_002326141.1| predicted protein [Populus trichocarpa] gi|222833334|gb|EEE71811.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/510 (78%), Positives = 449/510 (88%), Gaps = 7/510 (1%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
SKI IIGAGVSG+A KQL ++NPVVFEASDSIGG+WKSCSY+STKLQS R DYEFTDFP
Sbjct: 10 SKIGIIGAGVSGIAVAKQLSNYNPVVFEASDSIGGVWKSCSYSSTKLQSPRGDYEFTDFP 69
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG-----GN 119
WPNRDDP FPSY EILDYL+SYA+HFDV K V FN+KVVEVRF G E DSG G+
Sbjct: 70 WPNRDDPSFPSYIEILDYLKSYAEHFDVMKYVMFNTKVVEVRFVGGREPADSGEPGEYGS 129
Query: 120 LLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLH 179
LLP G PVWEVAVQ+ S++IQ Y FEFLVVCTGKYGD+P IP FP KGPEVF+G+V+H
Sbjct: 130 LLP-GLPVWEVAVQSKQSDTIQWYAFEFLVVCTGKYGDIPKIPEFPLKKGPEVFKGKVMH 188
Query: 180 SIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239
S+DYCKLDKEAA+QL K KKVAVVGFKKSAIDLA ECAE+NQGPEGQPCTM+VRT HWTV
Sbjct: 189 SLDYCKLDKEAATQLHKGKKVAVVGFKKSAIDLALECAEANQGPEGQPCTMVVRTLHWTV 248
Query: 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPL 299
PHY +WGLPFF+F+STR SQF+H PNQSLLRT+LCLLLSP+R VSKFIESYLL KLPL
Sbjct: 249 PHYWVWGLPFFLFFSTRSSQFIHERPNQSLLRTMLCLLLSPMRHVVSKFIESYLLHKLPL 308
Query: 300 LKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLE 359
KYGLKPDHPF EDYASCQMAIMPE FFSEA+KGKIVFK+ASKWWF K GLEFEDNTK+E
Sbjct: 309 QKYGLKPDHPFIEDYASCQMAIMPENFFSEADKGKIVFKKASKWWFNKEGLEFEDNTKVE 368
Query: 360 ADVVILCTGYDGKKKLKAFLPEPFQSLLEHP-SGLLPLYRGTIHPLIPNMAFVGYIESVS 418
ADVVI TG+DGK+KLK LP+PF SLLE SG++PLYRGT+HPLIPNMAF+G+IESV+
Sbjct: 369 ADVVIFATGFDGKRKLKDILPDPFCSLLEDARSGVMPLYRGTVHPLIPNMAFLGFIESVA 428
Query: 419 NLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSD 478
NLHT+ELRSIWL+RLID+KFKLP+ +KML+Q SKE+E+ K++TRFYKRHCISTFSINHSD
Sbjct: 429 NLHTSELRSIWLARLIDNKFKLPTIDKMLDQVSKEIEIAKRTTRFYKRHCISTFSINHSD 488
Query: 479 EICEEMGWNAWRKRNWLLEAFSPYGSKDYE 508
EICEEMGW++WRK N L EAFSPYGS+DYE
Sbjct: 489 EICEEMGWSSWRKNNMLSEAFSPYGSRDYE 518
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564718|ref|XP_003550596.1| PREDICTED: probable flavin-containing monooxygenase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/506 (75%), Positives = 444/506 (87%), Gaps = 2/506 (0%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
SKI IIGAGVSG+AA KQL HHNP+VFEASDSIGG+W CSYNSTKLQSHR DYEFTDFP
Sbjct: 13 SKIGIIGAGVSGIAAAKQLSHHNPIVFEASDSIGGVWSHCSYNSTKLQSHRRDYEFTDFP 72
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124
WP RD+P FP+Y EIL+YL SYA+HFDV K +RFNSKVVE+R+TG+ E T G+LLP G
Sbjct: 73 WPQRDNPDFPTYLEILNYLHSYAEHFDVLKNIRFNSKVVEIRYTGNREVT-GFGSLLP-G 130
Query: 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYC 184
P+WEVAVQT++ ++IQ YGFE +VVC GKYGD+ IP FP KG EVF+G+V+H++DYC
Sbjct: 131 LPMWEVAVQTNHLDTIQWYGFELVVVCVGKYGDIARIPTFPQKKGAEVFKGKVMHTLDYC 190
Query: 185 KLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRI 244
KLD+EAA+QLLK KKV VVGFKKS +DLA ECAE+NQGPEGQPCTM+VRT HWTVPHY I
Sbjct: 191 KLDQEAATQLLKGKKVVVVGFKKSGLDLAMECAEANQGPEGQPCTMVVRTLHWTVPHYWI 250
Query: 245 WGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304
WGLPFF+F+STR SQF+H PNQ LLRTLLCL+ SPLRRG+SKFIESYLLWKLPL KYGL
Sbjct: 251 WGLPFFLFFSTRSSQFIHERPNQGLLRTLLCLMCSPLRRGISKFIESYLLWKLPLDKYGL 310
Query: 305 KPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVI 364
KP+HPF EDYASCQMAIMPE FFSEAEKGKIVFK+ASKWWFW GG+E EDNTKL ADVV+
Sbjct: 311 KPEHPFVEDYASCQMAIMPENFFSEAEKGKIVFKKASKWWFWNGGIELEDNTKLNADVVV 370
Query: 365 LCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAE 424
L TG+DGKKKLK LPEPF SLLE+PSG++PLYRGTIHPLIPNMAFVG++ESVSNLH++E
Sbjct: 371 LATGFDGKKKLKTILPEPFCSLLEYPSGIMPLYRGTIHPLIPNMAFVGFVESVSNLHSSE 430
Query: 425 LRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSDEICEEM 484
LRS+WLS L+D+KFKLPS E ML QT KE+EVMK+STRFYKRHCIST+SINHSDEIC+++
Sbjct: 431 LRSMWLSGLVDEKFKLPSIETMLSQTLKEIEVMKRSTRFYKRHCISTYSINHSDEICKDL 490
Query: 485 GWNAWRKRNWLLEAFSPYGSKDYEDE 510
GW++WRK++W+ E F PY ++Y E
Sbjct: 491 GWSSWRKKDWISEVFGPYNIEEYAKE 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444635|ref|XP_002277560.1| PREDICTED: probable flavin-containing monooxygenase 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/496 (72%), Positives = 425/496 (85%), Gaps = 5/496 (1%)
Query: 21 KQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80
KQL +NPVVFEA+DSIGG+WK CSYNSTKLQS R DYEF+D+PWP RD+ FPS+T+IL
Sbjct: 27 KQLSSYNPVVFEATDSIGGVWKHCSYNSTKLQSLRCDYEFSDYPWPERDNSSFPSHTQIL 86
Query: 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGN-----LLPAGHPVWEVAVQTH 135
DYL SYA +FD+ K VRFNSKVVE+RF G + TD+ G L AG PVWEVAVQT+
Sbjct: 87 DYLHSYATYFDLLKFVRFNSKVVELRFVGDRDATDADGRPGEYGSLLAGRPVWEVAVQTN 146
Query: 136 NSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLL 195
S +Q Y FEF+VVC GKYGD+P +PAFP NKGPE+F+GQVLHS+DY KLD+E + LL
Sbjct: 147 QSQDVQWYSFEFVVVCIGKYGDIPKMPAFPRNKGPEIFQGQVLHSLDYSKLDQEGVTNLL 206
Query: 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYST 255
K K+VAVVG+KKSAID+A ECAE+NQGPEGQPCTM++RT HWTVPHY +WGLPF FYST
Sbjct: 207 KGKRVAVVGYKKSAIDVAAECAEANQGPEGQPCTMVIRTLHWTVPHYWVWGLPFSWFYST 266
Query: 256 RFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYA 315
RFSQF H P+Q +LR+L C LLSP+R+ VSKFIESYL WKLPL KYGLKPDHPFEEDYA
Sbjct: 267 RFSQFFHERPDQGMLRSLFCHLLSPMRQAVSKFIESYLAWKLPLRKYGLKPDHPFEEDYA 326
Query: 316 SCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKL 375
SCQMAI+P+ FFSEA+KG I+FKRASKWWFW GG++FED+TKLEADVV+L TG+DGKKKL
Sbjct: 327 SCQMAILPDNFFSEADKGNIMFKRASKWWFWNGGIQFEDDTKLEADVVVLATGFDGKKKL 386
Query: 376 KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLID 435
K LPEPF+S++E PSG++PLYR TIHPLIPNMAFVGY+ESV+NLHTAELRS WL+RL+D
Sbjct: 387 KDILPEPFRSVIESPSGVMPLYRSTIHPLIPNMAFVGYVESVANLHTAELRSKWLARLVD 446
Query: 436 DKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSDEICEEMGWNAWRKRNWL 495
D FKLPS EKM+E+T+ E EVMK++TRFYKR CIST+SINHSDEICEEMGW +WRK++WL
Sbjct: 447 DHFKLPSVEKMIEKTNNETEVMKKTTRFYKRGCISTYSINHSDEICEEMGWTSWRKKSWL 506
Query: 496 LEAFSPYGSKDYEDEK 511
EAFSPY S+DY +EK
Sbjct: 507 SEAFSPYNSEDYGEEK 522
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550349|ref|XP_002516225.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223544711|gb|EEF46227.1| dimethylaniline monooxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/510 (75%), Positives = 453/510 (88%), Gaps = 8/510 (1%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
S+I IIGAGVSGLA +KQL HHNP+VFE+S+S+GG+WKSCSY+STKLQS R+DYEF+DFP
Sbjct: 10 SRIGIIGAGVSGLAVLKQLSHHNPLVFESSNSLGGVWKSCSYHSTKLQSCRADYEFSDFP 69
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGG------ 118
WPNRDDP FPS+ EILDYL SYA+ FD+FK +RFNSKVVEVRF G E D G
Sbjct: 70 WPNRDDPSFPSHLEILDYLTSYAQCFDLFKHIRFNSKVVEVRFVGDREPADCNGTYGEYG 129
Query: 119 NLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVL 178
+LLP GHPVWEVAVQT++S+++Q YGFEFL++C GKYGD+P IP FP+NKGPE+F+G+V+
Sbjct: 130 SLLP-GHPVWEVAVQTNDSDTVQWYGFEFLIICIGKYGDIPKIPEFPHNKGPEIFKGKVM 188
Query: 179 HSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238
H +DYCKL+KEAAS+LLK KKV VVGFKKSAIDLA ECAE+NQGP+ QPCTM+VRT HWT
Sbjct: 189 HPLDYCKLEKEAASELLKGKKVVVVGFKKSAIDLALECAEANQGPDWQPCTMVVRTLHWT 248
Query: 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLP 298
VPHY +WGLPFF+F+STR SQF+H PNQSLL+ LLCLLLSP+R VSKFIESYLL+KLP
Sbjct: 249 VPHYWVWGLPFFLFFSTRSSQFIHERPNQSLLKALLCLLLSPMRHLVSKFIESYLLYKLP 308
Query: 299 LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKL 358
L KYGLKPDHPF EDYASCQMA+MPE FFSEA+KGKI+FKRA KWWF K GLEFEDNT+L
Sbjct: 309 LQKYGLKPDHPFVEDYASCQMALMPENFFSEADKGKILFKRAFKWWFTKEGLEFEDNTRL 368
Query: 359 EADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVS 418
EADVV+L TGYDG KKLK +PEPF SLLE+P+G++PLYRGTIHPLIPNMA +GYIESVS
Sbjct: 369 EADVVMLATGYDGMKKLKKIMPEPFCSLLEYPAGVMPLYRGTIHPLIPNMALLGYIESVS 428
Query: 419 NLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFY-KRHCISTFSINHS 477
NLHTAELRS+WL+RL+D++FKLP+ EKMLEQ SKE+E MK++TRFY K+HCISTFSINHS
Sbjct: 429 NLHTAELRSMWLARLLDNRFKLPTVEKMLEQVSKEIEAMKRTTRFYKKKHCISTFSINHS 488
Query: 478 DEICEEMGWNAWRKRNWLLEAFSPYGSKDY 507
DEICEEMGW++WRK+N+L EAFSPYG++DY
Sbjct: 489 DEICEEMGWSSWRKKNFLAEAFSPYGTQDY 518
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850310|ref|XP_002893036.1| flavin-dependent monooxygenase 1 [Arabidopsis lyrata subsp. lyrata] gi|297338878|gb|EFH69295.1| flavin-dependent monooxygenase 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/519 (71%), Positives = 430/519 (82%), Gaps = 14/519 (2%)
Query: 1 MANY------SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSH 54
MA+Y S++AIIGAGVSGLAA K L HHNP VFEASDS+GG+W+SC+Y +TKLQS
Sbjct: 1 MASYYDKLTSSRVAIIGAGVSGLAAAKNLAHHNPTVFEASDSVGGVWRSCTYETTKLQSA 60
Query: 55 RSDYEFTDFPWPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLET 113
R DYEF+DFPWPN RDD FPSY EILDYLESYAKHFD+ K ++F SKV+EVRF G +T
Sbjct: 61 RVDYEFSDFPWPNNRDDTTFPSYVEILDYLESYAKHFDLLKFMKFGSKVIEVRFIGDGQT 120
Query: 114 ---TDSG--GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNK 168
D G GNLLP G PVWEVAVQT +S IQ + FEF+VVCTGKYGDVP IPAFP K
Sbjct: 121 PQMVDLGAYGNLLP-GKPVWEVAVQTGDSGDIQWHAFEFVVVCTGKYGDVPRIPAFPAKK 179
Query: 169 GPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPC 228
GPE+F+G+V+HS+DYCKL+KE AS LL+ KKVAV+GFKKSAIDLA E A +NQG G+ C
Sbjct: 180 GPEIFQGKVMHSMDYCKLEKEEASSLLRGKKVAVIGFKKSAIDLALESALANQGG-GKAC 238
Query: 229 TMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKF 288
TM+VRTTHW PHY +WGLPFF+FYSTR SQFLH PNQS LRTL CL+ S LR VSKF
Sbjct: 239 TMVVRTTHWVFPHYWVWGLPFFLFYSTRASQFLHDRPNQSFLRTLFCLIFSLLRAAVSKF 298
Query: 289 IESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKG 348
IESY+LWKLPL KYGLKPDH FEEDYASCQMAI+PE FF EA+KG I FK++SKWWF+
Sbjct: 299 IESYVLWKLPLEKYGLKPDHSFEEDYASCQMAIIPEKFFEEADKGMIRFKKSSKWWFYDE 358
Query: 349 GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNM 408
G+EFED T LEADVVIL TGYDGKKKLKA +PEPF++ LE P G++PLYRGTIHPLIPNM
Sbjct: 359 GIEFEDGTTLEADVVILATGYDGKKKLKAIVPEPFRTWLEFPCGVMPLYRGTIHPLIPNM 418
Query: 409 AFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHC 468
FVGY++S SNLHT+ELR++WLSRL+D+KF+LPS EKML+Q KEMEV + S+RFYKRHC
Sbjct: 419 GFVGYVQSNSNLHTSELRTMWLSRLVDEKFRLPSKEKMLDQFFKEMEVTRNSSRFYKRHC 478
Query: 469 ISTFSINHSDEICEEMGWNAWRKRNWLLEAFSPYGSKDY 507
ISTFSI H+D++C +MG N WRK N LLEAFSPYGS+DY
Sbjct: 479 ISTFSIQHADDMCNDMGLNPWRKSNLLLEAFSPYGSQDY 517
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145335895|ref|NP_173359.3| putative flavin-containing monooxygenase 1 [Arabidopsis thaliana] gi|75174733|sp|Q9LMA1.1|FMO1_ARATH RecName: Full=Probable flavin-containing monooxygenase 1 gi|8954062|gb|AAF82235.1|AC069143_11 Contains similarity to a dimethylaniline monooxygenase (N-oxide forming) 2 (pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) (FMO 1B1) from Oryctolagus cuniculus gi|120434 and contains a flavin-binding monooxygenase-like PF|00743 domain [Arabidopsis thaliana] gi|332191702|gb|AEE29823.1| putative flavin-containing monooxygenase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/509 (72%), Positives = 426/509 (83%), Gaps = 7/509 (1%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
S++AIIGAGVSGLAA K L HHNP VFEASDS+GG+W+SC+Y +TKLQS R DYEF+DFP
Sbjct: 11 SRVAIIGAGVSGLAAAKNLVHHNPTVFEASDSVGGVWRSCTYETTKLQSARVDYEFSDFP 70
Query: 65 WPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLET---TDSG--G 118
WPN RDD FP Y EILDYLESYAKHFD+ K ++F SKV+EVRF G ET D G G
Sbjct: 71 WPNNRDDTTFPPYLEILDYLESYAKHFDLLKFMKFGSKVIEVRFIGDGETPQMVDLGAYG 130
Query: 119 NLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVL 178
NLLP G PVWEVAVQ +S IQ + FEF+VVCTGKYGDVP IPAFP KGPE+F+G+V+
Sbjct: 131 NLLP-GKPVWEVAVQIGDSGDIQWHAFEFVVVCTGKYGDVPRIPAFPAKKGPEMFQGKVM 189
Query: 179 HSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238
HS+DYCKL+KE AS LL KKVAV+GFKKSAIDLA E A +NQG G+ CTM+VRTTHW
Sbjct: 190 HSMDYCKLEKEEASTLLSGKKVAVIGFKKSAIDLALESALANQGEGGKACTMVVRTTHWG 249
Query: 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLP 298
+PHY +WGLPFF+FYS+R SQFLH PNQS LRTL CLL S LR VSKFIESY+LWKLP
Sbjct: 250 IPHYWVWGLPFFLFYSSRASQFLHDRPNQSFLRTLFCLLFSLLRAVVSKFIESYVLWKLP 309
Query: 299 LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKL 358
L KYGLKP+H FEEDYASCQMAI+PE FF EA+KG I FK++SKWWF++ G+ FED T L
Sbjct: 310 LEKYGLKPNHSFEEDYASCQMAIIPENFFEEADKGMIRFKKSSKWWFYEEGIVFEDGTTL 369
Query: 359 EADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVS 418
EADVVIL TGYDGKKKLKA +PEPF++ LE PSG++PLYRGTIHPLIPNM FVGY++S S
Sbjct: 370 EADVVILATGYDGKKKLKAIVPEPFRTWLEFPSGVMPLYRGTIHPLIPNMGFVGYVQSSS 429
Query: 419 NLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSD 478
NLHT+ELRS+WLSRL+D+KF+LPS EKML+Q KEMEV + S+RFYKRHCISTFSI H+D
Sbjct: 430 NLHTSELRSMWLSRLVDEKFRLPSKEKMLDQFLKEMEVTRNSSRFYKRHCISTFSIQHAD 489
Query: 479 EICEEMGWNAWRKRNWLLEAFSPYGSKDY 507
++C +MG N WRK N+LLEAFSPYGS+DY
Sbjct: 490 DMCNDMGLNPWRKSNFLLEAFSPYGSQDY 518
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558445|ref|XP_003547517.1| PREDICTED: probable flavin-containing monooxygenase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/511 (72%), Positives = 434/511 (84%), Gaps = 8/511 (1%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
SKIAIIGAGVSG+AA KQL HHNP+VFEASDSIGG+W+ CSYNSTKLQSHR DYEF+DFP
Sbjct: 13 SKIAIIGAGVSGIAASKQLSHHNPLVFEASDSIGGVWRHCSYNSTKLQSHRRDYEFSDFP 72
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPA- 123
WP R+ FP++ EILDYL SYA+HFDV K +RFNSKVVE+R+ G E S LP+
Sbjct: 73 WPQRESSEFPTHLEILDYLHSYAEHFDVLKNIRFNSKVVEIRYVGDQEDLSSSFGGLPSD 132
Query: 124 ------GHPVWEVAVQTHN-SNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQ 176
GHPVWE+ VQ +N S+SIQ Y FEF+VVC GKYGD+P IP F NKGP+VF+G+
Sbjct: 133 HRTPLPGHPVWEIGVQKNNQSDSIQWYAFEFVVVCIGKYGDIPKIPEFACNKGPDVFKGR 192
Query: 177 VLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236
V+H++DYCKLD+EAA++LL+ KKV VVGFKKS IDLA ECA++NQGP+GQ CTM+VRT H
Sbjct: 193 VMHTLDYCKLDQEAATKLLEGKKVVVVGFKKSGIDLAMECAKANQGPQGQSCTMVVRTPH 252
Query: 237 WTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWK 296
W VPHYRIWGLPF MFYSTR SQFLH PNQ +L+ LLCLLLSP+R G+SKFIESYLL K
Sbjct: 253 WIVPHYRIWGLPFSMFYSTRSSQFLHERPNQGVLKALLCLLLSPVRSGISKFIESYLLRK 312
Query: 297 LPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNT 356
LPL KY LKP+HPFEEDYASCQMAI+PE FFSEA+KGKIVFKRAS W FW GG+EFEDN+
Sbjct: 313 LPLEKYELKPEHPFEEDYASCQMAIVPENFFSEADKGKIVFKRASNWSFWSGGIEFEDNS 372
Query: 357 KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES 416
KLEADVV+ TG+DGKKKLK+ LP PF SLL++PSGL+PLYRGTIHPLIPNMAFVGYIES
Sbjct: 373 KLEADVVVFATGFDGKKKLKSILPRPFCSLLDYPSGLMPLYRGTIHPLIPNMAFVGYIES 432
Query: 417 VSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINH 476
VSNL T+E+RS+WLS L+D KF+LPS EKML QT EM+VMK+STRFYKRHC ST SINH
Sbjct: 433 VSNLATSEIRSMWLSGLLDKKFELPSVEKMLSQTLHEMDVMKRSTRFYKRHCNSTHSINH 492
Query: 477 SDEICEEMGWNAWRKRNWLLEAFSPYGSKDY 507
+DE+CE+MGW++WRK+NW+ E FSPY S+DY
Sbjct: 493 NDEMCEDMGWSSWRKKNWITEGFSPYSSEDY 523
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475991|ref|XP_002280392.2| PREDICTED: probable flavin-containing monooxygenase 1-like [Vitis vinifera] gi|296081743|emb|CBI20748.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/496 (69%), Positives = 414/496 (83%), Gaps = 8/496 (1%)
Query: 21 KQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80
KQL H+PVVFEA+DSIGG+WK C+Y STKLQ+ R D+EFTD+PWP RD+ FPS+ EIL
Sbjct: 27 KQLSGHSPVVFEATDSIGGVWKHCTYTSTKLQTPRCDFEFTDYPWPQRDNSSFPSHIEIL 86
Query: 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTG--------SLETTDSGGNLLPAGHPVWEVAV 132
+YL +YA HFDV K V+ NSKVVE+R+ G LET L +G PVWEVAV
Sbjct: 87 EYLHNYASHFDVLKYVKLNSKVVEMRYIGDESESYFDQLETEPREYGRLLSGRPVWEVAV 146
Query: 133 QTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAAS 192
QT+ S ++Q Y FE LV+C GKYGD+P +P+FP NKG E+F+G+VLHS+DY KLD+ AA
Sbjct: 147 QTNQSPTLQWYAFECLVMCLGKYGDIPKMPSFPPNKGREIFQGKVLHSLDYSKLDEAAAH 206
Query: 193 QLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMF 252
+LLK KKV V+G+KKSAIDLA E AE+NQ P+GQPCTM++RT HWTVP Y IWGLPFF+F
Sbjct: 207 RLLKGKKVVVIGYKKSAIDLAMEAAEANQDPDGQPCTMVIRTLHWTVPSYWIWGLPFFLF 266
Query: 253 YSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEE 312
YSTRFSQFLH PNQS LRTLLC LLSP+R+ +SKFIESYL+WKLPL+KYGLKPDHPFEE
Sbjct: 267 YSTRFSQFLHERPNQSFLRTLLCFLLSPMRKAISKFIESYLVWKLPLVKYGLKPDHPFEE 326
Query: 313 DYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGK 372
DYASCQMAI+PE FF+EA+ G+I+FKR+SKWWFW GG+E EDNTKLEADVV L TG+DG
Sbjct: 327 DYASCQMAILPENFFAEADNGRILFKRSSKWWFWSGGIELEDNTKLEADVVALATGFDGN 386
Query: 373 KKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSR 432
KKLKA LP+PF L++H +G LPLYRGTIHPLIPNMAFVGY+ESVSNLHT+ELRS WL++
Sbjct: 387 KKLKALLPQPFCRLIQHSTGNLPLYRGTIHPLIPNMAFVGYVESVSNLHTSELRSKWLAQ 446
Query: 433 LIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSDEICEEMGWNAWRKR 492
L+D++FKLP+ EKMLE+T KEM+VMK+STRFYKR+CISTFSINHSDE+CE+MGW +WRK
Sbjct: 447 LVDEQFKLPTIEKMLEKTKKEMQVMKRSTRFYKRNCISTFSINHSDELCEDMGWKSWRKN 506
Query: 493 NWLLEAFSPYGSKDYE 508
W EAF PY +DY+
Sbjct: 507 TWFSEAFGPYTCQDYQ 522
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452773|ref|XP_004144133.1| PREDICTED: probable flavin-containing monooxygenase 1-like [Cucumis sativus] gi|449493606|ref|XP_004159372.1| PREDICTED: probable flavin-containing monooxygenase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/503 (68%), Positives = 421/503 (83%), Gaps = 2/503 (0%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
SKIAI+GAGVSG+AA KQL HH P+VFEASD IGG+WK CSY+STKLQS RSDYEF DFP
Sbjct: 6 SKIAIVGAGVSGIAAAKQLAHHEPIVFEASDYIGGVWKHCSYDSTKLQSFRSDYEFADFP 65
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124
WPNRD FPS+ EIL+YL SYA+HFD+ + ++FNSKVV VRF G+ + G L +G
Sbjct: 66 WPNRDRVDFPSHLEILEYLNSYARHFDLRRFIQFNSKVVGVRFIGNGNSGKFGP--LLSG 123
Query: 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYC 184
P WE++V S +IQ Y E +V+C GKYGD+P +P FP+ KGPE+F G+V+HS+DYC
Sbjct: 124 RPAWEISVMDTLSETIQLYEVEMVVMCIGKYGDIPKLPEFPSGKGPEIFAGKVMHSLDYC 183
Query: 185 KLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRI 244
KL KE ++LLK K+VA++G+KKSAIDLA ECA++NQG EG+ CTM+VR HWTVPHY +
Sbjct: 184 KLGKEETNELLKGKRVAIIGYKKSAIDLAVECAQANQGEEGKGCTMVVRGLHWTVPHYWV 243
Query: 245 WGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304
WGLPFF F+STR SQFLH PNQ+ L+TL+ L LSP+R GVSKFIESYL WK+PL KYGL
Sbjct: 244 WGLPFFFFFSTRSSQFLHERPNQTFLKTLIGLFLSPMRHGVSKFIESYLTWKMPLEKYGL 303
Query: 305 KPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVI 364
KPDHPF EDYASCQMAIMPE FF +A++GKIV KRASKWWFW GG+EF+D ++ E DVVI
Sbjct: 304 KPDHPFLEDYASCQMAIMPENFFRQADEGKIVIKRASKWWFWNGGIEFDDGSRSEFDVVI 363
Query: 365 LCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAE 424
+ TG+DGKKKL P+PF++ L++PSG++PLYRGTI+P+IPNMAFVGY+ESV+NLHT+E
Sbjct: 364 MATGFDGKKKLTDIFPQPFRTFLQYPSGMIPLYRGTINPMIPNMAFVGYLESVANLHTSE 423
Query: 425 LRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSDEICEEM 484
LRSIWL+RL+D+KFKLP +KM+EQ +KEMEVMK+STRFYKRHCIST+SINHSD+ICEEM
Sbjct: 424 LRSIWLARLVDEKFKLPETQKMVEQINKEMEVMKRSTRFYKRHCISTYSINHSDQICEEM 483
Query: 485 GWNAWRKRNWLLEAFSPYGSKDY 507
GWN WRK +W EAFSPYGS+DY
Sbjct: 484 GWNPWRKNSWFSEAFSPYGSQDY 506
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 511 | ||||||
| TAIR|locus:2202155 | 530 | FMO1 "AT1G19250" [Arabidopsis | 0.990 | 0.954 | 0.670 | 8.8e-189 | |
| UNIPROTKB|Q5LPA2 | 495 | SPO2946 "Monooxygenase domain | 0.679 | 0.701 | 0.251 | 5.8e-40 | |
| TIGR_CMR|SPO_2946 | 495 | SPO_2946 "monooxygenase domain | 0.679 | 0.701 | 0.251 | 5.8e-40 | |
| UNIPROTKB|F1S246 | 538 | LOC100151788 "Dimethylaniline | 0.317 | 0.301 | 0.351 | 1.4e-27 | |
| ZFIN|ZDB-GENE-030131-2644 | 543 | si:dkey-239i20.4 "si:dkey-239i | 0.324 | 0.305 | 0.341 | 2.5e-27 | |
| UNIPROTKB|I3LIW4 | 534 | FMO6P "Dimethylaniline monooxy | 0.459 | 0.440 | 0.267 | 1.3e-26 | |
| UNIPROTKB|P31513 | 532 | FMO3 "Dimethylaniline monooxyg | 0.444 | 0.426 | 0.293 | 1.6e-26 | |
| UNIPROTKB|I3LS94 | 532 | FMO3 "Dimethylaniline monooxyg | 0.444 | 0.426 | 0.275 | 1.8e-26 | |
| UNIPROTKB|E2RFU7 | 540 | LOC478994 "Dimethylaniline mon | 0.320 | 0.303 | 0.335 | 1.9e-26 | |
| RGD|619761 | 531 | Fmo3 "flavin containing monoox | 0.444 | 0.427 | 0.293 | 2.7e-26 |
| TAIR|locus:2202155 FMO1 "AT1G19250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1830 (649.3 bits), Expect = 8.8e-189, P = 8.8e-189
Identities = 346/516 (67%), Positives = 406/516 (78%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
S++AIIGAGVSGLAA K L HHNP VFEASDS+GG+W+SC+Y +TKLQS R DYEF+DFP
Sbjct: 11 SRVAIIGAGVSGLAAAKNLVHHNPTVFEASDSVGGVWRSCTYETTKLQSARVDYEFSDFP 70
Query: 65 WPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLET---TDSG--G 118
WPN RDD FP Y EILDYLESYAKHFD+ K ++F SKV+EVRF G ET D G G
Sbjct: 71 WPNNRDDTTFPPYLEILDYLESYAKHFDLLKFMKFGSKVIEVRFIGDGETPQMVDLGAYG 130
Query: 119 NLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVL 178
NLLP G PVWEVAVQ +S IQ + FEF+VVCTGKYGDVP IPAFP KGPE+F+G+V+
Sbjct: 131 NLLP-GKPVWEVAVQIGDSGDIQWHAFEFVVVCTGKYGDVPRIPAFPAKKGPEMFQGKVM 189
Query: 179 HSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238
HS+DYCKL+KE AS LL KKVAV+GFKKSAIDLA E A +NQG G+ CTM+VRTTHW
Sbjct: 190 HSMDYCKLEKEEASTLLSGKKVAVIGFKKSAIDLALESALANQGEGGKACTMVVRTTHWG 249
Query: 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSXXXXXXXXXXXXXXXGVSKFIESXXXXXXX 298
+PHY +WGLPFF+FYS+R SQFLH PNQS VSKFIES
Sbjct: 250 IPHYWVWGLPFFLFYSSRASQFLHDRPNQSFLRTLFCLLFSLLRAVVSKFIESYVLWKLP 309
Query: 299 XXXXXXXXDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKL 358
+H FEEDYASCQMAI+PE FF EA+KG I FK++SKWWF++ G+ FED T L
Sbjct: 310 LEKYGLKPNHSFEEDYASCQMAIIPENFFEEADKGMIRFKKSSKWWFYEEGIVFEDGTTL 369
Query: 359 EADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVS 418
EADVVIL TGYDGKKKLKA +PEPF++ LE PSG++PLYRGTIHPLIPNM FVGY++S S
Sbjct: 370 EADVVILATGYDGKKKLKAIVPEPFRTWLEFPSGVMPLYRGTIHPLIPNMGFVGYVQSSS 429
Query: 419 NLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSD 478
NLHT+ELRS+WLSRL+D+KF+LPS EKML+Q KEMEV + S+RFYKRHCISTFSI H+D
Sbjct: 430 NLHTSELRSMWLSRLVDEKFRLPSKEKMLDQFLKEMEVTRNSSRFYKRHCISTFSIQHAD 489
Query: 479 EICEEMGWNAWRKRNWLLEAFSPYGSKDY---EDEK 511
++C +MG N WRK N+LLEAFSPYGS+DY ++EK
Sbjct: 490 DMCNDMGLNPWRKSNFLLEAFSPYGSQDYRLGQEEK 525
|
|
| UNIPROTKB|Q5LPA2 SPO2946 "Monooxygenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 95/377 (25%), Positives = 164/377 (43%)
Query: 140 IQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKK 199
+++ F+F+ +CTG++ D I+ P + G+V+HS +Y D E A + K
Sbjct: 127 VRKEDFDFVAICTGQFSDKNIL-THPGQEAFVAGGGEVIHSSEYT--DSEMA----RGKH 179
Query: 200 VAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPF--FMFYSTRF 257
V V+G KSA D+ A S + TM+ R W VP++ + G+ F ++ +
Sbjct: 180 VVVLGGSKSATDIVVNAARSG----AKSVTMVYRENVWRVPYF-VGGINFKRLLYMRAQE 234
Query: 258 SQFLH-G-SPNQSXXXXXXXXXXXXXXXGVSKFIESXXXXXXXXXXXXXXXDHPFEEDYA 315
QF G SP Q G +E+ D P E++ A
Sbjct: 235 QQFNQWGKSPLQRVIAALLKPLVWANFRG----LETLLKAQLGLKKWNMVPDTPIEKE-A 289
Query: 316 SCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKL 375
SC + I+ G F G + + + + G + ++ D+ +L G+ KL
Sbjct: 290 SCSLPIVTPGLFESFRDGTVKPIQGTYDRYEDGHVVLTTGDRVPCDLSVLAVGW----KL 345
Query: 376 KA-FLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLI 434
+L + ++ L G +YR ++P +P+M FVG+ S + +AE+ + WL R
Sbjct: 346 GIPYLAQEYRDKLIEADGQYRVYRLAVNPDLPDMGFVGFNSSFCTILSAEMIANWLVRFA 405
Query: 435 DDKFK-LPSAEKM---LEQTSKEMEVMKQSTRFYKRHCISTFSINHSDEICEEMGWNAWR 490
D + PSA++M +E + + + Y C + F H DE+ +MG +
Sbjct: 406 DGQLAHQPSAQEMNANIEMMLNWRRKERPAAQVYGGLCSAPFHFKHFDELLADMGAGVRK 465
Query: 491 KRNWLLEAFSPYGSKDY 507
+ N L E FS ++ Y
Sbjct: 466 RANPLAEQFSYPDARAY 482
|
|
| TIGR_CMR|SPO_2946 SPO_2946 "monooxygenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 95/377 (25%), Positives = 164/377 (43%)
Query: 140 IQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKK 199
+++ F+F+ +CTG++ D I+ P + G+V+HS +Y D E A + K
Sbjct: 127 VRKEDFDFVAICTGQFSDKNIL-THPGQEAFVAGGGEVIHSSEYT--DSEMA----RGKH 179
Query: 200 VAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPF--FMFYSTRF 257
V V+G KSA D+ A S + TM+ R W VP++ + G+ F ++ +
Sbjct: 180 VVVLGGSKSATDIVVNAARSG----AKSVTMVYRENVWRVPYF-VGGINFKRLLYMRAQE 234
Query: 258 SQFLH-G-SPNQSXXXXXXXXXXXXXXXGVSKFIESXXXXXXXXXXXXXXXDHPFEEDYA 315
QF G SP Q G +E+ D P E++ A
Sbjct: 235 QQFNQWGKSPLQRVIAALLKPLVWANFRG----LETLLKAQLGLKKWNMVPDTPIEKE-A 289
Query: 316 SCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKL 375
SC + I+ G F G + + + + G + ++ D+ +L G+ KL
Sbjct: 290 SCSLPIVTPGLFESFRDGTVKPIQGTYDRYEDGHVVLTTGDRVPCDLSVLAVGW----KL 345
Query: 376 KA-FLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLI 434
+L + ++ L G +YR ++P +P+M FVG+ S + +AE+ + WL R
Sbjct: 346 GIPYLAQEYRDKLIEADGQYRVYRLAVNPDLPDMGFVGFNSSFCTILSAEMIANWLVRFA 405
Query: 435 DDKFK-LPSAEKM---LEQTSKEMEVMKQSTRFYKRHCISTFSINHSDEICEEMGWNAWR 490
D + PSA++M +E + + + Y C + F H DE+ +MG +
Sbjct: 406 DGQLAHQPSAQEMNANIEMMLNWRRKERPAAQVYGGLCSAPFHFKHFDELLADMGAGVRK 465
Query: 491 KRNWLLEAFSPYGSKDY 507
+ N L E FS ++ Y
Sbjct: 466 RANPLAEQFSYPDARAY 482
|
|
| UNIPROTKB|F1S246 LOC100151788 "Dimethylaniline monooxygenase [N-oxide-forming]" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 70/199 (35%), Positives = 106/199 (53%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIW----KSCS-----YNSTKLQSH 54
+IA+IGAG+SGL A+K P+ FE S+ IGG+W K+ S Y ST +
Sbjct: 5 RIAVIGAGISGLGAIKICLEEGLEPICFEGSNDIGGLWRYEEKTESGRPTVYKSTICNTS 64
Query: 55 RSDYEFTDFPWPNRDDPGFPSY---TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSL 111
+ ++D+P+P+ FP+Y ++I++YL+ YAKHF + K ++F SKV VR
Sbjct: 65 KEMTAYSDYPFPDH----FPNYLHNSKIIEYLQMYAKHFHLLKHIQFLSKVCSVRKRSDF 120
Query: 112 ETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPA--FPNNKG 169
T W+V VQT + Y F+ ++VC+G Y D P++P FP G
Sbjct: 121 SCTGQ-----------WDVVVQTEGKQ--ESYVFDGIMVCSGLYTD-PLLPLQDFP---G 163
Query: 170 PEVFEGQVLHSIDYCKLDK 188
F+GQ +HS +Y +K
Sbjct: 164 ITSFKGQCIHSWEYKSPEK 182
|
|
| ZFIN|ZDB-GENE-030131-2644 si:dkey-239i20.4 "si:dkey-239i20.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 67/196 (34%), Positives = 100/196 (51%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK--------SCS-YNSTKLQSH 54
++A+IGAG SGLAA+K PV FE+SD IGG+W+ CS Y+S + +
Sbjct: 4 RVAVIGAGSSGLAAIKCCLDEGLEPVCFESSDDIGGLWRFREKPETDRCSIYHSLTVNTS 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ ++DFP P+ + P F + I+ Y YA+HF++F+ + F + V VR
Sbjct: 64 KEMMCYSDFPVPD-NFPNFMHNSLIVQYYRLYAEHFNLFEHIHFQTTVRSVRQRPDFSV- 121
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPA--FPNNKGPEV 172
SG WEV V ++ + F+ ++VC G Y PI P FP G +
Sbjct: 122 -SGQ---------WEV-VTADREGQVETHVFDGVLVCAGHYTQ-PIKPLSEFP---GIDT 166
Query: 173 FEGQVLHSIDYCKLDK 188
F G V+HS +Y K D+
Sbjct: 167 FPGTVIHSWEYKKPDQ 182
|
|
| UNIPROTKB|I3LIW4 FMO6P "Dimethylaniline monooxygenase [N-oxide-forming]" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 74/277 (26%), Positives = 129/277 (46%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIW---------KSCSYNST 49
M K+AIIGAGVSGLA+++ P+ FE S+ +GG+W ++ Y S
Sbjct: 1 MTMVKKVAIIGAGVSGLASIRCCLEEGLEPICFERSNDVGGLWQFSDHAEEGRASIYQSV 60
Query: 50 KLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTG 109
S + F DFP+P+ D P + +++ +Y++++A+ ++ + ++F + V ++
Sbjct: 61 FTNSSKEMMCFPDFPYPD-DYPNYMHQSKLQEYIKTFAQKKNLLRYIKFETLVSSIK--- 116
Query: 110 SLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK--YGDVPIIPAFPNN 167
N L G WEV + + F+ +++C+G Y ++P +FP
Sbjct: 117 ------KCPNFLVTGQ--WEVISEKDGKQ--ESTIFDAVMICSGHHVYPNLPT-DSFP-- 163
Query: 168 KGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQP 227
G + F+G HS DY ++ K K+V V+G S D+A E +
Sbjct: 164 -GLDRFQGHYFHSRDY------KGPEVFKGKRVLVIGLGNSGCDIAVELSRL-----ATQ 211
Query: 228 CTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGS 264
+ R+ W + G P+ M Y TRF+ FL +
Sbjct: 212 VIISTRSGSWVMSRVWDDGYPWDMVYVTRFASFLRNA 248
|
|
| UNIPROTKB|P31513 FMO3 "Dimethylaniline monooxygenase [N-oxide-forming] 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 79/269 (29%), Positives = 121/269 (44%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
K+AIIGAGVSGLA+++ P FE S+ IGG+WK + Y S S
Sbjct: 4 KVAIIGAGVSGLASIRSCLEEGLEPTCFEKSNDIGGLWKFSDHAEEGRASIYKSVFSNSS 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F DFP+P+ D P F ++I +Y+ ++AK ++ K ++F + V V TT
Sbjct: 64 KEMMCFPDFPFPD-DFPNFMHNSKIQEYIIAFAKEKNLLKYIQFKTFVSSVNKHPDFATT 122
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEV-- 172
W+V T + F+ ++VC+G + + P P P +
Sbjct: 123 GQ-----------WDVT--TERDGKKESAVFDAVMVCSGHH----VYPNLPKESFPGLNH 165
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232
F+G+ HS DY KE + K+V VVG S D+A E + + + +
Sbjct: 166 FKGKCFHSRDY----KEPG--VFNGKRVLVVGLGNSGCDIATELSRT-----AEQVMISS 214
Query: 233 RTTHWTVPHYRIWGLPFFMFYSTRFSQFL 261
R+ W + G P+ M TRF FL
Sbjct: 215 RSGSWVMSRVWDNGYPWDMLLVTRFGTFL 243
|
|
| UNIPROTKB|I3LS94 FMO3 "Dimethylaniline monooxygenase [N-oxide-forming]" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 74/269 (27%), Positives = 124/269 (46%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
++AIIGAG+SGLA+++ P FE + +GG+WK + Y S S
Sbjct: 4 RVAIIGAGISGLASIRSCLEEGLEPTCFERGEDVGGLWKFSDHAEEGRASIYRSVFTNSS 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F DFP+P+ D P F +++ +Y+ ++AK ++ K ++F + V V T
Sbjct: 64 KEMTCFPDFPFPD-DFPNFMHNSKLQEYITAFAKEKNLLKYIQFKTLVSRVNKHPDFSIT 122
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP--AFPNNKGPEV 172
W+V T + F+ +++C+G + P +P +FP G ++
Sbjct: 123 GQ-----------WDVT--TEKDGQKESVVFDAVMICSGHHV-YPNLPKESFP---GLKL 165
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232
F+G+ HS DY KE L K K+V V+G S D+A E + + + +
Sbjct: 166 FKGKCFHSWDY----KEPG--LFKGKRVLVIGLGNSGCDIATELSHT-----AEQVIISS 214
Query: 233 RTTHWTVPHYRIWGLPFFMFYSTRFSQFL 261
R+ W + G P+ + TRF FL
Sbjct: 215 RSGSWVMSRVWYDGYPWDVMTITRFETFL 243
|
|
| UNIPROTKB|E2RFU7 LOC478994 "Dimethylaniline monooxygenase [N-oxide-forming]" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 66/197 (33%), Positives = 100/197 (50%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIW----KSCS-----YNSTKLQSH 54
+IA+IGAGVSGL A+K P FE S IGG+W K+ S Y S +
Sbjct: 5 RIAVIGAGVSGLGAIKICLEEGLEPTCFEGSHDIGGLWRYEEKAKSSRPSVYESATSNTS 64
Query: 55 RSDYEFTDFPWPNRDDPGFPSY---TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSL 111
+ ++D+P+P+ FP+Y + I++YL Y +HF + K ++F SKV VR
Sbjct: 65 KEMTAYSDYPFPDH----FPNYLHNSRIMEYLRMYVQHFHLLKHIQFLSKVCSVRKRSDF 120
Query: 112 ETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPE 171
T W+V V+T + Y F+ ++VC+G Y D P +P N G +
Sbjct: 121 SCTGQ-----------WDVIVETAGKQ--KSYVFDGIMVCSGLYSD-PFLP-LQNFPGIK 165
Query: 172 VFEGQVLHSIDYCKLDK 188
F+GQ +HS++Y +K
Sbjct: 166 RFKGQYIHSLEYKNPEK 182
|
|
| RGD|619761 Fmo3 "flavin containing monooxygenase 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 79/269 (29%), Positives = 123/269 (45%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
K+A+IGAGVSGLAA++ P FE SD +GG+WK + Y S S
Sbjct: 4 KVAVIGAGVSGLAAIRSCLEEGLEPTCFERSDDVGGLWKFSDHTEEGRASIYQSVFTNSS 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F DFP+P+ D P F +++ +Y+ S+A ++ K ++F + V + TT
Sbjct: 64 KEMMCFPDFPYPD-DFPNFMHNSKLQEYITSFATEKNLLKYIQFETLVTRINKCPDFSTT 122
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEV-- 172
WEV + NS + F+ +++C+G + + P P + P +
Sbjct: 123 GK-----------WEVTTEK-NSKK-ETAVFDAVMICSGHH----VYPHLPKDSFPGLNR 165
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232
F+G+ HS DY KE + K K+V V+G S D+A E + Q +
Sbjct: 166 FKGKCFHSRDY----KEPGTW--KGKRVLVIGLGNSGCDIAAELSHV-----AQQVIISS 214
Query: 233 RTTHWTVPHYRIWGLPFFMFYSTRFSQFL 261
R+ W + G P+ M TRF FL
Sbjct: 215 RSGSWVMSRVWNDGYPWDMVVITRFQTFL 243
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LMA1 | FMO1_ARATH | 1, ., 1, 4, ., 1, 3, ., - | 0.7210 | 0.9823 | 0.9471 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 511 | |||
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 8e-44 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 5e-38 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 8e-17 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 1e-14 | |
| TIGR04046 | 400 | TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido | 5e-09 | |
| COG1232 | 444 | COG1232, HemY, Protoporphyrinogen oxidase [Coenzym | 9e-08 | |
| PRK07233 | 434 | PRK07233, PRK07233, hypothetical protein; Provisio | 2e-07 | |
| pfam13434 | 335 | pfam13434, K_oxygenase, L-lysine 6-monooxygenase ( | 4e-07 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 4e-06 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 1e-05 | |
| PRK11883 | 451 | PRK11883, PRK11883, protoporphyrinogen oxidase; Re | 4e-05 | |
| COG2907 | 447 | COG2907, COG2907, Predicted NAD/FAD-binding protei | 4e-05 | |
| PRK07208 | 479 | PRK07208, PRK07208, hypothetical protein; Provisio | 5e-05 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 9e-05 | |
| pfam13450 | 66 | pfam13450, NAD_binding_8, NAD(P)-binding Rossmann- | 1e-04 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 2e-04 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 7e-04 | |
| PLN02576 | 496 | PLN02576, PLN02576, protoporphyrinogen oxidase | 0.002 | |
| COG3349 | 485 | COG3349, COG3349, Uncharacterized conserved protei | 0.003 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 0.003 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 8e-44
Identities = 142/503 (28%), Positives = 219/503 (43%), Gaps = 85/503 (16%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK---------SCSYNSTKLQSH 54
K+A+IGAGVSGL+++K P FE SD IGG+W+ + Y S S
Sbjct: 3 KVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSS 62
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ F+DFP+P D P F ++ L+YL +AKHFD+ K ++F + V V T+
Sbjct: 63 KEMSCFSDFPFPE-DYPNFMHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTS 121
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP--AFPNNKGPEV 172
WEV + + F+ ++VCTG + + P +P +FP G
Sbjct: 122 GQ-----------WEVVTEHEGKQ--ESAVFDAVMVCTGHHTN-PHLPLESFP---GINK 164
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232
F+GQ HS DY K + K+V V+G S D+A E + + +
Sbjct: 165 FKGQYFHSRDY----KHPEG--FQGKRVLVIGLGNSGGDIAVELSRT-----AAQVFLST 213
Query: 233 RTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESY 292
RT W + WG P+ M +TRF FL + L+ E
Sbjct: 214 RTGSWVLSRVSDWGYPWDMLLTTRFCSFLRNILPTRISNWLM---------------ERQ 258
Query: 293 LLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKI----VFKRASKWWFWKG 348
L + YGL P + + E ++ +I V + S F +
Sbjct: 259 LNKRFNHENYGLSPKN----------GKLAKEPIVNDELPNRILCGAVKVKPSVKEFTET 308
Query: 349 GLEFEDNTKLEA-DVVILCTGYDGKKKLKAFLPEPF--QSLLEHPSGLLPLYRGTIHPLI 405
FED T E DVVI TGY +F PF +SL++ + + LY+ P +
Sbjct: 309 SAIFEDGTVEEDIDVVIFATGYT-----FSF---PFLEESLVKVETNKISLYKYVFPPNL 360
Query: 406 --PNMAFVGYIESV-SNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTR 462
P +A +G I+ + S + T EL++ W R+ KLPS+ KM+E+ +++ E +
Sbjct: 361 EKPTLAIIGLIQPLGSIIPTVELQARWAVRVFKGLCKLPSSSKMMEEITEKKEKKIKRFG 420
Query: 463 FYKRHCISTFSINHSDEICEEMG 485
F + I T I + DE+ +G
Sbjct: 421 FSQSSTIQTDYIAYMDELAAFIG 443
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 5e-38
Identities = 113/454 (24%), Positives = 170/454 (37%), Gaps = 68/454 (14%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRHHNP---VVFEASDSIGGIWKSCSYNSTKLQSHRSD 57
+A ++ +AIIGAG SGLAA L+ V+FE D +GG W+ Y +L S +
Sbjct: 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWL 64
Query: 58 YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG 117
F P+ D F + EI DY++ Y + + + +RFN++V +
Sbjct: 65 LGFPFLPFR--WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWD--------- 113
Query: 118 GNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQV 177
W V + +F+VV TG P IP F G + F+G++
Sbjct: 114 -----EDTKRWTVTT---SDGGTGELTADFVVVATGHLS-EPYIPDFA---GLDEFKGRI 161
Query: 178 LHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237
LHS D+ + L+ K+V V+G SA+D+A E AE G T+ R+
Sbjct: 162 LHSADWPN------PEDLRGKRVLVIGAGASAVDIAPELAEV-----GASVTLSQRSPPH 210
Query: 238 TVPHYRIWGLPFFMFYSTRFSQFLHGS----PNQSLLRTLLCLLLSPLRRGVSKFIESYL 293
+P + G + + L + L L P K +E+ L
Sbjct: 211 ILP-KPLLGEE--VGGRLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALL 267
Query: 294 ---LWKLPLLKYGLKPDHPFEEDYA-SCQMAIMPEGFFS-------EAEKGKIVFKRASK 342
L L L G++ D DYA + F E I
Sbjct: 268 RAALRFLV-LDAGVRED--LGPDYAPGDGRLVPDGDLFEAGASGDVEVVTEIIDR----- 319
Query: 343 WWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIH 402
F +GG+ + + EADV+I TG D L L Y+G
Sbjct: 320 --FTEGGILLDSGREEEADVIITATGLDA-NDLSGAAGGY-GGDPWDKDAPLA-YKGLAL 374
Query: 403 PLIPNMAFVGYIESVSNLHTAELRSIWLSRLIDD 436
PN+ +G S A LR+ L+ D
Sbjct: 375 SGGPNLFLIGGPTKASGGLKAALRAELRITLLAD 408
|
Length = 443 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 8e-17
Identities = 72/245 (29%), Positives = 113/245 (46%), Gaps = 57/245 (23%)
Query: 3 NYSKIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGGIW--------KSCSYNSTKLQ 52
N +A+IGAG +GL A ++LR H VVFE +GG+W S + T+
Sbjct: 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSI 68
Query: 53 SHRSDYE------------FTDFPW------PNRDDPGFPSYTEILDYLESYAKHFDVFK 94
H S YE + DFP+ +RD +PS+ E+L YL+ +A+ F + +
Sbjct: 69 VHSSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEE 128
Query: 95 CVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG-FEFLVVCTG 153
VRF ++VV V E D W VQ+ NS + F+ +VVC G
Sbjct: 129 MVRFETEVVRV------EPVDGK----------WR--VQSKNSGGFSKDEIFDAVVVCNG 170
Query: 154 KYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLA 213
Y + P + P G + + G+ +HS +Y D K++ V V+G S D++
Sbjct: 171 HYTE-PNVAHIP---GIKSWPGKQIHSHNYRVPDP------FKNEVVVVIGNFASGADIS 220
Query: 214 KECAE 218
++ A+
Sbjct: 221 RDIAK 225
|
Length = 461 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-14
Identities = 57/243 (23%), Positives = 86/243 (35%), Gaps = 55/243 (22%)
Query: 8 AIIGAGVSGLAAVKQLRHH--NPVV-FEASDSIGGIWKSCSYNSTKLQS--------HRS 56
++GAG +G+A L PV+ + GG W Y +L
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHW-RKWYPFVRLHQPSFFYGDFGMP 59
Query: 57 DYE-FTDFPWPNRDDPG-FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
D + P D S EI YLE A+ + + +R +++V V G
Sbjct: 60 DLNALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGLP--IRLSTRVTAVERDGG---- 113
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFE 174
+ V + + +++ +++V TG + VP P FP V
Sbjct: 114 ------------RFVV--RLTDGETVRA---DYVVDATGAFS-VPKPPGFPGADAEGVHL 155
Query: 175 GQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234
VL ID LK K VAV+G +AID A + G+ T I R
Sbjct: 156 VDVLERID------------LKGKTVAVIGGGHTAIDAALNLLDL-----GKDVTWITRR 198
Query: 235 THW 237
W
Sbjct: 199 PSW 201
|
Length = 202 |
| >gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 56/209 (26%), Positives = 82/209 (39%), Gaps = 36/209 (17%)
Query: 7 IAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
+ IIGAG +GL+ L+ VV E ++ W+ ++S L + P
Sbjct: 3 VVIIGAGQAGLSVSYYLKQAGIDHVVLE-KHTVAHSWRDERWDSFCLVTPNWQCRLPGHP 61
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124
+ D GF EI+ YL+ YA+ F+ VR EV SL +GG +
Sbjct: 62 YDGTDPDGFMVKDEIVAYLDGYARSFNP--PVREG---TEVT---SLRKHGAGGFRVSTS 113
Query: 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYC 184
+ A Q +V+ TG Y VP+IP +V LHS +Y
Sbjct: 114 AGAFT-ADQ--------------VVIATGGY-HVPVIPPLAERLPADV---LQLHSSEY- 153
Query: 185 KLDKEAASQLLKDKKVAVVGFKKSAIDLA 213
+ L D V VVG +S +A
Sbjct: 154 ---RNPDQ--LPDGAVLVVGSGQSGCQIA 177
|
Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400 |
| >gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNS 48
KIAIIG G++GL+A +L+ P +FEA D +GG+ ++ +
Sbjct: 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG 48
|
Length = 444 |
| >gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39
KIAI+G G++GLAA +L R H VFEA D +GG
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36
|
Length = 434 |
| >gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring) | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 4e-07
Identities = 44/162 (27%), Positives = 63/162 (38%), Gaps = 35/162 (21%)
Query: 73 FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAV 132
FPS E DYL+ A + VRF ++V EV + V
Sbjct: 91 FPSRREFNDYLQWAASQLEN---VRFGAEVEEVEP--------------DDSGFLLRV-- 131
Query: 133 QTHNSNSIQRYGFEFLVVCTGKYGDVPIIPA-FPNNKGPEVFEGQVLHSIDYCKLDKEAA 191
T ++ + Q Y LV+ TG P IP G VF HS +Y L K
Sbjct: 132 HTRDTGTEQTYLARNLVLGTGT---TPYIPECAKPLPGERVF-----HSSEYL-LRKP-- 180
Query: 192 SQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233
+LL K++ VVG +SA ++ + + G T + R
Sbjct: 181 -RLLAGKRITVVGGGQSAAEIFLDL---LRRQPGYQLTWVTR 218
|
This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 44/214 (20%), Positives = 65/214 (30%), Gaps = 62/214 (28%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSI----GGIWKSCSYNSTKLQSHRSDYE 59
+ IIG G +GLAA +L + E G + K L+
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPK-----KLLLEVAEGLEL 55
Query: 60 FTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGN 119
L E K F V V ++VV++ D G
Sbjct: 56 A-----------------IGLALPEEVYKEFGVE--VLLGTEVVDI---------DRGEK 87
Query: 120 LLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLH 179
V + + + ++ L++ TG P IP P G EV L
Sbjct: 88 -----------TVVLKDVETGREITYDKLIIATGAR---PRIPGIP---GVEVA---TLR 127
Query: 180 SIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLA 213
+ E L K+V VVG ++LA
Sbjct: 128 GVIDS---DEILELLELPKRVVVVGGGYIGLELA 158
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39
K+A++G+G +GLAA QL H VFE +D IGG
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
|
Length = 471 |
| >gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGI 40
K+AIIG G++GL+A +L P + EASD +GG
Sbjct: 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40
|
Length = 451 |
| >gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 6 KIAIIGAGVSGL-AAVKQLRHHNPVVFEASDSIGG 39
KIA+IG+G+SGL AA R H+ +FEA +GG
Sbjct: 10 KIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGG 44
|
Length = 447 |
| >gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYN 47
M N + IIGAG +GL A +L R + V EA +GGI ++ +Y
Sbjct: 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK 49
|
Length = 479 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 9e-05
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+A+IGAG +GL A +L ++ +FEA D GG
Sbjct: 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
|
Length = 457 |
| >gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 9 IIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYN 47
I+GAG+SGL A L R + +V E D IGG S
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSERDP 41
|
Length = 66 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 39/212 (18%), Positives = 62/212 (29%), Gaps = 61/212 (28%)
Query: 6 KIAIIGAGVSGLAAV---KQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTD 62
+ IIG G +GL A + ++ E GG + +Y
Sbjct: 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGG--------QLTKTTDVENY---- 51
Query: 63 FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLP 122
PGFP + +E + + F +V +V G
Sbjct: 52 --------PGFPGGILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGP----------- 92
Query: 123 AGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEV-FEGQVLHSI 181
V+T Y + +++ TG A E FEG+ +
Sbjct: 93 -------FKVKTDK----GTYEAKAVIIATGAG-------ARKLGVPGEEEFEGKGVSYC 134
Query: 182 DYCKLDKEAASQLLKDKKVAVVGFKKSAIDLA 213
C K K V V+G SA++ A
Sbjct: 135 ATCD-------GFFKGKDVVVIGGGDSAVEEA 159
|
Length = 305 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 348 GGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHP-LIP 406
G + F++ + AD ++ CTGY K FL E + + + PLY+ P L P
Sbjct: 265 GSIVFKNGKVVYADTIVHCTGY---KYHFPFL-ETNGYMRIDENRVEPLYKHVFPPALAP 320
Query: 407 NMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTS---KEMEVMKQSTRF 463
++F+G E++S W++ ++ + LPS +KM+E + +E + R+
Sbjct: 321 GLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRY 380
Query: 464 YKRHCISTFSINHSDEICEEMG 485
H + + + I EE G
Sbjct: 381 --THKLGKIQSEYLNWIAEECG 400
|
Length = 461 |
| >gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 8 AIIGAGVSGLAAVKQLRHH---NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
A++GAGVSGLAA L N +V EA D +GG + S D F
Sbjct: 16 AVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG----------NITSVSED----GFI 61
Query: 65 W---PNRDDPGFPSYTEILD 81
W PN P P T +D
Sbjct: 62 WEEGPNSFQPSDPELTSAVD 81
|
Length = 496 |
| >gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI---WKSCSYNST 49
++AI GAG++GLAA +L ++ ++EA D +GG W+ N
Sbjct: 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHV 50
|
Length = 485 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
++A+IG G +GL+A LR H +FEA +GG
Sbjct: 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
|
Length = 564 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 511 | |||
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 100.0 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 100.0 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 100.0 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 100.0 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.97 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 99.97 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 99.95 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.94 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 99.94 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.94 | |
| PRK06116 | 450 | glutathione reductase; Validated | 99.94 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 99.94 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 99.94 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.94 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 99.94 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 99.94 | |
| PLN02507 | 499 | glutathione reductase | 99.94 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 99.94 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 99.94 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 99.93 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.93 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.93 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.93 | |
| PRK06370 | 463 | mercuric reductase; Validated | 99.93 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.93 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.93 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 99.93 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.93 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.93 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.93 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 99.93 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.92 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.92 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.92 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 99.92 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.92 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.92 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.92 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.92 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.92 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.92 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.92 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.91 | |
| PLN02546 | 558 | glutathione reductase | 99.91 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.91 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.91 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.91 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.91 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.91 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.91 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.91 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.9 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 99.9 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.9 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.9 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.9 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.89 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.89 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.89 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.88 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.88 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 99.87 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.87 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.86 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.85 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.85 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.85 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.85 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.84 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.84 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.84 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.83 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 99.82 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.81 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.8 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.8 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.79 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.79 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.78 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.77 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.77 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.75 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.74 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.63 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.59 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.56 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.53 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.52 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.5 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 99.37 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.29 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.28 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.23 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.18 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.14 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 99.12 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.1 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.01 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 99.0 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.98 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.96 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.95 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.95 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.95 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.95 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.94 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.94 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.93 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.93 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.92 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.91 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.9 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.89 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.89 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.89 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.88 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.87 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.86 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.86 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.84 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.83 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.82 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.82 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.82 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.81 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.81 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.8 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.8 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.8 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.79 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.79 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.78 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.77 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.77 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.76 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.75 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.73 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.73 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.73 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.73 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.72 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.72 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.71 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.7 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.7 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.69 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.68 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.66 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.66 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.66 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.64 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.64 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.63 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.61 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.61 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.6 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.6 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.6 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.6 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 98.59 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.58 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.58 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.57 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.55 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.55 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.55 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.53 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.51 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.51 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.5 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 98.5 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.48 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.47 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.46 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.46 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.46 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.45 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.45 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.44 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.43 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.42 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.42 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.41 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.41 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.41 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 98.39 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.39 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.39 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.38 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.38 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.37 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.37 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.36 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 98.35 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.34 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.34 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.34 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.33 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.32 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.32 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.32 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.31 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.31 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.3 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.3 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.29 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.29 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.29 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.26 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.25 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.25 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.25 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.24 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.24 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.24 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.23 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.23 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.23 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 98.23 | |
| PLN02985 | 514 | squalene monooxygenase | 98.23 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.22 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.21 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.21 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.2 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.2 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 98.2 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.19 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.19 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.19 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.18 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.18 | |
| PLN02507 | 499 | glutathione reductase | 98.16 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.16 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.16 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.16 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.15 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.15 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.15 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 98.14 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.14 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.13 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.13 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.13 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.13 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.12 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.12 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 98.12 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.12 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.11 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.11 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.1 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.1 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.09 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 98.08 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.08 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.08 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.07 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.06 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.05 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.05 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 98.05 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.04 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 98.04 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 98.02 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.01 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.01 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 98.0 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.0 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 97.99 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 97.99 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.98 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 97.97 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.95 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.95 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.94 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 97.94 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.94 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 97.92 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 97.92 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 97.9 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.89 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.89 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 97.89 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.89 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.89 | |
| PLN02568 | 539 | polyamine oxidase | 97.89 | |
| PLN02676 | 487 | polyamine oxidase | 97.88 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.88 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.87 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.87 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.85 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 97.85 | |
| PLN02546 | 558 | glutathione reductase | 97.85 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 97.83 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.82 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.81 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.79 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 97.79 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 97.79 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.78 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.77 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.76 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.75 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.69 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.68 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 97.67 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.67 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.64 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.64 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.64 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.64 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.63 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 97.6 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.6 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.58 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 97.58 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.58 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 97.56 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.56 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.52 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.51 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.47 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 97.47 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.47 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.46 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.46 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 97.4 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.38 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.34 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.34 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.33 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.33 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.29 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 97.29 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.27 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.24 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.24 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 97.23 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 97.2 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 97.19 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.18 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 97.18 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 97.14 | |
| PLN03000 | 881 | amine oxidase | 97.13 | |
| PLN02612 | 567 | phytoene desaturase | 97.12 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.11 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.09 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.06 | |
| PLN02976 | 1713 | amine oxidase | 97.06 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.05 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.97 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 96.96 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 96.94 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 96.93 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 96.92 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 96.91 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 96.91 | |
| PRK05868 | 372 | hypothetical protein; Validated | 96.9 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 96.9 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 96.88 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 96.82 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 96.81 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 96.78 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.76 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 96.75 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 96.7 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 96.7 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 96.63 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.6 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.59 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 96.57 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 96.57 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 96.49 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 96.46 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 96.46 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 96.44 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 96.4 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.36 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 96.33 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 96.33 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 96.31 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 96.31 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 96.27 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 96.26 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 96.23 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 96.18 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 96.18 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 96.16 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 96.16 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 96.15 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 96.15 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 96.13 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 96.12 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 96.1 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 96.1 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 96.09 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.09 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 96.02 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 96.02 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 96.02 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 96.01 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 95.98 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 95.97 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 95.96 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 95.96 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 95.95 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 95.92 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 95.91 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 95.84 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 95.84 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 95.79 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 95.78 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 95.78 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 95.78 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.76 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.75 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 95.73 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 95.7 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 95.57 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 95.57 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 95.57 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 95.56 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 95.55 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 95.54 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 95.53 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 95.45 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 95.44 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 95.43 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 95.42 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.28 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 95.27 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 95.25 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 95.24 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 95.24 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 95.22 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 95.18 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 95.17 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 95.1 | |
| PLN02785 | 587 | Protein HOTHEAD | 95.08 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 95.03 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 95.02 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 94.96 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 94.94 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 94.82 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 94.76 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 94.65 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 94.58 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.48 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 94.43 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 94.43 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 94.42 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 94.38 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 94.33 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 94.27 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 94.27 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 94.2 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 94.13 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 94.1 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 94.09 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 94.06 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 93.92 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 93.69 | |
| KOG3923 | 342 | consensus D-aspartate oxidase [Amino acid transpor | 93.65 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 93.44 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 93.25 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 93.25 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 93.2 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 92.99 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 92.84 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 92.77 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 92.67 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.62 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 92.5 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 92.44 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 92.4 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 92.29 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 92.16 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 91.94 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 91.92 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 91.91 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 91.85 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 91.78 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.69 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 91.67 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 91.67 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 91.59 | |
| TIGR03197 | 381 | MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri | 91.57 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 91.48 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 91.38 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 91.36 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 91.35 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.23 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 91.23 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 91.17 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.14 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 91.01 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 91.0 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 90.89 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 90.79 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 90.78 |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-77 Score=612.26 Aligned_cols=449 Identities=34% Similarity=0.584 Sum_probs=262.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC---------CcCceeccCCCCccccCCCCCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC---------SYNSTKLQSHRSDYEFTDFPWPNRDDPG 72 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (511)
.++|+|||||+|||++|+.| .|++++|||+++++||+|+.+ .|+++.+|+|+.+|+|+|+|+|+.. +.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~-p~ 79 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY-PD 79 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC-SS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC-CC
Confidence 37899999999999999999 999999999999999999852 5899999999999999999999885 89
Q ss_pred CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 73 FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 73 ~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
|+++.++.+||+.|+++|++.++|+|+++|++|++.++. ...++|+|++++. ++..+..||+||+||
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~-----------~~~~~W~V~~~~~--g~~~~~~fD~Vvvat 146 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDF-----------SATGKWEVTTEND--GKEETEEFDAVVVAT 146 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTT-----------T-ETEEEEEETTT--TEEEEEEECEEEEEE
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeecccc-----------CCCceEEEEeecC--CeEEEEEeCeEEEcC
Confidence 999999999999999999999999999999999985331 1257899987543 444567899999999
Q ss_pred cccCCCCCCCC--CCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 153 GKYGDVPIIPA--FPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 153 G~~~~~p~~p~--~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
|++ ..|++|. +| |++.|.|+++||.+|++ ++.++||||+|||+|.||+|+|.+|+..++ +|++
T Consensus 147 G~~-~~P~~P~~~~~---G~e~F~G~i~HS~~yr~------~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~-----~v~~ 211 (531)
T PF00743_consen 147 GHF-SKPNIPEPSFP---GLEKFKGEIIHSKDYRD------PEPFKGKRVLVVGGGNSGADIAVELSRVAK-----KVYL 211 (531)
T ss_dssp -SS-SCESB-----C---TGGGHCSEEEEGGG--T------GGGGTTSEEEEESSSHHHHHHHHHHTTTSC-----CEEE
T ss_pred CCc-CCCCCChhhhh---hhhcCCeeEEccccCcC------hhhcCCCEEEEEeCCHhHHHHHHHHHHhcC-----CeEE
Confidence 999 6999995 88 99999999999999998 567999999999999999999999998765 4999
Q ss_pred EEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcc
Q 010421 231 IVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPF 310 (511)
Q Consensus 231 ~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 310 (511)
+.|++.|++|+....|.|.|..+..|+..++...... ++.....+..++..+....++|.|.+..
T Consensus 212 s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~---------------~~~~~~~~~~l~~~~~~~~~gl~p~~~~ 276 (531)
T PF00743_consen 212 STRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPE---------------SLSNWLLEKKLNKRFDHENYGLKPKHRF 276 (531)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred EEecccccccccccccccccccccccccccccccccc---------------cccccccccccccccccccccccccccc
Confidence 9999999999987778999887777765544321111 1111122223333445556788888765
Q ss_pred ccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEcCCcee-eccEEEEecCCCCcccccccCCCcccccccC
Q 010421 311 EEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKL-EADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~dG~~~-~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
.++.+++++++.+.+.+|+|+++. .|.++++++|+|+||+.+ ++|+||+||||+.+++|++ ..+ ...
T Consensus 277 -----~~~~~~ind~l~~~i~~G~i~vk~-~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~---~~~---~~~ 344 (531)
T PF00743_consen 277 -----FSQHPTINDELPNRIRSGRIKVKP-DIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLD---ESL---IKV 344 (531)
T ss_dssp ---------------------------EE--EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB----TTT---T-S
T ss_pred -----cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc---ccc---ccc
Confidence 456678999999999999999864 589999999999999985 6999999999999987653 222 222
Q ss_pred CCCcccceeeecCCCC--CceEEEeecccc-hhhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCC
Q 010421 390 PSGLLPLYRGTIHPLI--PNMAFVGYIESV-SNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKR 466 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~--pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (511)
.++...||++++++++ |+|+|||++... +.++++|+||||+|++|+|+.+||+.++|.+++.++.+++.+......+
T Consensus 345 ~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~~~~~~ 424 (531)
T PF00743_consen 345 DDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRFGFSPR 424 (531)
T ss_dssp -SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT--SHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3445679999999875 899999998764 4578999999999999999999999999999988876655443222234
Q ss_pred cceeeeccccHHHHHHhhCCCCCCchhhHhh-------hcccCCccCCC
Q 010421 467 HCISTFSINHSDEICEEMGWNAWRKRNWLLE-------AFSPYGSKDYE 508 (511)
Q Consensus 467 ~~~~~~~~~y~d~l~~~~g~~~~~~~~~~~~-------~~~~~~~~~y~ 508 (511)
+....++..|+|+||+++|+.|...+.|++| +|+|+.|++||
T Consensus 425 ~~~~~d~~~y~deLA~~iG~~P~~~~l~~~dp~l~~~~~~gp~~p~~YR 473 (531)
T PF00743_consen 425 HTIQVDYIDYMDELAREIGCKPNFWKLFLTDPKLARKLYFGPCTPYQYR 473 (531)
T ss_dssp HHHHHHHHHHHHTTS----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5566788999999999999999876655544 89999999998
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=470.99 Aligned_cols=366 Identities=27% Similarity=0.491 Sum_probs=292.2
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--------------------CcCceeccCCCCccc
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--------------------SYNSTKLQSHRSDYE 59 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--------------------~~~~~~~~~~~~~~~ 59 (511)
.+.++|+|||||+|||+||++| .|++|+|||+++.+||+|.+. .|.++++|+|+..|.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 3468999999999999999999 899999999999999999752 388899999999999
Q ss_pred cCCCCCCCC------CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEE
Q 010421 60 FTDFPWPNR------DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQ 133 (511)
Q Consensus 60 ~~~~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (511)
|+++|++.. ..+.|+++.++.+||+++++++++.++|+|+++|++|++. +++|+|++.
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~----------------~~~w~V~~~ 151 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV----------------DGKWRVQSK 151 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec----------------CCeEEEEEE
Confidence 999998652 1367999999999999999999998889999999999973 568999987
Q ss_pred eCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHH
Q 010421 134 THNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLA 213 (511)
Q Consensus 134 ~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a 213 (511)
++. +...+..||+||+|||++ ..|++|.+| |.+.|.|.++|++.|+. +..+++|+|+|||+|.||+|+|
T Consensus 152 ~~~-~~~~~~~~d~VIvAtG~~-~~P~~P~ip---G~~~f~G~~iHs~~yr~------~~~~~gk~VvVVG~G~Sg~diA 220 (461)
T PLN02172 152 NSG-GFSKDEIFDAVVVCNGHY-TEPNVAHIP---GIKSWPGKQIHSHNYRV------PDPFKNEVVVVIGNFASGADIS 220 (461)
T ss_pred cCC-CceEEEEcCEEEEeccCC-CCCcCCCCC---CcccCCceEEEecccCC------ccccCCCEEEEECCCcCHHHHH
Confidence 643 233357899999999998 599999999 99999999999999987 4568999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010421 214 KECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYL 293 (511)
Q Consensus 214 ~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (511)
.+|+..+.+ |+++.|++... ...
T Consensus 221 ~~L~~~a~~-----V~l~~r~~~~~--~~~-------------------------------------------------- 243 (461)
T PLN02172 221 RDIAKVAKE-----VHIASRASESD--TYE-------------------------------------------------- 243 (461)
T ss_pred HHHHHhCCe-----EEEEEeecccc--ccc--------------------------------------------------
Confidence 999988654 99999975310 000
Q ss_pred hccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEe-CCcEEEcCCceeeccEEEEecCCCCc
Q 010421 294 LWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFW-KGGLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 294 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~-~~~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
.++ .| ..++.+ ...|.++. +++|+|+||+.+++|.||+||||+++
T Consensus 244 --~~~------~~-------------------------~~~v~~-~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~ 289 (461)
T PLN02172 244 --KLP------VP-------------------------QNNLWM-HSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYH 289 (461)
T ss_pred --cCc------CC-------------------------CCceEE-CCcccceecCCeEEECCCCCccCCEEEECCcCCcc
Confidence 000 00 011111 11233333 34599999999999999999999999
Q ss_pred ccccccCCCcccccccCCCCcccceeeecCCCC-CceEEEeecccchhhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010421 373 KKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLI-PNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTS 451 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~-pnl~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~ 451 (511)
++|++-. ..+..+.+...+||++++++.. |+|+|||.+....+++++|+||+|+|++|+|+..||+.++|.++++
T Consensus 290 ~pfL~~~----~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~ 365 (461)
T PLN02172 290 FPFLETN----GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDIN 365 (461)
T ss_pred ccccCcc----cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence 8875411 1111233445579999999975 9999999987777889999999999999999999999999999998
Q ss_pred HHHHHHHHhccccCC--cceeeeccccHHHHHHhhCCCCCC
Q 010421 452 KEMEVMKQSTRFYKR--HCISTFSINHSDEICEEMGWNAWR 490 (511)
Q Consensus 452 ~~~~~~~~~~~~~~~--~~~~~~~~~y~d~l~~~~g~~~~~ 490 (511)
++.+.++... ..++ |.+...+..|+|+|++++|+.|..
T Consensus 366 ~~~~~~~~~g-~~~r~~h~~~~~~~~y~~~la~~~g~~~~~ 405 (461)
T PLN02172 366 AWYASLEALG-IPKRYTHKLGKIQSEYLNWIAEECGCPLVE 405 (461)
T ss_pred HHHHHHHhcC-CCCceeEEcCccHHHHHHHHHHHhCCCCCH
Confidence 8876554422 2222 344445789999999999998743
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=404.04 Aligned_cols=388 Identities=30% Similarity=0.481 Sum_probs=294.8
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--------C-cCceeccCCCCccccCCCCCCCCCC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--------S-YNSTKLQSHRSDYEFTDFPWPNRDD 70 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (511)
.+.++|+|||||+|||++|+.| .|++++||||.+.+||+|.+. . |..+++|.|+..|+|+++|+++..+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 3578999999999999999999 999999999999999999985 4 9999999999999999999998865
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEE
Q 010421 71 PGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVV 150 (511)
Q Consensus 71 ~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVl 150 (511)
..||++.++.+||++||++|++.+.|+|+++|..++... +|.|.|...+..+. +....||.||+
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~---------------~gkW~V~~~~~~~~-~~~~ifd~VvV 147 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID---------------KGKWRVTTKDNGTQ-IEEEIFDAVVV 147 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc---------------CCceeEEEecCCcc-eeEEEeeEEEE
Confidence 777999999999999999999999999999999999841 37999999887644 45789999999
Q ss_pred eecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 151 CTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 151 AtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
|||++ ..|++|.+++. +++.|.|+++||++|+. ++.+.+|+|+|||+|.||+|++.+++..+.. |++
T Consensus 148 ctGh~-~~P~~P~~~g~-~~~~f~G~~iHS~~Yk~------~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~-----v~~ 214 (448)
T KOG1399|consen 148 CTGHY-VEPRIPQIPGP-GIESFKGKIIHSHDYKS------PEKFRDKVVLVVGCGNSGMDISLDLLRVAKE-----VHL 214 (448)
T ss_pred cccCc-CCCCCCcCCCC-chhhcCCcceehhhccC------cccccCceEEEECCCccHHHHHHHHHHhccC-----cce
Confidence 99999 58999999822 27799999999999997 5679999999999999999999999988754 787
Q ss_pred EEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcc
Q 010421 231 IVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPF 310 (511)
Q Consensus 231 ~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 310 (511)
..++ +.... .+
T Consensus 215 ~~~~-----~~~~~--~~-------------------------------------------------------------- 225 (448)
T KOG1399|consen 215 SVVS-----PKVHV--EP-------------------------------------------------------------- 225 (448)
T ss_pred eeec-----ccccc--cc--------------------------------------------------------------
Confidence 7662 10000 00
Q ss_pred ccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEc-CCceeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 311 EEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFE-DNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~-dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
......++..+.. |..+++++.++. ++....+|.||+||||...+++++ .... ....
T Consensus 226 -----------------~~~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~---~~~~-~~~~ 283 (448)
T KOG1399|consen 226 -----------------PEILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLE---TLGL-GTVR 283 (448)
T ss_pred -----------------cceeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEeecceec---cCCc-eeec
Confidence 0000112333344 788889996655 555688999999999999988653 2222 2334
Q ss_pred CCCcccceeeecCCCC-CceEEEeecccchhhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCcc
Q 010421 390 PSGLLPLYRGTIHPLI-PNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHC 468 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~-pnl~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (511)
++...++|++++++.+ |.+.++|.......++.+|+|++|++++++|+.++|+.++|..+.....+.++....-..+++
T Consensus 284 ~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~~~~~t 363 (448)
T KOG1399|consen 284 DNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLATGRHT 363 (448)
T ss_pred cCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhcccccccc
Confidence 5556789999998775 566776655443678999999999999999999999999998887766544433211102222
Q ss_pred eee---eccccHHHHHHhhCCCCCCchhhHhhhcccCCccCCCC
Q 010421 469 IST---FSINHSDEICEEMGWNAWRKRNWLLEAFSPYGSKDYED 509 (511)
Q Consensus 469 ~~~---~~~~y~d~l~~~~g~~~~~~~~~~~~~~~~~~~~~y~~ 509 (511)
... ....|...++...|+..+-....+.-|++|+++..|+-
T Consensus 364 ~~~~~~~l~~y~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~ 407 (448)
T KOG1399|consen 364 HVPDYDELAEYINWFADLCGFPKTEPWLAKEGWKGPCGLYAYGL 407 (448)
T ss_pred cccchHHHHHHhhhhhhhcCCCCcchHHhhhhccCccceeEeec
Confidence 111 23345555555555544322222334778988887763
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=358.47 Aligned_cols=388 Identities=27% Similarity=0.379 Sum_probs=284.4
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
+..+||+|||||+|||++|++| .|.+ ++||||++++||+|+.++||++++++|+..++|+++|++ + ...++...+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~-~~~~~~~~~ 83 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-W-DEAFAPFAE 83 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-C-cccCCCccc
Confidence 3568999999999999999999 8888 999999999999999999999999999999999999998 3 377888888
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.+|+.+++++|++..++.++++|..+++. + ....|+|+++++... ++.||+||+|||++ +.
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~--~------------~~~~w~V~~~~~~~~---~~~a~~vV~ATG~~-~~ 145 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWD--E------------DTKRWTVTTSDGGTG---ELTADFVVVATGHL-SE 145 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEec--C------------CCCeEEEEEcCCCee---eEecCEEEEeecCC-CC
Confidence 999999999999999999999999999883 2 267999999887521 17799999999999 69
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
|++|.|+ |.+.|.|.++||++|++ +..++||+|+|||+|+||+|+|.+|++.+++ ||+++|++.|+
T Consensus 146 P~iP~~~---G~~~f~g~~~HS~~~~~------~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~-----vt~~qRs~~~~ 211 (443)
T COG2072 146 PYIPDFA---GLDEFKGRILHSADWPN------PEDLRGKRVLVIGAGASAVDIAPELAEVGAS-----VTLSQRSPPHI 211 (443)
T ss_pred CCCCCCC---CccCCCceEEchhcCCC------ccccCCCeEEEECCCccHHHHHHHHHhcCCe-----eEEEecCCCce
Confidence 9999999 99999999999999998 4679999999999999999999999999754 99999999999
Q ss_pred ecCcccCCccchhhhhhhhhhhhcC--CCchh-HHHHHHH----hh-hhhhHHHHHHHHHHHHhccCC--cccCCCCCCC
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHG--SPNQS-LLRTLLC----LL-LSPLRRGVSKFIESYLLWKLP--LLKYGLKPDH 308 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~--~~~~~-~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~p~~ 308 (511)
+|...... +... .......+.. ..... +...... .. ...............+..... ..+..+.|.+
T Consensus 212 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 288 (443)
T COG2072 212 LPKPLLGE-EVGG--RLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDY 288 (443)
T ss_pred eccccccc-chHH--HHHHhhhCccceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCC
Confidence 99875211 1110 0011100000 00000 0000000 00 000111111222222222211 1222344543
Q ss_pred ccccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEcCCceeeccEEEEecCCCCc-ccccccCCCcccccc
Q 010421 309 PFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGK-KKLKAFLPEPFQSLL 387 (511)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~-~~~~~~~~~~~~~~~ 387 (511)
.. .|++...+..+++....+++.++...+..+++.++...+|.+++.|+++.+||+..+ .... ......
T Consensus 289 ~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~-----~~~~~~ 358 (443)
T COG2072 289 AP-----GDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGA-----AGGYGG 358 (443)
T ss_pred Cc-----cccccccccchhhhhhhcccceeeccccccCCcceecCCCccccceEEEecCCCchhheeee-----cccccc
Confidence 32 566666677899999999999999999999999998888888999999999999983 2211 111111
Q ss_pred cC-CCCcccceeeecCCCCCceEEEeecccchh----hhhHHHHHHHHHHHhcC
Q 010421 388 EH-PSGLLPLYRGTIHPLIPNMAFVGYIESVSN----LHTAELRSIWLSRLIDD 436 (511)
Q Consensus 388 ~~-~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~----~~~~e~qa~~~a~~l~g 436 (511)
.. .......|+++...+.||+++++....... ....|.+.++++..+..
T Consensus 359 ~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (443)
T COG2072 359 DPWDKDAPLAYKGLALSGGPNLFLIGGPTKASGGLKAALRAELRITLLADAIAH 412 (443)
T ss_pred ccccccccceeccccccCCCceEEecCccCCcccchhHHhhhhhhhHHHHHHHh
Confidence 11 112344688888899999999975543221 24677788888777654
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=239.86 Aligned_cols=190 Identities=37% Similarity=0.605 Sum_probs=134.2
Q ss_pred EEECCCHHHHHHHHhc--cCCC-cEEEcCCCCcCccccCCCcCceeccCCCCcc---ccCCCCCCC------C-CCCCCC
Q 010421 8 AIIGAGVSGLAAVKQL--RHHN-PVVFEASDSIGGIWKSCSYNSTKLQSHRSDY---EFTDFPWPN------R-DDPGFP 74 (511)
Q Consensus 8 ~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~---~~~~~~~~~------~-~~~~~~ 74 (511)
+||||||+||++|.+| .|.+ ++|||+++.+||.|.. .++..++..|.... .++++.... + ....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR-YYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC-H-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE-eCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999 8998 9999999999999996 55555554444332 222221110 0 035678
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+++++.+|++.+++++++ .++++++|+++++. ++.|+|+++++. ++.||+||+|||.
T Consensus 80 ~~~~v~~yl~~~~~~~~l--~i~~~~~V~~v~~~----------------~~~w~v~~~~~~-----~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGL--EIRFNTRVESVRRD----------------GDGWTVTTRDGR-----TIRADRVVLATGH 136 (203)
T ss_dssp BHHHHHHHHHHHHHHTTG--GEETS--EEEEEEE----------------TTTEEEEETTS------EEEEEEEEE---S
T ss_pred CHHHHHHHHHHHHhhcCc--ccccCCEEEEEEEe----------------ccEEEEEEEecc-----eeeeeeEEEeeec
Confidence 999999999999999999 69999999999994 445999998774 7899999999999
Q ss_pred cCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 155 YGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 155 ~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
. +.|+.|.++ | ..+. ..+|+.++.+ +..+++|+|+|||+|.||+|+|..|++.+. +|++++|+
T Consensus 137 ~-~~p~~p~~~---g-~~~~-~~~h~~~~~~------~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~-----~V~~~~R~ 199 (203)
T PF13738_consen 137 Y-SHPRIPDIP---G-SAFR-PIIHSADWRD------PEDFKGKRVVVVGGGNSAVDIAYALAKAGK-----SVTLVTRS 199 (203)
T ss_dssp S-CSB---S-T---T-GGCS-EEEEGGG-ST------TGGCTTSEEEEE--SHHHHHHHHHHTTTCS-----EEEEEESS
T ss_pred c-CCCCccccc---c-cccc-ceEehhhcCC------hhhcCCCcEEEEcChHHHHHHHHHHHhhCC-----EEEEEecC
Confidence 8 589999998 6 2233 7899999876 356889999999999999999999998874 59999999
Q ss_pred Ccee
Q 010421 235 THWT 238 (511)
Q Consensus 235 ~~~~ 238 (511)
|.|+
T Consensus 200 ~~~~ 203 (203)
T PF13738_consen 200 PIWY 203 (203)
T ss_dssp ----
T ss_pred CCCC
Confidence 9885
|
... |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=239.31 Aligned_cols=282 Identities=21% Similarity=0.289 Sum_probs=195.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
+||+|||||++|+++|..| .|++|+|+|+++ .||.|.... ....++.+ .....+.++..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~-------~~~~~~~~~~~~ 62 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF-------PEGISGPELMEK 62 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC-------CCCCChHHHHHH
Confidence 5899999999999999999 899999999975 777765411 00111111 122356789999
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP 162 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p 162 (511)
++.+++++++ .+++ ++|+++++. ++.|.|.+.++. ++.||+||+|||. .|+.|
T Consensus 63 l~~~~~~~gv--~~~~-~~v~~v~~~----------------~~~~~v~~~~~~-----~~~~d~liiAtG~---~~~~~ 115 (300)
T TIGR01292 63 MKEQAVKFGA--EIIY-EEVIKVDLS----------------DRPFKVKTGDGK-----EYTAKAVIIATGA---SARKL 115 (300)
T ss_pred HHHHHHHcCC--eEEE-EEEEEEEec----------------CCeeEEEeCCCC-----EEEeCEEEECCCC---CcccC
Confidence 9999999998 7777 899999873 456777765543 7999999999994 57777
Q ss_pred CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 163 AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 163 ~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
.+| |.+.|.+..+|...+.. .....+++|+|||+|.+|+|+|..|++.+. +|+++.|++.+..
T Consensus 116 ~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~-----~V~~v~~~~~~~~--- 178 (300)
T TIGR01292 116 GIP---GEDEFLGRGVSYCATCD------GPFFKNKEVAVVGGGDSAIEEALYLTRIAK-----KVTLVHRRDKFRA--- 178 (300)
T ss_pred CCC---ChhhcCCccEEEeeecC------hhhcCCCEEEEECCChHHHHHHHHHHhhcC-----EEEEEEeCcccCc---
Confidence 788 66656555555443332 234578999999999999999999988764 4999999764210
Q ss_pred ccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccccc
Q 010421 243 RIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIM 322 (511)
Q Consensus 243 ~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~ 322 (511)
.
T Consensus 179 ~------------------------------------------------------------------------------- 179 (300)
T TIGR01292 179 E------------------------------------------------------------------------------- 179 (300)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCchhhhhccC-eEEEEeCc-eeEEeCCc----EEEc---CC--ceeeccEEEEecCCCCcccccccCCCcccccccCCC
Q 010421 323 PEGFFSEAEKG-KIVFKRAS-KWWFWKGG----LEFE---DN--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPS 391 (511)
Q Consensus 323 ~~~~~~~l~~g-~v~v~~~~-i~~~~~~~----v~~~---dG--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
+.+.+.+++. +|+++.+. +.++++++ +++. +| .++++|.||+|||++++..+.+.+ +..+++
T Consensus 180 -~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~------~~~~~~ 252 (300)
T TIGR01292 180 -KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL------LELDEG 252 (300)
T ss_pred -HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh------heecCC
Confidence 0001122232 56666553 66666543 4443 24 458999999999999987654321 111334
Q ss_pred CcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHhc
Q 010421 392 GLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 392 ~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l~ 435 (511)
+.+.+... ..++.||+|++|.... ......+..|++.+|..+.
T Consensus 253 g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 253 GYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred CcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 45555555 4468999999998775 3446678889999888765
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=227.03 Aligned_cols=269 Identities=18% Similarity=0.327 Sum_probs=185.2
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
+..+||+||||||+||+||..| .|+++++||+ ...||.+.... . +.++ |. .....+.+++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~~~----------~---~~~~--~~--~~~~~~~~~~ 65 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTT----------E---VENW--PG--DPNDLTGPLL 65 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceecCc----------e---ECCC--CC--CCCCCCHHHH
Confidence 3568999999999999999999 8899999996 46788665410 0 1111 11 1234567788
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+++..+++.++. .++++ +|..|+.. ++.|+++...+ .+.||+||+|||. .|
T Consensus 66 ~~~~~~~~~~~~~--~~~~~-~v~~v~~~----------------~~~~~v~~~~~------~~~~d~vilAtG~---~~ 117 (321)
T PRK10262 66 MERMHEHATKFET--EIIFD-HINKVDLQ----------------NRPFRLTGDSG------EYTCDALIIATGA---SA 117 (321)
T ss_pred HHHHHHHHHHCCC--EEEee-EEEEEEec----------------CCeEEEEecCC------EEEECEEEECCCC---CC
Confidence 9999999998886 56664 67777762 45576654321 6899999999994 57
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
+.|++| |.+.|.++.+|...+.. .....+++|+|||+|.+|+|+|..|++.+.+ |+++.|++.+
T Consensus 118 ~~~~i~---g~~~~~~~~v~~~~~~~------~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~-----Vtlv~~~~~~-- 181 (321)
T PRK10262 118 RYLGLP---SEEAFKGRGVSACATCD------GFFYRNQKVAVIGGGNTAVEEALYLSNIASE-----VHLIHRRDGF-- 181 (321)
T ss_pred CCCCCC---CHHHcCCCcEEEeecCC------HHHcCCCEEEEECCCHHHHHHHHHHHhhCCE-----EEEEEECCcc--
Confidence 888888 77777777777766644 2346799999999999999999999988654 9999998642
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
+... .
T Consensus 182 ~~~~--------~------------------------------------------------------------------- 186 (321)
T PRK10262 182 RAEK--------I------------------------------------------------------------------- 186 (321)
T ss_pred CCCH--------H-------------------------------------------------------------------
Confidence 1000 0
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEEcCC------ceeeccEEEEecCCCCcccccccCCCcccccc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEFEDN------TKLEADVVILCTGYDGKKKLKAFLPEPFQSLL 387 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~~dG------~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~ 387 (511)
..+.+.+.+++.+|+++.+. +.+++++ +|+++++ +++++|.||+|+|++++..+.+. .+ .
T Consensus 187 --~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~---~l-~-- 258 (321)
T PRK10262 187 --LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG---QL-E-- 258 (321)
T ss_pred --HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc---cc-c--
Confidence 00011234667788888765 7788765 3666543 35999999999999999765431 11 0
Q ss_pred cCCCCcccceee----ecCCCCCceEEEeeccc
Q 010421 388 EHPSGLLPLYRG----TIHPLIPNMAFVGYIES 416 (511)
Q Consensus 388 ~~~~~~~~ly~~----~~~~~~pnl~~iG~~~~ 416 (511)
..++.+.+..+ ...++.||+|++|....
T Consensus 259 -~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~ 290 (321)
T PRK10262 259 -LENGYIKVQSGIHGNATQTSIPGVFAAGDVMD 290 (321)
T ss_pred -ccCCEEEECCCCcccccccCCCCEEECeeccC
Confidence 11122222221 23578999999998764
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=233.74 Aligned_cols=293 Identities=16% Similarity=0.187 Sum_probs=186.9
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++|+|||||++|+.+|.+| .+.+|+|+|+++.++ |..+. +|...........+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-------~~~~~--------------lp~~~~~~~~~~~~~~ 60 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FANCA--------------LPYYIGEVVEDRKYAL 60 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-------cccCC--------------cchhhcCccCCHHHcc
Confidence 4899999999999999999 468999999987652 11100 0100001111122222
Q ss_pred HH-HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 81 DY-LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 81 ~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+ .+.+.++.++ .++++++|++|+.. +. +|.+.++.+++..++.||+||+||| +.|
T Consensus 61 ~~~~~~~~~~~~i--~v~~~~~V~~Id~~----------------~~--~v~~~~~~~~~~~~~~yd~lviAtG---s~~ 117 (438)
T PRK13512 61 AYTPEKFYDRKQI--TVKTYHEVIAINDE----------------RQ--TVTVLNRKTNEQFEESYDKLILSPG---ASA 117 (438)
T ss_pred cCCHHHHHHhCCC--EEEeCCEEEEEECC----------------CC--EEEEEECCCCcEEeeecCEEEECCC---CCC
Confidence 22 1334456677 78888999999873 11 4666665433444578999999999 456
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhh-hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEA-ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
+.|.++ +.. ++...++.+..... ......+++|+|||+|.+|+|+|..|++.+.+ ||++.|++. +
T Consensus 118 ~~~~~~---~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~-----Vtli~~~~~-l 183 (438)
T PRK13512 118 NSLGFE---SDI-----TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLH-----PTLIHRSDK-I 183 (438)
T ss_pred CCCCCC---CCC-----eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCc-----EEEEecccc-c
Confidence 766554 221 22222221110000 00123468999999999999999999988754 999999875 2
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
++..+ . .
T Consensus 184 ~~~~d-------~----~-------------------------------------------------------------- 190 (438)
T PRK13512 184 NKLMD-------A----D-------------------------------------------------------------- 190 (438)
T ss_pred chhcC-------H----H--------------------------------------------------------------
Confidence 23211 0 0
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccce
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLY 397 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly 397 (511)
+.+.+.+.+++.+|+++.+. +.++++..|++++|+++++|.||+|||++++..+++.. ++..++++.+.+.
T Consensus 191 ---~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~-----gl~~~~~G~i~Vd 262 (438)
T PRK13512 191 ---MNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESS-----NIKLDDKGFIPVN 262 (438)
T ss_pred ---HHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhc-----CcccCCCCcEEEC
Confidence 00111234556678888765 88888888999999999999999999999997653311 1112334445555
Q ss_pred eeecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCC
Q 010421 398 RGTIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 398 ~~~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 437 (511)
..+ .++.||+|++|..... ...+.+..||+.+|..+.|.
T Consensus 263 ~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 263 DKF-ETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred CCc-ccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 543 3578999999976531 12345788999999999874
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=226.23 Aligned_cols=301 Identities=20% Similarity=0.234 Sum_probs=197.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
++++|||||||++|+.+|+.| . +.+|+++|+++.. .+.. +-........+..+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h-------l~~p----------------lL~eva~g~l~~~~ 58 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH-------LFTP----------------LLYEVATGTLSESE 58 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc-------ccch----------------hhhhhhcCCCChhh
Confidence 467999999999999999999 3 3789999998654 1111 11111122333445
Q ss_pred HHHHHHHHHHhcCCCCceEe-eeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC
Q 010421 79 ILDYLESYAKHFDVFKCVRF-NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~ 157 (511)
+.--++..+++.+ .+.| ..+|++|+.. ++ +|++.+.. .+.||+||+|+| +
T Consensus 59 i~~p~~~~~~~~~---~v~~~~~~V~~ID~~--~k----------------~V~~~~~~-----~i~YD~LVvalG---s 109 (405)
T COG1252 59 IAIPLRALLRKSG---NVQFVQGEVTDIDRD--AK----------------KVTLADLG-----EISYDYLVVALG---S 109 (405)
T ss_pred eeccHHHHhcccC---ceEEEEEEEEEEccc--CC----------------EEEeCCCc-----cccccEEEEecC---C
Confidence 5555555555443 2333 4589999983 21 58887743 799999999999 5
Q ss_pred CCCCCCCCCCCCCCcccceEEecccc---Cc-cch--hhhhhcc---CCCcEEEECCCCCHHHHHHHHHHhcCC------
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDY---CK-LDK--EAASQLL---KDKKVAVVGFKKSAIDLAKECAESNQG------ 222 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~---~~-~~~--~~~~~~~---~~k~V~VvG~G~sg~d~a~~l~~~~~~------ 222 (511)
.++.+++| |...+.-.+-...+- +. +.. +...... .--.|+|+|||+||+|+|.+|++....
T Consensus 110 ~~~~fgi~---G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~ 186 (405)
T COG1252 110 ETNYFGIP---GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFR 186 (405)
T ss_pred cCCcCCCC---CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhc
Confidence 67888888 644332111111111 00 000 0000011 112699999999999999999976431
Q ss_pred --CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcc
Q 010421 223 --PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLL 300 (511)
Q Consensus 223 --~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
+..-+|+++.+.|. ++|... .+.+
T Consensus 187 ~~~~~~~V~LVea~p~-ILp~~~-----------~~l~------------------------------------------ 212 (405)
T COG1252 187 VDPSELRVILVEAGPR-ILPMFP-----------PKLS------------------------------------------ 212 (405)
T ss_pred CCccccEEEEEccCch-hccCCC-----------HHHH------------------------------------------
Confidence 11126889988876 555543 1100
Q ss_pred cCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCce-eeccEEEEecCCCCccccccc
Q 010421 301 KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTK-LEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 301 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~-~~~D~VI~aTG~~~~~~~~~~ 378 (511)
+...+.+++-+|++..+. |+++++++|++++|.+ +++|.||||+|.+++....++
T Consensus 213 -----------------------~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 213 -----------------------KYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred -----------------------HHHHHHHHHCCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 011135677789999886 9999999999999995 999999999999998643321
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-------chhhhhHHHHHHHHHHHhcCCCCC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-------VSNLHTAELRSIWLSRLIDDKFKL 440 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-------~~~~~~~e~qa~~~a~~l~g~~~l 440 (511)
.+...+..+.+.+...+..+++||+|++|.+.. +.+.+.|+.|++++|++|..+...
T Consensus 270 -----~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 270 -----SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred -----ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 111114456677888888999999999996542 234578999999999988665543
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=234.22 Aligned_cols=279 Identities=15% Similarity=0.137 Sum_probs=192.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+||||||+|++||.+| .|++++|+++. +||+|.. .+ ....++ ...+..+.++.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~-~~------------~~~~~~-----~~~~~~~~~l~~ 270 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLD-TM------------GIENFI-----SVPETEGPKLAA 270 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeec-cC------------cccccC-----CCCCCCHHHHHH
Confidence 47999999999999999999 99999999874 8998864 11 000010 112346788999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++...++++++ .++++++|+++++. ++.|.|.+.++. .+.||.||+|||. .|+.
T Consensus 271 ~l~~~~~~~gv--~i~~~~~V~~I~~~----------------~~~~~V~~~~g~-----~i~a~~vViAtG~---~~r~ 324 (517)
T PRK15317 271 ALEEHVKEYDV--DIMNLQRASKLEPA----------------AGLIEVELANGA-----VLKAKTVILATGA---RWRN 324 (517)
T ss_pred HHHHHHHHCCC--EEEcCCEEEEEEec----------------CCeEEEEECCCC-----EEEcCEEEECCCC---CcCC
Confidence 99999999998 78889999999872 456788775553 7899999999995 5677
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|++| |.+.|.+..+|.....+ ...+.+|+|+|||+|.+|+|+|..|+..+. +|+++.|.+... +
T Consensus 325 ~~ip---G~~~~~~~~v~~~~~~~------~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~-----~Vtlv~~~~~l~-~- 388 (517)
T PRK15317 325 MNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVK-----HVTVLEFAPELK-A- 388 (517)
T ss_pred CCCC---CHHHhcCceEEEeeccC------chhcCCCEEEEECCCHHHHHHHHHHHhcCC-----EEEEEEECcccc-c-
Confidence 8888 76667666666554332 234678999999999999999999998765 499999876421 0
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
. .
T Consensus 389 -~-------~---------------------------------------------------------------------- 390 (517)
T PRK15317 389 -D-------Q---------------------------------------------------------------------- 390 (517)
T ss_pred -c-------H----------------------------------------------------------------------
Confidence 0 0
Q ss_pred cCCchhhhhc-cCeEEEEeCc-eeEEeCC-----cEEEc---CCc--eeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 322 MPEGFFSEAE-KGKIVFKRAS-KWWFWKG-----GLEFE---DNT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 322 ~~~~~~~~l~-~g~v~v~~~~-i~~~~~~-----~v~~~---dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
.+.+.+. ..+|+++.+. +.++.++ +|++. +|+ ++++|.|++|+|++++..+.+.. +..+
T Consensus 391 ---~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~------v~~~ 461 (517)
T PRK15317 391 ---VLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT------VELN 461 (517)
T ss_pred ---HHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh------eeeC
Confidence 0001122 2467777765 6666655 25554 343 48999999999999987654311 1113
Q ss_pred CCCcccceeeecCCCCCceEEEeecccch--hhhhHHHHHHHHHH
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIESVS--NLHTAELRSIWLSR 432 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~~~--~~~~~e~qa~~~a~ 432 (511)
+++.+.+...+ .++.||||++|...... ....+..++.-+|.
T Consensus 462 ~~g~i~vd~~l-~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~ 505 (517)
T PRK15317 462 RRGEIIVDARG-ATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAAL 505 (517)
T ss_pred CCCcEEECcCC-CCCCCCEEECccccCCCCCEEEEhhhhHHHHHH
Confidence 33444444443 36889999999876532 13344455554443
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=230.61 Aligned_cols=302 Identities=19% Similarity=0.206 Sum_probs=186.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-CCcCceeccCCCCcc----c-cCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHRSDY----E-FTDFPWPNRDDPG 72 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~ 72 (511)
|+..+||+||||||+|++||..| .|++|+|+|+. .+||+|.. .+.|...+....... . ...+.+... ..
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~--~~ 77 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT--EN 77 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC--CC
Confidence 66678999999999999999999 89999999995 89998754 123332111000000 0 000111100 00
Q ss_pred CCChHHHHHH-----------HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 73 FPSYTEILDY-----------LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 73 ~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
.....++.++ +....++.++ .+..+ ++..++. .+|++ ++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~v~~--------------------~~v~~-~g~----- 128 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGV--DLIEG-FARFVDA--------------------HTVEV-NGE----- 128 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC--------------------CEEEE-CCE-----
Confidence 1122222222 2233334455 44443 3443332 24666 332
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
.+.||+||+||| ..|..|.+| |.+ .++++.++... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 129 ~~~~d~lViATG---s~p~~p~i~---g~~----~~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~l~~~g~ 191 (450)
T PRK06116 129 RYTADHILIATG---GRPSIPDIP---GAE----YGITSDGFFAL-------EELPKRVAVVGAGYIAVEFAGVLNGLGS 191 (450)
T ss_pred EEEeCEEEEecC---CCCCCCCCC---Ccc----eeEchhHhhCc-------cccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 789999999999 468888888 654 24454444331 1346899999999999999999998875
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ |+++.|.+.. ++... . .
T Consensus 192 ~-----Vtlv~~~~~~-l~~~~-------~----~--------------------------------------------- 209 (450)
T PRK06116 192 E-----THLFVRGDAP-LRGFD-------P----D--------------------------------------------- 209 (450)
T ss_pred e-----EEEEecCCCC-ccccC-------H----H---------------------------------------------
Confidence 4 9999997742 22211 0 0
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc---EEEcCCceeeccEEEEecCCCCcccc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG---LEFEDNTKLEADVVILCTGYDGKKKL 375 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~---v~~~dG~~~~~D~VI~aTG~~~~~~~ 375 (511)
+...+.+.+++.+|+++.+. +.+++. ++ |.+.+|+++++|.||+|||++++...
T Consensus 210 --------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 210 --------------------IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred --------------------HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 00111233455667777764 677753 33 56678988999999999999998763
Q ss_pred cccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 376 KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+.. .-.++..+.++.+.+..++ .++.||+|++|.... ....+.|..|++.+|..+.|.
T Consensus 270 l~l---~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 270 LGL---ENAGVKLNEKGYIIVDEYQ-NTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred CCc---hhcCceECCCCcEecCCCC-CcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 211 1011111334445555443 367899999998764 334568999999999998774
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=229.00 Aligned_cols=307 Identities=14% Similarity=0.131 Sum_probs=189.1
Q ss_pred CCC-CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc-------ccCCCCCCCCC
Q 010421 1 MAN-YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY-------EFTDFPWPNRD 69 (511)
Q Consensus 1 m~~-~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~ 69 (511)
|++ .+||+||||||+|+.+|..| .|.+|+|+|+++.+||+|... ..|...+......+ .|..++.
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~---- 76 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRV---- 76 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCC----
Confidence 443 68999999999999999999 899999999988999998552 33332221111100 1111111
Q ss_pred CCCCCChHHHHHHH-----------HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCC
Q 010421 70 DPGFPSYTEILDYL-----------ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSN 138 (511)
Q Consensus 70 ~~~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 138 (511)
....+..++.++. ....++.++ .++.+ ++..++ .+.++|...++
T Consensus 77 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~~------------------~~~~~v~~~~g--- 131 (461)
T PRK05249 77 -KLRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQG-RARFVD------------------PHTVEVECPDG--- 131 (461)
T ss_pred -cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEec------------------CCEEEEEeCCC---
Confidence 1122344444443 333344444 44433 333332 23344443322
Q ss_pred ceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHH
Q 010421 139 SIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAE 218 (511)
Q Consensus 139 ~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~ 218 (511)
...++.||+||+||| +.|..|.++ +.+. ..++++.+.... ...+++|+|||+|.+|+|+|..+++
T Consensus 132 ~~~~~~~d~lviATG---s~p~~p~~~---~~~~--~~v~~~~~~~~~-------~~~~~~v~IiGgG~~g~E~A~~l~~ 196 (461)
T PRK05249 132 EVETLTADKIVIATG---SRPYRPPDV---DFDH--PRIYDSDSILSL-------DHLPRSLIIYGAGVIGCEYASIFAA 196 (461)
T ss_pred ceEEEEcCEEEEcCC---CCCCCCCCC---CCCC--CeEEcHHHhhch-------hhcCCeEEEECCCHHHHHHHHHHHH
Confidence 233689999999999 467777665 3221 135555444432 2357999999999999999999998
Q ss_pred hcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCC
Q 010421 219 SNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLP 298 (511)
Q Consensus 219 ~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
.+.+ |+++.|++. ++|..+ . .
T Consensus 197 ~g~~-----Vtli~~~~~-~l~~~d-------~----~------------------------------------------ 217 (461)
T PRK05249 197 LGVK-----VTLINTRDR-LLSFLD-------D----E------------------------------------------ 217 (461)
T ss_pred cCCe-----EEEEecCCC-cCCcCC-------H----H------------------------------------------
Confidence 8765 999999875 333221 0 0
Q ss_pred cccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCc--EEEcCCceeeccEEEEecCCCCcc
Q 010421 299 LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGG--LEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 299 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
+.+.+.+.+++.+|+++.+. +.+++ +++ +++++|+++++|.||+|+|++++.
T Consensus 218 -----------------------~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 218 -----------------------ISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred -----------------------HHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 00011123445567777664 66665 333 446688889999999999999997
Q ss_pred cccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 374 KLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.++.. ...++..++.+.+.+..++ .++.||+|++|.... +.....|..|++.+|..+.|.
T Consensus 275 ~~l~l---~~~g~~~~~~G~i~vd~~~-~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 275 DGLNL---ENAGLEADSRGQLKVNENY-QTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred cCCCc---hhhCcEecCCCcEeeCCCc-ccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 64211 1111111333444444433 357899999998764 334568999999999999875
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=228.80 Aligned_cols=300 Identities=19% Similarity=0.225 Sum_probs=181.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPS 75 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (511)
+.+||+||||||+|+.||..+ .|.+|+|+|+ ..+||+|... ..|...+......+. ...+.++... .....
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~~~~ 78 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNL-ENTFN 78 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCC-cCccC
Confidence 468999999999999999999 8999999999 5799987641 333321111111100 1111111110 00112
Q ss_pred hHHHHHH-----------HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 76 YTEILDY-----------LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 76 ~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
..++.++ +....++.++ .+..++.+. .+ +. +|.+ ++. .+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~~-~~------------------~~--~v~v-~~~-----~~~ 129 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHARF-TK------------------DG--TVEV-NGR-----DYT 129 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-cc------------------CC--EEEE-CCE-----EEE
Confidence 2333333 2233334444 455554321 11 11 3544 221 689
Q ss_pred eCEEEEeecccCCCCCCC-CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCC
Q 010421 145 FEFLVVCTGKYGDVPIIP-AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGP 223 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p-~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 223 (511)
||+||+||| +.|..| .+| |.+. .+++.++..+. ..+++|+|||+|.+|+|+|..|+..+.+
T Consensus 130 ~d~vIiAtG---s~p~~p~~i~---g~~~----~~~~~~~~~~~-------~~~~~vvIIGgG~iG~E~A~~l~~~g~~- 191 (450)
T TIGR01421 130 APHILIATG---GKPSFPENIP---GAEL----GTDSDGFFALE-------ELPKRVVIVGAGYIAVELAGVLHGLGSE- 191 (450)
T ss_pred eCEEEEecC---CCCCCCCCCC---CCce----eEcHHHhhCcc-------ccCCeEEEECCCHHHHHHHHHHHHcCCc-
Confidence 999999999 467888 788 6542 23333333221 2468999999999999999999988765
Q ss_pred CCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCC
Q 010421 224 EGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYG 303 (511)
Q Consensus 224 ~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (511)
||++.|.+.. ++..+ ..+
T Consensus 192 ----Vtli~~~~~i-l~~~d-------~~~-------------------------------------------------- 209 (450)
T TIGR01421 192 ----THLVIRHERV-LRSFD-------SMI-------------------------------------------------- 209 (450)
T ss_pred ----EEEEecCCCC-CcccC-------HHH--------------------------------------------------
Confidence 9999998752 23221 000
Q ss_pred CCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc---EEEcCC-ceeeccEEEEecCCCCccccc
Q 010421 304 LKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG---LEFEDN-TKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 304 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~---v~~~dG-~~~~~D~VI~aTG~~~~~~~~ 376 (511)
.+.+.+.+++.+|+++.+. +.+++. ++ +++++| +++++|.||+|+|++|+..++
T Consensus 210 -------------------~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l 270 (450)
T TIGR01421 210 -------------------SETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGL 270 (450)
T ss_pred -------------------HHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccC
Confidence 0011123445567777764 666653 22 567788 569999999999999997642
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g 436 (511)
.+ .-.++..+.++.+.+... ..++.||+|++|.... ....+.|..|++.+|..+.+
T Consensus 271 ~l---~~~g~~~~~~G~i~vd~~-~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 271 GL---ENVGIKLNEKGQIIVDEY-QNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred Cc---cccCcEECCCCcEEeCCC-CcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 11 111111133344444444 3467899999998654 33467899999999998875
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-26 Score=221.39 Aligned_cols=229 Identities=24% Similarity=0.318 Sum_probs=136.8
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCcCccccCC-CcCceeccCCC-----------CccccCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHR-----------SDYEFTDFPWPNR 68 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~ 68 (511)
.+|+++||.||++|+.|..| ...++..||+.+.+ .|+.. ..++.++++|. .-|+|..+-....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 47999999999999999999 56899999998766 68763 24666665542 2222211100000
Q ss_pred -------CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 69 -------DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 69 -------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
....+|++.++.+|+++++++++. .++|+++|++|++..+. +...|+|.+++ .++...
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~------------~~~~~~V~~~~-~~g~~~ 144 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDG------------DEDLFRVTTRD-SDGDGE 144 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEET------------TEEEEEEEEEE-TTS-EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCC------------CccEEEEEEee-cCCCee
Confidence 035678999999999999999985 69999999999995210 01368999876 335556
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
.+.++.||+||| ..|.+|.+. ........++|+++|.... ....++++|+|||||.||+|++..|.+.+.
T Consensus 145 ~~~ar~vVla~G---~~P~iP~~~---~~~~~~~~v~Hss~~~~~~----~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~ 214 (341)
T PF13434_consen 145 TYRARNVVLATG---GQPRIPEWF---QDLPGSPRVFHSSEYLSRI----DQSLAGKRVAVVGGGQSAAEIFLDLLRRGP 214 (341)
T ss_dssp EEEESEEEE-------EE---GGG---GGGTT-TTEEEGGGHHHHH----T-----EEEEEE-SSHHHHHHHHHHHHH-T
T ss_pred EEEeCeEEECcC---CCCCCCcch---hhcCCCCCEEEehHhhhcc----ccccCCCeEEEECCcHhHHHHHHHHHhCCC
Confidence 899999999999 578988754 1111236799999986522 235688999999999999999999999865
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccch-hhhhhhhhhhhcCCCc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFF-MFYSTRFSQFLHGSPN 266 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~-~~~~~r~~~~~~~~~~ 266 (511)
. .+|+++.|++. +.|... .|+. +.+.....+.+...|.
T Consensus 215 ~---~~V~~i~R~~~-~~~~d~---s~f~ne~f~P~~v~~f~~l~~ 253 (341)
T PF13434_consen 215 E---AKVTWISRSPG-FFPMDD---SPFVNEIFSPEYVDYFYSLPD 253 (341)
T ss_dssp T---EEEEEEESSSS--EB-------CCHHGGGSHHHHHHHHTS-H
T ss_pred C---cEEEEEECCCc-cCCCcc---ccchhhhcCchhhhhhhcCCH
Confidence 2 46999999985 445443 3432 2334445555555543
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=227.49 Aligned_cols=307 Identities=19% Similarity=0.201 Sum_probs=195.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc-cC----CCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE-FT----DFPWPNRDDPG 72 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~ 72 (511)
|.+.+|++|||+||+|..+|.++ .|.+++++|+...+||++..- +.|.-.+-.....+. +. .+.+... ..
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~--~~ 78 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE--VP 78 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecC--CC
Confidence 55679999999999999999999 888899999987999998751 333322211111111 00 1111110 00
Q ss_pred CCChHHHHHHHHHH-----------HHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 73 FPSYTEILDYLESY-----------AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 73 ~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
-....++.+..+.. .+..++ .+..+ +. +. .+..+|.+... ..+
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V--~vi~G-~a---~f-----------------~~~~~v~V~~~---~~~ 132 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGV--DVIRG-EA---RF-----------------VDPHTVEVTGE---DKE 132 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCC--EEEEE-EE---EE-----------------CCCCEEEEcCC---Cce
Confidence 12333344333332 222333 22221 11 11 11225666553 123
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
++.+|++||||| +.|..|+++ +.+.. .++.+.+...+ . ..+++++|||+|.+|+|+|..+++.+.
T Consensus 133 ~~~a~~iiIATG---S~p~~~~~~---~~~~~--~~~~s~~~l~~------~-~lP~~lvIiGgG~IGlE~a~~~~~LG~ 197 (454)
T COG1249 133 TITADNIIIATG---SRPRIPPGP---GIDGA--RILDSSDALFL------L-ELPKSLVIVGGGYIGLEFASVFAALGS 197 (454)
T ss_pred EEEeCEEEEcCC---CCCcCCCCC---CCCCC--eEEechhhccc------c-cCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 899999999999 578888877 43321 24444443221 1 467899999999999999999999987
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ ||++.|.+. ++|..+ .
T Consensus 198 ~-----VTiie~~~~-iLp~~D-----------~---------------------------------------------- 214 (454)
T COG1249 198 K-----VTVVERGDR-ILPGED-----------P---------------------------------------------- 214 (454)
T ss_pred c-----EEEEecCCC-CCCcCC-----------H----------------------------------------------
Confidence 6 999999886 555443 0
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEcCCc--eeeccEEEEecCCCCccc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFEDNT--KLEADVVILCTGYDGKKK 374 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~dG~--~~~~D~VI~aTG~~~~~~ 374 (511)
.+++.+.+.++++++++..+. +.+++.+. +.+++|+ ++++|.|++|||.+|+..
T Consensus 215 -------------------ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 215 -------------------EISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred -------------------HHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 111122234556677887776 55554432 6677877 689999999999999975
Q ss_pred ccccCCCcccccccCCCCcccceeeecCCCCCceEEEeec-ccchhhhhHHHHHHHHHHHhcC
Q 010421 375 LKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYI-ESVSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~-~~~~~~~~~e~qa~~~a~~l~g 436 (511)
- |+.+-.++..+.++.+.+. ....++.||+|++|.. ......+.+..|++.+|..+.|
T Consensus 276 ~---LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 276 G---LGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred C---CChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 2 2222122222455566666 5556779999999988 4445668999999999999886
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=226.49 Aligned_cols=305 Identities=18% Similarity=0.174 Sum_probs=183.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-CCcCceeccCCCCcccc----CCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHRSDYEF----TDFPWPNRDDPGFPS 75 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 75 (511)
..+||+||||||+|++||..| .|.+|+|+|+.. +||+|.. ...|+..+......+.+ ..+.+... .....
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~--~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE--NVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC--CCccC
Confidence 458999999999999999999 899999999976 9998754 23444332222222111 11111110 12235
Q ss_pred hHHHHHHHHHHHH-----------hcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 76 YTEILDYLESYAK-----------HFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 76 ~~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
..++.+|.+.+.+ +.++ .+..+ +++.++. . ++++...+++ .++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~~~~------------------~--~~~v~~~~~~--~~~~ 134 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIRG-EAKLVDP------------------N--TVRVMTEDGE--QTYT 134 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC------------------C--EEEEecCCCc--EEEE
Confidence 5666677544433 3344 34433 3333322 2 2444321111 2789
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCC
Q 010421 145 FEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPE 224 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 224 (511)
||+||+|||. .|..| | |.+.....++++.+...+ ...+++|+|||+|.+|+|+|..+++.+.+
T Consensus 135 ~d~lViAtGs---~p~~~--p---g~~~~~~~v~~~~~~~~~-------~~~~~~vvVvGgG~~g~E~A~~l~~~g~~-- 197 (462)
T PRK06416 135 AKNIILATGS---RPREL--P---GIEIDGRVIWTSDEALNL-------DEVPKSLVVIGGGYIGVEFASAYASLGAE-- 197 (462)
T ss_pred eCEEEEeCCC---CCCCC--C---CCCCCCCeEEcchHhhCc-------cccCCeEEEECCCHHHHHHHHHHHHcCCe--
Confidence 9999999995 45543 3 433211124444433321 13468999999999999999999987654
Q ss_pred CCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCC
Q 010421 225 GQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304 (511)
Q Consensus 225 ~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (511)
||++.|.+. ++|... ...
T Consensus 198 ---Vtli~~~~~-~l~~~~-----------~~~----------------------------------------------- 215 (462)
T PRK06416 198 ---VTIVEALPR-ILPGED-----------KEI----------------------------------------------- 215 (462)
T ss_pred ---EEEEEcCCC-cCCcCC-----------HHH-----------------------------------------------
Confidence 999999875 333321 000
Q ss_pred CCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcCC---ceeeccEEEEecCCCCccccc
Q 010421 305 KPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFEDN---TKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 305 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~dG---~~~~~D~VI~aTG~~~~~~~~ 376 (511)
.+.+.+.+++.+|+++.+. +.+++++ + +.+++| +++++|.||+|||.+++..+.
T Consensus 216 ------------------~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l 277 (462)
T PRK06416 216 ------------------SKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENL 277 (462)
T ss_pred ------------------HHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCC
Confidence 0011123445567877774 7777643 3 345565 669999999999999987642
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
. ..-.++..+ ++.+.+..++ .++.||+|++|.... +.....+..|++.+|..+.|.
T Consensus 278 ~---l~~~gl~~~-~g~i~vd~~~-~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (462)
T PRK06416 278 G---LEELGVKTD-RGFIEVDEQL-RTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGN 334 (462)
T ss_pred C---chhcCCeec-CCEEeECCCC-ccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCC
Confidence 1 010111112 3334343333 367899999998764 334578999999999999874
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=228.39 Aligned_cols=306 Identities=16% Similarity=0.147 Sum_probs=185.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcC---------CCCcCccccC-CCcCceeccCCCCcc----ccCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA---------SDSIGGIWKS-CSYNSTKLQSHRSDY----EFTDFPWPN 67 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~---------~~~~GG~w~~-~~~~~~~~~~~~~~~----~~~~~~~~~ 67 (511)
.+||+||||||+|+.+|..+ .|.+|+|+|+ .+.+||+|.. .++|.-.+......+ ....+.+..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 37999999999999999999 8999999996 3679999855 234443321111110 001111110
Q ss_pred CCCCCCCChHHHHHHHHHHHH-----------hcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC
Q 010421 68 RDDPGFPSYTEILDYLESYAK-----------HFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN 136 (511)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (511)
. ...-....++.++.....+ ..++ .+. ..++..++ ...++|+..++
T Consensus 105 ~-~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~i-~g~a~~vd------------------~~~v~V~~~~g- 161 (499)
T PLN02507 105 N-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGV--KLY-EGEGKIVG------------------PNEVEVTQLDG- 161 (499)
T ss_pred C-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEE-EEEEEEec------------------CCEEEEEeCCC-
Confidence 0 0111233444433333322 2233 222 22444333 23345554333
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHH
Q 010421 137 SNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216 (511)
Q Consensus 137 ~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l 216 (511)
+..++.||+|||||| +.|..|.+| |.+. ..++.+...+ ...+++|+|||+|.+|+|+|..+
T Consensus 162 --~~~~~~~d~LIIATG---s~p~~p~ip---G~~~----~~~~~~~~~l-------~~~~k~vvVIGgG~ig~E~A~~l 222 (499)
T PLN02507 162 --TKLRYTAKHILIATG---SRAQRPNIP---GKEL----AITSDEALSL-------EELPKRAVVLGGGYIAVEFASIW 222 (499)
T ss_pred --cEEEEEcCEEEEecC---CCCCCCCCC---Cccc----eechHHhhhh-------hhcCCeEEEECCcHHHHHHHHHH
Confidence 333588999999999 467788888 6432 2233322221 12468999999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhcc
Q 010421 217 AESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWK 296 (511)
Q Consensus 217 ~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
+..+.+ |+++.|.+. +++..+ . . +.
T Consensus 223 ~~~G~~-----Vtli~~~~~-~l~~~d-------~----~----------------------------~~---------- 247 (499)
T PLN02507 223 RGMGAT-----VDLFFRKEL-PLRGFD-------D----E----------------------------MR---------- 247 (499)
T ss_pred HHcCCe-----EEEEEecCC-cCcccC-------H----H----------------------------HH----------
Confidence 888765 999999774 222211 0 0 00
Q ss_pred CCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCC
Q 010421 297 LPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 297 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
..+.+.+++.+|+++.+. +.++++ ++ +.+.+|+++++|.||+|+|+++
T Consensus 248 ---------------------------~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 248 ---------------------------AVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred ---------------------------HHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCC
Confidence 011123445567777764 667653 33 5566888899999999999999
Q ss_pred cccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 372 KKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
+..++.+ .-.++..++++.+.+..++ .++.||+|++|..... ...+.|..|++.++..+.|.
T Consensus 301 n~~~l~l---~~~gl~~~~~G~I~Vd~~~-~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 301 NTKRLNL---EAVGVELDKAGAVKVDEYS-RTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred CCCCCCc---hhhCcEECCCCcEecCCCC-cCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 9764211 1111111334445555444 3688999999987653 34578999999999998764
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=224.10 Aligned_cols=301 Identities=16% Similarity=0.165 Sum_probs=183.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCc----cccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSD----YEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (511)
.+||+||||||+|++||..+ .|++|+|+|+ +.+||++... +.|...+-..... -.+..+.+... ..-...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG--KARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC--CCCcCH
Confidence 48999999999999999999 8999999999 5799987641 3333221111000 01111111100 001112
Q ss_pred H-----------HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 77 T-----------EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 77 ~-----------~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
. ++.++++...++.++ .+..+ ++..++. . ++.+... +. .+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~v~~------------------~--~v~v~~~--g~--~~~~ 131 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGV--ELLEG-RARLVGP------------------N--TVEVLQD--GT--TYTA 131 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEE-EEEEecC------------------C--EEEEecC--Ce--EEEc
Confidence 2 233444555555665 44443 5555543 1 2333221 22 6899
Q ss_pred CEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCC
Q 010421 146 EFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEG 225 (511)
Q Consensus 146 d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 225 (511)
|+||+||| +.|..|++| |.+. .+.+.+...+ ...+++|+|||+|.+|+|+|..+++.+.+
T Consensus 132 d~lIiATG---s~p~~p~i~---G~~~----~~~~~~~~~l-------~~~~~~vvVIGgG~~g~E~A~~l~~~G~~--- 191 (446)
T TIGR01424 132 KKILIAVG---GRPQKPNLP---GHEL----GITSNEAFHL-------PTLPKSILILGGGYIAVEFAGIWRGLGVQ--- 191 (446)
T ss_pred CEEEEecC---CcCCCCCCC---Cccc----eechHHhhcc-------cccCCeEEEECCcHHHHHHHHHHHHcCCe---
Confidence 99999999 568888888 6432 2222222221 12478999999999999999999887754
Q ss_pred CcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCC
Q 010421 226 QPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLK 305 (511)
Q Consensus 226 ~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (511)
|+++.+.+. ++|..+ ...
T Consensus 192 --Vtli~~~~~-~l~~~d-----------~~~------------------------------------------------ 209 (446)
T TIGR01424 192 --VTLIYRGEL-ILRGFD-----------DDM------------------------------------------------ 209 (446)
T ss_pred --EEEEEeCCC-CCcccC-----------HHH------------------------------------------------
Confidence 999998764 222211 000
Q ss_pred CCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCcccccccCC
Q 010421 306 PDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLP 380 (511)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~ 380 (511)
...+.+.+++.+|+++.+. +.+++. ++ |.+.+|+++++|.||+|||++++...+.+
T Consensus 210 -----------------~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l-- 270 (446)
T TIGR01424 210 -----------------RALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGL-- 270 (446)
T ss_pred -----------------HHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCc--
Confidence 0011123445567777764 666653 33 55668888999999999999998653211
Q ss_pred CcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 381 EPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
...++..++++.+.+..++ .++.||+|++|..... ...+.|..|++.++..+.|.
T Consensus 271 -~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 271 -EAAGVELNDAGAIAVDEYS-RTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred -cccCeEECCCCcEEeCCCC-ccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 1111111333444444443 3578999999987753 34568999999999998763
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=225.82 Aligned_cols=300 Identities=15% Similarity=0.188 Sum_probs=186.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
.+++|||||||++|+.+|+.| .+.+|+|||+++.. .|..+ ++.. .......+++.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~-------~~~~~---------------l~~~-~~g~~~~~~~~ 65 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM-------LFTPL---------------LPQT-TTGTLEFRSIC 65 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc-------chhhh---------------HHHh-cccCCChHHhH
Confidence 357999999999999999999 56899999998654 22111 0000 01111233444
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe--CC---CCceeEEEeCEEEEeeccc
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT--HN---SNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~---~~~~~~~~~d~vVlAtG~~ 155 (511)
..++..++.++. .....+|++|+.. +. .|.+.. .. ++...++.||+||+|||
T Consensus 66 ~~~~~~~~~~~~---~~i~~~V~~Id~~----------------~~--~v~~~~~~~~~~~~~~g~~i~yD~LViAtG-- 122 (424)
T PTZ00318 66 EPVRPALAKLPN---RYLRAVVYDVDFE----------------EK--RVKCGVVSKSNNANVNTFSVPYDKLVVAHG-- 122 (424)
T ss_pred HHHHHHhccCCe---EEEEEEEEEEEcC----------------CC--EEEEecccccccccCCceEecCCEEEECCC--
Confidence 445555555554 3456799999873 22 244411 10 01112799999999999
Q ss_pred CCCCCCCCCCCCCCCCcccceEEeccccCccch---h--h----h-------hhccCCCcEEEECCCCCHHHHHHHHHHh
Q 010421 156 GDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDK---E--A----A-------SQLLKDKKVAVVGFKKSAIDLAKECAES 219 (511)
Q Consensus 156 ~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~---~--~----~-------~~~~~~k~V~VvG~G~sg~d~a~~l~~~ 219 (511)
+.|..|.+| |.... .+....+.+... . . . ......++|+|||+|.+|+|+|.+|+..
T Consensus 123 -s~~~~~~ip---G~~e~---~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~ 195 (424)
T PTZ00318 123 -ARPNTFNIP---GVEER---AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADF 195 (424)
T ss_pred -cccCCCCCC---CHHHc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHH
Confidence 467777777 54321 111111110000 0 0 0 0012335899999999999999999863
Q ss_pred cCC---------CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHH
Q 010421 220 NQG---------PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIE 290 (511)
Q Consensus 220 ~~~---------~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (511)
... ....+|+++.+.+. ++|... ..
T Consensus 196 ~~~~~~~~~~~~~~~~~Vtlv~~~~~-ll~~~~-----------~~---------------------------------- 229 (424)
T PTZ00318 196 FRDDVRNLNPELVEECKVTVLEAGSE-VLGSFD-----------QA---------------------------------- 229 (424)
T ss_pred HHHHHHhhhhcccccCEEEEEcCCCc-ccccCC-----------HH----------------------------------
Confidence 100 00246999998765 223221 00
Q ss_pred HHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCC
Q 010421 291 SYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGY 369 (511)
Q Consensus 291 ~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~ 369 (511)
+++...+.+++.+|+++.+. |.++++++|+++||+++++|.||+|+|.
T Consensus 230 -------------------------------~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 230 -------------------------------LRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred -------------------------------HHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCC
Confidence 00111234666778988765 8899999999999999999999999999
Q ss_pred CCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc------chhhhhHHHHHHHHHHHhcCCC
Q 010421 370 DGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES------VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~------~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+++. +...++ +..++++.+.+...+..++.||+|++|.... +.....|..|++++|..|.+.+
T Consensus 279 ~~~~-~~~~~~-----l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 279 GPGP-LTKQLK-----VDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred CCcc-hhhhcC-----CcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 9873 332222 1123445666766666678999999997664 2234678999999998875443
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=207.07 Aligned_cols=262 Identities=20% Similarity=0.276 Sum_probs=185.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
+.+||+||||||+||+||.++ .+++ ++|+|+ ..+||..... . ..-.|+.+ +.-.++.++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~------~----~venypg~-------~~~~~g~~L 63 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKT------T----DVENYPGF-------PGGILGPEL 63 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccc------e----eecCCCCC-------ccCCchHHH
Confidence 468999999999999999999 8888 556655 5666543320 0 00011111 222467888
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
.+-++..+.+++. .+.. .+|.+++. .+ .+.|.+.++ +++++.||+|||. .
T Consensus 64 ~~~~~~~a~~~~~--~~~~-~~v~~v~~-----------------~~~~F~v~t~~~------~~~ak~vIiAtG~---~ 114 (305)
T COG0492 64 MEQMKEQAEKFGV--EIVE-DEVEKVEL-----------------EGGPFKVKTDKG------TYEAKAVIIATGA---G 114 (305)
T ss_pred HHHHHHHHhhcCe--EEEE-EEEEEEee-----------------cCceEEEEECCC------eEEEeEEEECcCC---c
Confidence 8888888888887 5554 67777776 33 677877665 6999999999995 5
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
++.|.+| |...|.|+-+|.+..++ . .+++|+|+|||+|.||+|-|..|++.+.+ ||+++|++..-
T Consensus 115 ~~~~~~~---~e~e~~g~gv~yc~~cd------g-~~~~k~v~ViGgG~sAve~Al~L~~~a~~-----Vtlv~r~~~~r 179 (305)
T COG0492 115 ARKLGVP---GEEEFEGKGVSYCATCD------G-FFKGKDVVVIGGGDSAVEEALYLSKIAKK-----VTLVHRRDEFR 179 (305)
T ss_pred ccCCCCC---cchhhcCCceEEeeecC------c-cccCCeEEEEcCCHHHHHHHHHHHHhcCe-----EEEEecCcccC
Confidence 6777777 65578888888777776 3 58999999999999999999999998765 99999987521
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
+.
T Consensus 180 -a~----------------------------------------------------------------------------- 181 (305)
T COG0492 180 -AE----------------------------------------------------------------------------- 181 (305)
T ss_pred -cC-----------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccCCchhhhhc-cCeEEEEeCc-eeEEeC---CcEEEcCC--c--eeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 319 MAIMPEGFFSEAE-KGKIVFKRAS-KWWFWK---GGLEFEDN--T--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 319 ~~~~~~~~~~~l~-~g~v~v~~~~-i~~~~~---~~v~~~dG--~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+...+.++ ..+|.++.+. +.++.+ .+|++++. + ++.+|-|+.+.|+.|+..+..-+.. .+
T Consensus 182 -----~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~------~~ 250 (305)
T COG0492 182 -----EILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV------LD 250 (305)
T ss_pred -----HHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc------cC
Confidence 00011122 2377877774 888877 46888763 3 4899999999999999765321111 24
Q ss_pred CCCcccceeeecCCCCCceEEEeeccc
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIES 416 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~ 416 (511)
+++.+.+... ..++.|++|++|....
T Consensus 251 ~~g~I~v~~~-~~TsvpGifAaGDv~~ 276 (305)
T COG0492 251 ENGYIVVDEE-METSVPGIFAAGDVAD 276 (305)
T ss_pred CCCcEEcCCC-cccCCCCEEEeEeecc
Confidence 4555545444 5688999999997654
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=227.32 Aligned_cols=284 Identities=20% Similarity=0.252 Sum_probs=187.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
|.+.+||+|||||||||+||..| .+++|+|+|++ .+||.+.. .+ ....+| .....++.+
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~-~~------------~i~~~p-----g~~~~~~~~ 61 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI-TS------------EVVNYP-----GILNTTGPE 61 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe-cc------------ccccCC-----CCcCCCHHH
Confidence 77779999999999999999999 89999999995 68887653 10 000111 012245678
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.++++..++++++ .+ ++++|+.++.. +..+.|.+.++ .+.+++||+|||+ .
T Consensus 62 l~~~l~~~~~~~gv--~~-~~~~V~~i~~~----------------~~~~~V~~~~g------~~~a~~lVlATGa---~ 113 (555)
T TIGR03143 62 LMQEMRQQAQDFGV--KF-LQAEVLDVDFD----------------GDIKTIKTARG------DYKTLAVLIATGA---S 113 (555)
T ss_pred HHHHHHHHHHHcCC--EE-eccEEEEEEec----------------CCEEEEEecCC------EEEEeEEEECCCC---c
Confidence 88999999999887 44 47789888862 33455655433 5789999999994 6
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
|+.|.+| |.+.+.+..+|...... .....+++|+|||+|.+|+|+|..|++.+. +|+++.|.+...
T Consensus 114 p~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~-----~Vtli~~~~~~~ 179 (555)
T TIGR03143 114 PRKLGFP---GEEEFTGRGVAYCATCD------GEFFTGMDVFVIGGGFAAAEEAVFLTRYAS-----KVTVIVREPDFT 179 (555)
T ss_pred cCCCCCC---CHHHhCCceEEEEeecC------hhhcCCCEEEEECCCHHHHHHHHHHHccCC-----EEEEEEeCCccc
Confidence 7888888 76556555555443332 234678999999999999999999987765 499999976421
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
.+. .. .
T Consensus 180 ~~~--------------~~---------------------------~--------------------------------- 185 (555)
T TIGR03143 180 CAK--------------LI---------------------------A--------------------------------- 185 (555)
T ss_pred cCH--------------HH---------------------------H---------------------------------
Confidence 000 00 0
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEE---cCCcee----eccE----EEEecCCCCcccccccCCCc
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEF---EDNTKL----EADV----VILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~---~dG~~~----~~D~----VI~aTG~~~~~~~~~~~~~~ 382 (511)
...+...+|+++.+. |.++.+++ +.+ .+|+.. ++|. ||+|+|++|+..+.+.
T Consensus 186 --------~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~---- 253 (555)
T TIGR03143 186 --------EKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG---- 253 (555)
T ss_pred --------HHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh----
Confidence 011223456766654 66766543 222 356543 3666 9999999999865431
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHh
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLI 434 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l 434 (511)
.+..+.++.+.+... +.++.||+|++|.... ...+..|..|++.+|..+
T Consensus 254 --~l~l~~~G~I~vd~~-~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 254 --VVELDKRGYIPTNED-METNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred --hcccCCCCeEEeCCc-cccCCCCEEEceeccCCCcchheeHHhhHHHHHHHH
Confidence 111123344444433 3457899999998743 222445667777666654
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=221.62 Aligned_cols=286 Identities=18% Similarity=0.230 Sum_probs=182.4
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++|+|||||+||+.+|..| .+.+|+|+++++.. .|....+ + ..+ ......+++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~-------~y~~~~l--~---~~~----------~~~~~~~~~~ 60 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD-------EYNKPDL--S---HVF----------SQGQRADDLT 60 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC-------CcCcCcC--c---HHH----------hCCCCHHHhh
Confidence 6899999999999999999 46789999997643 2211110 0 000 1111233443
Q ss_pred H-HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 81 D-YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 81 ~-yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
. ....+++++++ .++++++|++++.. . ..|.+ ++. .+.||+||+||| ..|
T Consensus 61 ~~~~~~~~~~~gv--~~~~~~~V~~id~~-----------------~-~~v~~-~~~-----~~~yd~LVlATG---~~~ 111 (377)
T PRK04965 61 RQSAGEFAEQFNL--RLFPHTWVTDIDAE-----------------A-QVVKS-QGN-----QWQYDKLVLATG---ASA 111 (377)
T ss_pred cCCHHHHHHhCCC--EEECCCEEEEEECC-----------------C-CEEEE-CCe-----EEeCCEEEECCC---CCC
Confidence 3 24566777888 78889999999872 1 24554 322 789999999999 467
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
..|++| |.+. +++.....+... .......+++|+|||+|.+|+|+|..|++.+.+ |+++.+.+.. +
T Consensus 112 ~~p~i~---G~~~----v~~~~~~~~~~~-~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~-----Vtlv~~~~~~-l 177 (377)
T PRK04965 112 FVPPIP---GREL----MLTLNSQQEYRA-AETQLRDAQRVLVVGGGLIGTELAMDLCRAGKA-----VTLVDNAASL-L 177 (377)
T ss_pred CCCCCC---CCce----EEEECCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe-----EEEEecCCcc-c
Confidence 888888 6542 333222211100 001224678999999999999999999987654 9999997752 2
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
+... + ..
T Consensus 178 ~~~~----~------~~--------------------------------------------------------------- 184 (377)
T PRK04965 178 ASLM----P------PE--------------------------------------------------------------- 184 (377)
T ss_pred chhC----C------HH---------------------------------------------------------------
Confidence 2110 0 00
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
..+.+.+.+++.+|+++.+. +.+++.++ |++.||+++++|.||+|+|++++..+.+..+... .. .+
T Consensus 185 --~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~------~~-gi 255 (377)
T PRK04965 185 --VSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAV------NR-GI 255 (377)
T ss_pred --HHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCc------CC-CE
Confidence 00011123445567777654 67776432 6788999999999999999999876543222111 11 23
Q ss_pred cceeeecCCCCCceEEEeecccc-----hhhhhHHHHHHHHHHHhcCCC
Q 010421 395 PLYRGTIHPLIPNMAFVGYIESV-----SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.+..+ +.++.||+|++|..... ..+..+..|++.+|+.|.|..
T Consensus 256 ~vd~~-l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 256 VVDSY-LQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred EECCC-cccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 33333 23568999999976532 234558899999999998853
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=226.60 Aligned_cols=281 Identities=15% Similarity=0.180 Sum_probs=186.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+||||||+|++||..| .|++|+|++. .+||++.. .. + ...+.. .....+.++.+
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~-~~-~--------~~~~~~--------~~~~~~~~l~~ 271 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKD-TV-G--------IENLIS--------VPYTTGSQLAA 271 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcccc-Cc-C--------cccccc--------cCCCCHHHHHH
Confidence 48999999999999999999 8999999975 48887754 10 0 001110 11235778889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++...++++++ .++++++|++++.. ++.|.|++.++. .+.||+||+|||. .|+.
T Consensus 272 ~l~~~l~~~gv--~i~~~~~V~~I~~~----------------~~~~~v~~~~g~-----~i~~d~lIlAtGa---~~~~ 325 (515)
T TIGR03140 272 NLEEHIKQYPI--DLMENQRAKKIETE----------------DGLIVVTLESGE-----VLKAKSVIVATGA---RWRK 325 (515)
T ss_pred HHHHHHHHhCC--eEEcCCEEEEEEec----------------CCeEEEEECCCC-----EEEeCEEEECCCC---CcCC
Confidence 99999988888 78889999999862 445777765553 7999999999995 5677
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|++| |...+.+.-++...... .....+++|+|||+|.+|+|+|..|+..+.+ ||++.+.+....
T Consensus 326 ~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~-----Vtli~~~~~l~~-- 389 (515)
T TIGR03140 326 LGVP---GEKEYIGKGVAYCPHCD------GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRH-----VTVLEFADELKA-- 389 (515)
T ss_pred CCCC---CHHHcCCCeEEEeeccC------hhhcCCCEEEEECCcHHHHHHHHHHHhcCcE-----EEEEEeCCcCCh--
Confidence 7788 65445444344333222 1235689999999999999999999887654 999987653100
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
.+ .
T Consensus 390 -------------~~-------------------------------~--------------------------------- 392 (515)
T TIGR03140 390 -------------DK-------------------------------V--------------------------------- 392 (515)
T ss_pred -------------hH-------------------------------H---------------------------------
Confidence 00 0
Q ss_pred cCCchhhhhcc-CeEEEEeCc-eeEEeCC-----cEEEcCC-----ceeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 322 MPEGFFSEAEK-GKIVFKRAS-KWWFWKG-----GLEFEDN-----TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 322 ~~~~~~~~l~~-g~v~v~~~~-i~~~~~~-----~v~~~dG-----~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+.+.+++ .+|+++.+. +.+++++ +|+++++ +++++|.||+|+|++|+..+++.. +..+
T Consensus 393 ----l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~------~~~~ 462 (515)
T TIGR03140 393 ----LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA------VELN 462 (515)
T ss_pred ----HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh------cccC
Confidence 0012222 357777664 6677654 3666542 358999999999999997654311 1112
Q ss_pred CCCcccceeeecCCCCCceEEEeecccch--hhhhHHHHHHHHHHHh
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIESVS--NLHTAELRSIWLSRLI 434 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~~~--~~~~~e~qa~~~a~~l 434 (511)
..+.+.+...+ .++.||+|++|...... ....|..|+.-+|..+
T Consensus 463 ~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i 508 (515)
T TIGR03140 463 RRGEIVIDERG-RTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSA 508 (515)
T ss_pred CCCeEEECCCC-CCCCCCEEEcccccCCccceEEEEEccHHHHHHHH
Confidence 33334444333 35789999999876532 2334555666555543
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=223.44 Aligned_cols=305 Identities=13% Similarity=0.121 Sum_probs=181.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----ccCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----EFTDFPWPNRDDPGF 73 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 73 (511)
|...+||+||||||+|++||..| .|++|+|+|+. .+||+|... ..|.-.+......+ ....+.++.. ....
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~ 79 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVG-GPVS 79 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccC-ccCc
Confidence 55679999999999999999999 89999999994 789987641 12211110000000 0011111100 0012
Q ss_pred CChHHHHHHHHHHH-----------Hhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 74 PSYTEILDYLESYA-----------KHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 74 ~~~~~~~~yl~~~~-----------~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
....++.++.+... ++. ++ .++.++.+. ++ . .+|++. +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~~-~~------------------~--~~v~v~-~~----- 130 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHARF-ES------------------P--NTVRVG-GE----- 130 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEEE-cc------------------C--CEEEEC-cE-----
Confidence 23344444433332 222 44 444444331 11 1 135552 21
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
++.||+||+||| +.|..|.+| |.+.. .++++.+.... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 131 ~~~~d~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvVIGgG~~g~E~A~~l~~~G~ 195 (463)
T PRK06370 131 TLRAKRIFINTG---ARAAIPPIP---GLDEV--GYLTNETIFSL-------DELPEHLVIIGGGYIGLEFAQMFRRFGS 195 (463)
T ss_pred EEEeCEEEEcCC---CCCCCCCCC---CCCcC--ceEcchHhhCc-------cccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 689999999999 568888888 65432 24444443321 1347899999999999999999998876
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ |+++.|.+. ++|... ...
T Consensus 196 ~-----Vtli~~~~~-~l~~~~-----------~~~-------------------------------------------- 214 (463)
T PRK06370 196 E-----VTVIERGPR-LLPRED-----------EDV-------------------------------------------- 214 (463)
T ss_pred e-----EEEEEcCCC-CCcccC-----------HHH--------------------------------------------
Confidence 4 999999875 333221 000
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEc--C-CceeeccEEEEecCCCCcc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFE--D-NTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~--d-G~~~~~D~VI~aTG~~~~~ 373 (511)
.+.+.+.+++.+|+++.+. +.+++++ + |.+. + +.++++|.||+|||++|+.
T Consensus 215 ---------------------~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 215 ---------------------AAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ---------------------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 0011123445567777664 6677543 2 3332 3 4469999999999999987
Q ss_pred cccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccch-hhhhHHHHHHHHHHHhcCC
Q 010421 374 KLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVS-NLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 437 (511)
..+. + .-.++..++++.+.+...+ .++.||+|++|...... ....+..|++.+|..+.+.
T Consensus 274 ~~l~-l--~~~g~~~~~~G~i~vd~~l-~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 274 DDLG-L--EAAGVETDARGYIKVDDQL-RTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CCcC-c--hhhCceECCCCcEeECcCC-cCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 5211 0 1011111334445555443 35789999999876543 3467899999999998764
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=221.67 Aligned_cols=303 Identities=13% Similarity=0.101 Sum_probs=181.8
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC-CcCccccCC-CcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD-SIGGIWKSC-SYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~-~~GG~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
++.+||+|||||++|++||..| .|.+|+|+|+.+ .+||+|... ..|. ..+........++ .......+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~-------k~l~~~~~~~~~~-~~~~~~~~ 72 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPT-------KTLVHDAQQHTDF-VRAIQRKN 72 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccch-------HHHHHHhccCCCH-HHHHHHHH
Confidence 0468999999999999999999 899999999976 489988541 1222 1111100000000 00111122
Q ss_pred HHHHHHHHH-----HHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 78 EILDYLESY-----AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 78 ~~~~yl~~~-----~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
++.++++.. .+..++ .+.. .++..++ .+.+.|...++ ..++.||+||+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~gv--~~~~-g~~~~i~------------------~~~~~v~~~~g----~~~~~~d~lviAT 127 (441)
T PRK08010 73 EVVNFLRNKNFHNLADMPNI--DVID-GQAEFIN------------------NHSLRVHRPEG----NLEIHGEKIFINT 127 (441)
T ss_pred HHHHHHHHhHHHHHhhcCCc--EEEE-EEEEEec------------------CCEEEEEeCCC----eEEEEeCEEEEcC
Confidence 333444221 111133 2222 2344333 23344443332 1258999999999
Q ss_pred cccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 153 GKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 153 G~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
| +.|..|.+| |.+.+.+ ++++.++... ...+++|+|||+|.+|+|+|..++..+.+ |+++.
T Consensus 128 G---s~p~~p~i~---G~~~~~~-v~~~~~~~~~-------~~~~~~v~ViGgG~~g~E~A~~l~~~g~~-----Vtli~ 188 (441)
T PRK08010 128 G---AQTVVPPIP---GITTTPG-VYDSTGLLNL-------KELPGHLGILGGGYIGVEFASMFANFGSK-----VTILE 188 (441)
T ss_pred C---CcCCCCCCC---CccCCCC-EEChhHhhcc-------cccCCeEEEECCCHHHHHHHHHHHHCCCe-----EEEEe
Confidence 9 567888888 6654433 5555444331 13568999999999999999999988754 99999
Q ss_pred ecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccc
Q 010421 233 RTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEE 312 (511)
Q Consensus 233 R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 312 (511)
|.+. ++|..+ ...
T Consensus 189 ~~~~-~l~~~~-----------~~~------------------------------------------------------- 201 (441)
T PRK08010 189 AASL-FLPRED-----------RDI------------------------------------------------------- 201 (441)
T ss_pred cCCC-CCCCcC-----------HHH-------------------------------------------------------
Confidence 9764 334322 000
Q ss_pred ccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--cEEEc-CCceeeccEEEEecCCCCcccccccCCCccccccc
Q 010421 313 DYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--GLEFE-DNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLE 388 (511)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~v~~~-dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~ 388 (511)
.+.+.+.+++.+|+++.+. +.+++.+ ++.+. ++.++++|.||+|+|.+|+..++.. ...++..
T Consensus 202 ----------~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~---~~~gl~~ 268 (441)
T PRK08010 202 ----------ADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHP---ENAGIAV 268 (441)
T ss_pred ----------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCc---hhcCcEE
Confidence 0011234555677777664 7777533 34432 2335899999999999999754211 0011111
Q ss_pred CCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 389 HPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 389 ~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
++++.+.+..++ .++.||+|++|..... ...+.+..|++.++..+.|+
T Consensus 269 ~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 269 NERGAIVVDKYL-HTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred CCCCcEEECCCc-ccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 334445554443 4578999999987764 34567888999999988773
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=223.13 Aligned_cols=296 Identities=16% Similarity=0.174 Sum_probs=180.7
Q ss_pred eEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
+|+|||||++|+++|..| .+.+|+|||+++.++ |..+.. +......+....++..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~~~-------------------~~~~~~~~~~~~~~~~ 60 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGACGL-------------------PYFVGGFFDDPNTMIA 60 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecCCC-------------------ceEeccccCCHHHhhc
Confidence 799999999999999999 356899999987652 111000 0000112222334444
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+.....+++++ .++++++|++|+.. +. .|.+.+..++....+.||+||+||| ..|..
T Consensus 61 ~~~~~~~~~gv--~~~~~~~V~~id~~----------------~~--~v~~~~~~~~~~~~~~yd~lviAtG---~~~~~ 117 (444)
T PRK09564 61 RTPEEFIKSGI--DVKTEHEVVKVDAK----------------NK--TITVKNLKTGSIFNDTYDKLMIATG---ARPII 117 (444)
T ss_pred CCHHHHHHCCC--eEEecCEEEEEECC----------------CC--EEEEEECCCCCEEEecCCEEEECCC---CCCCC
Confidence 44455566777 78889999999872 22 4666553223322344999999999 46777
Q ss_pred CCCCCCCCCCcccceEEeccccCccchh-hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKE-AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~-~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
|.+| |.+. ..+++...+.+.... ..-....+++|+|||+|.+|+|+|..+.+.+.+ |+++.+.+..+.+
T Consensus 118 ~~i~---g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-----Vtli~~~~~~l~~ 187 (444)
T PRK09564 118 PPIK---NINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKN-----VRIIQLEDRILPD 187 (444)
T ss_pred CCCC---CcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCc-----EEEEeCCcccCch
Confidence 8777 5432 124444433221100 000123578999999999999999999887654 9999887642211
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ..+ .
T Consensus 188 ~~~-----------~~~----------------------------~---------------------------------- 194 (444)
T PRK09564 188 SFD-----------KEI----------------------------T---------------------------------- 194 (444)
T ss_pred hcC-----------HHH----------------------------H----------------------------------
Confidence 110 000 0
Q ss_pred ccCCchhhhhccCeEEEEeCc-eeEEeCCc---EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccc
Q 010421 321 IMPEGFFSEAEKGKIVFKRAS-KWWFWKGG---LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPL 396 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~---v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (511)
+.+.+.+++.+|+++.+. +.++++++ .+..++.++++|.||+|||++++..+++-.+ +....++.+.+
T Consensus 195 ---~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~g-----l~~~~~g~i~v 266 (444)
T PRK09564 195 ---DVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTG-----LKTLKNGAIIV 266 (444)
T ss_pred ---HHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcC-----ccccCCCCEEE
Confidence 001123344456666654 66665443 2234556799999999999999876533211 11122334444
Q ss_pred eeeecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCC
Q 010421 397 YRGTIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 397 y~~~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 437 (511)
...+ .++.||+|++|..... .....|..||+.+|..|.|.
T Consensus 267 d~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~ 317 (444)
T PRK09564 267 DEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGR 317 (444)
T ss_pred CCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCC
Confidence 4433 3578999999976532 23467999999999999874
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=219.58 Aligned_cols=304 Identities=16% Similarity=0.164 Sum_probs=185.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCcc-------c-cCCCCCCCCCC--
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDY-------E-FTDFPWPNRDD-- 70 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~-- 70 (511)
+.+||+|||||++|+++|..| .|.+|+|||+. .+||+|.. ++| .|+..+ . ....++.....
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n---~Gc---iPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN---IGC---VPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec---CCc---cccHHHHHHHHHHHHHhhccccCCcccC
Confidence 458999999999999999999 89999999995 79999864 333 333322 1 11111100000
Q ss_pred CCCCChHHHHHHHHHHHHhcC-------CC--CceE-eeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCce
Q 010421 71 PGFPSYTEILDYLESYAKHFD-------VF--KCVR-FNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSI 140 (511)
Q Consensus 71 ~~~~~~~~~~~yl~~~~~~~~-------~~--~~i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (511)
..-....++.++.+...+.+. +. ..+. ...+|..++ ...|+|++.++. .
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id------------------~~~~~V~~~~g~---~ 136 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD------------------ERTLTVTLNDGG---E 136 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec------------------CCEEEEEecCCC---e
Confidence 111244555555554433221 10 0122 223444443 345778776542 2
Q ss_pred eEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhc
Q 010421 141 QRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESN 220 (511)
Q Consensus 141 ~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~ 220 (511)
.++.||+||+||| ..|..|++| |.+.. ..+++.+...+ ...+++|+|||+|.+|+|+|..|++.+
T Consensus 137 ~~~~~d~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~~~l-------~~~~~~vvViG~G~~G~E~A~~l~~~g 201 (468)
T PRK14694 137 QTVHFDRAFIGTG---ARPAEPPVP---GLAET--PYLTSTSALEL-------DHIPERLLVIGASVVALELAQAFARLG 201 (468)
T ss_pred EEEECCEEEEeCC---CCCCCCCCC---CCCCC--ceEcchhhhch-------hcCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 3689999999999 568888888 65432 24444332221 134689999999999999999999887
Q ss_pred CCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcc
Q 010421 221 QGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLL 300 (511)
Q Consensus 221 ~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
.+ |+++.+.. ++|... ..
T Consensus 202 ~~-----Vtlv~~~~--~l~~~~-----------~~-------------------------------------------- 219 (468)
T PRK14694 202 SR-----VTVLARSR--VLSQED-----------PA-------------------------------------------- 219 (468)
T ss_pred Ce-----EEEEECCC--CCCCCC-----------HH--------------------------------------------
Confidence 54 99998742 333221 00
Q ss_pred cCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc--EEE-cCCceeeccEEEEecCCCCccccc
Q 010421 301 KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG--LEF-EDNTKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 301 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~--v~~-~dG~~~~~D~VI~aTG~~~~~~~~ 376 (511)
+.+.+.+.+++.+|+++.+. +.+++.++ +.+ .++.++++|.||+|||.+|+..++
T Consensus 220 ---------------------~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l 278 (468)
T PRK14694 220 ---------------------VGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENL 278 (468)
T ss_pred ---------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCC
Confidence 00111123445567777764 66665432 332 234469999999999999997653
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.. .-.++. ..++.+.+..++ .++.||+|++|.... ....+.+..|++.+|..+.|.
T Consensus 279 ~l---~~~g~~-~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 279 NL---ESIGVE-TERGAIRIDEHL-QTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred Cc---hhcCcc-cCCCeEeeCCCc-ccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 21 101111 123334444443 357899999998764 334577889999999998764
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=225.67 Aligned_cols=316 Identities=17% Similarity=0.197 Sum_probs=186.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC--------CcCccccC-CCcCceeccCCCCccc-----cCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD--------SIGGIWKS-CSYNSTKLQSHRSDYE-----FTDFP 64 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~--------~~GG~w~~-~~~~~~~~~~~~~~~~-----~~~~~ 64 (511)
|+-.+||+||||||+|+.||..+ .|.+|+|+|+.. .+||++.. ..+|.-.+..+...+. ...+.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 44458999999999999999999 899999999631 48998643 1444322211111110 01111
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 65 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
+.. .. -....++.++++..++.++. .+....++..|+.... .+.+ .+..+|.+.+.+ ....+.
T Consensus 82 ~~~--~~-~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~v~~i~g-------~a~~---~~~~~v~v~~~~--~~~~i~ 144 (499)
T PTZ00052 82 WKT--SS-SFNWGKLVTTVQNHIRSLNF--SYRTGLRSSKVEYING-------LAKL---KDEHTVSYGDNS--QEETIT 144 (499)
T ss_pred CCC--CC-CcCHHHHHHHHHHHHHHhhH--HHHHHhhhcCcEEEEE-------EEEE---ccCCEEEEeeCC--CceEEE
Confidence 111 01 34667888888877766543 2222222211111000 0000 122356665432 123689
Q ss_pred eCEEEEeecccCCCCCCCC-CCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCC
Q 010421 145 FEFLVVCTGKYGDVPIIPA-FPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGP 223 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p~-~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 223 (511)
||+|||||| +.|..|. +| |.+.. .+.+.+...+ ...+++|+|||+|.+|+|+|..|+..+.+
T Consensus 145 ~d~lIIATG---s~p~~p~~i~---G~~~~---~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~~G~~- 207 (499)
T PTZ00052 145 AKYILIATG---GRPSIPEDVP---GAKEY---SITSDDIFSL-------SKDPGKTLIVGASYIGLETAGFLNELGFD- 207 (499)
T ss_pred CCEEEEecC---CCCCCCCCCC---Cccce---eecHHHHhhh-------hcCCCeEEEECCCHHHHHHHHHHHHcCCc-
Confidence 999999999 4677774 77 54321 2333333221 12457999999999999999999988765
Q ss_pred CCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCC
Q 010421 224 EGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYG 303 (511)
Q Consensus 224 ~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (511)
||++.|+ . +++..+ ...
T Consensus 208 ----Vtli~~~-~-~l~~~d-------~~~-------------------------------------------------- 224 (499)
T PTZ00052 208 ----VTVAVRS-I-PLRGFD-------RQC-------------------------------------------------- 224 (499)
T ss_pred ----EEEEEcC-c-ccccCC-------HHH--------------------------------------------------
Confidence 9999874 2 233221 000
Q ss_pred CCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--C--cEEEcCCceeeccEEEEecCCCCccccccc
Q 010421 304 LKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--G--GLEFEDNTKLEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 304 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~ 378 (511)
.+.+.+.+++.+|+++.+. +.+++. + .|++.+|+++++|.||+|+|++|+..++.+
T Consensus 225 -------------------~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l 285 (499)
T PTZ00052 225 -------------------SEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNL 285 (499)
T ss_pred -------------------HHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCc
Confidence 0011123444556776664 445542 2 256778988999999999999999765321
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHhcCC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.-.++..++++.+.+... .++.||+|++|.... +...+.|..|++.+|..+.+.
T Consensus 286 ---~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 286 ---NAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred ---hhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 101111122332222222 467899999998653 345678999999999988764
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=219.95 Aligned_cols=317 Identities=15% Similarity=0.172 Sum_probs=178.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc-----cCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE-----FTDFPWPNRDDPG 72 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 72 (511)
|+..+||+||||||+|++||..| .|.+|+|+|+ ..+||++... ..|+-.+........ ...+.... ..
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~---~~ 76 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG---EV 76 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc---Cc
Confidence 44568999999999999999999 8999999998 5789987652 223211100000000 00011100 11
Q ss_pred CCChHHHHHHHHHHHHhcCCCCceEe-eeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEe
Q 010421 73 FPSYTEILDYLESYAKHFDVFKCVRF-NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVC 151 (511)
Q Consensus 73 ~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlA 151 (511)
......+....+...++..-.-...+ ...|+.++.... + .+.. +|.+...+ ++..++.||+||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~----------~-~~~~--~v~v~~~~-g~~~~~~~d~lViA 142 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGT----------F-TDAN--TLEVDLND-GGTETVTFDNAIIA 142 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE----------E-cCCC--EEEEEecC-CCeeEEEcCEEEEe
Confidence 12223333332222211100000011 012333331000 0 0022 34443322 22337899999999
Q ss_pred ecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 010421 152 TGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMI 231 (511)
Q Consensus 152 tG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~ 231 (511)
||+ .|..| | |.+ ..+.++.+.+... ....+++|+|||+|.+|+|+|..+++.+.+ |+++
T Consensus 143 TGs---~p~~~--p---g~~-~~~~v~~~~~~~~-------~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~-----Vtlv 201 (466)
T PRK07818 143 TGS---STRLL--P---GTS-LSENVVTYEEQIL-------SRELPKSIVIAGAGAIGMEFAYVLKNYGVD-----VTIV 201 (466)
T ss_pred CCC---CCCCC--C---CCC-CCCcEEchHHHhc-------cccCCCeEEEECCcHHHHHHHHHHHHcCCe-----EEEE
Confidence 994 55543 4 432 1223444332111 113568999999999999999999988765 9999
Q ss_pred EecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccc
Q 010421 232 VRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFE 311 (511)
Q Consensus 232 ~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 311 (511)
.+.+. ++|..+ ..
T Consensus 202 ~~~~~-~l~~~d-----------~~------------------------------------------------------- 214 (466)
T PRK07818 202 EFLDR-ALPNED-----------AE------------------------------------------------------- 214 (466)
T ss_pred ecCCC-cCCccC-----------HH-------------------------------------------------------
Confidence 98774 333321 00
Q ss_pred cccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEc--CCc--eeeccEEEEecCCCCcccccccCCCc
Q 010421 312 EDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFE--DNT--KLEADVVILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~--dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~ 382 (511)
+.+.+.+.+++.+|+++.+. +.++++++ +++. ||+ ++++|.||+|+|++|+..++.+ .
T Consensus 215 ----------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l---~ 281 (466)
T PRK07818 215 ----------VSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGL---E 281 (466)
T ss_pred ----------HHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCc---h
Confidence 00111234555678888765 77775432 3444 674 5999999999999999754211 1
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
..++....++.+.+...+ .++.||+|++|.... ....+.|..|++.+|..+.|.
T Consensus 282 ~~g~~~~~~g~i~vd~~~-~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 282 KTGVALTDRGAIAIDDYM-RTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGA 336 (466)
T ss_pred hcCcEECCCCcEeeCCCc-ccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 111111233344454443 357899999998764 344678999999999999874
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-24 Score=217.48 Aligned_cols=296 Identities=13% Similarity=0.088 Sum_probs=176.8
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC-cCccccCC-CcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS-IGGIWKSC-SYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~-~GG~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
++.+||+||||||+|++||..| .|.+|+|+|+++. +||++... ..| ...+-.... ......
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP-------~k~~~~~~~--------~~~~~~ 65 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIP-------TKTLLVAAE--------KNLSFE 65 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCcccc-------chHhhhhhh--------cCCCHH
Confidence 1468999999999999999999 8999999999864 69875431 122 111111000 001122
Q ss_pred HHHHHHH-----------HHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeC
Q 010421 78 EILDYLE-----------SYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFE 146 (511)
Q Consensus 78 ~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 146 (511)
++.++.+ ....+.++ .+..++ +..++ + .+|.+..++ ...++.||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g~-~~~~~------------------~--~~v~v~~~~--~~~~~~~d 120 (438)
T PRK07251 66 QVMATKNTVTSRLRGKNYAMLAGSGV--DLYDAE-AHFVS------------------N--KVIEVQAGD--EKIELTAE 120 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEcc------------------C--CEEEEeeCC--CcEEEEcC
Confidence 2222222 22223333 333322 22111 1 145555432 12368999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCC
Q 010421 147 FLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQ 226 (511)
Q Consensus 147 ~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~ 226 (511)
+||+||| ..|+.|.+| |.+... .++++.++..+ ...+++|+|||+|.+|+|+|..+++.+.+
T Consensus 121 ~vViATG---s~~~~p~i~---G~~~~~-~v~~~~~~~~~-------~~~~~~vvIIGgG~~g~e~A~~l~~~g~~---- 182 (438)
T PRK07251 121 TIVINTG---AVSNVLPIP---GLADSK-HVYDSTGIQSL-------ETLPERLGIIGGGNIGLEFAGLYNKLGSK---- 182 (438)
T ss_pred EEEEeCC---CCCCCCCCC---CcCCCC-cEEchHHHhcc-------hhcCCeEEEECCCHHHHHHHHHHHHcCCe----
Confidence 9999999 457788888 654332 25555444332 13478999999999999999999987654
Q ss_pred cEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCC
Q 010421 227 PCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKP 306 (511)
Q Consensus 227 ~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 306 (511)
|+++.|.+.. +|... ... ..
T Consensus 183 -Vtli~~~~~~-l~~~~-----------~~~----------------------------~~------------------- 202 (438)
T PRK07251 183 -VTVLDAASTI-LPREE-----------PSV----------------------------AA------------------- 202 (438)
T ss_pred -EEEEecCCcc-CCCCC-----------HHH----------------------------HH-------------------
Confidence 9999998752 33221 000 00
Q ss_pred CCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--cE-EEcCCceeeccEEEEecCCCCcccccccCCCc
Q 010421 307 DHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--GL-EFEDNTKLEADVVILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~v-~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~ 382 (511)
.+.+.+++.+|+++.+. +.+++.+ ++ +..+|+++++|.||+|||.+|+.....+ .
T Consensus 203 ------------------~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l---~ 261 (438)
T PRK07251 203 ------------------LAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGL---E 261 (438)
T ss_pred ------------------HHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCc---h
Confidence 00123444567777664 6666543 33 3346778999999999999998654221 1
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
-.++....++.+.+... +.++.||+|++|..... ...+.+..|++.++..+.+.
T Consensus 262 ~~~~~~~~~g~i~vd~~-~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 262 NTDIELTERGAIKVDDY-CQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred hcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 01111123344445443 34578999999987653 33467777888888887654
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=218.38 Aligned_cols=308 Identities=15% Similarity=0.146 Sum_probs=179.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----ccCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----EFTDFPWPNRDDPGF 73 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 73 (511)
|+..+||+||||||+|+.+|..+ .|.+|+|+|+.+.+||+|... ++|...+-.....+ ....+.+... ...
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~--~~~ 78 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG--EPK 78 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC--CCC
Confidence 66789999999999999999999 899999999988899987542 34442211100000 0111111100 111
Q ss_pred CChHHHHHHHHHHH-----------HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 74 PSYTEILDYLESYA-----------KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 74 ~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
....++.++.+... +..++ .+..+ ++..++ .. +|.+...+ ++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~a~~~~------------------~~--~v~v~~~~-g~~~~ 134 (471)
T PRK06467 79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKV--TVVNG-LGKFTG------------------GN--TLEVTGED-GKTTV 134 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc------------------CC--EEEEecCC-CceEE
Confidence 23344444433332 33344 33332 232222 11 34444322 22237
Q ss_pred EEeCEEEEeecccCCCCC-CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 143 YGFEFLVVCTGKYGDVPI-IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 143 ~~~d~vVlAtG~~~~~p~-~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
+.||+||+|||+ .|. .|.++ +.. ..++.+.+...+ ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 135 ~~~d~lViATGs---~p~~~p~~~---~~~---~~v~~~~~~~~~-------~~~~~~vvIiGgG~iG~E~A~~l~~~G~ 198 (471)
T PRK06467 135 IEFDNAIIAAGS---RPIQLPFIP---HDD---PRIWDSTDALEL-------KEVPKRLLVMGGGIIGLEMGTVYHRLGS 198 (471)
T ss_pred EEcCEEEEeCCC---CCCCCCCCC---CCC---CcEEChHHhhcc-------ccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 899999999994 565 34444 321 124444433322 1246899999999999999999998876
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ ||++.+.+. ++|..+ .. +..
T Consensus 199 ~-----Vtlv~~~~~-il~~~d-------~~--------------------------------~~~-------------- 219 (471)
T PRK06467 199 E-----VDVVEMFDQ-VIPAAD-------KD--------------------------------IVK-------------- 219 (471)
T ss_pred C-----EEEEecCCC-CCCcCC-------HH--------------------------------HHH--------------
Confidence 5 999999875 333322 00 000
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCc--EEEcCC----ceeeccEEEEecCCCCc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGG--LEFEDN----TKLEADVVILCTGYDGK 372 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~--v~~~dG----~~~~~D~VI~aTG~~~~ 372 (511)
.+.+.+++. |+++.+. +.+++ +++ ++++++ +++++|.||+|+|++|+
T Consensus 220 -----------------------~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 220 -----------------------VFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred -----------------------HHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 011123333 5555543 55554 333 334442 35999999999999999
Q ss_pred ccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 373 KKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
..++.. ...++..++++.+.+..++ .++.||+|++|.... +...+.|..|++.+|..+.|.
T Consensus 276 ~~~l~~---~~~gl~~~~~G~I~Vd~~~-~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 276 GKLLDA---EKAGVEVDERGFIRVDKQC-RTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred CCccCh---hhcCceECCCCcEeeCCCc-ccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 764221 1111212334444444433 357899999998754 344678999999999999774
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=216.17 Aligned_cols=310 Identities=14% Similarity=0.094 Sum_probs=182.2
Q ss_pred CeEEEECCCHHHHHHHHhccCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCChHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 79 (511)
+||+||||||+|..+|..+.|.+|+|+|+ +.+||++... +.|.-.+......+. .+.+.+... ..-....++
T Consensus 2 yD~vVIG~G~~g~~aa~~~~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERFADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE--LDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHHCCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC--CCcCCHHHH
Confidence 79999999999999887778999999998 5789987652 233322111111111 011111100 112345666
Q ss_pred HHHHHHHHHhcCCC-CceE-ee-eEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 80 LDYLESYAKHFDVF-KCVR-FN-SKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 80 ~~yl~~~~~~~~~~-~~i~-~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++.....+++.-. .... +. ..|.-+... +.+ .+..+|++.++. ++.||+||+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~----------a~~---~~~~~V~v~~g~-----~~~~d~lViATG--- 137 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH----------ARF---IGPKTLRTGDGE-----EITADQVVIAAG--- 137 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEE----------EEE---ecCCEEEECCCC-----EEEeCEEEEcCC---
Confidence 66665554443110 0000 10 011111100 000 111256665443 789999999999
Q ss_pred CCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 157 DVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 157 ~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+.|..|.+| |.+.. .+..+.+...+ ...+++|+|||+|.+|+|+|..+++.+.+ |+++.|++.
T Consensus 138 s~p~~p~i~---g~~~~--~~~~~~~~~~l-------~~~~~~vvIIGgG~iG~E~A~~l~~~G~~-----Vtli~~~~~ 200 (451)
T PRK07846 138 SRPVIPPVI---ADSGV--RYHTSDTIMRL-------PELPESLVIVGGGFIAAEFAHVFSALGVR-----VTVVNRSGR 200 (451)
T ss_pred CCCCCCCCC---CcCCc--cEEchHHHhhh-------hhcCCeEEEECCCHHHHHHHHHHHHcCCe-----EEEEEcCCc
Confidence 578888888 53321 12233332221 13468999999999999999999988754 999999875
Q ss_pred eeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccc
Q 010421 237 WTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYAS 316 (511)
Q Consensus 237 ~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 316 (511)
. +|..+ . .. ..
T Consensus 201 l-l~~~d-------~----~~----------------------------~~----------------------------- 211 (451)
T PRK07846 201 L-LRHLD-------D----DI----------------------------SE----------------------------- 211 (451)
T ss_pred c-ccccC-------H----HH----------------------------HH-----------------------------
Confidence 2 22221 0 00 00
Q ss_pred ccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCC
Q 010421 317 CQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPS 391 (511)
Q Consensus 317 ~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
.+.+.++ .+|+++.+. +.+++.+ + |.+.+|+++++|.||+|||++|+..++.. .-.++..+++
T Consensus 212 --------~l~~l~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~---~~~gl~~~~~ 279 (451)
T PRK07846 212 --------RFTELAS-KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDA---AAAGVDVDED 279 (451)
T ss_pred --------HHHHHHh-cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCc---hhcCceECCC
Confidence 0001122 236766654 6666533 3 55678888999999999999999765321 1111111334
Q ss_pred CcccceeeecCCCCCceEEEeecccch-hhhhHHHHHHHHHHHhcCC
Q 010421 392 GLLPLYRGTIHPLIPNMAFVGYIESVS-NLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 392 ~~~~ly~~~~~~~~pnl~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 437 (511)
+.+.+..++ .++.||+|++|...... ..+.+..|++.++..+.+.
T Consensus 280 G~i~Vd~~~-~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 280 GRVVVDEYQ-RTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred CcEeECCCc-ccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 445454443 37789999999876543 3468999999999998764
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=228.08 Aligned_cols=298 Identities=21% Similarity=0.237 Sum_probs=175.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+||||||||++||..| .|++|+|||+.+.+||.+.. ..|+.+ ...++.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~-~IP~~R------------------------lp~evL 592 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN-IIPQFR------------------------IPAELI 592 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee-eccccc------------------------ccHHHH
Confidence 357999999999999999999 89999999999999998765 332211 113344
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
++..+.+.++++ .+++++.| .+.. .+.. ...||+||||||+. .|.
T Consensus 593 ~~die~l~~~GV--e~~~gt~V-di~l-------------------------e~L~-----~~gYDaVILATGA~--~~~ 637 (1019)
T PRK09853 593 QHDIEFVKAHGV--KFEFGCSP-DLTV-------------------------EQLK-----NEGYDYVVVAIGAD--KNG 637 (1019)
T ss_pred HHHHHHHHHcCC--EEEeCcee-EEEh-------------------------hhhe-----eccCCEEEECcCCC--CCC
Confidence 444455666787 78888776 2221 1111 44599999999974 355
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.+.++ |.+ ..++++.++.............+|+|+|||+|.+|+|+|..+.+.+.. ++|+++.|++.-.+|
T Consensus 638 ~l~Ip---G~~---~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGa---keVTLVyRr~~~~MP 708 (1019)
T PRK09853 638 GLKLE---GGN---QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGV---EKVTVVYRRTKQEMP 708 (1019)
T ss_pred CCCCC---Ccc---CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCC---ceEEEEEccCccccc
Confidence 55666 533 124443333210000001234689999999999999999988877431 369999998743333
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ..+... +..-+. +... +
T Consensus 709 A~~---------------------------------------eEle~A----leeGVe-----~~~~---------~--- 728 (1019)
T PRK09853 709 AWR---------------------------------------EEYEEA----LEDGVE-----FKEL---------L--- 728 (1019)
T ss_pred ccH---------------------------------------HHHHHH----HHcCCE-----EEeC---------C---
Confidence 221 000000 000000 0000 0
Q ss_pred ccCCchhhhhccCeEEEEeCceeEEeCCc----EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccc
Q 010421 321 IMPEGFFSEAEKGKIVFKRASKWWFWKGG----LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPL 396 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~i~~~~~~~----v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (511)
.... ...+|++.+..-.+...+++| +...++.++++|.||+|+|++++..+.+..+ +..+..+.+.+
T Consensus 729 -~p~~---I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~G-----L~ld~~G~I~V 799 (1019)
T PRK09853 729 -NPES---FDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANG-----IPLDKKGWPVV 799 (1019)
T ss_pred -ceEE---EEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcC-----ccccCCCCEEe
Confidence 0000 001233332211111112222 2223455799999999999999876543211 11122333333
Q ss_pred eeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCCCC
Q 010421 397 YRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDKFK 439 (511)
Q Consensus 397 y~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~~~ 439 (511)
. ....++.|++|++|.... +.+...|..|++.+|..+.+...
T Consensus 800 D-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 800 D-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred C-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 2 234467899999998753 45567899999999999877554
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=214.80 Aligned_cols=322 Identities=14% Similarity=0.127 Sum_probs=183.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCC--------CCcCccccCC-CcCceeccCCCCccc----cCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEAS--------DSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWP 66 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~--------~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~ 66 (511)
+.+||+|||+|++|..||..+ . |.+|+|+|+. ..+||++... +.|.-.+......+. ...+.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 568999999999999999999 4 7999999984 5799987652 333322211111110 1111110
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcC--CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC---CCCcee
Q 010421 67 NRDDPGFPSYTEILDYLESYAKHFD--VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH---NSNSIQ 141 (511)
Q Consensus 67 ~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~ 141 (511)
......-.....+.++.+.+.++.. ....+.-...|+-+.-. +.+ .+..+|.+... +++..+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~----------a~f---~~~~~v~V~~~~~~~~~~~~ 148 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW----------GAL---EDKNVVLVRESADPKSAVKE 148 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE----------EEE---ccCCEEEEeeccCCCCCcce
Confidence 0000111233344444433332210 00000000011111110 000 11224666532 111124
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
.+.||+|||||| +.|..|++| |.+. ++.+.+...+ ...+++|+|||+|.+|+|+|..++....
T Consensus 149 ~~~~d~lIIATG---s~p~~p~i~---G~~~----~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~~~~l~~ 211 (486)
T TIGR01423 149 RLQAEHILLATG---SWPQMLGIP---GIEH----CISSNEAFYL-------DEPPRRVLTVGGGFISVEFAGIFNAYKP 211 (486)
T ss_pred EEECCEEEEecC---CCCCCCCCC---Chhh----eechhhhhcc-------ccCCCeEEEECCCHHHHHHHHHHHHhcc
Confidence 799999999999 568888888 6542 2333222211 1346899999999999999987766521
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
. +.+||++.|.+.. +|..+ . .
T Consensus 212 ~--G~~Vtli~~~~~i-l~~~d-------~----~--------------------------------------------- 232 (486)
T TIGR01423 212 R--GGKVTLCYRNNMI-LRGFD-------S----T--------------------------------------------- 232 (486)
T ss_pred C--CCeEEEEecCCcc-ccccC-------H----H---------------------------------------------
Confidence 1 2359999998752 33322 0 0
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--C---cEEEcCCceeeccEEEEecCCCCcccc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--G---GLEFEDNTKLEADVVILCTGYDGKKKL 375 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~---~v~~~dG~~~~~D~VI~aTG~~~~~~~ 375 (511)
+.+.+.+.+++.+|+++.+. +.+++. + .|.+.+|+++++|.||+|||++|+..+
T Consensus 233 --------------------~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 233 --------------------LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred --------------------HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 00111123445567777765 666653 2 266778888999999999999999764
Q ss_pred cccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 376 KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
+.+ .-.++..++++.+.+..++ .++.||+|++|..... ...+.|..|++.++..+.|.
T Consensus 293 l~l---~~~gl~~~~~G~I~Vd~~l-~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 293 LQL---DKVGVELTKKGAIQVDEFS-RTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred CCc---hhhCceECCCCCEecCCCC-cCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 321 1011112334445555444 3678999999987653 34578999999999998763
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=220.99 Aligned_cols=302 Identities=17% Similarity=0.150 Sum_probs=180.6
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-CCcCceeccCCCCccccCC---CCCCCCCCCCCCCh--
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHRSDYEFTD---FPWPNRDDPGFPSY-- 76 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 76 (511)
+||+||||||+|+++|..+ .|.+|+|+|+.. +||+|.. ...|...+......+++.. +.+... ...+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~--~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAA--TVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccC--CCccCHHH
Confidence 6999999999999999999 899999999964 9999864 1233322211111111110 111000 111122
Q ss_pred -----HHHHHHH-----HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeC
Q 010421 77 -----TEILDYL-----ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFE 146 (511)
Q Consensus 77 -----~~~~~yl-----~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 146 (511)
+++..++ ....+++++ .+..+ ++..++ ..+|.+.++. ..+.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~~~--------------------~~~v~v~~g~----~~~~~~ 130 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGV--DYLRG-RARFKD--------------------PKTVKVDLGR----EVRGAK 130 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCc--EEEEE-EEEEcc--------------------CCEEEEcCCe----EEEEeC
Confidence 2332222 223344454 33333 222211 1246664421 257899
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCC
Q 010421 147 FLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQ 226 (511)
Q Consensus 147 ~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~ 226 (511)
+||+||| ..|..|.+| |.+.. .++++.+.... ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 131 ~lIiATG---s~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvIIGgG~~g~E~A~~l~~~g~~---- 191 (463)
T TIGR02053 131 RFLIATG---ARPAIPPIP---GLKEA--GYLTSEEALAL-------DRIPESLAVIGGGAIGVELAQAFARLGSE---- 191 (463)
T ss_pred EEEEcCC---CCCCCCCCC---CcccC--ceECchhhhCc-------ccCCCeEEEECCCHHHHHHHHHHHHcCCc----
Confidence 9999999 568888888 65543 24555444321 12358999999999999999999988765
Q ss_pred cEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCC
Q 010421 227 PCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKP 306 (511)
Q Consensus 227 ~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 306 (511)
||++.|.+. ++|..+ ... .
T Consensus 192 -Vtli~~~~~-~l~~~d-----------~~~----------------------------~-------------------- 210 (463)
T TIGR02053 192 -VTILQRSDR-LLPREE-----------PEI----------------------------S-------------------- 210 (463)
T ss_pred -EEEEEcCCc-CCCccC-----------HHH----------------------------H--------------------
Confidence 999999875 333321 000 0
Q ss_pred CCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEc---CCceeeccEEEEecCCCCccccccc
Q 010421 307 DHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFE---DNTKLEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~---dG~~~~~D~VI~aTG~~~~~~~~~~ 378 (511)
..+.+.+++.+|+++.+. |.+++.+ + +.+. +++++++|.||+|||++++...+.
T Consensus 211 -----------------~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~- 272 (463)
T TIGR02053 211 -----------------AAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLG- 272 (463)
T ss_pred -----------------HHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCC-
Confidence 001123445567777765 6666533 2 3333 235699999999999999875211
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
+ ...++..++++.+.+...+ .++.||+|++|..... ...+.|..|++.+|..+.+.
T Consensus 273 l--~~~g~~~~~~G~i~vd~~~-~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 273 L--EKAGVKLDERGGILVDETL-RTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred c--cccCCEECCCCcEeECCCc-cCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 1 1111111334445454443 4578999999987654 33578999999999998774
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=230.64 Aligned_cols=293 Identities=17% Similarity=0.179 Sum_probs=188.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc------cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL------RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFP 74 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (511)
|+ +++|+|||+|++|+.+|..| .+++|+||++++.+ .|..+.+. . .+. . .
T Consensus 1 m~-~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~-------~Y~r~~L~--~---~~~---------~--~ 56 (847)
T PRK14989 1 MS-KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI-------AYDRVHLS--S---YFS---------H--H 56 (847)
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC-------cccCCcch--H---hHc---------C--C
Confidence 53 46899999999999999998 24789999998776 33322221 0 000 0 1
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
..+++......+.++.++ .++.+++|++++.. ...|.+.++. .+.||+||+|||
T Consensus 57 ~~~~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~------------------~~~V~~~~G~-----~i~yD~LVIATG- 110 (847)
T PRK14989 57 TAEELSLVREGFYEKHGI--KVLVGERAITINRQ------------------EKVIHSSAGR-----TVFYDKLIMATG- 110 (847)
T ss_pred CHHHccCCCHHHHHhCCC--EEEcCCEEEEEeCC------------------CcEEEECCCc-----EEECCEEEECCC-
Confidence 123333333445556777 78888999998862 1245555543 789999999999
Q ss_pred cCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 155 YGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 155 ~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
+.|..|.+| |.+.. .++......+.... ......+++++|||+|.+|+|+|..|++.+.+ |+++.+.
T Consensus 111 --s~p~~p~ip---G~~~~--~v~~~rt~~d~~~l-~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~-----VtvVe~~ 177 (847)
T PRK14989 111 --SYPWIPPIK---GSETQ--DCFVYRTIEDLNAI-EACARRSKRGAVVGGGLLGLEAAGALKNLGVE-----THVIEFA 177 (847)
T ss_pred --CCcCCCCCC---CCCCC--CeEEECCHHHHHHH-HHHHhcCCeEEEECCCHHHHHHHHHHHHcCCe-----EEEEecc
Confidence 468888888 65421 12222222111100 01224678999999999999999999988765 9999997
Q ss_pred CceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccc
Q 010421 235 THWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDY 314 (511)
Q Consensus 235 ~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 314 (511)
+.+ +|+.. +. ...
T Consensus 178 ~~l-l~~~l------d~--------------------------------~~~---------------------------- 190 (847)
T PRK14989 178 PML-MAEQL------DQ--------------------------------MGG---------------------------- 190 (847)
T ss_pred ccc-hhhhc------CH--------------------------------HHH----------------------------
Confidence 752 22211 00 000
Q ss_pred ccccccccCCchhhhhccCeEEEEeCc-eeEEeCC------cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccc
Q 010421 315 ASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG------GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLL 387 (511)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~------~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~ 387 (511)
..+.+.+++.+|+++.+. +.++.++ .|+++||+++++|.||+|+|++|+..+....+ +.
T Consensus 191 ---------~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~G-----l~ 256 (847)
T PRK14989 191 ---------EQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCG-----LA 256 (847)
T ss_pred ---------HHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcC-----cc
Confidence 011133455567777765 6677532 36789999999999999999999976532111 11
Q ss_pred cCCCCcccceeeecCCCCCceEEEeecccc-----hhhhhHHHHHHHHHHHhcCCC
Q 010421 388 EHPSGLLPLYRGTIHPLIPNMAFVGYIESV-----SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 388 ~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.++.+.+.+..++ .++.||+|++|..... .....+..||+.+|..|.|..
T Consensus 257 ~~~~G~I~VD~~l-~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 257 VAPRGGIVINDSC-QTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred CCCCCcEEECCCC-cCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 2334455555544 3568999999976532 234568889999999998753
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=215.56 Aligned_cols=292 Identities=13% Similarity=0.107 Sum_probs=176.5
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
...++|+|||||++|+.||..| .+ .+|+|++++... .|.. ...++. +...+..+ ..+...
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~-------~y~r--~~l~~~---~~~~~~~~---~~~~~~- 64 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL-------PYER--PPLSKS---MLLEDSPQ---LQQVLP- 64 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC-------CCCC--CCCCHH---HHCCCCcc---ccccCC-
Confidence 0457899999999999999999 44 479999997654 2211 111110 10000000 011111
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~ 157 (511)
..+..+.++ .++.+++|..++.. . ..|.+.++. ++.||+||+|||+
T Consensus 65 ------~~~~~~~~i--~~~~g~~V~~id~~-----------------~-~~v~~~~g~-----~~~yd~LViATGs--- 110 (396)
T PRK09754 65 ------ANWWQENNV--HLHSGVTIKTLGRD-----------------T-RELVLTNGE-----SWHWDQLFIATGA--- 110 (396)
T ss_pred ------HHHHHHCCC--EEEcCCEEEEEECC-----------------C-CEEEECCCC-----EEEcCEEEEccCC---
Confidence 112234566 77888899999862 1 246665554 7999999999994
Q ss_pred CCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
.|+.|+++ +.. ...++......+... .......+++|+|||+|.+|+|+|..|++.+.+ ||++.+.+..
T Consensus 111 ~~~~~p~~---~~~--~~~v~~~~~~~da~~-l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~-----Vtlv~~~~~~ 179 (396)
T PRK09754 111 AARPLPLL---DAL--GERCFTLRHAGDAAR-LREVLQPERSVVIVGAGTIGLELAASATQRRCK-----VTVIELAATV 179 (396)
T ss_pred CCCCCCCC---CcC--CCCEEecCCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCe-----EEEEecCCcc
Confidence 56655554 221 112333222211100 001234679999999999999999999987654 9999987752
Q ss_pred eecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccc
Q 010421 238 TVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASC 317 (511)
Q Consensus 238 ~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 317 (511)
+++.. + ...
T Consensus 180 -l~~~~------~----~~~------------------------------------------------------------ 188 (396)
T PRK09754 180 -MGRNA------P----PPV------------------------------------------------------------ 188 (396)
T ss_pred -hhhhc------C----HHH------------------------------------------------------------
Confidence 22110 0 000
Q ss_pred cccccCCchhhhhccCeEEEEeCc-eeEEeCCc---EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCc
Q 010421 318 QMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG---LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGL 393 (511)
Q Consensus 318 ~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~---v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
.+.+.+.+++.+|+++.+. +.+++.++ +.+.||+++++|.||+|+|.+++..+....+ +. .++.
T Consensus 189 -----~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~g-----l~--~~~g 256 (396)
T PRK09754 189 -----QRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREAN-----LD--TANG 256 (396)
T ss_pred -----HHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcC-----CC--cCCC
Confidence 0001123444567777664 67776432 5678999999999999999999876533211 11 1223
Q ss_pred ccceeeecCCCCCceEEEeeccc----------chhhhhHHHHHHHHHHHhcCCC
Q 010421 394 LPLYRGTIHPLIPNMAFVGYIES----------VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 394 ~~ly~~~~~~~~pnl~~iG~~~~----------~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+.+..++ .++.||+|++|.... ...+..|..||+.+|+.+.|..
T Consensus 257 i~vd~~~-~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 257 IVIDEAC-RTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred EEECCCC-ccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 4343333 357899999996542 1234689999999999998753
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-23 Score=212.45 Aligned_cols=314 Identities=18% Similarity=0.136 Sum_probs=183.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcccc----CCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYEF----TDFPWPNRDDPGF 73 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 73 (511)
|...+||+||||||+|+++|..| .|.+|+|+|+. .+||+|... +.|.-.+......+.. ..+.+... ...
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS--GPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC--CCc
Confidence 77789999999999999999999 89999999995 899998652 2232221111111110 01111100 001
Q ss_pred CChHH-------HHHHHH----HHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 74 PSYTE-------ILDYLE----SYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 74 ~~~~~-------~~~yl~----~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
..... +.+++. ...++.++ .+.. .++..++..... +.++.++|.+.++ +..+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~-g~a~~i~~~~~~-----------~~~~~~~v~~~~g---~~~~ 140 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKI--DVFH-GIGRILGPSIFS-----------PMPGTVSVETETG---ENEM 140 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEeCCCCCc-----------CCceEEEEEeCCC---ceEE
Confidence 12222 222232 23334454 4444 355555432000 1133455655443 1237
Q ss_pred EEeCEEEEeecccCCCCCCCCCCCCCCCCcccc-eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 143 YGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEG-QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 143 ~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g-~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
+.||+||+|||. .|..| | +.. +.+ .++++.+.... ...+++|+|||+|.+|+|+|..|++.+.
T Consensus 141 ~~~d~lViATGs---~p~~~--p---~~~-~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~~G~E~A~~l~~~g~ 204 (472)
T PRK05976 141 IIPENLLIATGS---RPVEL--P---GLP-FDGEYVISSDEALSL-------ETLPKSLVIVGGGVIGLEWASMLADFGV 204 (472)
T ss_pred EEcCEEEEeCCC---CCCCC--C---CCC-CCCceEEcchHhhCc-------cccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 899999999994 55443 2 221 112 24554443321 1246899999999999999999998865
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ ||++.|.+. ++|..+ ..
T Consensus 205 ~-----Vtli~~~~~-il~~~~-----------~~--------------------------------------------- 222 (472)
T PRK05976 205 E-----VTVVEAADR-ILPTED-----------AE--------------------------------------------- 222 (472)
T ss_pred e-----EEEEEecCc-cCCcCC-----------HH---------------------------------------------
Confidence 4 999999874 333321 00
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe---CCcE---EEcCCc--eeeccEEEEecCCCCc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW---KGGL---EFEDNT--KLEADVVILCTGYDGK 372 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~---~~~v---~~~dG~--~~~~D~VI~aTG~~~~ 372 (511)
+...+.+.+++.+|+++.+. +.+++ ++++ .+.+|+ ++++|.||+|||.+++
T Consensus 223 --------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 223 --------------------LSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred --------------------HHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 00011123455567777765 66665 3443 235674 5899999999999998
Q ss_pred ccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 373 KKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
...+. .+...+. ..++.+.+...+ .++.||+|++|.... +.....+..|++.++..+.|.
T Consensus 283 ~~~l~---l~~~~~~-~~~g~i~Vd~~l-~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 283 TEGIG---LENTDID-VEGGFIQIDDFC-QTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGK 343 (472)
T ss_pred CCCCC---chhcCce-ecCCEEEECCCc-ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 65321 1111111 122334343332 355799999998754 334578999999999988775
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=220.45 Aligned_cols=310 Identities=15% Similarity=0.156 Sum_probs=179.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc-cCCCCCCCCC--CCCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE-FTDFPWPNRD--DPGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 77 (511)
.+||+||||||+|+++|..| .|.+|+|+|++ .+||+|... .+|...+..+..... ....+++... .......+
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 58999999999999999999 89999999996 899998652 233322211111100 0111110000 01112344
Q ss_pred HHHHHHHHHHHhcC-------CCC--ceEe-eeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 78 EILDYLESYAKHFD-------VFK--CVRF-NSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 78 ~~~~yl~~~~~~~~-------~~~--~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
.+.++.+...+++. +.. .+.+ ..++..++ ...+.|...++ ....+.||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~------------------~~~~~v~~~~g---~~~~~~~d~ 235 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKD------------------DQTLIVRLNDG---GERVVAFDR 235 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEec------------------CCEEEEEeCCC---ceEEEEcCE
Confidence 55544443332211 000 1111 22333222 23344544332 223689999
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCc
Q 010421 148 LVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQP 227 (511)
Q Consensus 148 vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~ 227 (511)
||+||| +.|..|.+| |.+.. ..+++.+... ....+++|+|||+|.+|+|+|..|++.+.+
T Consensus 236 lviAtG---s~p~~p~i~---g~~~~--~~~~~~~~~~-------~~~~~~~vvViGgG~ig~E~A~~l~~~g~~----- 295 (561)
T PRK13748 236 CLIATG---ASPAVPPIP---GLKET--PYWTSTEALV-------SDTIPERLAVIGSSVVALELAQAFARLGSK----- 295 (561)
T ss_pred EEEcCC---CCCCCCCCC---CCCcc--ceEccHHHhh-------cccCCCeEEEECCCHHHHHHHHHHHHcCCE-----
Confidence 999999 568888888 65432 1233222111 123568999999999999999999988754
Q ss_pred EEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCC
Q 010421 228 CTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPD 307 (511)
Q Consensus 228 Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 307 (511)
|+++.|.. +++..+ . ..
T Consensus 296 Vtli~~~~--~l~~~d-------~----~~-------------------------------------------------- 312 (561)
T PRK13748 296 VTILARST--LFFRED-------P----AI-------------------------------------------------- 312 (561)
T ss_pred EEEEecCc--cccccC-------H----HH--------------------------------------------------
Confidence 99999853 333221 0 00
Q ss_pred CccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--CcEEEc-CCceeeccEEEEecCCCCcccccccCCCcc
Q 010421 308 HPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GGLEFE-DNTKLEADVVILCTGYDGKKKLKAFLPEPF 383 (511)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~v~~~-dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~ 383 (511)
...+.+.+++.+|+++.+. +.+++. +.+.+. ++.++++|.||+|+|++|+..++.. .-
T Consensus 313 ---------------~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l---~~ 374 (561)
T PRK13748 313 ---------------GEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLAL---DA 374 (561)
T ss_pred ---------------HHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCc---hh
Confidence 0011123445567776654 666643 233222 3336999999999999999754211 11
Q ss_pred cccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 384 QSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 384 ~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
.++..++++.+.+..++ .++.||+|++|..... ...+.+..|++.++..+.|.
T Consensus 375 ~g~~~~~~g~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 375 AGVTVNAQGAIVIDQGM-RTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred cCceECCCCCEeECCCc-ccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 11111333444444443 3578999999987643 34567889999999998764
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=215.44 Aligned_cols=310 Identities=18% Similarity=0.185 Sum_probs=181.3
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----ccCCCCCCCCCCCCCC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----EFTDFPWPNRDDPGFP 74 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 74 (511)
++.+||+|||||++|+++|..| .|.+|+|+|+ +.+||+|... .+|...+......+ .+..+.+... ....
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~--~~~~ 77 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD--GPKI 77 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC--CCcc
Confidence 1458999999999999999999 8999999999 7899998751 22221111111000 1122222111 2345
Q ss_pred ChHHHHHHHHHHHHhcCCCCce-E--ee-eEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEE
Q 010421 75 SYTEILDYLESYAKHFDVFKCV-R--FN-SKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVV 150 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i-~--~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVl 150 (511)
+..++.++++...+++.. .+ . +. ..|.-+..... . .+.+++.+ ++. ++.||+||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~g~~~----------~---~~~~~v~v-~~~-----~~~~d~lIi 136 (460)
T PRK06292 78 DFKKVMARVRRERDRFVG--GVVEGLEKKPKIDKIKGTAR----------F---VDPNTVEV-NGE-----RIEAKNIVI 136 (460)
T ss_pred CHHHHHHHHHHHHHHHhc--chHHHHHhhCCCEEEEEEEE----------E---ccCCEEEE-CcE-----EEEeCEEEE
Confidence 677888888777765432 11 0 00 01111110000 0 11124544 222 789999999
Q ss_pred eecccCCCCCCCCCCCCCCCCcccc-eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEE
Q 010421 151 CTGKYGDVPIIPAFPNNKGPEVFEG-QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCT 229 (511)
Q Consensus 151 AtG~~~~~p~~p~~~~~~g~~~~~g-~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vt 229 (511)
|||. . .|.+| |.....+ .++++.+...+ ...+++|+|||+|.+|+|+|..|++.+.+ |+
T Consensus 137 ATGs---~--~p~ip---g~~~~~~~~~~~~~~~~~~-------~~~~k~v~VIGgG~~g~E~A~~l~~~g~~-----Vt 196 (460)
T PRK06292 137 ATGS---R--VPPIP---GVWLILGDRLLTSDDAFEL-------DKLPKSLAVIGGGVIGLELGQALSRLGVK-----VT 196 (460)
T ss_pred eCCC---C--CCCCC---CCcccCCCcEECchHHhCc-------cccCCeEEEECCCHHHHHHHHHHHHcCCc-----EE
Confidence 9994 4 34444 3322112 24443333221 23578999999999999999999988764 99
Q ss_pred EEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCc
Q 010421 230 MIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHP 309 (511)
Q Consensus 230 l~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 309 (511)
++.|.+. ++|..+ . . +.
T Consensus 197 li~~~~~-~l~~~d-------~----~----------------------------~~----------------------- 213 (460)
T PRK06292 197 VFERGDR-ILPLED-------P----E----------------------------VS----------------------- 213 (460)
T ss_pred EEecCCC-cCcchh-------H----H----------------------------HH-----------------------
Confidence 9999875 333211 0 0 00
Q ss_pred cccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC---cEEE--cCC--ceeeccEEEEecCCCCcccccccCCC
Q 010421 310 FEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG---GLEF--EDN--TKLEADVVILCTGYDGKKKLKAFLPE 381 (511)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~---~v~~--~dG--~~~~~D~VI~aTG~~~~~~~~~~~~~ 381 (511)
+.+.+.+++. |+++.+. +.+++.+ ++++ .+| +++++|.||+|+|.+|+...+.+
T Consensus 214 --------------~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l--- 275 (460)
T PRK06292 214 --------------KQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGL--- 275 (460)
T ss_pred --------------HHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCc---
Confidence 0011234444 6666554 6666532 3443 344 45899999999999999764211
Q ss_pred cccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 382 PFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 382 ~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
.-.++..++++.+.+...+ .++.||+|++|..... .....|..|++.+|..+.+.
T Consensus 276 ~~~g~~~~~~g~i~vd~~~-~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 276 ENTGIELDERGRPVVDEHT-QTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred HhhCCEecCCCcEeECCCc-ccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 1011111333444444443 3478999999987653 33568999999999998873
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=214.58 Aligned_cols=307 Identities=18% Similarity=0.152 Sum_probs=174.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc------cCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE------FTDFPWPNRDDP 71 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 71 (511)
|+ .+||+||||||+|++||..+ .|.+|+|+|+++.+||++... +.|.-.+-.....+. ...+.... .
T Consensus 1 m~-~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~---~ 76 (466)
T PRK06115 1 MA-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV---K 76 (466)
T ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc---c
Confidence 63 58999999999999999999 899999999878899987541 333322211111111 00110000 0
Q ss_pred CCCChHHHHHHHHHH-----------HHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCce
Q 010421 72 GFPSYTEILDYLESY-----------AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSI 140 (511)
Q Consensus 72 ~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (511)
.-....++.++.... .++.++ .+..+ +. ++.. ..+..|...+ ++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~a-~~~~-----------------~~~v~v~~~~---g~~ 132 (466)
T PRK06115 77 PTLNLAQMMKQKDESVEALTKGVEFLFRKNKV--DWIKG-WG-RLDG-----------------VGKVVVKAED---GSE 132 (466)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EE-EEcc-----------------CCEEEEEcCC---Cce
Confidence 011222222222211 222222 22222 11 1111 2223333222 222
Q ss_pred eEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhc
Q 010421 141 QRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESN 220 (511)
Q Consensus 141 ~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~ 220 (511)
.++.||+||||||+ .|. .+| |.+.....++++.+.... ...+++|+|||+|.+|+|+|..+++.+
T Consensus 133 ~~~~~d~lVIATGs---~p~--~ip---g~~~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~ig~E~A~~l~~~G 197 (466)
T PRK06115 133 TQLEAKDIVIATGS---EPT--PLP---GVTIDNQRIIDSTGALSL-------PEVPKHLVVIGAGVIGLELGSVWRRLG 197 (466)
T ss_pred EEEEeCEEEEeCCC---CCC--CCC---CCCCCCCeEECHHHHhCC-------ccCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 36899999999995 443 244 432111234544433321 135799999999999999999999887
Q ss_pred CCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcc
Q 010421 221 QGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLL 300 (511)
Q Consensus 221 ~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
.+ ||++.|.+. ++|..+ ..
T Consensus 198 ~~-----Vtlie~~~~-il~~~d-----------~~-------------------------------------------- 216 (466)
T PRK06115 198 AQ-----VTVVEYLDR-ICPGTD-----------TE-------------------------------------------- 216 (466)
T ss_pred Ce-----EEEEeCCCC-CCCCCC-----------HH--------------------------------------------
Confidence 64 999998764 333221 00
Q ss_pred cCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--CcE--EEc---CC--ceeeccEEEEecCCC
Q 010421 301 KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GGL--EFE---DN--TKLEADVVILCTGYD 370 (511)
Q Consensus 301 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~v--~~~---dG--~~~~~D~VI~aTG~~ 370 (511)
+.+.+.+.+++.+|+++.+. +.++++ +++ .+. +| +++++|.||+|+|++
T Consensus 217 ---------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 217 ---------------------TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred ---------------------HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 00011123445567877764 667754 343 232 23 469999999999999
Q ss_pred CcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 371 GKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
|+...+. .+..++..+..+ +.+..+ ..++.||+|++|..... ...+.|..||+.+|..+.|.
T Consensus 276 pn~~~l~---~~~~g~~~~~~G-~~vd~~-~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 276 PYTQGLG---LETVGLETDKRG-MLANDH-HRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred cccccCC---cccccceeCCCC-EEECCC-eecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9875321 111111112222 223222 24678999999987753 34578999999999998775
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=214.33 Aligned_cols=313 Identities=16% Similarity=0.128 Sum_probs=178.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPS 75 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (511)
..+||+|||||++|+++|..| .|.+|+|+|+.+.+||+|... +.|...+..+..... .+.+.++... .. ..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~-~~ 92 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVA-PS-ID 92 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCC-Cc-cC
Confidence 358999999999999999999 899999999988999999762 234332211111111 1111111100 11 12
Q ss_pred hHHHHHHHHHHHHhcC---CCCceEeeeEEEE----EEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEE
Q 010421 76 YTEILDYLESYAKHFD---VFKCVRFNSKVVE----VRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFL 148 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~----v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 148 (511)
...+..+......+.. ....+..+..|.- .... +.+.+.|...++ +..++.||+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~---------------~~~~v~v~~~~g---~~~~~~~d~l 154 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFK---------------DGNTLVVRLHDG---GERVLAADRC 154 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEe---------------cCCEEEEEeCCC---ceEEEEeCEE
Confidence 3333322222221110 0000010101111 1221 134455554333 2336899999
Q ss_pred EEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 010421 149 VVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPC 228 (511)
Q Consensus 149 VlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~V 228 (511)
||||| +.|..|.+| |.+.. ..+++.+... ....+++|+|||+|.+|+|+|..+++.+.+ |
T Consensus 155 ViATG---s~p~~p~i~---G~~~~--~~~~~~~~l~-------~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~-----V 214 (479)
T PRK14727 155 LIATG---STPTIPPIP---GLMDT--PYWTSTEALF-------SDELPASLTVIGSSVVAAEIAQAYARLGSR-----V 214 (479)
T ss_pred EEecC---CCCCCCCCC---CcCcc--ceecchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHHcCCE-----E
Confidence 99999 568888888 65321 2233222111 113468999999999999999999987754 9
Q ss_pred EEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCC
Q 010421 229 TMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDH 308 (511)
Q Consensus 229 tl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 308 (511)
+++.|.. +++..+ ... .
T Consensus 215 tlv~~~~--~l~~~d-------~~~--------------------------------~---------------------- 231 (479)
T PRK14727 215 TILARST--LLFRED-------PLL--------------------------------G---------------------- 231 (479)
T ss_pred EEEEcCC--CCCcch-------HHH--------------------------------H----------------------
Confidence 9998742 333221 000 0
Q ss_pred ccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCcEEEc-CCceeeccEEEEecCCCCcccccccCCCccc
Q 010421 309 PFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGGLEFE-DNTKLEADVVILCTGYDGKKKLKAFLPEPFQ 384 (511)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~v~~~-dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~ 384 (511)
+.+.+.+++.+|+++.+. +.+++ ++++.+. ++.++++|.||+|+|+.++..++. ....
T Consensus 232 ---------------~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~---l~~~ 293 (479)
T PRK14727 232 ---------------ETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLN---LEAV 293 (479)
T ss_pred ---------------HHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCC---chhh
Confidence 011123444556666654 55554 3333322 233689999999999999876421 1111
Q ss_pred ccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 385 SLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 385 ~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
++..++++.+.+...+ .++.||+|++|..... ...+.+..|++.+|..+.|.
T Consensus 294 g~~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 294 GVTTDTSGAIVVNPAM-ETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred CceecCCCCEEECCCe-ecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 1111334445554443 3578999999987653 44578889999999999874
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=211.23 Aligned_cols=311 Identities=18% Similarity=0.198 Sum_probs=181.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcC------CCCcCccccCC-CcCceeccCCCCccc-c----CCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA------SDSIGGIWKSC-SYNSTKLQSHRSDYE-F----TDFPWP 66 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~------~~~~GG~w~~~-~~~~~~~~~~~~~~~-~----~~~~~~ 66 (511)
|...+||+||||||+|++||.++ .|.+|+|+|+ ...+||+|... .+|...+......+. + ..+..+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 66678999999999999999999 8999999998 36789988652 223211111111110 0 111111
Q ss_pred CCCCCCCCChHHHHHHH-----------HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC
Q 010421 67 NRDDPGFPSYTEILDYL-----------ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH 135 (511)
Q Consensus 67 ~~~~~~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (511)
.. ..-...+++.+.. +...+..++ .+. ..++..++.. .+.++|.+...
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~g~~~~~~~~----------------~~~~~v~v~~~ 139 (475)
T PRK06327 81 VD--GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKI--TVL-KGRGSFVGKT----------------DAGYEIKVTGE 139 (475)
T ss_pred CC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEecCC----------------CCCCEEEEecC
Confidence 00 0011222333222 222333343 233 3345444431 33567877543
Q ss_pred CCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccce-EEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHH
Q 010421 136 NSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQ-VLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAK 214 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~-~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~ 214 (511)
+ ++ ++.||+||+|||+ .|..| | +.. +.+. ++++..... ....+++|+|||+|.+|+|+|.
T Consensus 140 ~-~~--~~~~d~lViATGs---~p~~~--p---~~~-~~~~~~~~~~~~~~-------~~~~~~~vvVvGgG~~g~E~A~ 200 (475)
T PRK06327 140 D-ET--VITAKHVIIATGS---EPRHL--P---GVP-FDNKIILDNTGALN-------FTEVPKKLAVIGAGVIGLELGS 200 (475)
T ss_pred C-Ce--EEEeCEEEEeCCC---CCCCC--C---CCC-CCCceEECcHHHhc-------ccccCCeEEEECCCHHHHHHHH
Confidence 2 22 7899999999995 45433 2 211 1222 333222222 1235689999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 010421 215 ECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLL 294 (511)
Q Consensus 215 ~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (511)
.+++.+.+ ||++.|++.. +|..+ . .
T Consensus 201 ~l~~~g~~-----Vtli~~~~~~-l~~~d-------~----~-------------------------------------- 225 (475)
T PRK06327 201 VWRRLGAE-----VTILEALPAF-LAAAD-------E----Q-------------------------------------- 225 (475)
T ss_pred HHHHcCCe-----EEEEeCCCcc-CCcCC-------H----H--------------------------------------
Confidence 99888654 9999998752 22211 0 0
Q ss_pred ccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcC--C--ceeeccEEEE
Q 010421 295 WKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFED--N--TKLEADVVIL 365 (511)
Q Consensus 295 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~d--G--~~~~~D~VI~ 365 (511)
+.+.+.+.+++.+|+++.+. |.+++.+ + +.+.+ | +++++|.||+
T Consensus 226 ---------------------------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~ 278 (475)
T PRK06327 226 ---------------------------VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIV 278 (475)
T ss_pred ---------------------------HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEE
Confidence 00011123445567777764 6677543 3 44444 3 4589999999
Q ss_pred ecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 366 CTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 366 aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
|||++|+...+. ....++..+.++.+.+...+ .++.||+|++|.... +.....|..|++.+|..+.|.
T Consensus 279 a~G~~p~~~~l~---~~~~g~~~~~~G~i~vd~~~-~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 279 SIGRVPNTDGLG---LEAVGLKLDERGFIPVDDHC-RTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred ccCCccCCCCCC---cHhhCceeCCCCeEeECCCC-ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCC
Confidence 999999975321 11111112333444454433 357899999998754 344578999999999999874
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-24 Score=221.17 Aligned_cols=301 Identities=18% Similarity=0.159 Sum_probs=176.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcC---------CCCcCccccCC-CcCceeccCCCCccc----cCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA---------SDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPN 67 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~---------~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~ 67 (511)
.+||+|||||++|+.+|..+ .|.+|+|+|+ ...+||++-.. +.|.-.+........ ...+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 47999999999999999999 8999999996 25688887651 222211111000000 01111110
Q ss_pred CCCCCCCChHHH-----------HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC
Q 010421 68 RDDPGFPSYTEI-----------LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN 136 (511)
Q Consensus 68 ~~~~~~~~~~~~-----------~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (511)
.. ..-.....+ .+++....++.++ .+.. .++..++. . +|.+ +++
T Consensus 159 ~~-~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~-G~a~~vd~-----------------~---~V~v-~G~ 213 (558)
T PLN02546 159 ET-EPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIE-GRGKIVDP-----------------H---TVDV-DGK 213 (558)
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-eEEEEccC-----------------C---EEEE-CCE
Confidence 00 001122222 2333333344444 3332 23333332 1 3544 222
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHH
Q 010421 137 SNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216 (511)
Q Consensus 137 ~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l 216 (511)
.+.||+|||||| +.|..|++| |.+. ++++.+... ....+++|+|||+|.+|+|+|..|
T Consensus 214 -----~~~~D~LVIATG---s~p~~P~Ip---G~~~----v~~~~~~l~-------~~~~~k~V~VIGgG~iGvE~A~~L 271 (558)
T PLN02546 214 -----LYTARNILIAVG---GRPFIPDIP---GIEH----AIDSDAALD-------LPSKPEKIAIVGGGYIALEFAGIF 271 (558)
T ss_pred -----EEECCEEEEeCC---CCCCCCCCC---Chhh----ccCHHHHHh-------ccccCCeEEEECCCHHHHHHHHHH
Confidence 689999999999 578888888 6542 333333222 123578999999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhcc
Q 010421 217 AESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWK 296 (511)
Q Consensus 217 ~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
+..+.+ |+++.|.+. ++|..+ . . +.
T Consensus 272 ~~~g~~-----Vtlv~~~~~-il~~~d-------~----~----------------------------~~---------- 296 (558)
T PLN02546 272 NGLKSD-----VHVFIRQKK-VLRGFD-------E----E----------------------------VR---------- 296 (558)
T ss_pred HhcCCe-----EEEEEeccc-cccccC-------H----H----------------------------HH----------
Confidence 987654 999998764 223221 0 0 00
Q ss_pred CCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc-EE--EcCCceeeccEEEEecCCC
Q 010421 297 LPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG-LE--FEDNTKLEADVVILCTGYD 370 (511)
Q Consensus 297 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~-v~--~~dG~~~~~D~VI~aTG~~ 370 (511)
..+.+.+++.+|+++.+. +.++++ ++ +. +.+++.+.+|.||+|+|++
T Consensus 297 ---------------------------~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 297 ---------------------------DFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred ---------------------------HHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 001123445567777665 666642 23 33 3445445699999999999
Q ss_pred CcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 371 GKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
++..++. ..-.++..+.++.+.+..++ .++.||+|++|..... ...+.+..|++.+|..+.|.
T Consensus 350 Pnt~~L~---le~~gl~~d~~G~I~VD~~l-~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 350 PNTKNLG---LEEVGVKMDKNGAIEVDEYS-RTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred cCCCcCC---hhhcCCcCCCCCcEeECCCc-eeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9976421 01111111333445444433 3578999999987653 34578999999999998774
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=213.58 Aligned_cols=168 Identities=23% Similarity=0.331 Sum_probs=114.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+||||||+||++|..| .|++|+|||+.+.+||.+.+ ..| .+.+ +.+++.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~-gip--------------~~~l---------~~~~~~ 194 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY-GIP--------------EFRL---------PKETVV 194 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee-cCC--------------CccC---------CccHHH
Confidence 458999999999999999999 89999999999999998754 221 1111 123456
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+..+.++++++ .+++++.|.. .+++.+.. ..+.||+||+|||+. .|+
T Consensus 195 ~~~~~~~~~~gv--~i~~~~~v~~------------------------~v~~~~~~----~~~~~d~viiAtGa~--~~~ 242 (464)
T PRK12831 195 KKEIENIKKLGV--KIETNVVVGK------------------------TVTIDELL----EEEGFDAVFIGSGAG--LPK 242 (464)
T ss_pred HHHHHHHHHcCC--EEEcCCEECC------------------------cCCHHHHH----hccCCCEEEEeCCCC--CCC
Confidence 666677777888 7888775521 12222211 135699999999963 577
Q ss_pred CCCCCCCCCCCcccceEEeccccCccch-------hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDK-------EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~-------~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
.|++| |.+. . .++.+.++..... ........+|+|+|||+|.+|+|+|..+.+.+.+ ||++.|
T Consensus 243 ~l~ip---G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~-----Vtlv~r 312 (464)
T PRK12831 243 FMGIP---GENL-N-GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE-----VHIVYR 312 (464)
T ss_pred CCCCC---CcCC-c-CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE-----EEEEee
Confidence 78888 5442 1 2444433321000 0001235789999999999999999999998764 999998
Q ss_pred cCc
Q 010421 234 TTH 236 (511)
Q Consensus 234 ~~~ 236 (511)
+..
T Consensus 313 ~~~ 315 (464)
T PRK12831 313 RSE 315 (464)
T ss_pred cCc
Confidence 763
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=209.49 Aligned_cols=288 Identities=16% Similarity=0.150 Sum_probs=179.0
Q ss_pred eEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+|+|||||++|+.+|.+| .+.+|+|+|+++.. .|... ++.. .......+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~-------~~~~~---------------~~~~-~~g~~~~~~~~ 57 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT-------PYSGM---------------LPGM-IAGHYSLDEIR 57 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC-------cccch---------------hhHH-HheeCCHHHhc
Confidence 489999999999999998 35789999997653 22110 0000 01112334555
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
..+.++++++++ ++.. .+|++++.. + . +|.+.++. ++.||+||+||| ..|.
T Consensus 58 ~~~~~~~~~~gv--~~~~-~~v~~id~~----------------~-~-~V~~~~g~-----~~~yD~LviAtG---~~~~ 108 (364)
T TIGR03169 58 IDLRRLARQAGA--RFVI-AEATGIDPD----------------R-R-KVLLANRP-----PLSYDVLSLDVG---STTP 108 (364)
T ss_pred ccHHHHHHhcCC--EEEE-EEEEEEecc----------------c-C-EEEECCCC-----cccccEEEEccC---CCCC
Confidence 566677777777 5554 589999873 1 1 57776654 689999999999 5677
Q ss_pred CCCCCCCCCCCcccceEEecccc---Cc----cchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC-CCCCcEEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDY---CK----LDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG-PEGQPCTMIV 232 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~---~~----~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~-~~~~~Vtl~~ 232 (511)
.|.+| |.... ++..... .. .. +.......+++|+|||+|.+|+|+|..|+..... ....+|+++
T Consensus 109 ~~~i~---g~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li- 180 (364)
T TIGR03169 109 LSGVE---GAADL---AVPVKPIENFLARWEALL-ESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI- 180 (364)
T ss_pred CCCCC---ccccc---ccccCCHHHHHHHHHHHH-HHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-
Confidence 88888 53211 1111111 00 00 0000012467999999999999999999864211 001358988
Q ss_pred ecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccc
Q 010421 233 RTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEE 312 (511)
Q Consensus 233 R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 312 (511)
+.+. +++... ..
T Consensus 181 ~~~~-~l~~~~-----------~~-------------------------------------------------------- 192 (364)
T TIGR03169 181 AGAS-LLPGFP-----------AK-------------------------------------------------------- 192 (364)
T ss_pred eCCc-ccccCC-----------HH--------------------------------------------------------
Confidence 4332 222211 00
Q ss_pred ccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCC
Q 010421 313 DYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPS 391 (511)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
+.+.+.+.+++.+|+++.+. +.++++++|++++|+++++|.||+|+|.+++..+.. . ++..+..
T Consensus 193 ---------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-~-----gl~~~~~ 257 (364)
T TIGR03169 193 ---------VRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAE-S-----GLPLDED 257 (364)
T ss_pred ---------HHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHHHH-c-----CCCcCCC
Confidence 00111234556678888875 778888889999999999999999999998743321 1 1111334
Q ss_pred CcccceeeecCCCCCceEEEeecccc------hhhhhHHHHHHHHHHHhcC
Q 010421 392 GLLPLYRGTIHPLIPNMAFVGYIESV------SNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 392 ~~~~ly~~~~~~~~pnl~~iG~~~~~------~~~~~~e~qa~~~a~~l~g 436 (511)
+.+.+...+..++.||+|++|..... .....|..||+.+|+.+..
T Consensus 258 g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 258 GFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 44555554444588999999976532 1234688899988887754
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=225.89 Aligned_cols=287 Identities=16% Similarity=0.187 Sum_probs=182.9
Q ss_pred EEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 7 IAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 7 v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
|+|||+|++|+.+|.+| .+++|+|||+++.++ |..+.+ +. +. ....+.+++..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~----~l---------~g~~~~~~l~~ 58 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SS----VL---------QGEADLDDITL 58 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cH----HH---------CCCCCHHHccC
Confidence 68999999999999988 357899999987762 221111 00 00 00112233332
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
...++.++.++ .++++++|+.|+.. .++|.+.++. ++.||+||+||| +.|+.
T Consensus 59 ~~~~~~~~~gv--~~~~g~~V~~Id~~------------------~k~V~~~~g~-----~~~yD~LVlATG---s~p~~ 110 (785)
T TIGR02374 59 NSKDWYEKHGI--TLYTGETVIQIDTD------------------QKQVITDAGR-----TLSYDKLILATG---SYPFI 110 (785)
T ss_pred CCHHHHHHCCC--EEEcCCeEEEEECC------------------CCEEEECCCc-----EeeCCEEEECCC---CCcCC
Confidence 33344556777 78889999999872 1357666554 789999999999 46888
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|++| |.+.. + ++......+.... ......+++|+|||+|.+|+|+|..|++.+.. |+++.+.+.+ +++
T Consensus 111 p~ip---G~~~~-~-v~~~rt~~d~~~i-~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~-----Vtvv~~~~~l-l~~ 178 (785)
T TIGR02374 111 LPIP---GADKK-G-VYVFRTIEDLDAI-MAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMD-----VSVIHHAPGL-MAK 178 (785)
T ss_pred CCCC---CCCCC-C-EEEeCCHHHHHHH-HHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe-----EEEEccCCch-hhh
Confidence 8888 65421 1 2222222111100 01223678999999999999999999988764 9999987753 221
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
.. +. ....
T Consensus 179 ~l------d~--------------------------------~~~~---------------------------------- 186 (785)
T TIGR02374 179 QL------DQ--------------------------------TAGR---------------------------------- 186 (785)
T ss_pred hc------CH--------------------------------HHHH----------------------------------
Confidence 10 00 0000
Q ss_pred cCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccc
Q 010421 322 MPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPL 396 (511)
Q Consensus 322 ~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (511)
.+.+.+++.+|+++.+. +.++.++ +|+++||+++++|.||+|+|++|+..+....+.+. ++.+.+
T Consensus 187 ---~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~-------~ggI~V 256 (785)
T TIGR02374 187 ---LLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKV-------NRGIIV 256 (785)
T ss_pred ---HHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCcc-------CCCEEE
Confidence 01123445567777765 6666543 37889999999999999999999976543221111 123333
Q ss_pred eeeecCCCCCceEEEeecccc-----hhhhhHHHHHHHHHHHhcCCC
Q 010421 397 YRGTIHPLIPNMAFVGYIESV-----SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 397 y~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~~ 438 (511)
...+ .++.||+|++|..... ..+..+..||+.+|..|.|..
T Consensus 257 d~~~-~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 257 NDSM-QTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred CCCc-ccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 3332 3578999999976432 123457789999999998854
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=207.99 Aligned_cols=311 Identities=14% Similarity=0.078 Sum_probs=176.6
Q ss_pred CCeEEEECCCHHHHHHHHhccCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCChHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 78 (511)
.+||+|||+|++|..+|..+.|.+|+|+|+ ..+||++... +.|.-.+-.....+. ...+.+... ..-....+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~--~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE--IDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHHCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC--CCccCHHH
Confidence 589999999999999876669999999998 6799987651 233222111111110 011111100 11123455
Q ss_pred HHHHHHH-HHHhcCCC-CceEee---eEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 79 ILDYLES-YAKHFDVF-KCVRFN---SKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 79 ~~~yl~~-~~~~~~~~-~~i~~~---~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+.++... ..+...-. ....+. ..|+-+.. .+.+ .+.++|.+.++. ++.||+||+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g----------~~~~---~~~~~V~~~~g~-----~~~~d~lIiATG 140 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDG----------HARF---VGPRTLRTGDGE-----EITGDQIVIAAG 140 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEE----------EEEE---ecCCEEEECCCc-----EEEeCEEEEEEC
Confidence 5555433 22211000 000000 01111110 0000 223457665443 689999999999
Q ss_pred ccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 154 KYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 154 ~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
+.|..|++. +... -.+..+.+...+ ...+++|+|||+|.+|+|+|..|++.+.+ |+++.+
T Consensus 141 ---s~p~~p~~~---~~~~--~~~~~~~~~~~l-------~~~~k~vvVIGgG~ig~E~A~~l~~~G~~-----Vtli~~ 200 (452)
T TIGR03452 141 ---SRPYIPPAI---ADSG--VRYHTNEDIMRL-------PELPESLVIVGGGYIAAEFAHVFSALGTR-----VTIVNR 200 (452)
T ss_pred ---CCCCCCCCC---CCCC--CEEEcHHHHHhh-------hhcCCcEEEECCCHHHHHHHHHHHhCCCc-----EEEEEc
Confidence 467777543 2111 123333332221 12478999999999999999999988764 999999
Q ss_pred cCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccc
Q 010421 234 TTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEED 313 (511)
Q Consensus 234 ~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 313 (511)
.+. ++|..+ ... ...
T Consensus 201 ~~~-ll~~~d-------~~~--------------------------------~~~------------------------- 215 (452)
T TIGR03452 201 STK-LLRHLD-------EDI--------------------------------SDR------------------------- 215 (452)
T ss_pred cCc-cccccC-------HHH--------------------------------HHH-------------------------
Confidence 775 222211 000 000
Q ss_pred cccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCcccccccCCCccccccc
Q 010421 314 YASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLE 388 (511)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~ 388 (511)
+.+.++. +|+++.+. +.+++. ++ +.+.+|+++++|.||+|||++|+..++.. .-.++..
T Consensus 216 ------------l~~~~~~-gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~---~~~gl~~ 279 (452)
T TIGR03452 216 ------------FTEIAKK-KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDA---EAAGVEV 279 (452)
T ss_pred ------------HHHHHhc-CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCc---hhcCeeE
Confidence 0011222 36666553 666652 33 45568888999999999999999765321 1111212
Q ss_pred CCCCcccceeeecCCCCCceEEEeecccch-hhhhHHHHHHHHHHHhcCC
Q 010421 389 HPSGLLPLYRGTIHPLIPNMAFVGYIESVS-NLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 389 ~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 437 (511)
++++.+.+..++. ++.||+|++|...... ..+.+..|++.+|..+.+.
T Consensus 280 ~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 280 DEDGRIKVDEYGR-TSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred CCCCcEeeCCCcc-cCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 3344455555443 7889999999877543 3468999999999998764
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=213.29 Aligned_cols=280 Identities=22% Similarity=0.275 Sum_probs=173.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||++|+++|..| .|++|+|+|+.+.+||.+.. ..| .+....++.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~-gip------------------------~~~~~~~~~ 193 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY-GIP------------------------EFRLPKDIV 193 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec-cCC------------------------CccCCHHHH
Confidence 357999999999999999999 89999999999999887654 111 111234666
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+....++++++ .+++++.|.. .+++.+. .+.||+||+|||.. .|+
T Consensus 194 ~~~~~~l~~~gv--~~~~~~~v~~------------------------~v~~~~~------~~~~d~vvlAtGa~--~~~ 239 (457)
T PRK11749 194 DREVERLLKLGV--EIRTNTEVGR------------------------DITLDEL------RAGYDAVFIGTGAG--LPR 239 (457)
T ss_pred HHHHHHHHHcCC--EEEeCCEECC------------------------ccCHHHH------HhhCCEEEEccCCC--CCC
Confidence 666677777777 6777765521 1222111 36799999999964 466
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhh--hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEA--ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~--~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
.+.+| |.+. . .++++.++....... ......+++|+|||+|.+|+|+|..+.+.+. ++|+++.|++...
T Consensus 240 ~~~i~---G~~~-~-gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~----~~Vtlv~~~~~~~ 310 (457)
T PRK11749 240 FLGIP---GENL-G-GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGA----ESVTIVYRRGREE 310 (457)
T ss_pred CCCCC---CccC-C-CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCC----CeEEEeeecCccc
Confidence 66777 5432 1 245544432211000 0122368999999999999999999998765 2599999976533
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
+|... +
T Consensus 311 ~~~~~---------------------------------------~----------------------------------- 316 (457)
T PRK11749 311 MPASE---------------------------------------E----------------------------------- 316 (457)
T ss_pred CCCCH---------------------------------------H-----------------------------------
Confidence 32211 0
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCCc-----EEEc-------------------CCceeeccEEEEecCCCCcc
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG-----LEFE-------------------DNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~-----v~~~-------------------dG~~~~~D~VI~aTG~~~~~ 373 (511)
..+.+++.+|+++.+. +.++.+++ |++. +++++++|.||+|+|++++.
T Consensus 317 -------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 317 -------EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred -------HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 0011222334444332 33332221 3321 23459999999999999986
Q ss_pred cccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhc
Q 010421 374 KLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLID 435 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~ 435 (511)
.+.. ...++..+..+.+.+......++.|++|++|..... .....|..|++.+|..+.
T Consensus 390 ~l~~----~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 390 LILS----TTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred hhhc----cccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 5421 001111123344444442345678999999987643 345678888888887653
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=212.11 Aligned_cols=314 Identities=14% Similarity=0.138 Sum_probs=180.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPS 75 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (511)
..+||+|||||++|+.||..+ .|.+|+|+|++ .+||++... +.|.-.+-....... ...+.+.. ..-..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~---~~~~d 122 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT---QFSFN 122 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc---cCccC
Confidence 357999999999999999999 89999999995 799987541 233322221111111 00111110 00112
Q ss_pred hHHHHHHH-----------HHHHHhcCCCCceEeee-EEEE-----E---EEcCCCCcccCCCCCCCCCCCceEEEEE--
Q 010421 76 YTEILDYL-----------ESYAKHFDVFKCVRFNS-KVVE-----V---RFTGSLETTDSGGNLLPAGHPVWEVAVQ-- 133 (511)
Q Consensus 76 ~~~~~~yl-----------~~~~~~~~~~~~i~~~~-~V~~-----v---~~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 133 (511)
...+.+.. +...++.++ .+..+. ++.+ | ..... ++.. ..++..+|...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~G~a~f~~~~~v~v~~~~~~~~-------~~~~-~~~~~~~v~~~~~ 192 (561)
T PTZ00058 123 LPLLVERRDKYIRRLNDIYRQNLKKDNV--EYFEGKGSLLSENQVLIKKVSQVDG-------EADE-SDDDEVTIVSAGV 192 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCc--EEEEEEEEEecCCEEEeeccccccc-------cccc-cccccceeeeccc
Confidence 22222222 222333444 333332 1111 0 00000 0000 00122222110
Q ss_pred -eCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHH
Q 010421 134 -THNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDL 212 (511)
Q Consensus 134 -~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~ 212 (511)
..++++ ++.||+|||||| +.|..|.+| |.+ .++++.++..+ ..+++|+|||+|.+|+|+
T Consensus 193 ~~~~~g~--~i~ad~lVIATG---S~P~~P~Ip---G~~----~v~ts~~~~~l--------~~pk~VvIIGgG~iGlE~ 252 (561)
T PTZ00058 193 SQLDDGQ--VIEGKNILIAVG---NKPIFPDVK---GKE----FTISSDDFFKI--------KEAKRIGIAGSGYIAVEL 252 (561)
T ss_pred eecCCCc--EEECCEEEEecC---CCCCCCCCC---Cce----eEEEHHHHhhc--------cCCCEEEEECCcHHHHHH
Confidence 011122 699999999999 578888888 654 24555544332 237999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHH
Q 010421 213 AKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESY 292 (511)
Q Consensus 213 a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (511)
|..++..+.+ ||++.|.+. ++|..+ . .
T Consensus 253 A~~l~~~G~~-----Vtli~~~~~-il~~~d-------~----~------------------------------------ 279 (561)
T PTZ00058 253 INVVNRLGAE-----SYIFARGNR-LLRKFD-------E----T------------------------------------ 279 (561)
T ss_pred HHHHHHcCCc-----EEEEEeccc-ccccCC-------H----H------------------------------------
Confidence 9999988765 999999874 334322 0 0
Q ss_pred HhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC---cE--EEcCC-ceeeccEEEE
Q 010421 293 LLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG---GL--EFEDN-TKLEADVVIL 365 (511)
Q Consensus 293 ~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~---~v--~~~dG-~~~~~D~VI~ 365 (511)
+.+.+.+.+++.+|+++.+. +.+++++ ++ .+.++ +++++|.||+
T Consensus 280 -----------------------------i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~Vlv 330 (561)
T PTZ00058 280 -----------------------------IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIY 330 (561)
T ss_pred -----------------------------HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEE
Confidence 00111133455567777665 6666542 23 34454 4699999999
Q ss_pred ecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-----------------------------
Q 010421 366 CTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES----------------------------- 416 (511)
Q Consensus 366 aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~----------------------------- 416 (511)
|||++|+..++. ...... ...++.+.+..++ .++.||+|++|....
T Consensus 331 A~Gr~Pn~~~L~---l~~~~~-~~~~G~I~VDe~l-qTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 405 (561)
T PTZ00058 331 CVGRSPNTEDLN---LKALNI-KTPKGYIKVDDNQ-RTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTS 405 (561)
T ss_pred CcCCCCCccccC---ccccce-ecCCCeEEECcCC-ccCCCCEEEeEeccCccccccccccccccccccccccccccccc
Confidence 999999976432 111111 1233445454443 468899999997755
Q ss_pred ------chhhhhHHHHHHHHHHHhcCC
Q 010421 417 ------VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 417 ------~~~~~~~e~qa~~~a~~l~g~ 437 (511)
....+.|..|++.+|..+.|.
T Consensus 406 ~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 406 GESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred cccccCcCchHHHHHHHHHHHHHHhCC
Confidence 223468999999999998774
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=205.24 Aligned_cols=311 Identities=14% Similarity=0.109 Sum_probs=181.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----ccCCCCCCCC-CCCCCCCh
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----EFTDFPWPNR-DDPGFPSY 76 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~ 76 (511)
++|+|||||++|+.+|..+ .|.+|+|+|++ .+||++... ..|.-.+-...... ....+.+... ........
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 5899999999999999999 79999999995 589987651 22221110000000 0001111100 00011122
Q ss_pred HHHHHHH-----------HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 77 TEILDYL-----------ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 77 ~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
..+.++. ...++++++ .+..+ ++..++...+ .....|...++ ...++.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~~~~~~~--------------~~~v~V~~~~g---~~~~~~~ 140 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGV--RVIAG-RGRLIDPGLG--------------PHRVKVTTADG---GEETLDA 140 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEeecccC--------------CCEEEEEeCCC---ceEEEec
Confidence 3333333 333344455 44433 4444331001 22333433222 2236899
Q ss_pred CEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCC
Q 010421 146 EFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEG 225 (511)
Q Consensus 146 d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 225 (511)
|+||+|||+ .|..|+.+ +.+ ...++++.+.... ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 141 d~lViATGs---~p~~~p~~---~~~--~~~v~~~~~~~~~-------~~~~~~vvVIGgG~ig~E~A~~l~~~g~~--- 202 (466)
T PRK07845 141 DVVLIATGA---SPRILPTA---EPD--GERILTWRQLYDL-------DELPEHLIVVGSGVTGAEFASAYTELGVK--- 202 (466)
T ss_pred CEEEEcCCC---CCCCCCCC---CCC--CceEEeehhhhcc-------cccCCeEEEECCCHHHHHHHHHHHHcCCe---
Confidence 999999994 56655443 221 1135554444332 12468999999999999999999988754
Q ss_pred CcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCC
Q 010421 226 QPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLK 305 (511)
Q Consensus 226 ~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (511)
||++.+.+. ++|... .. .
T Consensus 203 --Vtli~~~~~-~l~~~d-----------~~----------------------------~-------------------- 220 (466)
T PRK07845 203 --VTLVSSRDR-VLPGED-----------AD----------------------------A-------------------- 220 (466)
T ss_pred --EEEEEcCCc-CCCCCC-----------HH----------------------------H--------------------
Confidence 999998765 333321 00 0
Q ss_pred CCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCc--EEEcCCceeeccEEEEecCCCCcccccccCC
Q 010421 306 PDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLP 380 (511)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~ 380 (511)
.+.+.+.+++.+|+++.+. +.+++ +++ |.+.+|+++++|.||+|+|++|+...+.+
T Consensus 221 -----------------~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l-- 281 (466)
T PRK07845 221 -----------------AEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGL-- 281 (466)
T ss_pred -----------------HHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCc--
Confidence 0011123455567777664 66664 333 45678889999999999999999764211
Q ss_pred CcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 381 EPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
.-.++..++.+.+.+...+ .++.||+|++|..... .....|..|++.++..+.|.
T Consensus 282 -~~~gl~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 282 -EEAGVELTPSGHITVDRVS-RTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred -hhhCceECCCCcEeECCCc-ccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 1011112334445555443 3578999999987754 34578999999999988764
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-23 Score=211.87 Aligned_cols=305 Identities=19% Similarity=0.206 Sum_probs=177.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC--------CcCccccC-CCcCceeccCCCCccc----cCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD--------SIGGIWKS-CSYNSTKLQSHRSDYE----FTDFPWPNR 68 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~--------~~GG~w~~-~~~~~~~~~~~~~~~~----~~~~~~~~~ 68 (511)
.+||+|||||++|+.+|..+ .|.+|+|+|+.. .+||+|.. .++|.-.+......+. ...+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 47999999999999999999 899999999731 58998765 2444432211111111 011111100
Q ss_pred CCCCCCChHHHHHHHHHHHHhc-----------CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC
Q 010421 69 DDPGFPSYTEILDYLESYAKHF-----------DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS 137 (511)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~-----------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (511)
...-.....+.++.....+++ ++ .+. ..+..-++ .. +|.+.+.+
T Consensus 82 -~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v--~~i-~G~a~f~~------------------~~--~v~v~~~~- 136 (484)
T TIGR01438 82 -ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKV--NYE-NAYAEFVD------------------KH--RIKATNKK- 136 (484)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCc--EEE-EEEEEEcC------------------CC--EEEEeccC-
Confidence 001123344444443333322 22 111 11111111 12 35554322
Q ss_pred CceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHH
Q 010421 138 NSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECA 217 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~ 217 (511)
+....+.||+||+||| +.|..|++| |.+.. .+++.+...+ ....++|+|||+|.+|+|+|..++
T Consensus 137 g~~~~~~~d~lVIATG---s~p~~p~ip---G~~~~---~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~ 200 (484)
T TIGR01438 137 GKEKIYSAERFLIATG---ERPRYPGIP---GAKEL---CITSDDLFSL-------PYCPGKTLVVGASYVALECAGFLA 200 (484)
T ss_pred CCceEEEeCEEEEecC---CCCCCCCCC---Cccce---eecHHHhhcc-------cccCCCEEEECCCHHHHHHHHHHH
Confidence 2223689999999999 568888888 65321 2333333321 124578999999999999999999
Q ss_pred HhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccC
Q 010421 218 ESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKL 297 (511)
Q Consensus 218 ~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (511)
+.+.+ ||++.|. . ++|..+ ..
T Consensus 201 ~~G~~-----Vtli~~~-~-~l~~~d-------~~--------------------------------------------- 221 (484)
T TIGR01438 201 GIGLD-----VTVMVRS-I-LLRGFD-------QD--------------------------------------------- 221 (484)
T ss_pred HhCCc-----EEEEEec-c-cccccC-------HH---------------------------------------------
Confidence 98765 9999874 2 334332 00
Q ss_pred CcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCc---eeeccEEEEecCC
Q 010421 298 PLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNT---KLEADVVILCTGY 369 (511)
Q Consensus 298 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~---~~~~D~VI~aTG~ 369 (511)
+.+.+.+.+++.+|+++.+. +.+++. ++ |++++|+ ++++|.||+|+|+
T Consensus 222 ------------------------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 222 ------------------------CANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred ------------------------HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 00011123455567777664 445542 22 5566663 6999999999999
Q ss_pred CCcccccccCCCcccccccCC-CCcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHhcC
Q 010421 370 DGKKKLKAFLPEPFQSLLEHP-SGLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l~g 436 (511)
+|+..++.. .-.++..+. ++.+.+... ..++.|++|++|.... ....+.|..|++.+++.+.+
T Consensus 278 ~pn~~~l~l---~~~gv~~~~~~G~I~Vd~~-~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 278 DACTRKLNL---ENVGVKINKKTGKIPADEE-EQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CcCCCcCCc---ccccceecCcCCeEecCCC-cccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 999764221 111111111 233434333 3467899999998753 33457899999999999875
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-23 Score=209.65 Aligned_cols=165 Identities=27% Similarity=0.340 Sum_probs=111.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.+ .+|. +....++.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~-gip~------------------------~~~~~~~~ 186 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY-GIPE------------------------FRLPKEIV 186 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee-cCCC------------------------ccCCHHHH
Confidence 357999999999999999999 89999999999999987654 1111 11123455
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.......+++++ .+++++.|. . .|++.+. ...||+||+|||+. .|+
T Consensus 187 ~~~~~~l~~~gv--~~~~~~~v~---~---------------------~v~~~~~------~~~yd~viiAtGa~--~p~ 232 (449)
T TIGR01316 187 VTEIKTLKKLGV--TFRMNFLVG---K---------------------TATLEEL------FSQYDAVFIGTGAG--LPK 232 (449)
T ss_pred HHHHHHHHhCCc--EEEeCCccC---C---------------------cCCHHHH------HhhCCEEEEeCCCC--CCC
Confidence 555555566776 666665431 1 1333222 24699999999963 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchh--------hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKE--------AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~--------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
.|.+| |.+. .| ++++.++...... .......+|+|+|||+|.+|+|+|..+.+.+.+ ||++.
T Consensus 233 ~~~ip---G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~-----Vtlv~ 302 (449)
T TIGR01316 233 LMNIP---GEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE-----VHCLY 302 (449)
T ss_pred cCCCC---CCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE-----EEEEe
Confidence 88888 5442 22 4444433210000 001134689999999999999999999998764 99999
Q ss_pred ecCc
Q 010421 233 RTTH 236 (511)
Q Consensus 233 R~~~ 236 (511)
|++.
T Consensus 303 ~~~~ 306 (449)
T TIGR01316 303 RRTR 306 (449)
T ss_pred ecCc
Confidence 9764
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=206.68 Aligned_cols=304 Identities=15% Similarity=0.126 Sum_probs=176.7
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCChH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 77 (511)
+||+|||||++|+++|.+| .|.+|+|+|+ +.+||+|... .+|...+......+. ...+.+... ....+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE--NVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC--CCcCCHH
Confidence 7999999999999999999 8999999999 8899988642 344322221111111 111111100 1112333
Q ss_pred HHHHHHHHHH-----------HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeC
Q 010421 78 EILDYLESYA-----------KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFE 146 (511)
Q Consensus 78 ~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 146 (511)
.+.++.+... ++.++ .+..+ ++..++ ...+.+...++ . .++.||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~~------------------~~~~~v~~~~g--~--~~~~~d 133 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKV--TVIKG-EAKFLD------------------PGTVLVTGENG--E--ETLTAK 133 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc------------------CCEEEEecCCC--c--EEEEeC
Confidence 4433333322 22333 22222 222221 22233332221 1 268999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCcccc-eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCC
Q 010421 147 FLVVCTGKYGDVPIIPAFPNNKGPEVFEG-QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEG 225 (511)
Q Consensus 147 ~vVlAtG~~~~~p~~p~~~~~~g~~~~~g-~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 225 (511)
+||+||| ..|+.|++| . + +.+ .+.++.+.... ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 134 ~lVlAtG---~~p~~~~~~-~-~---~~~~~~~~~~~~~~~-------~~~~~~vvViGgG~~g~e~A~~l~~~g~~--- 195 (461)
T TIGR01350 134 NIIIATG---SRPRSLPGP-F-D---FDGEVVITSTGALNL-------KEVPESLVIIGGGVIGIEFASIFASLGSK--- 195 (461)
T ss_pred EEEEcCC---CCCCCCCCC-C-C---CCCceEEcchHHhcc-------ccCCCeEEEECCCHHHHHHHHHHHHcCCc---
Confidence 9999999 456666553 0 1 112 23333322221 13468999999999999999999988754
Q ss_pred CcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCC
Q 010421 226 QPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLK 305 (511)
Q Consensus 226 ~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (511)
|+++.|.+. ++|... ...
T Consensus 196 --Vtli~~~~~-~l~~~~-----------~~~------------------------------------------------ 213 (461)
T TIGR01350 196 --VTVIEMLDR-ILPGED-----------AEV------------------------------------------------ 213 (461)
T ss_pred --EEEEEcCCC-CCCCCC-----------HHH------------------------------------------------
Confidence 999999875 233211 000
Q ss_pred CCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCcE--EEcCC--ceeeccEEEEecCCCCccccccc
Q 010421 306 PDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGGL--EFEDN--TKLEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~v--~~~dG--~~~~~D~VI~aTG~~~~~~~~~~ 378 (511)
...+.+.+++.+|+++.+. +.+++ ++++ .+.+| +++++|.||+|||.+++...+.
T Consensus 214 -----------------~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~- 275 (461)
T TIGR01350 214 -----------------SKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLG- 275 (461)
T ss_pred -----------------HHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCC-
Confidence 0011123445567777764 66664 3344 34567 4699999999999999865210
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+ .-.++..+..+.+.+...+ .++.||+|++|.... ......|..|++.+|..+.++
T Consensus 276 ~--~~~gl~~~~~g~i~vd~~l-~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 276 L--ENLGVELDERGRIVVDEYM-RTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred c--HhhCceECCCCcEeeCCCc-ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 0 0011111233334444332 356799999998764 334578999999999999764
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-22 Score=203.52 Aligned_cols=304 Identities=12% Similarity=0.099 Sum_probs=174.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc----cCCCCCCCCCCCCCCChHH
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE----FTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 78 (511)
+|+||||||+|+++|..+ .|.+|+|+|++ .+||++... +.|...+......+. ...+..+............
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 799999999999999999 89999999995 688887541 222211100000000 0111111100011223445
Q ss_pred HHHHHHHHHHh-----------cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 79 ILDYLESYAKH-----------FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 79 ~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
+..+.....++ .++ .+ +..++..++ .. ++.+...+ + ..++.||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~a~~~~------------------~~--~v~v~~~~-~-~~~~~~d~ 135 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKI--KV-IQGKASFET------------------DH--RVRVEYGD-K-EEVVDAEQ 135 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCc--EE-EEEEEEEcc------------------CC--EEEEeeCC-C-cEEEECCE
Confidence 54444333332 122 11 122332222 22 23333321 1 12689999
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCc
Q 010421 148 LVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQP 227 (511)
Q Consensus 148 vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~ 227 (511)
||||||+ .|..|+++ +.+. ..++++.+...+ ...+++|+|||+|.+|+|+|..+.+.+.+
T Consensus 136 lviATGs---~p~~~p~~---~~~~--~~v~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~~g~~----- 195 (458)
T PRK06912 136 FIIAAGS---EPTELPFA---PFDG--KWIINSKHAMSL-------PSIPSSLLIVGGGVIGCEFASIYSRLGTK----- 195 (458)
T ss_pred EEEeCCC---CCCCCCCC---CCCC--CeEEcchHHhCc-------cccCCcEEEECCCHHHHHHHHHHHHcCCe-----
Confidence 9999994 56666565 4321 124554433321 12468999999999999999999887654
Q ss_pred EEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCC
Q 010421 228 CTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPD 307 (511)
Q Consensus 228 Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 307 (511)
|+++.|.+. ++|... ..+
T Consensus 196 Vtli~~~~~-ll~~~d-----------~e~-------------------------------------------------- 213 (458)
T PRK06912 196 VTIVEMAPQ-LLPGED-----------EDI-------------------------------------------------- 213 (458)
T ss_pred EEEEecCCC-cCcccc-----------HHH--------------------------------------------------
Confidence 999998765 233211 000
Q ss_pred CccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc--EEEc-CCc--eeeccEEEEecCCCCcccccccCCC
Q 010421 308 HPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG--LEFE-DNT--KLEADVVILCTGYDGKKKLKAFLPE 381 (511)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~--v~~~-dG~--~~~~D~VI~aTG~~~~~~~~~~~~~ 381 (511)
.+.+.+.+++.+|+++.+. +.+++.++ +.+. +|+ ++++|.||+|||.+|+...+. .
T Consensus 214 ---------------~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~---l 275 (458)
T PRK06912 214 ---------------AHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLN---L 275 (458)
T ss_pred ---------------HHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCC---c
Confidence 0011123445567777765 66775433 4443 443 589999999999999865321 1
Q ss_pred cccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 382 PFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 382 ~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+..++..... .+.+..++ .++.||+|++|.... ....+.|..|++.+|..+.|.
T Consensus 276 ~~~gv~~~~~-gi~Vd~~~-~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 276 EKAGVQFSNK-GISVNEHM-QTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred hhcCceecCC-CEEeCCCe-ecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 1111111222 24444433 256899999998765 334568999999999999874
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=216.27 Aligned_cols=296 Identities=21% Similarity=0.197 Sum_probs=169.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||||||+||..| .|++|+|||+++.+||.... .+|..+ .+ .+..+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~-~IP~~r-----------------------lp-~e~l~ 591 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN-IIPEFR-----------------------IS-AESIQ 591 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee-cccccC-----------------------CC-HHHHH
Confidence 47999999999999999999 89999999999999987654 222111 11 23344
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+..+.+..+++ .+++++. . + +++.+.. ...||+||+|||+. .+..
T Consensus 592 ~~ie~l~~~GV--e~~~g~~-----~-----------------d----~~ve~l~-----~~gYDaVIIATGA~--~~~~ 636 (1012)
T TIGR03315 592 KDIELVKFHGV--EFKYGCS-----P-----------------D----LTVAELK-----NQGYKYVILAIGAW--KHGP 636 (1012)
T ss_pred HHHHHHHhcCc--EEEEecc-----c-----------------c----eEhhhhh-----cccccEEEECCCCC--CCCC
Confidence 44445555676 5665531 1 0 1222211 45699999999975 3455
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHh-cCCCCCCcEEEEEecCceeec
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAES-NQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~-~~~~~~~~Vtl~~R~~~~~~p 240 (511)
+.++ |... .++.+.++.............+|+|+|||+|.+|+|+|..+.+. +. ++|+++.|+..-.+|
T Consensus 637 l~I~---G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga----~kVtLVyRr~~~~Mp 706 (1012)
T TIGR03315 637 LRLE---GGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGV----EKVTVVYRRTKRYMP 706 (1012)
T ss_pred CCcC---CCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCC----ceEEEEEccCccccc
Confidence 5566 4321 23333333210000001234689999999999999999988876 42 369999997642333
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ..+ ... +. .++ ...
T Consensus 707 a~~-----------eEl----------------------------~~a----le-------eGV-------------e~~ 723 (1012)
T TIGR03315 707 ASR-----------EEL----------------------------EEA----LE-------DGV-------------DFK 723 (1012)
T ss_pred cCH-----------HHH----------------------------HHH----HH-------cCC-------------EEE
Confidence 221 000 000 00 000 000
Q ss_pred ccCCchhhhhccCeEEEEeCceeEEeCCc--EEEcCCc--eeeccEEEEecCCCCcccccccCCCcccccccCCCCcccc
Q 010421 321 IMPEGFFSEAEKGKIVFKRASKWWFWKGG--LEFEDNT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPL 396 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~i~~~~~~~--v~~~dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (511)
. ..-...+..+++++..-.+...+.++ ....+|+ ++++|.||+|+|++++..+.+.++ +..+..+.+.+
T Consensus 724 ~--~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~G-----L~ld~~G~I~V 796 (1012)
T TIGR03315 724 E--LLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNG-----IPLDEYGWPVV 796 (1012)
T ss_pred e--CCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcC-----cccCCCCCEEe
Confidence 0 00000112334433221111111222 2233454 589999999999999876543221 11123333444
Q ss_pred eeeecCCCCCceEEEeecc-cchhhhhHHHHHHHHHHHhcCCCC
Q 010421 397 YRGTIHPLIPNMAFVGYIE-SVSNLHTAELRSIWLSRLIDDKFK 439 (511)
Q Consensus 397 y~~~~~~~~pnl~~iG~~~-~~~~~~~~e~qa~~~a~~l~g~~~ 439 (511)
......++.|++|++|... .+.....|..|++.+|..+.++..
T Consensus 797 D~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 797 NQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 4333456789999999875 455667899999999999876543
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=218.98 Aligned_cols=166 Identities=24% Similarity=0.298 Sum_probs=117.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||||||+||..| .|++|+|||+.+.+||...+ ..| .|....++.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y-GIP------------------------~~rlp~~vi 359 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY-GIP------------------------EFRLPNQLI 359 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc-cCC------------------------CCcChHHHH
Confidence 358999999999999999999 99999999999999998765 222 222334566
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+...+.++.+|+ .+++|+.|-. .+++.+.. ...||+||+|||+. .|+
T Consensus 360 ~~~i~~l~~~Gv--~f~~n~~vG~------------------------dit~~~l~-----~~~yDAV~LAtGA~--~pr 406 (944)
T PRK12779 360 DDVVEKIKLLGG--RFVKNFVVGK------------------------TATLEDLK-----AAGFWKIFVGTGAG--LPT 406 (944)
T ss_pred HHHHHHHHhhcC--eEEEeEEecc------------------------EEeHHHhc-----cccCCEEEEeCCCC--CCC
Confidence 666667777887 7777765421 24444432 35699999999974 688
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhh---------hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEA---------ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMI 231 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~---------~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~ 231 (511)
.+++| |.+. .| ++.+.+|....... ......||+|+|||||.+|+|+|..+.+.+.+ |+++
T Consensus 407 ~l~Ip---G~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~-----Vtlv 476 (944)
T PRK12779 407 FMNVP---GEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN-----VTIV 476 (944)
T ss_pred cCCCC---CCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE-----EEEE
Confidence 88888 5432 22 44444432110000 00123689999999999999999999988764 9999
Q ss_pred EecCc
Q 010421 232 VRTTH 236 (511)
Q Consensus 232 ~R~~~ 236 (511)
.|++.
T Consensus 477 ~rr~~ 481 (944)
T PRK12779 477 YRRTK 481 (944)
T ss_pred EecCc
Confidence 99753
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-21 Score=181.41 Aligned_cols=200 Identities=24% Similarity=0.325 Sum_probs=141.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCcCccccCC-CcCceeccC-----------CCCccccCCCC-
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSIGGIWKSC-SYNSTKLQS-----------HRSDYEFTDFP- 64 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~-----------~~~~~~~~~~~- 64 (511)
|+...|++.||.||+-|+.|..| .+.+...+||.+.+ .|+.. ..|+..+++ |...|+|-.+-
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 55678999999999999999999 46889999999888 78764 345555544 33444443211
Q ss_pred -------CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC
Q 010421 65 -------WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS 137 (511)
Q Consensus 65 -------~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (511)
+-.. ...++.+.|+.+|+++.+.++. .++|+++|++|...+ .+....+.+....
T Consensus 80 ~h~RLy~Fl~~-e~f~i~R~Ey~dY~~Waa~~l~---~~rfg~~V~~i~~~~--------------~d~~~~~~~~t~~- 140 (436)
T COG3486 80 EHGRLYEFLNY-ETFHIPRREYNDYCQWAASQLP---SLRFGEEVTDISSLD--------------GDAVVRLFVVTAN- 140 (436)
T ss_pred HcchHhhhhhh-hcccccHHHHHHHHHHHHhhCC---ccccCCeeccccccC--------------CcceeEEEEEcCC-
Confidence 1111 4678899999999999999984 699999999874321 1333332222221
Q ss_pred CceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccc-ceEEeccccCccchhhhhhccCCCc-EEEECCCCCHHHHHHH
Q 010421 138 NSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFE-GQVLHSIDYCKLDKEAASQLLKDKK-VAVVGFKKSAIDLAKE 215 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~-g~~~hs~~~~~~~~~~~~~~~~~k~-V~VvG~G~sg~d~a~~ 215 (511)
+. .+.|+.||+++| ..|.+|..- ..+. ++++|+++|.... .....|+ |+|||+|-||+|+...
T Consensus 141 ~~--~y~ar~lVlg~G---~~P~IP~~f-----~~l~~~~vfHss~~~~~~-----~~~~~~~~V~ViG~GQSAAEi~~~ 205 (436)
T COG3486 141 GT--VYRARNLVLGVG---TQPYIPPCF-----RSLIGERVFHSSEYLERH-----PELLQKRSVTVIGSGQSAAEIFLD 205 (436)
T ss_pred Cc--EEEeeeEEEccC---CCcCCChHH-----hCcCccceeehHHHHHhh-----HHhhcCceEEEEcCCccHHHHHHH
Confidence 22 789999999999 689998521 2222 4799999997532 2234454 9999999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCce
Q 010421 216 CAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 216 l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
|...... ...++.|+.|+..+
T Consensus 206 Ll~~~~~-~~~~l~witR~~gf 226 (436)
T COG3486 206 LLNSQPP-QDYQLNWITRSSGF 226 (436)
T ss_pred HHhCCCC-cCccceeeeccCCC
Confidence 9865322 22358899998864
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=211.33 Aligned_cols=317 Identities=17% Similarity=0.189 Sum_probs=179.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-CCcCccccCC-CcCceeccCCCCc------------cccC--CCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-DSIGGIWKSC-SYNSTKLQSHRSD------------YEFT--DFPW 65 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~~~GG~w~~~-~~~~~~~~~~~~~------------~~~~--~~~~ 65 (511)
.+||+|||+|++|+.+|..+ .|.+|+|+|+. ..+||++... +.|.-.+...... +... .||.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 57999999999999999999 89999999974 4699986541 3332221111111 1111 0010
Q ss_pred ------C--CCC-CCCCCChHHHHHHHHHHHHhcCC------CC-ceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 66 ------P--NRD-DPGFPSYTEILDYLESYAKHFDV------FK-CVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 66 ------~--~~~-~~~~~~~~~~~~yl~~~~~~~~~------~~-~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
+ .+. ...-.....+.++.+...+++.- .. .+...++.+.+... .+.+ .+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G---------~a~f---~~~~~ 263 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYE---------RGHI---VDKNT 263 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEe---------EEEE---ecCCe
Confidence 0 000 01123556666776666554311 00 01112222333321 0000 11123
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCH
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSA 209 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg 209 (511)
|.+... ++ ++.||+|||||| +.|..|+++ +.+. ..++++.+...+. ..+++|+|||+|.+|
T Consensus 264 v~v~~~--g~--~i~ad~lIIATG---S~P~~P~~~---~~~~--~~V~ts~d~~~l~-------~lpk~VvIVGgG~iG 324 (659)
T PTZ00153 264 IKSEKS--GK--EFKVKNIIIATG---STPNIPDNI---EVDQ--KSVFTSDTAVKLE-------GLQNYMGIVGMGIIG 324 (659)
T ss_pred EEEccC--CE--EEECCEEEEcCC---CCCCCCCCC---CCCC--CcEEehHHhhhhh-------hcCCceEEECCCHHH
Confidence 444321 22 689999999999 567777655 3221 1355554433221 247899999999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHH
Q 010421 210 IDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFI 289 (511)
Q Consensus 210 ~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (511)
+|+|..++..+.+ ||++.+.+. ++|..+ .... ..
T Consensus 325 vE~A~~l~~~G~e-----VTLIe~~~~-ll~~~d-----------~eis----------------------------~~- 358 (659)
T PTZ00153 325 LEFMDIYTALGSE-----VVSFEYSPQ-LLPLLD-----------ADVA----------------------------KY- 358 (659)
T ss_pred HHHHHHHHhCCCe-----EEEEeccCc-ccccCC-----------HHHH----------------------------HH-
Confidence 9999999888754 999999876 333221 0000 00
Q ss_pred HHHHhccCCcccCCCCCCCccccccccccccccCCchhhh-hccCeEEEEeCc-eeEEeCCc----EE--EcC-------
Q 010421 290 ESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSE-AEKGKIVFKRAS-KWWFWKGG----LE--FED------- 354 (511)
Q Consensus 290 ~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~-l~~g~v~v~~~~-i~~~~~~~----v~--~~d------- 354 (511)
+.+. +++.+|+++.+. +.+++++. |. +.+
T Consensus 359 ------------------------------------l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~ 402 (659)
T PTZ00153 359 ------------------------------------FERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESD 402 (659)
T ss_pred ------------------------------------HHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccc
Confidence 0011 233456776664 56665321 33 221
Q ss_pred C--------ceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCC-----CCCceEEEeecccc-hhh
Q 010421 355 N--------TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHP-----LIPNMAFVGYIESV-SNL 420 (511)
Q Consensus 355 G--------~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~pnl~~iG~~~~~-~~~ 420 (511)
+ +++++|.||+|||.+|+...+. .+-.++..+ ++.+.+..++... ..||+|++|..... ...
T Consensus 403 ~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~---l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La 478 (659)
T PTZ00153 403 GPKKNMNDIKETYVDSCLVATGRKPNTNNLG---LDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLA 478 (659)
T ss_pred ccccccccceEEEcCEEEEEECcccCCccCC---chhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCH
Confidence 1 3699999999999999976421 111111112 2334444433322 26999999987653 345
Q ss_pred hhHHHHHHHHHHHhcCC
Q 010421 421 HTAELRSIWLSRLIDDK 437 (511)
Q Consensus 421 ~~~e~qa~~~a~~l~g~ 437 (511)
+.|..||+.++..|.|+
T Consensus 479 ~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 479 HTASHQALKVVDWIEGK 495 (659)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 78999999999999875
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-22 Score=214.45 Aligned_cols=167 Identities=27% Similarity=0.361 Sum_probs=112.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||||||+||..| .|++|+|||+.+.+||.+.+ ..|. +.+ ..++.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~-gip~--------------~rl----------p~~~~ 484 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY-GIPE--------------FRL----------PKKIV 484 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee-cCCC--------------CCC----------CHHHH
Confidence 357999999999999999999 89999999999889988765 2211 111 12344
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+...+.++++++ .+++++.|. . .|++.+.. ...||+||||||+. .|+
T Consensus 485 ~~~~~~l~~~gv--~~~~~~~v~---~---------------------~v~~~~l~-----~~~ydavvlAtGa~--~~~ 531 (752)
T PRK12778 485 DVEIENLKKLGV--KFETDVIVG---K---------------------TITIEELE-----EEGFKGIFIASGAG--LPN 531 (752)
T ss_pred HHHHHHHHHCCC--EEECCCEEC---C---------------------cCCHHHHh-----hcCCCEEEEeCCCC--CCC
Confidence 444555666777 677765541 1 13333221 45699999999963 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchh-------hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKE-------AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~-------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
.|.+| |.+. . .++++.++...... .......+|+|+|||+|.+|+|+|..+.+.+.+ +||++.|
T Consensus 532 ~l~ip---G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~----~Vtlv~r 602 (752)
T PRK12778 532 FMNIP---GENS-N-GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAE----RVTIVYR 602 (752)
T ss_pred CCCCC---CCCC-C-CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCC----eEEEeee
Confidence 88888 5442 1 24454443211000 001234689999999999999999999888652 5999999
Q ss_pred cCc
Q 010421 234 TTH 236 (511)
Q Consensus 234 ~~~ 236 (511)
++.
T Consensus 603 ~~~ 605 (752)
T PRK12778 603 RSE 605 (752)
T ss_pred cCc
Confidence 764
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=208.45 Aligned_cols=164 Identities=26% Similarity=0.401 Sum_probs=109.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.. .+| .+....++.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~-gip------------------------~~~~~~~~~~ 247 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY-GIP------------------------RFRLPESVID 247 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee-cCC------------------------CCCCCHHHHH
Confidence 47999999999999999999 89999999999999998765 221 1112234455
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+....+.++++ .+++++.+. ++ +++.+. ...||+||+|||+. .+..
T Consensus 248 ~~~~~l~~~Gv--~i~~~~~v~-~d-----------------------v~~~~~------~~~~DaVilAtGa~--~~~~ 293 (652)
T PRK12814 248 ADIAPLRAMGA--EFRFNTVFG-RD-----------------------ITLEEL------QKEFDAVLLAVGAQ--KASK 293 (652)
T ss_pred HHHHHHHHcCC--EEEeCCccc-Cc-----------------------cCHHHH------HhhcCEEEEEcCCC--CCCC
Confidence 55555667777 677766431 11 112111 23499999999964 3455
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+.+| |.+. .| ++...++..... .......+|+|+|||+|.+|+|+|..+.+.+. ++|+++.|++.
T Consensus 294 ~~ip---G~~~-~g-v~~~~~~l~~~~-~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga----~~Vtlv~r~~~ 358 (652)
T PRK12814 294 MGIP---GEEL-PG-VISGIDFLRNVA-LGTALHPGKKVVVIGGGNTAIDAARTALRLGA----ESVTILYRRTR 358 (652)
T ss_pred CCCC---CcCc-CC-cEeHHHHHHHhh-cCCcccCCCeEEEECCCHHHHHHHHHHHHcCC----CeEEEeeecCc
Confidence 6677 5432 22 333333311000 00123578999999999999999999988764 35999999864
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-21 Score=177.96 Aligned_cols=310 Identities=18% Similarity=0.220 Sum_probs=191.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccC-----------CCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT-----------DFPWPNRD 69 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 69 (511)
+.+|.+|||||.+|+++|++. .|.++.|+|..-.+||++-. +-.+|+..|-+. ++.|+...
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn------~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~ 92 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN------VGCVPKKVMWYAADYSEEMEDAKDYGFPINE 92 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe------eccccceeEEehhhhhHHhhhhhhcCCcccc
Confidence 358999999999999999999 99999999998799998765 223555554332 33444321
Q ss_pred CCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEE
Q 010421 70 DPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFL 148 (511)
Q Consensus 70 ~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 148 (511)
...| ....+.+--.+|..++ ++++...-+..|.-++-. +.+ ..++...|...++. ...+.++++
T Consensus 93 ~~~f-dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~----------a~f-~~~~~v~V~~~d~~---~~~Ytak~i 157 (478)
T KOG0405|consen 93 EGSF-DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR----------ARF-VSPGEVEVEVNDGT---KIVYTAKHI 157 (478)
T ss_pred ccCC-cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeee----------EEE-cCCCceEEEecCCe---eEEEecceE
Confidence 1222 2333333333333332 222233333444444421 000 11344445544442 335899999
Q ss_pred EEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 010421 149 VVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPC 228 (511)
Q Consensus 149 VlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~V 228 (511)
+|||| +.|.+|+|| |.+. -+.|..+.++. ..+||++|||+|++|+|+|.-++..+.. +
T Consensus 158 LIAtG---g~p~~PnIp---G~E~----gidSDgff~Le-------e~Pkr~vvvGaGYIavE~Agi~~gLgse-----t 215 (478)
T KOG0405|consen 158 LIATG---GRPIIPNIP---GAEL----GIDSDGFFDLE-------EQPKRVVVVGAGYIAVEFAGIFAGLGSE-----T 215 (478)
T ss_pred EEEeC---CccCCCCCC---chhh----ccccccccchh-------hcCceEEEEccceEEEEhhhHHhhcCCe-----e
Confidence 99999 678999999 6652 35566665542 4679999999999999999999999876 9
Q ss_pred EEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCC
Q 010421 229 TMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDH 308 (511)
Q Consensus 229 tl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 308 (511)
+++.|... ++..++ .
T Consensus 216 hlfiR~~k-vLR~FD-------~--------------------------------------------------------- 230 (478)
T KOG0405|consen 216 HLFIRQEK-VLRGFD-------E--------------------------------------------------------- 230 (478)
T ss_pred EEEEecch-hhcchh-------H---------------------------------------------------------
Confidence 99999764 221111 1
Q ss_pred ccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc---EEEcCCceeeccEEEEecCCCCcccccccCCCc
Q 010421 309 PFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG---LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~---v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~ 382 (511)
.+++..-+.+...+|.+++.. +.++.. ++ +..+.|+...+|.++||||.+|+..- +..+
T Consensus 231 ------------~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~---L~le 295 (478)
T KOG0405|consen 231 ------------MISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG---LNLE 295 (478)
T ss_pred ------------HHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc---ccch
Confidence 111122234445567777764 444432 22 44556766779999999999998632 1111
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcC
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g 436 (511)
-.+...++++.+.+.. ...++.|+|+.+|.... ....|+|-+.+|-+|..+-|
T Consensus 296 ~vGVk~~~~g~IivDe-Yq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 296 NVGVKTDKNGAIIVDE-YQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred hcceeeCCCCCEEEec-cccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 1122224444443221 23467899999998765 34457787888888886644
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=188.06 Aligned_cols=180 Identities=20% Similarity=0.175 Sum_probs=110.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||++|+.+|..| .|++|+++|+.+.+||.+.. .++ ......+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~-----------------------~~~~~~~~~~~ 73 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIP-----------------------EFRIPIERVRE 73 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCc-----------------------ccccCHHHHHH
Confidence 47999999999999999999 89999999999999887654 111 11112344555
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.++.+.++ ++ .+++++.|..+...... ..+.|.......+ ...+.||+||+|||+. .|..
T Consensus 74 ~~~~l~~~-~i--~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~~~---~~~~~~d~lviAtGs~--~~~~ 133 (352)
T PRK12770 74 GVKELEEA-GV--VFHTRTKVCCGEPLHEE------------EGDEFVERIVSLE---ELVKKYDAVLIATGTW--KSRK 133 (352)
T ss_pred HHHHHHhC-Ce--EEecCcEEeeccccccc------------cccccccccCCHH---HHHhhCCEEEEEeCCC--CCCc
Confidence 55555544 66 67778777654321000 0112222111111 1146899999999963 4677
Q ss_pred CCCCCCCCCCcccceEEeccccC-------cc-chhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYC-------KL-DKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~-------~~-~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
|.+| |.+. . .++.+.++. .. ..........+++|+|||+|.+|+|+|..|...+. ++|+++.|
T Consensus 134 ~~ip---g~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~----~~Vtvi~~ 204 (352)
T PRK12770 134 LGIP---GEDL-P-GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGA----EKVYLAYR 204 (352)
T ss_pred CCCC---Cccc-c-CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEee
Confidence 7787 5432 1 122221110 00 00000012358999999999999999999987654 24999998
Q ss_pred cCc
Q 010421 234 TTH 236 (511)
Q Consensus 234 ~~~ 236 (511)
++.
T Consensus 205 ~~~ 207 (352)
T PRK12770 205 RTI 207 (352)
T ss_pred cch
Confidence 754
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=208.79 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=113.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||||||+||..| .|++|+|||+.+.+||...+ .. +.+....++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~-gi------------------------p~~rl~~e~~ 483 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY-GI------------------------PSFRLPRDII 483 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec-cC------------------------CccCCCHHHH
Confidence 357999999999999999999 99999999999999886544 11 1222234566
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+...+.++++++ .+++++.|. .+ +++.+..+ ...||+||||||+. .|+
T Consensus 484 ~~~~~~l~~~Gv--~~~~~~~vg-~~-----------------------~~~~~l~~----~~~yDaViIATGa~--~pr 531 (1006)
T PRK12775 484 DREVQRLVDIGV--KIETNKVIG-KT-----------------------FTVPQLMN----DKGFDAVFLGVGAG--APT 531 (1006)
T ss_pred HHHHHHHHHCCC--EEEeCCccC-Cc-----------------------cCHHHHhh----ccCCCEEEEecCCC--CCC
Confidence 666666777887 777775431 00 22211100 24589999999974 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchh--------hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKE--------AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~--------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
.+++| |.+. +.+++..+|...... .......||+|+|||+|.+|+|+|..+.+.+.. .|+++.
T Consensus 532 ~l~Ip---G~~l--~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~----~Vtiv~ 602 (1006)
T PRK12775 532 FLGIP---GEFA--GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAP----TVRCVY 602 (1006)
T ss_pred CCCCC---CcCC--CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCC----EEEEEe
Confidence 88888 5432 235555443211000 001234789999999999999999888887653 589998
Q ss_pred ecCc
Q 010421 233 RTTH 236 (511)
Q Consensus 233 R~~~ 236 (511)
|+..
T Consensus 603 rr~~ 606 (1006)
T PRK12775 603 RRSE 606 (1006)
T ss_pred ecCc
Confidence 8754
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=189.73 Aligned_cols=162 Identities=24% Similarity=0.329 Sum_probs=104.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.. ..| .+....++..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~-gip------------------------~~~~~~~~~~ 197 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY-GIP------------------------DFKLEKEVID 197 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee-cCC------------------------cccCCHHHHH
Confidence 47999999999999999999 89999999999999987654 111 1112234555
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
...+.+.++++ .+++++.|.. + +..... ...||+||+|||.. .|..
T Consensus 198 ~~~~~~~~~gv--~~~~~~~v~~-~-----------------------~~~~~~------~~~~d~vvlAtGa~--~~~~ 243 (471)
T PRK12810 198 RRIELMEAEGI--EFRTNVEVGK-D-----------------------ITAEEL------LAEYDAVFLGTGAY--KPRD 243 (471)
T ss_pred HHHHHHHhCCc--EEEeCCEECC-c-----------------------CCHHHH------HhhCCEEEEecCCC--CCCc
Confidence 55556677787 7777765521 1 000010 34699999999964 4666
Q ss_pred CCCCCCCCCCcccceEEeccccCcc-----chh--hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKL-----DKE--AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~-----~~~--~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
+.+| |.+. . .+.+..++... ... .......+|+|+|||+|.+|+|+|..+.+.+.. +|+++.+
T Consensus 244 l~ip---G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~----~Vt~~~~ 313 (471)
T PRK12810 244 LGIP---GRDL-D-GVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAK----SVTQRDI 313 (471)
T ss_pred CCCC---CccC-C-CcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCC----eEEEccc
Confidence 7777 5432 1 23333222100 000 001235689999999999999999988887642 4774433
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=197.00 Aligned_cols=167 Identities=19% Similarity=0.300 Sum_probs=109.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+||||||+||++|..| .|++|+|||+.+.+||.+.+ .+|. +....++.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~-gip~------------------------~~l~~~~~ 380 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF-GIPA------------------------FKLDKSLL 380 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee-cCCC------------------------ccCCHHHH
Confidence 357999999999999999999 89999999999999998765 2222 11123455
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.....++++++ .++++++|.. + +++.+. ...||+||+|||+. .+.
T Consensus 381 ~~~~~~~~~~Gv--~~~~~~~v~~-----~-------------------i~~~~~------~~~~DavilAtGa~--~~~ 426 (654)
T PRK12769 381 ARRREIFSAMGI--EFELNCEVGK-----D-------------------ISLESL------LEDYDAVFVGVGTY--RSM 426 (654)
T ss_pred HHHHHHHHHCCe--EEECCCEeCC-----c-------------------CCHHHH------HhcCCEEEEeCCCC--CCC
Confidence 555566677787 6777776521 0 111111 23699999999975 344
Q ss_pred CCCCCCCCCCCcccceEEeccccC--------ccchh--hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYC--------KLDKE--AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~--------~~~~~--~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
.+.+| |.+. .| +++..+|. ..... .......+|+|+|||+|.+|+|+|..+.+.+. ++|++
T Consensus 427 ~l~i~---g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga----~~Vt~ 497 (654)
T PRK12769 427 KAGLP---NEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGA----SNVTC 497 (654)
T ss_pred CCCCC---CCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC----CeEEE
Confidence 55666 4332 22 22221110 00000 00012468999999999999999998888764 25999
Q ss_pred EEecCce
Q 010421 231 IVRTTHW 237 (511)
Q Consensus 231 ~~R~~~~ 237 (511)
+.|++..
T Consensus 498 i~~~~~~ 504 (654)
T PRK12769 498 AYRRDEA 504 (654)
T ss_pred eEecCCC
Confidence 9998653
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=177.30 Aligned_cols=307 Identities=14% Similarity=0.172 Sum_probs=183.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++++|+|+|+|++|.+.++.| .-++|+|++++..+-=+|.. |++ .-.......+.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL---pS~--------------------~vGTve~rSIv 110 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL---PST--------------------TVGTVELRSIV 110 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc---CCc--------------------cccceeehhhh
Confidence 457999999999999999999 77899999998765222221 111 12222334556
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC--CC-CceeEEEeCEEEEeecccCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH--NS-NSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~~~~~d~vVlAtG~~~~ 157 (511)
+-....+.+-.-. .-.+..+-..+++. .. +|+++.. ++ .....+.||+||+|+|+
T Consensus 111 EPIr~i~r~k~~~-~~y~eAec~~iDp~----------------~k--~V~~~s~t~~~~~~e~~i~YDyLViA~GA--- 168 (491)
T KOG2495|consen 111 EPIRAIARKKNGE-VKYLEAECTKIDPD----------------NK--KVHCRSLTADSSDKEFVIGYDYLVIAVGA--- 168 (491)
T ss_pred hhHHHHhhccCCC-ceEEecccEeeccc----------------cc--EEEEeeeccCCCcceeeecccEEEEeccC---
Confidence 6666666554321 12334455566652 12 3444432 21 33456889999999995
Q ss_pred CCCCCCCCCCCCCCcccceEEeccccCcc-----ch-----hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC-----
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKL-----DK-----EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG----- 222 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~~~~-----~~-----~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~----- 222 (511)
+++.+++|+......|--.+-|+.+.+.. .. ...++..+--+++|||||+||+|+|.+|+..-.+
T Consensus 169 ~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~ 248 (491)
T KOG2495|consen 169 EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKI 248 (491)
T ss_pred CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHh
Confidence 56777777332333343334444333210 00 0001112223699999999999999999865321
Q ss_pred ----CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCC
Q 010421 223 ----PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLP 298 (511)
Q Consensus 223 ----~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
++.-+||++...|. +++. +.+.+..+..
T Consensus 249 yp~l~~~i~vtLiEA~d~-iL~m-------------------------------------------Fdkrl~~yae---- 280 (491)
T KOG2495|consen 249 YPELKKDIKVTLIEAADH-ILNM-------------------------------------------FDKRLVEYAE---- 280 (491)
T ss_pred hhcchhheEEEeeccchh-HHHH-------------------------------------------HHHHHHHHHH----
Confidence 11123444444332 1111 1111111111
Q ss_pred cccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCC----ceeeccEEEEecCCCCcc
Q 010421 299 LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDN----TKLEADVVILCTGYDGKK 373 (511)
Q Consensus 299 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG----~~~~~D~VI~aTG~~~~~ 373 (511)
+.+.+.+|+++.+. +..++++.|+.+++ ++++.-.+|||||-.+..
T Consensus 281 -----------------------------~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 281 -----------------------------NQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred -----------------------------HHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence 24556678888885 77888888877654 569999999999999874
Q ss_pred cccccCCCcccccccCCCC--cccceeeecCCCCCceEEEeeccc----chhhhhHHHHHHHHHHHhcCC
Q 010421 374 KLKAFLPEPFQSLLEHPSG--LLPLYRGTIHPLIPNMAFVGYIES----VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~pnl~~iG~~~~----~~~~~~~e~qa~~~a~~l~g~ 437 (511)
-...+. ..+ ++.+ .+.+...+.+++.+|+|+||.+.. ..+..+|+.|+.|+|+++...
T Consensus 332 ~~k~lm----~~i--~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 332 VIKDLM----KQI--DEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred hhhhHh----hcC--CccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHH
Confidence 322211 111 2222 444666777899999999998763 234569999999999998643
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=187.78 Aligned_cols=170 Identities=22% Similarity=0.331 Sum_probs=112.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||++|+++|..| .|++|+|+|+.+.+||.+.. .+|. +....++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~-gip~------------------------~~~~~~~~ 194 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF-GIPS------------------------FKLDKAVL 194 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee-cCcc------------------------ccCCHHHH
Confidence 357999999999999999999 89999999999999987654 2221 11234566
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
++..+.++++|+ .++++++|... +.+.+. ...||+||+|||.. .+.
T Consensus 195 ~~~~~~~~~~Gv--~~~~~~~v~~~------------------------~~~~~~------~~~~D~vilAtGa~--~~~ 240 (467)
T TIGR01318 195 SRRREIFTAMGI--EFHLNCEVGRD------------------------ISLDDL------LEDYDAVFLGVGTY--RSM 240 (467)
T ss_pred HHHHHHHHHCCC--EEECCCEeCCc------------------------cCHHHH------HhcCCEEEEEeCCC--CCC
Confidence 666677788888 78888766210 111111 24699999999964 233
Q ss_pred CCCCCCCCCCCcccceEEeccccCc--------cc--hhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCK--------LD--KEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~--------~~--~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
.+.+| |.+. . .+.+..+|.. .. .........+|+|+|||+|.+|+|.|..+.+.+. ++||+
T Consensus 241 ~~~i~---g~~~-~-gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga----~~Vtv 311 (467)
T TIGR01318 241 RGGLP---GEDA-P-GVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGA----ASVTC 311 (467)
T ss_pred cCCCC---CcCC-C-CcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCC----CeEEE
Confidence 45566 4332 1 1333222110 00 0000012468999999999999999999888764 25999
Q ss_pred EEecCceeec
Q 010421 231 IVRTTHWTVP 240 (511)
Q Consensus 231 ~~R~~~~~~p 240 (511)
+.|++...+|
T Consensus 312 v~r~~~~~~~ 321 (467)
T TIGR01318 312 AYRRDEANMP 321 (467)
T ss_pred EEecCcccCC
Confidence 9998754333
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=158.01 Aligned_cols=274 Identities=18% Similarity=0.252 Sum_probs=179.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
..+|+|||+||++..||.++ ..++.++||--- .+| .-|+-.+.+....-.|+.|| .-..+.++.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~~-----i~pGGQLtTTT~veNfPGFP-------dgi~G~~l~d 74 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-ANG-----IAPGGQLTTTTDVENFPGFP-------DGITGPELMD 74 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeee-ccC-----cCCCceeeeeeccccCCCCC-------cccccHHHHH
Confidence 45899999999999999999 889999999621 111 22233333333333444442 2246889999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
-+++.+.+++. .| +..+|.+++.. ...++|.+... .+.+|.||+|||+. .+.
T Consensus 75 ~mrkqs~r~Gt--~i-~tEtVskv~~s----------------skpF~l~td~~------~v~~~avI~atGAs---AkR 126 (322)
T KOG0404|consen 75 KMRKQSERFGT--EI-ITETVSKVDLS----------------SKPFKLWTDAR------PVTADAVILATGAS---AKR 126 (322)
T ss_pred HHHHHHHhhcc--ee-eeeehhhcccc----------------CCCeEEEecCC------ceeeeeEEEecccc---eee
Confidence 99999999997 33 44577777762 44566766443 78999999999975 345
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
..+|+. |...|-.+-+.++..++- +...+++|-.+|||||.||+|=|..|.+.+.+ |++++|+..+
T Consensus 127 l~~pg~-ge~~fWqrGiSaCAVCDG----aapifrnk~laVIGGGDsA~EEA~fLtkyask-----Vyii~Rrd~f---- 192 (322)
T KOG0404|consen 127 LHLPGE-GEGEFWQRGISACAVCDG----AAPIFRNKPLAVIGGGDSAMEEALFLTKYASK-----VYIIHRRDHF---- 192 (322)
T ss_pred eecCCC-CcchHHhcccchhhcccC----cchhhcCCeeEEEcCcHHHHHHHHHHHhhccE-----EEEEEEhhhh----
Confidence 556633 333355455666666652 24568999999999999999999999988765 9999998751
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
|.+..|..
T Consensus 193 --------------RAs~~Mq~---------------------------------------------------------- 200 (322)
T KOG0404|consen 193 --------------RASKIMQQ---------------------------------------------------------- 200 (322)
T ss_pred --------------hHHHHHHH----------------------------------------------------------
Confidence 11111100
Q ss_pred cCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEE---cCC--ceeeccEEEEecCCCCcccccccCCCcccccccCC
Q 010421 322 MPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEF---EDN--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHP 390 (511)
Q Consensus 322 ~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~---~dG--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
+++.+.+|+++.+. +.+.-++ ++.. +.| +.++++-+.++.|-.|+..+++ + ....+.
T Consensus 201 ------ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~----g--qve~d~ 268 (322)
T KOG0404|consen 201 ------RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLK----G--QVELDE 268 (322)
T ss_pred ------HHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhc----C--ceeecc
Confidence 23445566665554 2222222 1222 234 3499999999999999987643 1 111244
Q ss_pred CCcccceeeecCCCCCceEEEeeccc
Q 010421 391 SGLLPLYRGTIHPLIPNMAFVGYIES 416 (511)
Q Consensus 391 ~~~~~ly~~~~~~~~pnl~~iG~~~~ 416 (511)
++.+.+-.+...++.|.+|+.|....
T Consensus 269 ~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 269 DGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred CceEEeccCcccccccceeeccccch
Confidence 45554445677788999999997653
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=186.26 Aligned_cols=237 Identities=20% Similarity=0.230 Sum_probs=151.1
Q ss_pred HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE--eCEEEEeecccCCCCCC
Q 010421 84 ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG--FEFLVVCTGKYGDVPII 161 (511)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~d~vVlAtG~~~~~p~~ 161 (511)
+.+.+++++ .++++++|+.+++. +. +|.+.+..+++ .+. ||+||+||| ..|+.
T Consensus 51 ~~~~~~~gv--~~~~~~~V~~id~~----------------~~--~v~~~~~~~~~--~~~~~yd~lIiATG---~~p~~ 105 (427)
T TIGR03385 51 EVFIKKRGI--DVKTNHEVIEVNDE----------------RQ--TVVVRNNKTNE--TYEESYDYLILSPG---ASPIV 105 (427)
T ss_pred HHHHHhcCC--eEEecCEEEEEECC----------------CC--EEEEEECCCCC--EEecCCCEEEECCC---CCCCC
Confidence 445577888 78889999999862 22 45555432223 456 999999999 46788
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhh-hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEA-ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
|.+| |.+. ..+++........... .-....+++|+|||+|.+|+|+|..|++.+.+ |+++.|.+..+.+
T Consensus 106 ~~i~---G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~-----Vtli~~~~~~~~~ 175 (427)
T TIGR03385 106 PNIE---GINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKN-----VTLIHRSERILNK 175 (427)
T ss_pred CCCC---CcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCc-----EEEEECCcccCcc
Confidence 8888 5431 1233322221110000 00124678999999999999999999987654 9999998753222
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ...
T Consensus 176 ~~~-----------~~~--------------------------------------------------------------- 181 (427)
T TIGR03385 176 LFD-----------EEM--------------------------------------------------------------- 181 (427)
T ss_pred ccC-----------HHH---------------------------------------------------------------
Confidence 111 000
Q ss_pred ccCCchhhhhccCeEEEEeCc-eeEEeCCc--EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccce
Q 010421 321 IMPEGFFSEAEKGKIVFKRAS-KWWFWKGG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLY 397 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly 397 (511)
.+.+.+.+++.+|+++.+. +.++++++ +++.+|+++++|.||+|||++++..+.+..+ +..+.++.+.+.
T Consensus 182 --~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g-----l~~~~~G~i~vd 254 (427)
T TIGR03385 182 --NQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSG-----LKLGETGAIWVN 254 (427)
T ss_pred --HHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcC-----cccCCCCCEEEC
Confidence 0011123445567777664 77776655 3678899999999999999999876543221 111233444444
Q ss_pred eeecCCCCCceEEEeeccc-----------chhhhhHHHHHHHHHHHhcCC
Q 010421 398 RGTIHPLIPNMAFVGYIES-----------VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 398 ~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~~a~~l~g~ 437 (511)
..+ .++.||+|++|.... ......+..|++++|+.|.|+
T Consensus 255 ~~~-~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 255 EKF-QTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred CCc-EeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 433 357899999997653 123467999999999999875
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=198.94 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=170.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||||||+||..+ .|++|+|+|+.+.+||.+.... . . ..-.+..++..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~-~--------------~--------~~g~~~~~~~~ 219 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA-E--------------T--------IDGKPAADWAA 219 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc-c--------------c--------cCCccHHHHHH
Confidence 47999999999999999999 9999999999999999875411 0 0 00012233322
Q ss_pred HHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE-EE-------eC-CCCceeEEEeCEEEEe
Q 010421 82 YLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA-VQ-------TH-NSNSIQRYGFEFLVVC 151 (511)
Q Consensus 82 yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------~~-~~~~~~~~~~d~vVlA 151 (511)
-+...++.+ ++ .+..+++|..+... .....+. .. .+ ..+....+.+|+||||
T Consensus 220 ~~~~~l~~~~~v--~v~~~t~V~~i~~~----------------~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILA 281 (985)
T TIGR01372 220 ATVAELTAMPEV--TLLPRTTAFGYYDH----------------NTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLA 281 (985)
T ss_pred HHHHHHhcCCCc--EEEcCCEEEEEecC----------------CeEEEEEEeeeccccccCCccccceEEEEcCEEEEc
Confidence 233333334 35 67778888877531 0000010 00 00 0112236889999999
Q ss_pred ecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 010421 152 TGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMI 231 (511)
Q Consensus 152 tG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~ 231 (511)
||+ .|+.|.+| |.+. .| ++......... .......+++|+|||+|.+|+|+|..|++.+.+ .|+++
T Consensus 282 TGa---~~r~~pip---G~~~-pg-V~~~~~~~~~l--~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~----vV~vv 347 (985)
T TIGR01372 282 TGA---HERPLVFA---NNDR-PG-VMLAGAARTYL--NRYGVAPGKRIVVATNNDSAYRAAADLLAAGIA----VVAII 347 (985)
T ss_pred CCC---CCcCCCCC---CCCC-CC-cEEchHHHHHH--HhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCc----eEEEE
Confidence 995 56777788 5432 22 33221111100 001234689999999999999999999988743 37777
Q ss_pred EecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccc
Q 010421 232 VRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFE 311 (511)
Q Consensus 232 ~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 311 (511)
.+++.. .+
T Consensus 348 ~~~~~~-~~----------------------------------------------------------------------- 355 (985)
T TIGR01372 348 DARADV-SP----------------------------------------------------------------------- 355 (985)
T ss_pred ccCcch-hH-----------------------------------------------------------------------
Confidence 665420 00
Q ss_pred cccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEc----CCceeeccEEEEecCCCCcccccccCCCc
Q 010421 312 EDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFE----DNTKLEADVVILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~----dG~~~~~D~VI~aTG~~~~~~~~~~~~~~ 382 (511)
.+.+.+++.+|+++.+. +.++.++ +|++. +++++++|.|++++|++|+..+...+...
T Consensus 356 -------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 356 -------------EARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred -------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC
Confidence 00123444556766664 5666544 35554 45569999999999999998765433221
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeecccchhhhhHHHHHHHHHHHh
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLI 434 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa~~~a~~l 434 (511)
+ ..+.....+ .-.++.|++|++|.......+..+..+++.++..+
T Consensus 423 ~-----~~~~~~~~~--~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 423 L-----AWDAAIAAF--LPGDAVQGCILAGAANGLFGLAAALADGAAAGAAA 467 (985)
T ss_pred e-----eeccccCce--ecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHH
Confidence 1 111111112 11255799999998776655666777777776554
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=171.35 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=138.7
Q ss_pred CeEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccC-CCcCceeccCCCCcccc--CCCC--C---------
Q 010421 5 SKIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHRSDYEF--TDFP--W--------- 65 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~~~--~~~~--~--------- 65 (511)
++|+|||+|++|+++|.+| ....|.|||+...+|+.-.+ +.-|...+|+|+..|+. +|.| |
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 6899999999999999999 22239999999999865544 35566788888887763 4422 0
Q ss_pred ----CC---CCCCCCCChHHHHHHHHHHHHhcCCCC----ceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe
Q 010421 66 ----PN---RDDPGFPSYTEILDYLESYAKHFDVFK----CVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT 134 (511)
Q Consensus 66 ----~~---~~~~~~~~~~~~~~yl~~~~~~~~~~~----~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 134 (511)
++ .+...|+++.-+.+|+.++...+-... .....++++++.+.. +.+.|.++..+
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~--------------n~~~~~~~~~~ 147 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT--------------NAGGYLVTTAD 147 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc--------------CCceEEEecCC
Confidence 00 114678888899999887766542211 223456777777631 14667777777
Q ss_pred CCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccce-EEeccccCccchhhhhhccCCCcEEEECCCCCHHHHH
Q 010421 135 HNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQ-VLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLA 213 (511)
Q Consensus 135 ~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~-~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a 213 (511)
+. ...||.+|+|||+. .|..+.. . ..+.|. -+++..|.... ......+.+|+|+|+|.+.+|..
T Consensus 148 g~-----~~~ad~~Vlatgh~--~~~~~~~----~-~~~~~~~~~ia~~~~~~~---ld~v~~~drVli~GsgLt~~D~v 212 (474)
T COG4529 148 GP-----SEIADIIVLATGHS--APPADPA----A-RDLKGSPRLIADPYPANA---LDGVDADDRVLIVGSGLTSIDQV 212 (474)
T ss_pred CC-----eeeeeEEEEeccCC--CCCcchh----h-hccCCCcceeccccCCcc---cccccCCCceEEecCCchhHHHH
Confidence 65 78999999999974 3333221 1 222222 24444443210 12445677899999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEecCceeecCcc
Q 010421 214 KECAESNQGPEGQPCTMIVRTTHWTVPHYR 243 (511)
Q Consensus 214 ~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~ 243 (511)
..|.+.+.+ .+||++.|++ +.|...
T Consensus 213 ~~l~~~gh~---g~It~iSRrG--l~~~~h 237 (474)
T COG4529 213 LVLRRRGHK---GPITAISRRG--LVPRPH 237 (474)
T ss_pred HHHhccCCc---cceEEEeccc--cccCCC
Confidence 999998775 7799999998 455443
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=173.94 Aligned_cols=266 Identities=15% Similarity=0.221 Sum_probs=174.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
.+.++|||+|++|..|+.++ .+ -+++++-+...+ .|...++ |+...+ ..+.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-------pydr~~L--s~~~~~---------------~~~~~ 129 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-------PYDRARL--SKFLLT---------------VGEGL 129 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-------cccchhc--ccceee---------------ccccc
Confidence 35799999999999999999 33 367777765544 3332221 000000 01111
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.....++.+.+++ ...+++.|+.++...+ +|.+.+++ .+.|+++||||| +.|
T Consensus 130 a~r~~e~Yke~gI--e~~~~t~v~~~D~~~K------------------~l~~~~Ge-----~~kys~LilATG---s~~ 181 (478)
T KOG1336|consen 130 AKRTPEFYKEKGI--ELILGTSVVKADLASK------------------TLVLGNGE-----TLKYSKLIIATG---SSA 181 (478)
T ss_pred cccChhhHhhcCc--eEEEcceeEEeecccc------------------EEEeCCCc-----eeecceEEEeec---Ccc
Confidence 1111223456777 8899999999997421 57777776 899999999999 467
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
+.|++| |.+.. .+....+..+... .......+++|+|+|+|..|+|+|.+|...+. +||++.+.+ |.+
T Consensus 182 ~~l~~p---G~~~~--nv~~ireieda~~-l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~-----~VT~V~~e~-~~~ 249 (478)
T KOG1336|consen 182 KTLDIP---GVELK--NVFYLREIEDANR-LVAAIQLGGKVVCVGGGFIGMEVAAALVSKAK-----SVTVVFPEP-WLL 249 (478)
T ss_pred ccCCCC---Ccccc--ceeeeccHHHHHH-HHHHhccCceEEEECchHHHHHHHHHHHhcCc-----eEEEEccCc-cch
Confidence 888888 65421 1222222221110 01223457889999999999999999988754 599999976 444
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
|+.. ..
T Consensus 250 ~~lf----------~~---------------------------------------------------------------- 255 (478)
T KOG1336|consen 250 PRLF----------GP---------------------------------------------------------------- 255 (478)
T ss_pred hhhh----------hH----------------------------------------------------------------
Confidence 4321 00
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCCc------EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCC
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG------LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSG 392 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~------v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
.+...+.+.+.+.+|++..+. +.+++++. |.+.||+++++|+||+++|-+|+.++... +...+..+
T Consensus 256 -~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~------g~~~~~~G 328 (478)
T KOG1336|consen 256 -SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK------GILLDSKG 328 (478)
T ss_pred -HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc------cceecccC
Confidence 011122345666778888776 66776543 78899999999999999999999876431 22335667
Q ss_pred cccceeeecCCCCCceEEEeecc
Q 010421 393 LLPLYRGTIHPLIPNMAFVGYIE 415 (511)
Q Consensus 393 ~~~ly~~~~~~~~pnl~~iG~~~ 415 (511)
.+.++..+. .++||+|++|...
T Consensus 329 ~i~V~~~f~-t~~~~VyAiGDva 350 (478)
T KOG1336|consen 329 GIKVDEFFQ-TSVPNVYAIGDVA 350 (478)
T ss_pred CEeehhcee-eccCCccccccee
Confidence 788887654 5699999999654
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=183.33 Aligned_cols=163 Identities=25% Similarity=0.395 Sum_probs=104.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+||||||+||++|..| .|++|+|+|+.+.+||.+.. ..|. +.-..++.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~-gip~------------------------~~~~~~~~~ 191 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY-GIPA------------------------YRLPREVLD 191 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee-cCCC------------------------ccCCHHHHH
Confidence 47899999999999999999 89999999999999997765 2211 111123344
Q ss_pred HHHHHHHhcCCCCceEeeeEE-EEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKV-VEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.-.+.+.++++ .+.+++++ .++.. ... ...||+||+|||.. .+.
T Consensus 192 ~~l~~~~~~Gv--~~~~~~~~~~~~~~-------------------------~~~------~~~~D~Vi~AtG~~--~~~ 236 (564)
T PRK12771 192 AEIQRILDLGV--EVRLGVRVGEDITL-------------------------EQL------EGEFDAVFVAIGAQ--LGK 236 (564)
T ss_pred HHHHHHHHCCC--EEEeCCEECCcCCH-------------------------HHH------HhhCCEEEEeeCCC--CCC
Confidence 44445666777 67777654 22111 000 22489999999975 233
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+.++ +.+ ..| +++...+..... .......+++|+|||+|.+|+|.+..+.+.+. ++|+++.|.+.
T Consensus 237 ~~~i~---g~~-~~g-v~~~~~~l~~~~-~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga----~~v~ii~r~~~ 302 (564)
T PRK12771 237 RLPIP---GED-AAG-VLDAVDFLRAVG-EGEPPFLGKRVVVIGGGNTAMDAARTARRLGA----EEVTIVYRRTR 302 (564)
T ss_pred cCCCC---CCc-cCC-cEEHHHHHHHhh-ccCCcCCCCCEEEECChHHHHHHHHHHHHcCC----CEEEEEEecCc
Confidence 34555 432 122 333322211000 00123468999999999999999988877763 25999999764
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=184.64 Aligned_cols=166 Identities=19% Similarity=0.283 Sum_probs=105.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||+|++|+++|..| .|++|+|+|+.+.+||.+.. ..| .+....++.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~-~i~------------------------~~~~~~~~~ 336 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY-GIP------------------------SYRLPDEAL 336 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee-cCC------------------------cccCCHHHH
Confidence 357899999999999999999 89999999999999887654 111 111123444
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.......+++++ .++++++|.. + +..+.. ...||+||+|||+. .|+
T Consensus 337 ~~~~~~~~~~gv--~~~~~~~v~~-~-----------------------~~~~~~------~~~yD~vilAtGa~--~~r 382 (604)
T PRK13984 337 DKDIAFIEALGV--KIHLNTRVGK-D-----------------------IPLEEL------REKHDAVFLSTGFT--LGR 382 (604)
T ss_pred HHHHHHHHHCCc--EEECCCEeCC-c-----------------------CCHHHH------HhcCCEEEEEcCcC--CCc
Confidence 444456667787 7777776631 0 111111 34699999999964 467
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchh----hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCC-CCCcEEEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKE----AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGP-EGQPCTMIV 232 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~----~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~-~~~~Vtl~~ 232 (511)
.+++| |.+. . .++++.++...... .......+++|+|||||.+|+|+|..+++.+... ...+|+++.
T Consensus 383 ~l~i~---G~~~-~-gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 383 STRIP---GTDH-P-DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred cCCCC---CcCC-c-CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 77788 5432 1 23333333110000 0001134789999999999999999998764210 012477764
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=183.11 Aligned_cols=166 Identities=19% Similarity=0.295 Sum_probs=110.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||++||++|..| .|++|+|||+.+.+||.|.+ ..|.. ....++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~-gip~~------------------------~l~~~~~ 363 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF-GIPPF------------------------KLDKTVL 363 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec-cCCcc------------------------cCCHHHH
Confidence 458999999999999999999 89999999999999998876 22221 1123455
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.....++.+|+ .++++++|.. + +++.+. ...||+||+|||+. .+.
T Consensus 364 ~~~~~~~~~~Gv--~~~~~~~v~~-----~-------------------~~~~~l------~~~~DaV~latGa~--~~~ 409 (639)
T PRK12809 364 SQRREIFTAMGI--DFHLNCEIGR-----D-------------------ITFSDL------TSEYDAVFIGVGTY--GMM 409 (639)
T ss_pred HHHHHHHHHCCe--EEEcCCccCC-----c-------------------CCHHHH------HhcCCEEEEeCCCC--CCC
Confidence 555566777887 7777776521 0 112111 34689999999975 455
Q ss_pred CCCCCCCCCCCcccceEEeccccC--------ccch--hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYC--------KLDK--EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~--------~~~~--~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
.+.+| |.+. .| ++++.+|. .... ........+|+|+|||+|.+|+|.|..+.+.+. ++||+
T Consensus 410 ~~~i~---g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga----~~Vt~ 480 (639)
T PRK12809 410 RADLP---HEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA----ASVTC 480 (639)
T ss_pred CCCCC---CCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC----CeEEE
Confidence 56677 4332 22 33221111 0000 000123468999999999999999998887764 35999
Q ss_pred EEecCc
Q 010421 231 IVRTTH 236 (511)
Q Consensus 231 ~~R~~~ 236 (511)
+.|+..
T Consensus 481 v~rr~~ 486 (639)
T PRK12809 481 AYRRDE 486 (639)
T ss_pred eeecCc
Confidence 999764
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=163.89 Aligned_cols=319 Identities=17% Similarity=0.156 Sum_probs=182.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccccCCC-CCCCC---CCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYEFTDF-PWPNR---DDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 76 (511)
.+||+|||+||+|..||... .|++-+++|++..+||++... ..|+-.+-..+++|..... .+... .+..-...
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 58999999999999999999 999999999999999998651 3444333222222221111 00000 01111223
Q ss_pred HHHHHHHHHHHHhcC--CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 77 TEILDYLESYAKHFD--VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+.++.-....++++. +...+. .-+|+-+.-. +.+ .+.-+|.+...+ ++.+.+.++.+|+|||+
T Consensus 119 ~~~~~~k~~~vk~Lt~gi~~lfk-knkV~~~kG~----------gsf---~~p~~V~v~k~d-g~~~ii~aKnIiiATGS 183 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGIENLFK-KNKVTYVKGF----------GSF---LDPNKVSVKKID-GEDQIIKAKNIIIATGS 183 (506)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhh-hcCeEEEeee----------Eee---cCCceEEEeccC-CCceEEeeeeEEEEeCC
Confidence 334433333333321 100011 1123322210 000 111235554432 34558999999999996
Q ss_pred cCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 155 YGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 155 ~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
. .+. +| |+..-..+++.|..-..+ ..-+|+++|||+|.+|.|+..-..+.+.. ||++.--
T Consensus 184 e--V~~---~P---GI~IDekkIVSStgALsL-------~~vPk~~~viG~G~IGLE~gsV~~rLGse-----VT~VEf~ 243 (506)
T KOG1335|consen 184 E--VTP---FP---GITIDEKKIVSSTGALSL-------KEVPKKLTVIGAGYIGLEMGSVWSRLGSE-----VTVVEFL 243 (506)
T ss_pred c--cCC---CC---CeEecCceEEecCCccch-------hhCcceEEEEcCceeeeehhhHHHhcCCe-----EEEEEeh
Confidence 3 444 44 444323345555444443 25679999999999999999999999876 9999765
Q ss_pred CceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccc
Q 010421 235 THWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDY 314 (511)
Q Consensus 235 ~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 314 (511)
+. +.+.. |..
T Consensus 244 ~~-i~~~m-------D~E-------------------------------------------------------------- 253 (506)
T KOG1335|consen 244 DQ-IGGVM-------DGE-------------------------------------------------------------- 253 (506)
T ss_pred hh-hcccc-------CHH--------------------------------------------------------------
Confidence 54 22221 111
Q ss_pred ccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc-----EEEc---CCc--eeeccEEEEecCCCCcccccccCCCcc
Q 010421 315 ASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG-----LEFE---DNT--KLEADVVILCTGYDGKKKLKAFLPEPF 383 (511)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~-----v~~~---dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~ 383 (511)
++..+...+++.+++++.+. +...+.++ |.+. +|. .++||+++.|+|.+|=. +-|+.+-
T Consensus 254 -------isk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t---~GLgle~ 323 (506)
T KOG1335|consen 254 -------ISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT---EGLGLEK 323 (506)
T ss_pred -------HHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc---cCCChhh
Confidence 11112223444456666654 44444322 3333 333 48999999999999743 2222221
Q ss_pred cccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCCC
Q 010421 384 QSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 384 ~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.++..+..+.+.+.. -+.+.+|||+.||..... ...+-||-|+..+...+.|..
T Consensus 324 iGi~~D~r~rv~v~~-~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~ 378 (506)
T KOG1335|consen 324 IGIELDKRGRVIVNT-RFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH 378 (506)
T ss_pred cccccccccceeccc-cccccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence 222223444443333 356788999999987653 445789999999999888763
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=172.37 Aligned_cols=165 Identities=22% Similarity=0.297 Sum_probs=106.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||++|+++|..| .|++|+|||+.+.+||...+ ..| .+....++..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~-gip------------------------~~~~~~~~~~ 197 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY-GIP------------------------NMKLDKAIVD 197 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec-cCC------------------------CccCCHHHHH
Confidence 47999999999999999999 89999999999988886544 111 1111233444
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
...+.++.+++ .+++++.|.. + +.... ....||.||+|||.. .|..
T Consensus 198 ~~~~~~~~~Gv--~~~~~~~v~~-~-----------------------~~~~~------~~~~~d~VilAtGa~--~~~~ 243 (485)
T TIGR01317 198 RRIDLLSAEGI--DFVTNTEIGV-D-----------------------ISADE------LKEQFDAVVLAGGAT--KPRD 243 (485)
T ss_pred HHHHHHHhCCC--EEECCCEeCC-c-----------------------cCHHH------HHhhCCEEEEccCCC--CCCc
Confidence 44455666787 7777776631 1 11000 135699999999964 4777
Q ss_pred CCCCCCCCCCcccceEEeccccCc------cch---hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCK------LDK---EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~------~~~---~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
+.+| |.+. .| +....++.. ... ........+|+|+|||+|.+|+|+|..+.+.+. +.|+++.
T Consensus 244 l~i~---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga----~~V~vv~ 314 (485)
T TIGR01317 244 LPIP---GREL-KG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGA----ASVHQFE 314 (485)
T ss_pred CCCC---CcCC-CC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC----CEEEEEE
Confidence 7788 5431 22 222211100 000 000112578999999999999999888887764 2599998
Q ss_pred ecCc
Q 010421 233 RTTH 236 (511)
Q Consensus 233 R~~~ 236 (511)
+.+.
T Consensus 315 ~~~~ 318 (485)
T TIGR01317 315 IMPK 318 (485)
T ss_pred ecCC
Confidence 7654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=168.38 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=109.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
+.++|+||||||||++||..| .|++|+|||+.+.+||...+.. .+.++....
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv------------------------aP~~~~~k~ 80 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV------------------------APDHPETKN 80 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc------------------------CCCcchhHH
Confidence 357899999999999999999 3899999999999999776511 123333455
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+...+..+.+..++ .++.|.+|- . .+++.+. ...||.||+|||+. .
T Consensus 81 v~~~~~~~~~~~~v--~~~~nv~vg---~---------------------dvtl~~L------~~~yDaVIlAtGa~--~ 126 (491)
T PLN02852 81 VTNQFSRVATDDRV--SFFGNVTLG---R---------------------DVSLSEL------RDLYHVVVLAYGAE--S 126 (491)
T ss_pred HHHHHHHHHHHCCe--EEEcCEEEC---c---------------------cccHHHH------hhhCCEEEEecCCC--C
Confidence 66666666666555 444444331 1 1333322 24699999999964 3
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccc---h---hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC----------
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLD---K---EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG---------- 222 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~---~---~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~---------- 222 (511)
++.+.+| |.+. . .++.+.++.... . ........+++|+|||+|.+|+|+|..|++.+..
T Consensus 127 ~~~l~Ip---G~d~-~-gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~ 201 (491)
T PLN02852 127 DRRLGIP---GEDL-P-GVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHA 201 (491)
T ss_pred CCCCCCC---CCCC-C-CeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHH
Confidence 4566777 5432 1 244443331100 0 0001124689999999999999999998764100
Q ss_pred ------CCCCcEEEEEecCc
Q 010421 223 ------PEGQPCTMIVRTTH 236 (511)
Q Consensus 223 ------~~~~~Vtl~~R~~~ 236 (511)
...++|+++.|+..
T Consensus 202 l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 202 LEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred HHHHhhCCCCEEEEEEcCCh
Confidence 12357999999873
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=171.66 Aligned_cols=287 Identities=16% Similarity=0.198 Sum_probs=181.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCC---
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFP--- 74 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 74 (511)
++.+++|||.|++|..+..++ .-++|++|-..+++ .|.-..+ ++.++
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~-------nY~Ri~L------------------s~vl~~~~ 56 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP-------NYNRILL------------------SSVLAGEK 56 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc-------cccceee------------------ccccCCCc
Confidence 357899999999999999998 33689999887766 4544433 11221
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+.+++.---.++.++.++ +++.+.+|+.|++. ++ .|+.+.+. ++.||+||+|||
T Consensus 57 ~~edi~l~~~dwy~~~~i--~L~~~~~v~~idr~--~k----------------~V~t~~g~-----~~~YDkLilATG- 110 (793)
T COG1251 57 TAEDISLNRNDWYEENGI--TLYTGEKVIQIDRA--NK----------------VVTTDAGR-----TVSYDKLIIATG- 110 (793)
T ss_pred cHHHHhccchhhHHHcCc--EEEcCCeeEEeccC--cc----------------eEEccCCc-----EeecceeEEecC-
Confidence 344544444566777888 89999999999983 11 46666665 889999999999
Q ss_pred cCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 155 YGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 155 ~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
+.|.+|++| |.+.+. ++--..+.+......- ....++-+|||+|.-|+|.|..|...+-. +++++=.
T Consensus 111 --S~pfi~PiP---G~~~~~--v~~~R~i~D~~am~~~-ar~~~~avVIGGGLLGlEaA~~L~~~Gm~-----~~Vvh~~ 177 (793)
T COG1251 111 --SYPFILPIP---GSDLPG--VFVYRTIDDVEAMLDC-ARNKKKAVVIGGGLLGLEAARGLKDLGME-----VTVVHIA 177 (793)
T ss_pred --ccccccCCC---CCCCCC--eeEEecHHHHHHHHHH-HhccCCcEEEccchhhhHHHHHHHhCCCc-----eEEEeec
Confidence 568888899 666442 2222333332211111 23456689999999999999999998865 7877665
Q ss_pred CceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccc
Q 010421 235 THWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDY 314 (511)
Q Consensus 235 ~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 314 (511)
+..+-.+. .......+.
T Consensus 178 ~~lMerQL---------------------------------------D~~ag~lL~------------------------ 194 (793)
T COG1251 178 PTLMERQL---------------------------------------DRTAGRLLR------------------------ 194 (793)
T ss_pred chHHHHhh---------------------------------------hhHHHHHHH------------------------
Confidence 53111000 000011111
Q ss_pred ccccccccCCchhhhhccCeEEEEeCc-eeEEe----CCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 315 ASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW----KGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~----~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
..+.+.+++++.+. ..++. ..+|.|+||+++++|.||+|+|++|+..+... .++..+
T Consensus 195 -------------~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~-----aGlavn 256 (793)
T COG1251 195 -------------RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKE-----AGLAVN 256 (793)
T ss_pred -------------HHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHh-----cCcCcC
Confidence 12333344444432 12221 24589999999999999999999999765321 111112
Q ss_pred CCCcccceeeecCCCCCceEEEeeccc-----chhhhhHHHHHHHHHHHhcCC
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIES-----VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~-----~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+ ++.+..++ .+..|++|++|-... .+....+=-|++.+|..+.+.
T Consensus 257 r--GIvvnd~m-qTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~ 306 (793)
T COG1251 257 R--GIVVNDYM-QTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGG 306 (793)
T ss_pred C--Ceeecccc-cccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccC
Confidence 2 44455544 367899999994322 122233445899999988775
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=167.99 Aligned_cols=195 Identities=20% Similarity=0.230 Sum_probs=119.6
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCcc--ccCCCcCceeccCCCCccccCCCC--CCCC--------
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGI--WKSCSYNSTKLQSHRSDYEFTDFP--WPNR-------- 68 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~--w~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------- 68 (511)
++|+|||||++|+++|.+| ..++|+|||++..+|.. |.. .-++..++++...++.+..+ +-.|
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~-~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD-EENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC-CCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 5899999999999999999 34689999999888843 332 12222222221112211110 0000
Q ss_pred -----------CCCCCCChHHHHHHHHHHHHhc-------CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 69 -----------DDPGFPSYTEILDYLESYAKHF-------DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 69 -----------~~~~~~~~~~~~~yl~~~~~~~-------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
....|+++..+.+|+++..+.+ +..-.++.+++|++++.. ++.|.|
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~----------------~~g~~V 144 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQIT----------------NAGVML 144 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEe----------------CCEEEE
Confidence 0246788888888887765543 211145667899999873 456777
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHH
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAI 210 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~ 210 (511)
++.++. . .+.+|+||+|||+. .|..+. +.. -+....|.... .....+.+|+|+|.|.|++
T Consensus 145 ~t~~gg--~--~i~aD~VVLAtGh~--~p~~~~-----~~~-----~yi~~pw~~~~----~~~i~~~~V~I~GtGLt~i 204 (534)
T PRK09897 145 ATNQDL--P--SETFDLAVIATGHV--WPDEEE-----ATR-----TYFPSPWSGLM----EAKVDACNVGIMGTSLSGL 204 (534)
T ss_pred EECCCC--e--EEEcCEEEECCCCC--CCCCCh-----hhc-----cccCCCCcchh----hcCCCCCeEEEECCCHHHH
Confidence 765431 1 68999999999975 343321 111 11123332210 1123478999999999999
Q ss_pred HHHHHHHHhcCC--------------C--CCCcEEEEEecCc
Q 010421 211 DLAKECAESNQG--------------P--EGQPCTMIVRTTH 236 (511)
Q Consensus 211 d~a~~l~~~~~~--------------~--~~~~Vtl~~R~~~ 236 (511)
|++..|...++. | ...+++++.|++.
T Consensus 205 D~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 205 DAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred HHHHHHHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 999999865311 0 1246999999875
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-16 Score=144.99 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=124.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcC--CCCcCccccCCCcCceec---cCCCCccccC-----------CCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA--SDSIGGIWKSCSYNSTKL---QSHRSDYEFT-----------DFP 64 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~--~~~~GG~w~~~~~~~~~~---~~~~~~~~~~-----------~~~ 64 (511)
..+|++|||||.+||+||+++ .|.+|.++|- -.-.|-.|.. -+... ..|+.+|.-. .+.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGl---GGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGL---GGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCcccc---CceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 358999999999999999999 9999999983 2224444543 11111 2466665432 233
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeee-EEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEE
Q 010421 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNS-KVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY 143 (511)
Q Consensus 65 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 143 (511)
|.-.....-+....+.+-.++-.+..+.--.+.++. +|.-+..- +.+ -+..++...+.+ ++...+
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~Nsy----------geF---v~~h~I~at~~~-gk~~~~ 160 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSY----------GEF---VDPHKIKATNKK-GKERFL 160 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecc----------eee---cccceEEEecCC-CceEEe
Confidence 332211233445556666666665555421233322 33333321 001 223455555544 345578
Q ss_pred EeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCC
Q 010421 144 GFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGP 223 (511)
Q Consensus 144 ~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 223 (511)
.++.+||||| ..|++|+|| |...+ .+.|.+..++ .+...+-+|||+|..|.|.|..|+..+..
T Consensus 161 ta~~fvIatG---~RPrYp~Ip---G~~Ey---~ITSDDlFsl-------~~~PGkTLvVGa~YVaLECAgFL~gfg~~- 223 (503)
T KOG4716|consen 161 TAENFVIATG---LRPRYPDIP---GAKEY---GITSDDLFSL-------PYEPGKTLVVGAGYVALECAGFLKGFGYD- 223 (503)
T ss_pred ecceEEEEec---CCCCCCCCC---Cceee---eecccccccc-------cCCCCceEEEccceeeeehhhhHhhcCCC-
Confidence 9999999999 689999999 75433 4666766653 25567789999999999999999999876
Q ss_pred CCCcEEEEEecC
Q 010421 224 EGQPCTMIVRTT 235 (511)
Q Consensus 224 ~~~~Vtl~~R~~ 235 (511)
||+..|+-
T Consensus 224 ----vtVmVRSI 231 (503)
T KOG4716|consen 224 ----VTVMVRSI 231 (503)
T ss_pred ----cEEEEEEe
Confidence 99999973
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=148.18 Aligned_cols=175 Identities=18% Similarity=0.210 Sum_probs=124.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||+||+|-+||.+. +|++.-++- +++||+-.. .+.+ -.|- +-.+..+.++..
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvld----T~~I------ENfI--------sv~~teGpkl~~ 270 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLD----TMGI------ENFI--------SVPETEGPKLAA 270 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeecc----ccch------hhee--------ccccccchHHHH
Confidence 58999999999999999998 888764442 237776443 0000 0111 223345778888
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
-|+.-.++|++ .+.--.+++.+.+... ..+...|+++++. .+.++.||+|||+. ++-
T Consensus 271 ale~Hv~~Y~v--Dimn~qra~~l~~a~~-------------~~~l~ev~l~nGa-----vLkaktvIlstGAr---WRn 327 (520)
T COG3634 271 ALEAHVKQYDV--DVMNLQRASKLEPAAV-------------EGGLIEVELANGA-----VLKARTVILATGAR---WRN 327 (520)
T ss_pred HHHHHHhhcCc--hhhhhhhhhcceecCC-------------CCccEEEEecCCc-----eeccceEEEecCcc---hhc
Confidence 89999999987 5555557777777421 1456788998886 78999999999965 344
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
-.+| |.+.|..+-+.-+..++ ...++||+|+|||||+||+|.|-.|+....+ ||++.=.+
T Consensus 328 ~nvP---GE~e~rnKGVayCPHCD------GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~h-----VtllEF~~ 387 (520)
T COG3634 328 MNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEH-----VTLLEFAP 387 (520)
T ss_pred CCCC---chHHHhhCCeeeCCCCC------CcccCCceEEEECCCcchHHHHHhHHhhhhe-----eeeeecch
Confidence 5567 77777655444344444 4579999999999999999999999987654 88875443
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-14 Score=139.59 Aligned_cols=40 Identities=33% Similarity=0.371 Sum_probs=37.0
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+||||||||++||.+| .+++|+|||+.+.+||.+++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 46899999999999999987 68999999999999999887
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-14 Score=131.14 Aligned_cols=170 Identities=18% Similarity=0.269 Sum_probs=107.1
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
.++|+|||+||||+++|..| .+++|.|+|+.+.+.|.-++.. .+..+.-..+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV------------------------APDHpEvKnv 75 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV------------------------APDHPEVKNV 75 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc------------------------CCCCcchhhH
Confidence 46899999999999999999 4589999999998888766511 1333333444
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
..-+...+++-.. .+..|.+|- . .|.+... +-.||.||+|.|+. .+
T Consensus 76 intFt~~aE~~rf--sf~gNv~vG---~---------------------dvsl~eL------~~~ydavvLaYGa~--~d 121 (468)
T KOG1800|consen 76 INTFTKTAEHERF--SFFGNVKVG---R---------------------DVSLKEL------TDNYDAVVLAYGAD--GD 121 (468)
T ss_pred HHHHHHHhhccce--EEEecceec---c---------------------cccHHHH------hhcccEEEEEecCC--CC
Confidence 4555556665332 222232321 0 1333332 45799999999985 68
Q ss_pred CCCCCCCCCCCCcccceEEeccccCc-----cchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC------------
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCK-----LDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG------------ 222 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~-----~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~------------ 222 (511)
+..+|| |.+. . .++.+..+.. ........++.+.+|+|||.|..|+|+|.-|......
T Consensus 122 R~L~IP---Ge~l-~-~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL 196 (468)
T KOG1800|consen 122 RRLDIP---GEEL-S-GVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLAL 196 (468)
T ss_pred cccCCC---Cccc-c-cceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHH
Confidence 888999 5441 1 1333332211 0000112346789999999999999999877643211
Q ss_pred -----CCCCcEEEEEecCc
Q 010421 223 -----PEGQPCTMIVRTTH 236 (511)
Q Consensus 223 -----~~~~~Vtl~~R~~~ 236 (511)
.+-+.|+++.|+..
T Consensus 197 ~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 197 NLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred hhhhcCCcceEEEEeccCc
Confidence 12466888888763
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=151.34 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
+.++|+|||||||||+||..| .|++|+|||+....|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 457999999999999999999 9999999999765444
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-13 Score=136.76 Aligned_cols=287 Identities=17% Similarity=0.150 Sum_probs=166.5
Q ss_pred EEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 7 IAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 7 v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++|||+|++|+.+|..+ .+.+++++.+..... |..+ +.+..........+++..+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~-------~~~~--------------~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS-------YYRC--------------PLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC-------CCCC--------------ccchHHhcccCCHHHhccc
Confidence 58999999999999977 667888888765431 1110 1111100111111111111
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP 162 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p 162 (511)
.. ...+.++ .++.+++|++++.... .|.+.++ .+.+|++|+|||. .|..+
T Consensus 60 ~~-~~~~~~i--~~~~~~~v~~id~~~~------------------~v~~~~g------~~~yd~LvlatGa---~~~~~ 109 (415)
T COG0446 60 PR-FNRATGI--DVRTGTEVTSIDPENK------------------VVLLDDG------EIEYDYLVLATGA---RPRPP 109 (415)
T ss_pred ch-hHHhhCC--EEeeCCEEEEecCCCC------------------EEEECCC------cccccEEEEcCCC---cccCC
Confidence 11 1134455 7888899999987311 3555554 6889999999995 45554
Q ss_pred CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 163 AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 163 ~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
... .. ..+.....+...... .......++|+|+|+|..|+++|..+.+.+.+ |+++.+.+.+..+..
T Consensus 110 ~~~---~~----~~~~~~~~~~~~~~~-~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~-----v~l~e~~~~~~~~~~ 176 (415)
T COG0446 110 PIS---DW----EGVVTLRLREDAEAL-KGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKK-----VTLIEAADRLGGQLL 176 (415)
T ss_pred Ccc---cc----CceEEECCHHHHHHH-HHHHhccCeEEEECCcHHHHHHHHHHHHcCCe-----EEEEEcccccchhhh
Confidence 311 11 112222222221100 01111257999999999999999999999865 999999875321110
Q ss_pred ccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccccc
Q 010421 243 RIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIM 322 (511)
Q Consensus 243 ~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~ 322 (511)
. . .+
T Consensus 177 ~-----------~-----------------------------------------------------------------~~ 180 (415)
T COG0446 177 D-----------P-----------------------------------------------------------------EV 180 (415)
T ss_pred h-----------H-----------------------------------------------------------------HH
Confidence 0 0 00
Q ss_pred CCchhhhhccCeEEEEeCc-eeEEeCCc-------EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 323 PEGFFSEAEKGKIVFKRAS-KWWFWKGG-------LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 323 ~~~~~~~l~~g~v~v~~~~-i~~~~~~~-------v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
.+.+.+.+++.+|+++.+. +.+++.+. +...++..+++|.++.++|.+++..+.+.- ... .....+.+
T Consensus 181 ~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~---~~~-~~~~~g~i 256 (415)
T COG0446 181 AEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA---LPG-LALAGGAV 256 (415)
T ss_pred HHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhC---ccc-eeccCCCE
Confidence 0111123344446666554 56666543 577888999999999999999985443211 100 11233345
Q ss_pred cceeeecCCCCCceEEEeeccc-----------chhhhhHHHHHHHHHHHhcCC
Q 010421 395 PLYRGTIHPLIPNMAFVGYIES-----------VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.+...+.....+++|.+|.... ...+..+..|++.++..+.+.
T Consensus 257 ~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 257 LVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred EEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 5665554335899999996322 122356888888888888753
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=143.10 Aligned_cols=158 Identities=25% Similarity=0.312 Sum_probs=103.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++|+|||+||+||+||.+| .|+.|+|+||.+++||...+ ..|++.+ ...+.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y-gipnmkl------------------------dk~vv 1838 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY-GIPNMKL------------------------DKFVV 1838 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee-cCCccch------------------------hHHHH
Confidence 357999999999999999999 99999999999999999887 5555544 12244
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.-.+...+-|+ .+..|+++-.- |.+... .-..|.||+|+|+. .|+
T Consensus 1839 ~rrv~ll~~egi--~f~tn~eigk~------------------------vs~d~l------~~~~daiv~a~gst--~pr 1884 (2142)
T KOG0399|consen 1839 QRRVDLLEQEGI--RFVTNTEIGKH------------------------VSLDEL------KKENDAIVLATGST--TPR 1884 (2142)
T ss_pred HHHHHHHHhhCc--eEEeecccccc------------------------ccHHHH------hhccCeEEEEeCCC--CCc
Confidence 444455555666 55555444211 221111 34589999999985 788
Q ss_pred CCCCCCCCCCCc----ccceEEeccccCccch--hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC
Q 010421 161 IPAFPNNKGPEV----FEGQVLHSIDYCKLDK--EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 161 ~p~~~~~~g~~~----~~g~~~hs~~~~~~~~--~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
-..+| |-+. |.-..+|...-.-++. +..-...+||+|+|||||.+|-|....-.+++.+
T Consensus 1885 dlpv~---grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1885 DLPVP---GRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred CCCCC---CccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence 77788 5432 2222333321110100 0001235899999999999999988777777653
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.3e-14 Score=140.57 Aligned_cols=162 Identities=27% Similarity=0.353 Sum_probs=113.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+||||||+||++|..| .|++|+++|+.+.+||...+ .. +.|.-..++.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y-GI------------------------P~~kl~k~i~d 177 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY-GI------------------------PDFKLPKDILD 177 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe-cC------------------------chhhccchHHH
Confidence 47999999999999999999 99999999999999998766 22 23333456677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
....+.++.++ .++.+++|-. .++++.. ...+|.|++|||.. .|+.
T Consensus 178 ~~i~~l~~~Gv--~~~~~~~vG~------------------------~it~~~L------~~e~Dav~l~~G~~--~~~~ 223 (457)
T COG0493 178 RRLELLERSGV--EFKLNVRVGR------------------------DITLEEL------LKEYDAVFLATGAG--KPRP 223 (457)
T ss_pred HHHHHHHHcCe--EEEEcceECC------------------------cCCHHHH------HHhhCEEEEecccc--CCCC
Confidence 77777888886 7787776631 1222222 23569999999984 7888
Q ss_pred CCCCCCCCCCcccceEEeccccCccch-h-------hhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDK-E-------AASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~-~-------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
.++| |.+. ..+..+.+|..... . ......++|+|+|||+|.||+|++....+.+.. +|+.+.|
T Consensus 224 l~i~---g~d~--~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~----~v~~~~~ 294 (457)
T COG0493 224 LDIP---GEDA--KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAK----SVTCFYR 294 (457)
T ss_pred CCCC---CcCC--CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCe----EEEEecc
Confidence 8888 5431 12333333321100 0 001223569999999999999999888887753 6888864
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.9e-12 Score=110.14 Aligned_cols=126 Identities=25% Similarity=0.342 Sum_probs=93.4
Q ss_pred EEECCCHHHHHHHHhc--c-----CCCcEEEcCCCCc-CccccCCCcCceeccCCCCccccC-CCC---CCC--------
Q 010421 8 AIIGAGVSGLAAVKQL--R-----HHNPVVFEASDSI-GGIWKSCSYNSTKLQSHRSDYEFT-DFP---WPN-------- 67 (511)
Q Consensus 8 ~IIGaG~aGl~aa~~l--~-----g~~v~v~e~~~~~-GG~w~~~~~~~~~~~~~~~~~~~~-~~~---~~~-------- 67 (511)
+|||+|++|++++.+| . ..+|+|||++... |+.|.....+...+|++...|+.. +-| |.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999 3 4579999996553 467877447778899998888753 322 111
Q ss_pred ----CCCCCCCChHHHHHHHHHHHHhcC--CCC--c-eEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCC
Q 010421 68 ----RDDPGFPSYTEILDYLESYAKHFD--VFK--C-VRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSN 138 (511)
Q Consensus 68 ----~~~~~~~~~~~~~~yl~~~~~~~~--~~~--~-i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 138 (511)
.....|+++..+.+||+++.+.+- +.. . .+...+|++|+.. ++.|.|.+.++.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~----------------~~~~~v~~~~g~-- 142 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRD----------------DDGYRVVTADGQ-- 142 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEc----------------CCcEEEEECCCC--
Confidence 113578999999999998887642 111 2 2346789999884 455888887775
Q ss_pred ceeEEEeCEEEEeecc
Q 010421 139 SIQRYGFEFLVVCTGK 154 (511)
Q Consensus 139 ~~~~~~~d~vVlAtG~ 154 (511)
.+.||+||+|||+
T Consensus 143 ---~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 143 ---SIRADAVVLATGH 155 (156)
T ss_pred ---EEEeCEEEECCCC
Confidence 7899999999996
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=113.90 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=36.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++++|||||++||+||..| .|++++++|+++.+||....
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 46899999999999999999 99999999999999997543
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=113.93 Aligned_cols=250 Identities=17% Similarity=0.231 Sum_probs=142.6
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccC---------CCCCCCCC--
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT---------DFPWPNRD-- 69 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-- 69 (511)
...+|||+|.+..+++... .+.+|.++...... |.++-..++.+.-+. +-+|....
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepel---------PYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRs 249 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL---------PYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERS 249 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccC---------cccCCCcchhceecCCCChhhheeecccCCccce
Confidence 4579999999998888877 56678887765543 222222222222111 11111100
Q ss_pred -----CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 70 -----DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 70 -----~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
...|.+.+++-. +.+=|+ .+..+.+|+.|+-.+ -.|.++++. ++.
T Consensus 250 iffepd~FfvspeDLp~-----~~nGGv--Avl~G~kvvkid~~d------------------~~V~LnDG~-----~I~ 299 (659)
T KOG1346|consen 250 IFFEPDGFFVSPEDLPK-----AVNGGV--AVLRGRKVVKIDEED------------------KKVILNDGT-----TIG 299 (659)
T ss_pred eEecCCcceeChhHCcc-----cccCce--EEEeccceEEeeccc------------------CeEEecCCc-----Eee
Confidence 133444443321 112233 455677888877531 158888876 899
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCccc-ceEEec-cccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC
Q 010421 145 FEFLVVCTGKYGDVPIIPAFPNNKGPEVFE-GQVLHS-IDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~-g~~~hs-~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
||+++|||| ..|+..+.-...+.+.-. -.++|. .+|+.+. .....-++|.|||+|..|-|+|..|.+...+
T Consensus 300 YdkcLIATG---~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rle----k~~aek~siTIiGnGflgSELacsl~rk~r~ 372 (659)
T KOG1346|consen 300 YDKCLIATG---VRPKKLQVFEEASEEVKQKITYFRYPADFKRLE----KGLAEKQSITIIGNGFLGSELACSLKRKYRN 372 (659)
T ss_pred hhheeeecC---cCcccchhhhhcCHHhhhheeEEecchHHHHHH----HhhhhcceEEEEcCcchhhhHHHHHHHhhhc
Confidence 999999999 456554322111222111 123332 3444322 1112337899999999999999999987542
Q ss_pred CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccC
Q 010421 223 PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKY 302 (511)
Q Consensus 223 ~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
++.+|+.+.... -|+... +..|+.
T Consensus 373 -~g~eV~QvF~Ek-----------~nm~ki------------------------------------LPeyls-------- 396 (659)
T KOG1346|consen 373 -EGVEVHQVFEEK-----------YNMEKI------------------------------------LPEYLS-------- 396 (659)
T ss_pred -cCcEEEEeeccc-----------CChhhh------------------------------------hHHHHH--------
Confidence 234455543321 111111 111111
Q ss_pred CCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--CCc--EEEcCCceeeccEEEEecCCCCcccccc
Q 010421 303 GLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGG--LEFEDNTKLEADVVILCTGYDGKKKLKA 377 (511)
Q Consensus 303 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~ 377 (511)
.--.+.+++++|.|+.+. |.++. .+. +.++||.++..|+||.|+|-.||..+..
T Consensus 397 ---------------------~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 397 ---------------------QWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred ---------------------HHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 001256788888888876 44432 223 5678999999999999999999987654
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-11 Score=117.26 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=95.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC--------ccccCC---CcCceeccCC---CCcc----ccC-
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG--------GIWKSC---SYNSTKLQSH---RSDY----EFT- 61 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G--------G~w~~~---~~~~~~~~~~---~~~~----~~~- 61 (511)
+.+||+|||||||||.||..+ .|.+|+|||+.+.+| |.++.. .+..+..+.| +.++ .|.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 468999999999999999999 899999999999886 334331 1222333344 2111 111
Q ss_pred ----------CCCCCC-CCCCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 62 ----------DFPWPN-RDDPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 62 ----------~~~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
+.++.. .....|| ....+.+-|..-+++.++ .++.+++|.+++.. +..
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~----------------~~~ 143 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKD----------------DSG 143 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEec----------------Cce
Confidence 011111 1124455 367788888888888999 99999999999983 456
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+.|.+.++. ++.||.||+|||..| .|.+
T Consensus 144 f~l~t~~g~-----~i~~d~lilAtGG~S-~P~l 171 (408)
T COG2081 144 FRLDTSSGE-----TVKCDSLILATGGKS-WPKL 171 (408)
T ss_pred EEEEcCCCC-----EEEccEEEEecCCcC-CCCC
Confidence 788887775 799999999999873 5644
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=101.50 Aligned_cols=162 Identities=22% Similarity=0.303 Sum_probs=98.8
Q ss_pred eEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
+.+|||||+||.+||.+| +..+|+++..++-+ .....-..+.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v---------------------------------ksvtn~~~i~~ 47 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV---------------------------------KSVTNYQKIGQ 47 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH---------------------------------HHHhhHHHHHH
Confidence 368999999999999999 66789998886443 11223345555
Q ss_pred HHHHHHHhcCCCCc------eEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKC------VRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~------i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
|++ +|++.+. -.|.+-+.++... + +....+.++++. .+.|++|++|||
T Consensus 48 yle----kfdv~eq~~~elg~~f~~~~~~v~~~------~---------s~ehci~t~~g~-----~~ky~kKOG~tg-- 101 (334)
T KOG2755|consen 48 YLE----KFDVKEQNCHELGPDFRRFLNDVVTW------D---------SSEHCIHTQNGE-----KLKYFKLCLCTG-- 101 (334)
T ss_pred HHH----hcCccccchhhhcccHHHHHHhhhhh------c---------cccceEEecCCc-----eeeEEEEEEecC--
Confidence 554 3333210 1122112222211 0 333467888876 899999999999
Q ss_pred CCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 156 GDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 156 ~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..|..- .. |.+ ..++-..+-.+.. .......+.|+|+|+|.|-++.|.+.++... .|+|....+
T Consensus 102 -~kPklq-~E---~~n---~~Iv~irDtDsaQ-llq~kl~kaK~VlilgnGgia~El~yElk~~-------nv~w~ikd~ 165 (334)
T KOG2755|consen 102 -YKPKLQ-VE---GIN---PKIVGIRDTDSAQ-LLQCKLVKAKIVLILGNGGIAMELTYELKIL-------NVTWKIKDE 165 (334)
T ss_pred -CCccee-ec---CCC---ceEEEEecCcHHH-HHHHHHhhcceEEEEecCchhHHHHHHhhcc-------eeEEEecch
Confidence 456543 12 212 1344433332211 1113456889999999999999999999754 388888854
Q ss_pred ceeecCcc
Q 010421 236 HWTVPHYR 243 (511)
Q Consensus 236 ~~~~p~~~ 243 (511)
|+...+.
T Consensus 166 -~IsaTFf 172 (334)
T KOG2755|consen 166 -GISATFF 172 (334)
T ss_pred -hhhhccc
Confidence 4555443
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=115.74 Aligned_cols=133 Identities=22% Similarity=0.331 Sum_probs=72.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC--------ccccCC----CcCceecc---CCCCcc----ccC--
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG--------GIWKSC----SYNSTKLQ---SHRSDY----EFT-- 61 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G--------G~w~~~----~~~~~~~~---~~~~~~----~~~-- 61 (511)
|||+|||||+|||.||..+ .|.+|+|+||++.+| |.++.. .+...... .+..+. .|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 6899999999999999999 999999999999886 333320 01111111 111110 010
Q ss_pred ---------CCCCC-CCCCCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 62 ---------DFPWP-NRDDPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 62 ---------~~~~~-~~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
..+.. +.....|| ...++.+-|...+++.++ .++++++|.+++.. +++.|
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~---------------~~~~f 143 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKK---------------EDGVF 143 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEE---------------TTEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeec---------------CCcee
Confidence 01111 00012233 467788888888888998 99999999999873 14457
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.|.+++.. .+.||.||+|||..| .|.
T Consensus 144 ~v~~~~~~-----~~~a~~vILAtGG~S-~p~ 169 (409)
T PF03486_consen 144 GVKTKNGG-----EYEADAVILATGGKS-YPK 169 (409)
T ss_dssp EEEETTTE-----EEEESEEEE----SS-SGG
T ss_pred EeeccCcc-----cccCCEEEEecCCCC-ccc
Confidence 78773332 899999999999873 454
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=110.68 Aligned_cols=132 Identities=18% Similarity=0.220 Sum_probs=86.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc----ccC-C-------------------CcCceeccCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI----WKS-C-------------------SYNSTKLQSH 54 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~----w~~-~-------------------~~~~~~~~~~ 54 (511)
|.+.+||+|||||++|+++|..| .|++|+|+|+++.+... ... + ......+..+
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 77889999999999999999999 89999999997653211 000 0 0000111001
Q ss_pred CCccccCCCCCCC----C-CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 55 RSDYEFTDFPWPN----R-DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 55 ~~~~~~~~~~~~~----~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
... .+..++.+. . .......+.++.+++.+.+++.++ .++++++|++++.. ++.+.
T Consensus 81 ~g~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~~~~ 141 (375)
T PRK06847 81 DGT-LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQD----------------DDGVT 141 (375)
T ss_pred CCC-EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEc----------------CCEEE
Confidence 000 000111110 0 012234678888999998888887 89999999999873 34567
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
|.+.++. ++.+|.||.|+|.+|
T Consensus 142 v~~~~g~-----~~~ad~vI~AdG~~s 163 (375)
T PRK06847 142 VTFSDGT-----TGRYDLVVGADGLYS 163 (375)
T ss_pred EEEcCCC-----EEEcCEEEECcCCCc
Confidence 7766554 789999999999875
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7e-11 Score=108.32 Aligned_cols=151 Identities=28% Similarity=0.360 Sum_probs=83.2
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH--H
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL--D 81 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 81 (511)
||+|||||+||+.||.+| .+.+++|+|+.+..... .. ..+.... . ........+. +
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~-~~~~~~~-------~-----------~~~~~~~~~~~~~ 60 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SG-CIPSPLL-------V-----------EIAPHRHEFLPAR 60 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HS-HHHHHHH-------H-----------HHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-cc-ccccccc-------c-----------ccccccccccccc
Confidence 799999999999999999 89999999887543210 00 0000000 0 0000000111 0
Q ss_pred --HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 82 --YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 82 --yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+.+..+..++ .++++++|.+++..... + ....+.+..... +...++.||+||+|||. .|
T Consensus 61 ~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~--------~---~~~~~~~~~~~~--~~~~~~~~d~lviAtG~---~~ 122 (201)
T PF07992_consen 61 LFKLVDQLKNRGV--EIRLNAKVVSIDPESKR--------V---VCPAVTIQVVET--GDGREIKYDYLVIATGS---RP 122 (201)
T ss_dssp HGHHHHHHHHHTH--EEEHHHTEEEEEESTTE--------E---EETCEEEEEEET--TTEEEEEEEEEEEESTE---EE
T ss_pred ccccccccccceE--EEeeccccccccccccc--------c---ccCcccceeecc--CCceEecCCeeeecCcc---cc
Confidence 22222244555 66788999999873110 0 001123322222 23348999999999994 57
Q ss_pred CCCCCCCCCCCC--cccceEEeccccCccchhhhhhccCCCcEEEEC
Q 010421 160 IIPAFPNNKGPE--VFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVG 204 (511)
Q Consensus 160 ~~p~~~~~~g~~--~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG 204 (511)
+.|.+| |.+ .+...+.++..+.. .....++|+|||
T Consensus 123 ~~~~i~---g~~~~~~~~~~~~~~~~~~-------~~~~~~~v~VvG 159 (201)
T PF07992_consen 123 RTPNIP---GEEVAYFLRGVDDAQRFLE-------LLESPKRVAVVG 159 (201)
T ss_dssp EEESST---TTTTECBTTSEEHHHHHHT-------HSSTTSEEEEES
T ss_pred ceeecC---CCccccccccccccccccc-------cccccccccccc
Confidence 777888 542 12123444444433 223345999999
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-09 Score=101.83 Aligned_cols=136 Identities=22% Similarity=0.181 Sum_probs=84.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc-ccCC-CcCceeccCC-CCccccCCCCCCCCCC-CCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI-WKSC-SYNSTKLQSH-RSDYEFTDFPWPNRDD-PGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~-w~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 77 (511)
.+||+||||||+|++||..| .|++|+|+|++..+||. |... .++...+..+ ...+.-...++..... .....+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 47999999999999999999 89999999999888763 4321 1222111110 0011111122221101 1224567
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEe------CCCCceeEEEeCEEEE
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQT------HNSNSIQRYGFEFLVV 150 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~------~~~~~~~~~~~d~vVl 150 (511)
++...|...+.+.+. .++++++|+++...+ +++ +-+.+.. +......++.++.||+
T Consensus 105 ~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~~~---------------~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 105 EAAAKLAAAAIDAGA--KIFNGVSVEDVILRE---------------DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred HHHHHHHHHHHHcCC--EEEcCceeceeeEeC---------------CCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 777888888888888 899999999987631 211 2222221 1111234789999999
Q ss_pred eecccC
Q 010421 151 CTGKYG 156 (511)
Q Consensus 151 AtG~~~ 156 (511)
|||+.+
T Consensus 168 ATG~~a 173 (257)
T PRK04176 168 ATGHDA 173 (257)
T ss_pred EeCCCc
Confidence 999874
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.1e-09 Score=105.71 Aligned_cols=132 Identities=15% Similarity=0.185 Sum_probs=82.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-CC---cCccccCC--------------CcCceeccCCCCccccCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-DS---IGGIWKSC--------------SYNSTKLQSHRSDYEFTDFP 64 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~~---~GG~w~~~--------------~~~~~~~~~~~~~~~~~~~~ 64 (511)
+||+||||||+|+++|..| .|++|+|+|++ .. .||..... .+.+..+..|.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 6999999999999999999 89999999997 22 22221111 11112222222110001111
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC---CCCcee
Q 010421 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH---NSNSIQ 141 (511)
Q Consensus 65 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~ 141 (511)
.+... .....+..+.++|.+.+.+.+. .++. ++|+++... ++.+.|++.++ .+++..
T Consensus 81 ~~~~~-~~~~~r~~fd~~L~~~a~~~G~--~v~~-~~v~~v~~~----------------~~~~~v~~~~~~~~~~~~~~ 140 (388)
T TIGR02023 81 SEDGY-VGMVRREVFDSYLRERAQKAGA--ELIH-GLFLKLERD----------------RDGVTLTYRTPKKGAGGEKG 140 (388)
T ss_pred CCCCc-eEeeeHHHHHHHHHHHHHhCCC--EEEe-eEEEEEEEc----------------CCeEEEEEEeccccCCCcce
Confidence 11100 1126788899999999888887 6654 468888762 45677877652 122334
Q ss_pred EEEeCEEEEeecccC
Q 010421 142 RYGFEFLVVCTGKYG 156 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~ 156 (511)
++.+|.||.|+|.+|
T Consensus 141 ~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 141 SVEADVVIGADGANS 155 (388)
T ss_pred EEEeCEEEECCCCCc
Confidence 789999999999875
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=103.01 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=83.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCC----------cCceec-cCCCCccccC------CCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCS----------YNSTKL-QSHRSDYEFT------DFPW 65 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~----------~~~~~~-~~~~~~~~~~------~~~~ 65 (511)
+||+|||||++|+++|..| .|++|+|+|+...++..+.... .++... ........+. ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 5899999999999999999 8999999999887655333210 000000 0000000000 1111
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 66 PNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 66 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
+.. ......+.++.+.+.+.+.+.+. .+.++++|+++... ++.+++.+.++ + .++.+
T Consensus 81 ~~~-~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~----------------~~~~~~~~~~~--~--~~~~a 137 (295)
T TIGR02032 81 ETE-LAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIH----------------DDRVVVIVRGG--E--GTVTA 137 (295)
T ss_pred CCC-cEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEe----------------CCEEEEEEcCc--c--EEEEe
Confidence 111 12235678888999988888887 89999999998873 33445554432 1 26899
Q ss_pred CEEEEeecccC
Q 010421 146 EFLVVCTGKYG 156 (511)
Q Consensus 146 d~vVlAtG~~~ 156 (511)
|.||+|+|.++
T Consensus 138 ~~vv~a~G~~s 148 (295)
T TIGR02032 138 KIVIGADGSRS 148 (295)
T ss_pred CEEEECCCcch
Confidence 99999999864
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-09 Score=97.71 Aligned_cols=122 Identities=25% Similarity=0.423 Sum_probs=80.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCC----------------------------
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSH---------------------------- 54 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~---------------------------- 54 (511)
.+|+|||+|++|++||..| .|.+|+||||+..+||.....+.++...+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 3799999999999999999 9999999999999999776644444333221
Q ss_pred CCccccCCCCCCC-CCCCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 55 RSDYEFTDFPWPN-RDDPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
...++|.+-..+. .....|. .-..+.+|| +. ++ .|.++++|+.+.+. ++.|++
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L---At--dL--~V~~~~rVt~v~~~----------------~~~W~l 138 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL---AT--DL--TVVLETRVTEVART----------------DNDWTL 138 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHH---hc--cc--hhhhhhhhhhheec----------------CCeeEE
Confidence 1222232211111 0001122 222333332 22 34 78999999999984 678999
Q ss_pred EEEeCCCCceeEEEeCEEEEeec
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+.+++.+ ...+|.||||.=
T Consensus 139 ~~~~g~~----~~~~d~vvla~P 157 (331)
T COG3380 139 HTDDGTR----HTQFDDVVLAIP 157 (331)
T ss_pred EecCCCc----ccccceEEEecC
Confidence 9977642 578999999875
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=106.58 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=82.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC-------ccccC--------CCcCcee-----ccCCC---Cc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG-------GIWKS--------CSYNSTK-----LQSHR---SD 57 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G-------G~w~~--------~~~~~~~-----~~~~~---~~ 57 (511)
..+||+||||||+|+++|..| .|++|+|+|+.+... +.+.. ..++.+. ..... ..
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 358999999999999999999 999999999976431 11111 0000000 00000 00
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC
Q 010421 58 YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS 137 (511)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (511)
+.+...+.... .........+.+.|.+.+++.++ .++++++|++++.. ++.+.|++.++.
T Consensus 82 ~~~~~~~~~~~-~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~----------------~~~v~v~~~~g~- 141 (488)
T PRK06834 82 LDISDFPTRHN-YGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQD----------------DTGVDVELSDGR- 141 (488)
T ss_pred cccccCCCCCC-ccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEc----------------CCeEEEEECCCC-
Confidence 11111111100 01223456777888888888887 89999999999873 345666654432
Q ss_pred CceeEEEeCEEEEeecccC
Q 010421 138 NSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~ 156 (511)
++.+|+||.|.|.+|
T Consensus 142 ----~i~a~~vVgADG~~S 156 (488)
T PRK06834 142 ----TLRAQYLVGCDGGRS 156 (488)
T ss_pred ----EEEeCEEEEecCCCC
Confidence 789999999999886
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.1e-09 Score=105.52 Aligned_cols=133 Identities=13% Similarity=0.065 Sum_probs=83.1
Q ss_pred CC-CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc------ccCC----CcCceeccCC-------------
Q 010421 1 MA-NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI------WKSC----SYNSTKLQSH------------- 54 (511)
Q Consensus 1 m~-~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~------w~~~----~~~~~~~~~~------------- 54 (511)
|+ ..+||+||||||+|++||..| .|++|+|+||.+.+|.. .... .+|.+....|
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 80 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFM 80 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEE
Confidence 54 358999999999999999999 89999999998776532 1110 1111110001
Q ss_pred --CCcc--ccCCCCCCC-CCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 55 --RSDY--EFTDFPWPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 55 --~~~~--~~~~~~~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
.... .+....... ........+.++.++|.+.+++.+. .++.+++|+++... ++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~----------------~g~v~ 142 (428)
T PRK10157 81 TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQR----------------DGKVV 142 (428)
T ss_pred cCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEe----------------CCEEE
Confidence 0000 111000000 0001224678888999999988888 88999999998862 33333
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+...++. ++.+|.||+|+|..+
T Consensus 143 ~v~~~g~-----~i~A~~VI~A~G~~s 164 (428)
T PRK10157 143 GVEADGD-----VIEAKTVILADGVNS 164 (428)
T ss_pred EEEcCCc-----EEECCEEEEEeCCCH
Confidence 3222332 789999999999763
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-09 Score=105.77 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=81.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC----c-------cccC--------CCcCceec--cCCCC---
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG----G-------IWKS--------CSYNSTKL--QSHRS--- 56 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G----G-------~w~~--------~~~~~~~~--~~~~~--- 56 (511)
..+||+|||||++|+++|..| .|++|+|+|+.+... + .+.. ..++.+.- ..+..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 458999999999999999999 899999999976431 1 0000 00111000 00000
Q ss_pred --------ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 57 --------DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 57 --------~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
...|...............+..+.+.|.+.+++.++ .+.++++|++++.. ++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~----------------~~~v 146 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQD----------------ADRV 146 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEec----------------CCeE
Confidence 011111000000001123456777777777777787 88999999999873 4456
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+|++.++. ++.+|.||.|+|..|
T Consensus 147 ~v~~~~g~-----~~~a~~vV~AdG~~S 169 (392)
T PRK08773 147 RLRLDDGR-----RLEAALAIAADGAAS 169 (392)
T ss_pred EEEECCCC-----EEEeCEEEEecCCCc
Confidence 77665543 789999999999874
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-09 Score=105.96 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=80.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc------------------cccC-----CCcCceeccCCCC-
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG------------------IWKS-----CSYNSTKLQSHRS- 56 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG------------------~w~~-----~~~~~~~~~~~~~- 56 (511)
+.+||+|||||++|+++|..| .|++|+|+|+.+..+. .|.. ..+..+.+..+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 347999999999999999999 8999999999765421 1111 0011111111110
Q ss_pred c-----cccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 57 D-----YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 57 ~-----~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
. ..|..................+.+.+.+.+.+++. ..+++++|++++.. ++.|.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~--~~~~~~~v~~i~~~----------------~~~~~v~ 147 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPN--ITRFGDEAESVRPR----------------EDEVTVT 147 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCC--cEEECCeeEEEEEc----------------CCeEEEE
Confidence 0 00110000000001124566777777777766653 34889999999873 4567777
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++++. ++.+|.||.|+|..|
T Consensus 148 ~~~g~-----~~~a~~vI~AdG~~S 167 (388)
T PRK07494 148 LADGT-----TLSARLVVGADGRNS 167 (388)
T ss_pred ECCCC-----EEEEeEEEEecCCCc
Confidence 76543 789999999999875
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=99.16 Aligned_cols=137 Identities=20% Similarity=0.174 Sum_probs=85.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC-ccccCC-CcCceeccCCC-CccccCCCCCCCCCC-CCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG-GIWKSC-SYNSTKLQSHR-SDYEFTDFPWPNRDD-PGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G-G~w~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 77 (511)
.+||+||||||+|+++|..| .|++|+|+||+..+| |.|... .++.+.+..+. ..+.....++..... .....+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 47999999999999999999 899999999999886 455431 23322222111 111111223221110 1123567
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCC-CceEEEEEe------CCCCceeEEEeCEEEE
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGH-PVWEVAVQT------HNSNSIQRYGFEFLVV 150 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~------~~~~~~~~~~~d~vVl 150 (511)
++...|...+.+.+. .+.++++|+++...++ . ...-|.+.. +......++.++.||.
T Consensus 101 el~~~L~~~a~e~GV--~I~~~t~V~dli~~~~--------------~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd 164 (254)
T TIGR00292 101 EFISTLASKALQAGA--KIFNGTSVEDLITRDD--------------TVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD 164 (254)
T ss_pred HHHHHHHHHHHHcCC--EEECCcEEEEEEEeCC--------------CCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence 888888888888887 8899999999887311 1 011122211 1111234789999999
Q ss_pred eecccC
Q 010421 151 CTGKYG 156 (511)
Q Consensus 151 AtG~~~ 156 (511)
|||+.+
T Consensus 165 ATG~~a 170 (254)
T TIGR00292 165 ATGHDA 170 (254)
T ss_pred eecCCc
Confidence 999763
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=106.71 Aligned_cols=132 Identities=19% Similarity=0.186 Sum_probs=82.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc------ccC------------------CCcCceeccCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI------WKS------------------CSYNSTKLQSHRSD 57 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~------w~~------------------~~~~~~~~~~~~~~ 57 (511)
.+||+||||||+|+++|..| .|++|+|+|+.+...-. +.. ..++..........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 47999999999999999999 99999999997654210 000 00111110000000
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC
Q 010421 58 YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS 137 (511)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (511)
..+...+.+.. .........+.+.|.+.+++.++ .++++++|++++.. ++..++++++.+
T Consensus 82 ~~~~~~~~~~~-~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~~v~v~~~~~~- 141 (493)
T PRK08244 82 LDFSALDTSSN-YTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQD----------------GDGVEVVVRGPD- 141 (493)
T ss_pred CCcccCCCCCC-cEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEc----------------CCeEEEEEEeCC-
Confidence 11111110000 01223566778888888888887 79999999999873 344566665432
Q ss_pred CceeEEEeCEEEEeecccC
Q 010421 138 NSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~ 156 (511)
+ ..++.+|+||.|.|..|
T Consensus 142 g-~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 142 G-LRTLTSSYVVGADGAGS 159 (493)
T ss_pred c-cEEEEeCEEEECCCCCh
Confidence 2 23789999999999875
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-09 Score=106.15 Aligned_cols=135 Identities=15% Similarity=0.177 Sum_probs=79.1
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-----CccccC--C---------CcCceec-cCCCC------
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-----GGIWKS--C---------SYNSTKL-QSHRS------ 56 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-----GG~w~~--~---------~~~~~~~-~~~~~------ 56 (511)
+..+||+|||||++|+++|..| .|++|+|+|+++.. |..... + ..+.+.- ..+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 95 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSD 95 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEe
Confidence 3458999999999999999999 89999999998754 211110 0 0000000 00100
Q ss_pred -----ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 57 -----DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 57 -----~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
...+..................+.+.|.+.+... ++ .++++++|++++.. ++.+.|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~v~~~----------------~~~~~v 157 (415)
T PRK07364 96 ADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI--TWLCPAEVVSVEYQ----------------QDAATV 157 (415)
T ss_pred CCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEec----------------CCeeEE
Confidence 1111111010000001122345666666666554 45 68889999999862 445677
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccC
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.+++ ...++.+|.||.|.|.+|
T Consensus 158 ~~~~~~--~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 158 TLEIEG--KQQTLQSKLVVAADGARS 181 (415)
T ss_pred EEccCC--cceEEeeeEEEEeCCCCc
Confidence 776432 223689999999999885
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-09 Score=105.80 Aligned_cols=134 Identities=18% Similarity=0.150 Sum_probs=84.0
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-----C-----------------C--cC--ceeccCC-C
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-----C-----------------S--YN--STKLQSH-R 55 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-----~-----------------~--~~--~~~~~~~-~ 55 (511)
+||+|||||++|+++|..| .|++|+|||+++........ + . .. ....... .
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 6999999999999999999 89999999998765211110 0 0 00 0000000 0
Q ss_pred Cc-------cccCCCCCCCC-CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 56 SD-------YEFTDFPWPNR-DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 56 ~~-------~~~~~~~~~~~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
.. ....++..... .......+.++.+.|.+.++..++ .++++++|++++.. .+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d----------------~~~ 143 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQD----------------DDG 143 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEE----------------TTE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeeccccccc----------------ccc
Confidence 00 00000000000 011224578899999999998887 89999999998873 344
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++.+.+..+++.+++++|.||.|.|.+|
T Consensus 144 ~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 144 VTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp EEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred cccccccccCCceeEEEEeeeecccCccc
Confidence 56777777666667899999999999886
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.5e-09 Score=104.41 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=81.2
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCc----eec-----cCCCCccccC--CCCCCCCCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNS----TKL-----QSHRSDYEFT--DFPWPNRDDPG 72 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~----~~~-----~~~~~~~~~~--~~~~~~~~~~~ 72 (511)
||+|||||++|+++|..| .|++|+|+|+++.+|+......++. +.+ +.-...+.+. ...........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 799999999999999999 8999999999888876432211111 100 0000111111 11100000011
Q ss_pred CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 73 FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 73 ~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
...+..+.+++.+.+.+.++ .+ +.++|+.+... +++.|.|++.++. ++.+|.||.|+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv--~~-~~~~v~~i~~~---------------~~~~~~v~~~~g~-----~~~a~~VI~A~ 137 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGV--LW-LERKAIHAEAD---------------GVALSTVYCAGGQ-----RIQARLVIDAR 137 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCc--EE-EccEEEEEEec---------------CCceeEEEeCCCC-----EEEeCEEEECC
Confidence 25678888999888887776 44 46688888762 1456777776553 78999999999
Q ss_pred ccc
Q 010421 153 GKY 155 (511)
Q Consensus 153 G~~ 155 (511)
|..
T Consensus 138 G~~ 140 (388)
T TIGR01790 138 GFG 140 (388)
T ss_pred CCc
Confidence 976
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=104.39 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=81.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---c----------------------cccC------CCcC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---G----------------------IWKS------CSYN 47 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G----------------------~w~~------~~~~ 47 (511)
|+ .+||+||||||+|+++|..| .|++|+|+|+.+.+. | .|.. ..+.
T Consensus 1 m~-~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~ 79 (400)
T PRK08013 1 MQ-SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH 79 (400)
T ss_pred CC-cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence 53 58999999999999999999 899999999977532 1 0100 0001
Q ss_pred ceeccCCC--CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCC
Q 010421 48 STKLQSHR--SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124 (511)
Q Consensus 48 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 124 (511)
++.+..+. ....+...............+..+.+.|.+.+... ++ .++++++|++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~---------------- 141 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI--TLLAPAELQQVAWG---------------- 141 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEec----------------
Confidence 11111010 00111100000000011245667777777777665 46 78999999999873
Q ss_pred CCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 125 ~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.++|++.++. ++.+|.||-|.|.+|
T Consensus 142 ~~~v~v~~~~g~-----~i~a~lvVgADG~~S 168 (400)
T PRK08013 142 ENEAFLTLKDGS-----MLTARLVVGADGANS 168 (400)
T ss_pred CCeEEEEEcCCC-----EEEeeEEEEeCCCCc
Confidence 334567766553 799999999999886
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=104.74 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=80.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-----CccccCCCcCceec------cCCCCccccCC-CCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-----GGIWKSCSYNSTKL------QSHRSDYEFTD-FPWPNRD 69 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-----GG~w~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~ 69 (511)
.+||+||||||||+++|..| .|++|+|+|+++.. .|.|.. .+..+.+ ..+.....+.+ .......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~-~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVD-EFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHH-HHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 47999999999999999999 89999999997542 233322 1100000 00111111110 0000000
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEE
Q 010421 70 DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLV 149 (511)
Q Consensus 70 ~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 149 (511)
......+.++.+++.+.+...++ .+. .++|++++.. ++.+.|+++++. ++.+|.||
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~----------------~~~~~V~~~dG~-----~i~A~lVI 162 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHE----------------ESKSLVVCDDGV-----KIQASLVL 162 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEc----------------CCeEEEEECCCC-----EEEcCEEE
Confidence 11224678888888888877776 453 5789998873 445678777654 79999999
Q ss_pred EeecccC
Q 010421 150 VCTGKYG 156 (511)
Q Consensus 150 lAtG~~~ 156 (511)
.|+|..+
T Consensus 163 ~AdG~~s 169 (447)
T PLN02463 163 DATGFSR 169 (447)
T ss_pred ECcCCCc
Confidence 9999864
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=104.69 Aligned_cols=134 Identities=17% Similarity=0.160 Sum_probs=82.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc------cccC------------------CCcCceeccCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG------IWKS------------------CSYNSTKLQSHRS 56 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG------~w~~------------------~~~~~~~~~~~~~ 56 (511)
..+||+||||||+||++|..| .|++|+|+|+.+.+.. .+.. ..++......+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 357999999999999999999 9999999999875521 1100 0111111111001
Q ss_pred cc-c--cCC-C-CCCC-CC-CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 57 DY-E--FTD-F-PWPN-RD-DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 57 ~~-~--~~~-~-~~~~-~~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
.. . +.. . +.+. .. .....+...+.+.|.+.+.+.++ .++++++|++++.. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~----------------~~~v~ 143 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQD----------------ADGVT 143 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEc----------------CCcEE
Confidence 00 0 000 0 0000 00 01123455667777777777777 89999999999873 34466
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++.+.+++ .++.+|+||.|+|.+|
T Consensus 144 v~~~~~~~~--~~i~a~~vVgADG~~S 168 (502)
T PRK06184 144 ARVAGPAGE--ETVRARYLVGADGGRS 168 (502)
T ss_pred EEEEeCCCe--EEEEeCEEEECCCCch
Confidence 666543322 3789999999999986
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-08 Score=101.25 Aligned_cols=135 Identities=11% Similarity=0.135 Sum_probs=81.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC------------------CcCceeccCCCCcc-ccCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC------------------SYNSTKLQSHRSDY-EFTDF 63 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~------------------~~~~~~~~~~~~~~-~~~~~ 63 (511)
+||+||||||+|++||..| .|++|+|+|+....+..+... ...+..+..|.... .+. .
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~-~ 79 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIG-R 79 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEec-c
Confidence 4899999999999999999 899999999976543222110 11111111221110 001 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC----CCc
Q 010421 64 PWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN----SNS 139 (511)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~ 139 (511)
..+....-....+..+.++|.+.+.+.|. .++.+ ++.++....+ .++.+.|++...+ .++
T Consensus 80 ~~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~-~~~~i~~~~~-------------~~~~~~v~~~~~~~~~~~g~ 143 (398)
T TIGR02028 80 TLKEHEYIGMLRREVLDSFLRRRAADAGA--TLING-LVTKLSLPAD-------------ADDPYTLHYISSDSGGPSGT 143 (398)
T ss_pred CCCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcc-eEEEEEeccC-------------CCceEEEEEeeccccccCCC
Confidence 11110001125788889999999998888 67655 4777654211 1455677654321 123
Q ss_pred eeEEEeCEEEEeecccC
Q 010421 140 IQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~ 156 (511)
..++.+|.||.|+|..|
T Consensus 144 ~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 144 RCTLEVDAVIGADGANS 160 (398)
T ss_pred ccEEEeCEEEECCCcch
Confidence 34789999999999875
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=104.42 Aligned_cols=133 Identities=22% Similarity=0.217 Sum_probs=82.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc------ccC--------CCcCcee-ccCCCCccccCC-
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI------WKS--------CSYNSTK-LQSHRSDYEFTD- 62 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~------w~~--------~~~~~~~-~~~~~~~~~~~~- 62 (511)
|.+..||+|||||++|+++|..| .|++|+|+||.+.++.. +.. ...+.+. ...+...+.+.+
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 80 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDA 80 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeC
Confidence 77788999999999999999999 89999999998765421 000 0000000 000001111100
Q ss_pred --------CCCCC----CC--CCCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 63 --------FPWPN----RD--DPGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 63 --------~~~~~----~~--~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
.+... .. ......+.++.+.|.+.+.+.+ + .++++++|++++.. ++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~~~~~~~v~~i~~~----------------~~~ 142 (396)
T PRK08163 81 VDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLV--EFRTSTHVVGIEQD----------------GDG 142 (396)
T ss_pred CCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCc--EEEeCCEEEEEecC----------------CCc
Confidence 01110 00 0012356677777777666554 5 68889999999862 345
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.|++.++. ++.+|.||.|.|..|
T Consensus 143 v~v~~~~g~-----~~~ad~vV~AdG~~S 166 (396)
T PRK08163 143 VTVFDQQGN-----RWTGDALIGCDGVKS 166 (396)
T ss_pred eEEEEcCCC-----EEecCEEEECCCcCh
Confidence 667665543 789999999999875
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=102.05 Aligned_cols=125 Identities=20% Similarity=0.272 Sum_probs=78.3
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc---ccC--C-------------------CcCceeccCCCCccc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI---WKS--C-------------------SYNSTKLQSHRSDYE 59 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~---w~~--~-------------------~~~~~~~~~~~~~~~ 59 (511)
+|+|||||++|+++|..| .|++|+|+|+++.+.-. ... + ..+......+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 799999999999999999 99999999998765311 000 0 0011111111100 0
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCc
Q 010421 60 FTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS 139 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (511)
+...++..........+..+.+.|.+.++. . .++++++|++++.. ++.++|+++++.
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~----------------~~~v~v~~~~g~--- 137 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENE----------------TDKVTIHFADGE--- 137 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEec----------------CCcEEEEECCCC---
Confidence 111111111011234667777777665542 2 68999999999862 456777776654
Q ss_pred eeEEEeCEEEEeecccC
Q 010421 140 IQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~ 156 (511)
++.+|.||.|.|.+|
T Consensus 138 --~~~~~~vigadG~~S 152 (373)
T PRK06753 138 --SEAFDLCIGADGIHS 152 (373)
T ss_pred --EEecCEEEECCCcch
Confidence 789999999999875
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-08 Score=104.32 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=84.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC------------------------CcCceeccCCCC-
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC------------------------SYNSTKLQSHRS- 56 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~------------------------~~~~~~~~~~~~- 56 (511)
.+||+||||||+|+++|..| .|++|+|+|+...+....... ...+........
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 57999999999999999999 899999999987654221110 011111111110
Q ss_pred -ccccCCCCCCC--CC-CCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 57 -DYEFTDFPWPN--RD-DPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 57 -~~~~~~~~~~~--~~-~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
...+.. +... .+ ........++.++|.+.+.++ ++ .++++++|++++.. ++.++|+
T Consensus 90 ~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~----------------~~~v~v~ 150 (538)
T PRK06183 90 CLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQD----------------DDGVTVT 150 (538)
T ss_pred EEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEc----------------CCeEEEE
Confidence 111110 1000 00 012234566777887777665 66 79999999999873 3456777
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++. +++..++.+|+||.|.|.+|
T Consensus 151 ~~~~-~G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 151 LTDA-DGQRETVRARYVVGCDGANS 174 (538)
T ss_pred EEcC-CCCEEEEEEEEEEecCCCch
Confidence 7643 23345799999999999986
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=102.87 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=85.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-C---------CcCcee--ccC--CCCccccCC----
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-C---------SYNSTK--LQS--HRSDYEFTD---- 62 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~---------~~~~~~--~~~--~~~~~~~~~---- 62 (511)
+.+||+||||||||++||..| .|++|+|+|+.+.+|.--.. . ..+... +.. ....+.+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 468999999999999999999 88999999999888742111 0 011110 000 000000110
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 63 FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
+..+.. ......+..+.++|...+++.+. .+..+++|..+... ++.+.+.+..++ .+
T Consensus 82 ~~~~~~-~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~----------------~~~~~~~~~~~~----~e 138 (396)
T COG0644 82 IEVPVG-EGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIRE----------------DDGVVVGVRAGD----DE 138 (396)
T ss_pred EecCCC-ceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEe----------------CCcEEEEEEcCC----EE
Confidence 000000 12224578888899999999998 89999999999984 333444444442 38
Q ss_pred EEeCEEEEeecccC
Q 010421 143 YGFEFLVVCTGKYG 156 (511)
Q Consensus 143 ~~~d~vVlAtG~~~ 156 (511)
+.++.||.|+|..+
T Consensus 139 ~~a~~vI~AdG~~s 152 (396)
T COG0644 139 VRAKVVIDADGVNS 152 (396)
T ss_pred EEcCEEEECCCcch
Confidence 99999999999764
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=102.93 Aligned_cols=130 Identities=14% Similarity=0.181 Sum_probs=78.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-------------CccccCC---------CcCceec--cCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-------------GGIWKSC---------SYNSTKL--QSHRSD 57 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-------------GG~w~~~---------~~~~~~~--~~~~~~ 57 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+.. ++....+ .++.+.- ..+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 47999999999999999999 89999999997621 1100000 0111100 011111
Q ss_pred cccCC------CCCCC---C--CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC
Q 010421 58 YEFTD------FPWPN---R--DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP 126 (511)
Q Consensus 58 ~~~~~------~~~~~---~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 126 (511)
+.+.+ ..+.. . ..........+.+-|.+.+++.++ .++++++|++++.. ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~ 143 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRS----------------GD 143 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEc----------------CC
Confidence 11100 00100 0 001123345566566565666666 78899999999873 44
Q ss_pred ceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 127 VWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 127 ~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.|.|++.++. ++.+|.||.|+|.+|
T Consensus 144 ~v~v~~~~g~-----~~~a~~vVgAdG~~S 168 (405)
T PRK05714 144 DWLLTLADGR-----QLRAPLVVAADGANS 168 (405)
T ss_pred eEEEEECCCC-----EEEeCEEEEecCCCc
Confidence 5777776553 789999999999875
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-08 Score=100.83 Aligned_cols=131 Identities=16% Similarity=0.126 Sum_probs=76.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc--------Ccc---ccC--------CCcCceec--cCCCCc--
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI--------GGI---WKS--------CSYNSTKL--QSHRSD-- 57 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~--------GG~---w~~--------~~~~~~~~--~~~~~~-- 57 (511)
+.+||+||||||+|+++|..| .|++|+|+|+.+.. |.. +.. ..+..+.. ..+...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 368999999999999999999 89999999997652 211 100 00000000 001000
Q ss_pred ---------cccCCCCCCCCCCCCCCChHHHHHHHHHHH-HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 58 ---------YEFTDFPWPNRDDPGFPSYTEILDYLESYA-KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 58 ---------~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
+.+..............+...+.+.+.+.+ +..++ .++++++|++++.. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~----------------~~~ 143 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTD----------------DDG 143 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEc----------------CCe
Confidence 111100000000011123444555444444 33466 79999999999863 445
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.|+++++. ++.+|.||.|+|.+|
T Consensus 144 ~~v~~~~g~-----~~~a~~vI~AdG~~S 167 (392)
T PRK09126 144 AQVTLANGR-----RLTARLLVAADSRFS 167 (392)
T ss_pred EEEEEcCCC-----EEEeCEEEEeCCCCc
Confidence 677776553 789999999999875
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-08 Score=102.57 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=83.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-----C---CcCceec-------cCC-----------
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-----C---SYNSTKL-------QSH----------- 54 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-----~---~~~~~~~-------~~~----------- 54 (511)
..++|+|||||++|+++|..| .|++|+|+|+.+...-.-.. + .+..+.+ -.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~ 85 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT 85 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence 347999999999999999999 99999999998653211000 0 0000000 000
Q ss_pred ----CCccc--cCCCC----C--------CCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCccc
Q 010421 55 ----RSDYE--FTDFP----W--------PNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTD 115 (511)
Q Consensus 55 ----~~~~~--~~~~~----~--------~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~ 115 (511)
..... +.... . .........+...+...|.+.+++. ++ .++++++|++++..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~------- 156 (545)
T PRK06126 86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQD------- 156 (545)
T ss_pred cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEEC-------
Confidence 00000 00000 0 0000012235566777777777654 56 79999999999873
Q ss_pred CCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 116 SGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 116 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.+++++.+..+++..++.+|+||.|+|.+|
T Consensus 157 ---------~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 157 ---------ADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred ---------CCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 34466777665555556789999999999986
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-08 Score=101.27 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=81.6
Q ss_pred CCC-CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-C-------------cC-----ceecc-----C
Q 010421 1 MAN-YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-S-------------YN-----STKLQ-----S 53 (511)
Q Consensus 1 m~~-~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~-------------~~-----~~~~~-----~ 53 (511)
|++ .+||+||||||+||++|..| .|++|+|+|+.+.+...-... . +. +..+. .
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA 80 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence 543 47999999999999999999 899999999987653111100 0 00 00000 0
Q ss_pred CCCccc--cCCCC-CCCC-C-CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 54 HRSDYE--FTDFP-WPNR-D-DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 54 ~~~~~~--~~~~~-~~~~-~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
...... +..+. .+.. . .....+...+.+.|.+.+++.++ .++++++|++++.. ++.+
T Consensus 81 ~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv--~v~~~~~v~~l~~~----------------~~~v 142 (487)
T PRK07190 81 NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA--AVKRNTSVVNIELN----------------QAGC 142 (487)
T ss_pred CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEc----------------CCee
Confidence 000000 00000 0000 0 01123456677778877888888 89999999999873 3345
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.+.+.+++ ++.+++||.|+|..|
T Consensus 143 ~v~~~~g~-----~v~a~~vVgADG~~S 165 (487)
T PRK07190 143 LTTLSNGE-----RIQSRYVIGADGSRS 165 (487)
T ss_pred EEEECCCc-----EEEeCEEEECCCCCH
Confidence 55554432 789999999999875
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-08 Score=100.90 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=80.5
Q ss_pred CeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCcc---------------------ccC-----CCcCceeccCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGI---------------------WKS-----CSYNSTKLQSH 54 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~---------------------w~~-----~~~~~~~~~~~ 54 (511)
+||+|||||++|+++|..| . |++|+|+|+.+..... |.. .....+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 7999999999999999999 5 4999999997642100 000 00000000000
Q ss_pred C-------CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 55 R-------SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 55 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
. ..+.+.....+.........+.++.+.|.+.+.+.++ .++++++|++++.. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~~ 143 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETR----------------DEG 143 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEc----------------CCE
Confidence 0 0011110000000001134678888888888888787 89999999999873 445
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.|++.++. ++.+|.||.|+|..|
T Consensus 144 v~v~~~~g~-----~~~ad~vI~AdG~~S 167 (403)
T PRK07333 144 VTVTLSDGS-----VLEARLLVAADGARS 167 (403)
T ss_pred EEEEECCCC-----EEEeCEEEEcCCCCh
Confidence 667765543 789999999999774
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-08 Score=101.10 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=79.6
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC--------ccccC--C---------CcCcee-----------ccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG--------GIWKS--C---------SYNSTK-----------LQS 53 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G--------G~w~~--~---------~~~~~~-----------~~~ 53 (511)
||+|||||++|+++|..| .|++|+|+|+...++ ..... + .++.+. ...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 699999999999999999 899999999987542 11110 0 000000 000
Q ss_pred CC--CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 54 HR--SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 54 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
.. ..+.+...............+.++.+.|.+.+.+.+ . .++++++|++++.. ++.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~----------------~~~~~v 142 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRH----------------SDHVEL 142 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEec----------------CCeeEE
Confidence 00 001111000000000122456777777777777766 6 78999999999873 455667
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccC
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++++. ++.+|.||.|.|..|
T Consensus 143 ~~~~g~-----~~~~~~vi~adG~~S 163 (385)
T TIGR01988 143 TLDDGQ-----QLRARLLVGADGANS 163 (385)
T ss_pred EECCCC-----EEEeeEEEEeCCCCC
Confidence 666553 689999999999875
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.4e-08 Score=102.27 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=82.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-----C---------CcCce----------e-ccCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-----C---------SYNST----------K-LQSHR 55 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-----~---------~~~~~----------~-~~~~~ 55 (511)
..+||+||||||+|+++|..| .|++|+|+|+++.+...... + ....+ . .....
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 457999999999999999999 89999999998765322110 0 00000 0 00001
Q ss_pred CccccCCCCCC-CCCC-CCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEE
Q 010421 56 SDYEFTDFPWP-NRDD-PGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAV 132 (511)
Q Consensus 56 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (511)
....+...+.. .... ........+.++|.+.+.+. ++ .++++++|++++.. ++.+++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v--~v~~~~~v~~i~~~----------------~~~v~v~~ 163 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI--DLRWKNKVTGLEQH----------------DDGVTLTV 163 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEEc----------------CCEEEEEE
Confidence 11111111100 0000 11135667778888877765 45 79999999999873 44566666
Q ss_pred EeCCCCceeEEEeCEEEEeecccC
Q 010421 133 QTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 133 ~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.++ ..++.+|+||.|+|.+|
T Consensus 164 ~~~~g--~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 164 ETPDG--PYTLEADWVIACDGARS 185 (547)
T ss_pred ECCCC--cEEEEeCEEEECCCCCc
Confidence 54322 23689999999999875
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-08 Score=100.83 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=82.1
Q ss_pred CCC-CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc------cccCC----CcCceeccCC------CCccccC
Q 010421 1 MAN-YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG------IWKSC----SYNSTKLQSH------RSDYEFT 61 (511)
Q Consensus 1 m~~-~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG------~w~~~----~~~~~~~~~~------~~~~~~~ 61 (511)
|+. .+||+||||||+|++||..| .|++|+|+||.+.+|. ..... ..|++....| ...+.+.
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 80 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL 80 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEE
Confidence 543 48999999999999999999 8999999999876542 11110 1222110000 0111110
Q ss_pred C------CCCCCC------CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 62 D------FPWPNR------DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 62 ~------~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
+ .++... .......+..+.++|.+.+++.+. .++.+++|+.+... ++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv--~i~~~~~V~~i~~~----------------~~~v~ 142 (429)
T PRK10015 81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA--QFIPGVRVDALVRE----------------GNKVT 142 (429)
T ss_pred eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCC--EEECCcEEEEEEEe----------------CCEEE
Confidence 0 011100 001223577888889888888888 88899999998762 33343
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
....++. ++.+|.||+|+|..+
T Consensus 143 ~v~~~~~-----~i~A~~VI~AdG~~s 164 (429)
T PRK10015 143 GVQAGDD-----ILEANVVILADGVNS 164 (429)
T ss_pred EEEeCCe-----EEECCEEEEccCcch
Confidence 2222221 789999999999764
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-08 Score=100.35 Aligned_cols=135 Identities=17% Similarity=0.243 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-----CccccCC---------CcC-----------ceeccCC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-----GGIWKSC---------SYN-----------STKLQSH 54 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-----GG~w~~~---------~~~-----------~~~~~~~ 54 (511)
.+.+||+|||||++|+++|..| .|++|+|+|+.+.. |..+... .++ .+.....
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 3568999999999999999999 99999999997543 2111110 001 1111001
Q ss_pred CC---ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 55 RS---DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 55 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
.. ...|...+.+.. ...+.....+.++|.+.+.+. ++ .+.++++|+++.... +....|
T Consensus 84 ~~~~~~~~~~~~~~~~~-~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~---------------~~v~~v 145 (407)
T PRK06185 84 GRTVTLADFSRLPTPYP-YIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG---------------GRVTGV 145 (407)
T ss_pred CeEEEecchhhcCCCCC-cEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC---------------CEEEEE
Confidence 10 011111111111 122345677888887777665 56 788899999998731 222234
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccC
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.+...+ + ..++.+|.||.|+|.+|
T Consensus 146 ~~~~~~-g-~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 146 RARTPD-G-PGEIRADLVVGADGRHS 169 (407)
T ss_pred EEEcCC-C-cEEEEeCEEEECCCCch
Confidence 444322 2 13689999999999875
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-08 Score=99.97 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=77.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccC--C-------------------CcCceeccCCCC--
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKS--C-------------------SYNSTKLQSHRS-- 56 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~--~-------------------~~~~~~~~~~~~-- 56 (511)
.||+|||||++|+++|..| .|++|+|+|+.+... ..+.. + ....+.+.....
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 3899999999999999999 899999999976542 11211 0 001111110100
Q ss_pred ccccCCCCCCCCCC--CCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe
Q 010421 57 DYEFTDFPWPNRDD--PGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT 134 (511)
Q Consensus 57 ~~~~~~~~~~~~~~--~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 134 (511)
...++...+..... .....+.++.+.|.+.... ++ .++++++|++++.. ++.++|++++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v--~i~~~~~v~~i~~~----------------~~~v~v~~~~ 141 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QV--ETIFDDSIATIDEH----------------RDGVRVTFER 141 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-Ce--EEEeCCEEeEEEEC----------------CCeEEEEECC
Confidence 01111000110000 1123456666666554332 44 79999999999873 4567787776
Q ss_pred CCCCceeEEEeCEEEEeecccC
Q 010421 135 HNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 135 ~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+. ++.+|.||.|.|..|
T Consensus 142 g~-----~~~~d~vIgADG~~S 158 (391)
T PRK07588 142 GT-----PRDFDLVIGADGLHS 158 (391)
T ss_pred CC-----EEEeCEEEECCCCCc
Confidence 54 678999999999876
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-08 Score=99.45 Aligned_cols=130 Identities=8% Similarity=0.066 Sum_probs=79.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccCC----------------CcCceec--cCCCCccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKSC----------------SYNSTKL--QSHRSDYE 59 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~~----------------~~~~~~~--~~~~~~~~ 59 (511)
+.+||+|||||++|+++|..| .|++|+|+|+..... ..|... ....+.. ..+...+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 468999999999999999999 899999999987652 222210 0000000 00111111
Q ss_pred cCC-----CCCC---CCCC--CCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 60 FTD-----FPWP---NRDD--PGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 60 ~~~-----~~~~---~~~~--~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
+.+ ..+. ...+ .....+..+.+.|.+.+++.+ + .+. +++|++++.. ++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~~~-~~~v~~i~~~----------------~~~~ 144 (388)
T PRK07608 84 VFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNL--TWF-PARAQGLEVD----------------PDAA 144 (388)
T ss_pred EEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCc--EEE-cceeEEEEec----------------CCeE
Confidence 100 0000 0000 011346677777877777765 4 455 8899998762 4456
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.|++.++. ++.+|.||.|+|..|
T Consensus 145 ~v~~~~g~-----~~~a~~vI~adG~~S 167 (388)
T PRK07608 145 TLTLADGQ-----VLRADLVVGADGAHS 167 (388)
T ss_pred EEEECCCC-----EEEeeEEEEeCCCCc
Confidence 77766553 789999999999875
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-08 Score=97.86 Aligned_cols=120 Identities=15% Similarity=0.190 Sum_probs=80.4
Q ss_pred eEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCc--Cc--cccCC-------------CcCceeccCCCCccccCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSI--GG--IWKSC-------------SYNSTKLQSHRSDYEFTDFP 64 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~--GG--~w~~~-------------~~~~~~~~~~~~~~~~~~~~ 64 (511)
||+|||||+||+++|.+| .|.+|+|+|++... .. +|... .|++..+..+........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~-- 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID-- 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcc--
Confidence 799999999999999999 78899999998776 22 23320 111111111111111110
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 65 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
.......+..+.+++...+...+ .+.++++|++|+.. ++.+.|.+.++. ++.
T Consensus 79 ----~~Y~~i~~~~f~~~l~~~~~~~~---~~~~~~~V~~i~~~----------------~~~~~v~~~~g~-----~i~ 130 (374)
T PF05834_consen 79 ----YPYCMIDRADFYEFLLERAAAGG---VIRLNARVTSIEET----------------GDGVLVVLADGR-----TIR 130 (374)
T ss_pred ----cceEEEEHHHHHHHHHHHhhhCC---eEEEccEEEEEEec----------------CceEEEEECCCC-----EEE
Confidence 01223578888888888877333 47889999999973 335667777765 899
Q ss_pred eCEEEEeeccc
Q 010421 145 FEFLVVCTGKY 155 (511)
Q Consensus 145 ~d~vVlAtG~~ 155 (511)
++.||-|+|..
T Consensus 131 a~~VvDa~g~~ 141 (374)
T PF05834_consen 131 ARVVVDARGPS 141 (374)
T ss_pred eeEEEECCCcc
Confidence 99999999954
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.1e-08 Score=100.34 Aligned_cols=133 Identities=16% Similarity=0.159 Sum_probs=76.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-CC--cCc--------cccC--------CCcCceec--cCCCCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-DS--IGG--------IWKS--------CSYNSTKL--QSHRSD 57 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~~--~GG--------~w~~--------~~~~~~~~--~~~~~~ 57 (511)
|+..+||+|||||++|+++|..| .|++|+|+|+. .. ++. .... ..++.+.- ..+...
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 80 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIA 80 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccE
Confidence 44578999999999999999999 89999999996 21 111 0000 00111100 001111
Q ss_pred cc-----------cCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCC
Q 010421 58 YE-----------FTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGH 125 (511)
Q Consensus 58 ~~-----------~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 125 (511)
+. |..................+.+.|.+.+... ++ .++++++|++++.. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v--~v~~~~~v~~i~~~----------------~ 142 (405)
T PRK08850 81 MEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNV--TLLMPARCQSIAVG----------------E 142 (405)
T ss_pred EEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCe--EEEcCCeeEEEEee----------------C
Confidence 11 1110000000001122445555555555443 45 68889999999863 3
Q ss_pred CceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 126 PVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 126 ~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.+.|++.+++ ++.+|.||.|.|.+|
T Consensus 143 ~~~~v~~~~g~-----~~~a~lvIgADG~~S 168 (405)
T PRK08850 143 SEAWLTLDNGQ-----ALTAKLVVGADGANS 168 (405)
T ss_pred CeEEEEECCCC-----EEEeCEEEEeCCCCC
Confidence 44567776554 799999999999875
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-08 Score=100.25 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=74.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc----Cccc--cCC---------CcCceeccCCCCccccC---C
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI----GGIW--KSC---------SYNSTKLQSHRSDYEFT---D 62 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~----GG~w--~~~---------~~~~~~~~~~~~~~~~~---~ 62 (511)
+.++|+|||||++|+++|..| .|++|+|+|+.+.. |+.- ..+ ..+......+.....+. +
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 357999999999999999999 89999999997642 2110 000 00000000011111110 0
Q ss_pred CCCCCC-CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 63 FPWPNR-DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 63 ~~~~~~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
...... ..........+.+.|. +.+.. ..++++++|++++.. ++.++|+++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~---~~~~~-~~i~~~~~v~~i~~~----------------~~~v~v~~~~g~----- 139 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALR---AAFPA-ERYHLGETLVGFEQD----------------GDRVTARFADGR----- 139 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHH---HhCCC-cEEEcCCEEEEEEec----------------CCeEEEEECCCC-----
Confidence 000000 0011123344444333 33321 258999999999873 445777777654
Q ss_pred EEEeCEEEEeecccC
Q 010421 142 RYGFEFLVVCTGKYG 156 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~ 156 (511)
++.+|.||.|.|.+|
T Consensus 140 ~~~ad~vIgADG~~S 154 (386)
T PRK07236 140 RETADLLVGADGGRS 154 (386)
T ss_pred EEEeCEEEECCCCCc
Confidence 789999999999886
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-08 Score=99.17 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=79.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc----Cc---------------------cccCC------CcCce
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI----GG---------------------IWKSC------SYNST 49 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~----GG---------------------~w~~~------~~~~~ 49 (511)
+.+||+|||||++|+++|..| .|++|+|+|+.+.. ++ .|..- .+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 457999999999999999999 89999999997521 11 11100 00000
Q ss_pred ec-cCCCCccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 50 KL-QSHRSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 50 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
.. ........+...............+..+.+.|.+.++.. ++ .++++++|++++.. ++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~----------------~~~ 145 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNV--TLRCPASLQALQRD----------------DDG 145 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCc--EEEcCCeeEEEEEc----------------CCe
Confidence 00 000000111100000000011234566777777666655 66 68889999998862 445
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
|.|++.++. ++.+|.||.|+|..|
T Consensus 146 ~~v~~~~g~-----~~~a~~vI~AdG~~S 169 (391)
T PRK08020 146 WELTLADGE-----EIQAKLVIGADGANS 169 (391)
T ss_pred EEEEECCCC-----EEEeCEEEEeCCCCc
Confidence 777776553 789999999999875
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.5e-08 Score=97.05 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=79.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc---Ccc---ccCC--------CcCceecc--CCCCccc-cC--
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI---GGI---WKSC--------SYNSTKLQ--SHRSDYE-FT-- 61 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~---GG~---w~~~--------~~~~~~~~--~~~~~~~-~~-- 61 (511)
+.+||+||||||+|+++|..| .|++|+|+|+.+.+ ++. +... ..+.+.-. .+...+. +.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 567999999999999999999 99999999998764 111 1100 00000000 0000000 00
Q ss_pred ----CCCCCCCC-CC--CCCChHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEE
Q 010421 62 ----DFPWPNRD-DP--GFPSYTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAV 132 (511)
Q Consensus 62 ----~~~~~~~~-~~--~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~ 132 (511)
.++++... .. ....+.++.+.|.+.++. -++ .++++++|++++... ++ .+.|++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~---------------~~~~~~v~~ 146 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDA---------------DGTVTSVTL 146 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECC---------------CCcEEEEEe
Confidence 01111100 01 113456677776666543 345 799999999998731 23 345666
Q ss_pred EeCCCCceeEEEeCEEEEeecccC
Q 010421 133 QTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 133 ~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++. ++.+|.||.|.|.+|
T Consensus 147 ~~g~-----~~~~~~vIgADG~~S 165 (388)
T PRK07045 147 SDGE-----RVAPTVLVGADGARS 165 (388)
T ss_pred CCCC-----EEECCEEEECCCCCh
Confidence 5543 789999999999886
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.8e-08 Score=97.97 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=83.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-CCc---C--ccccCC--------------------CcCceeccCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-DSI---G--GIWKSC--------------------SYNSTKLQSHR 55 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~~~---G--G~w~~~--------------------~~~~~~~~~~~ 55 (511)
.+||+|||||++|+++|..| .|++|+|+|+. ..+ | .....+ .+....+....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 57999999999999999999 99999999997 221 1 000000 00001111111
Q ss_pred -CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEE
Q 010421 56 -SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQ 133 (511)
Q Consensus 56 -~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (511)
....|.................++.+-|.+.+...+ + .++++++|+.++.. ++..++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~----------------~~~v~v~l~ 143 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQD----------------GDGVTVTLS 143 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEc----------------CCceEEEEc
Confidence 112222222221111233467788888888887765 6 78999999999983 344567777
Q ss_pred -eCCCCceeEEEeCEEEEeecccC
Q 010421 134 -THNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 134 -~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++. ++.||.||-|.|.+|
T Consensus 144 ~dG~-----~~~a~llVgADG~~S 162 (387)
T COG0654 144 FDGE-----TLDADLLVGADGANS 162 (387)
T ss_pred CCCc-----EEecCEEEECCCCch
Confidence 443 899999999999886
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9e-08 Score=97.05 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC--c--Ccc--------ccC--------CCcCceec--cCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS--I--GGI--------WKS--------CSYNSTKL--QSHRS 56 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~--~--GG~--------w~~--------~~~~~~~~--~~~~~ 56 (511)
|+ .+||+|||||++|+++|..| .|++|+|||+.+. . .|. +.. ..++.+.- ..+..
T Consensus 1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 64 47999999999999999999 8999999998641 1 110 100 01111110 00100
Q ss_pred cc----------ccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCC
Q 010421 57 DY----------EFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGH 125 (511)
Q Consensus 57 ~~----------~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 125 (511)
.+ .|...............+..+..-|.+.++.. ++ .++++++|++++.. +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i--~i~~~~~v~~~~~~----------------~ 141 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNL--TLMCPEKLADLEFS----------------A 141 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCe--EEECCCceeEEEEc----------------C
Confidence 00 01100000000001122334444444444443 45 78899999999873 3
Q ss_pred CceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 126 PVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 126 ~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++|+++++. ++.+|.||.|+|.+|
T Consensus 142 ~~~~v~~~~g~-----~~~~~lvIgADG~~S 167 (384)
T PRK08849 142 EGNRVTLESGA-----EIEAKWVIGADGANS 167 (384)
T ss_pred CeEEEEECCCC-----EEEeeEEEEecCCCc
Confidence 44677776654 899999999999875
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=96.91 Aligned_cols=137 Identities=12% Similarity=0.168 Sum_probs=81.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC----cCccccCCC--------------cCceeccCCCCc-cccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS----IGGIWKSCS--------------YNSTKLQSHRSD-YEFT 61 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~----~GG~w~~~~--------------~~~~~~~~~~~~-~~~~ 61 (511)
+.+||+||||||+|+++|..| .|++|+|+|+... .||...... ..++++..|... ..+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 358999999999999999999 8999999998753 233111100 111111111111 1111
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC----C
Q 010421 62 DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN----S 137 (511)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~ 137 (511)
.. ......-....+..+.++|.+.+.+.|. .++.+ ++++++...+ .++.+.|++.+.. +
T Consensus 118 ~~-~~~~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~~-~v~~i~~~~~-------------~~~~~~v~~~~~~~~~~~ 180 (450)
T PLN00093 118 KT-LKPHEYIGMVRREVLDSFLRERAQSNGA--TLING-LFTRIDVPKD-------------PNGPYVIHYTSYDSGSGA 180 (450)
T ss_pred cc-CCCCCeEEEecHHHHHHHHHHHHHHCCC--EEEec-eEEEEEeccC-------------CCCcEEEEEEeccccccC
Confidence 00 0000000125788899999999988887 66544 5777764211 1355677765421 1
Q ss_pred CceeEEEeCEEEEeecccC
Q 010421 138 NSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~ 156 (511)
++..++.+|.||.|+|..|
T Consensus 181 g~~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 181 GTPKTLEVDAVIGADGANS 199 (450)
T ss_pred CCccEEEeCEEEEcCCcch
Confidence 2234789999999999875
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.9e-08 Score=97.91 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=76.0
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--c---CCCcEEEcCCCCc-----C------ccccC--------CCcCceec-cCCCC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--R---HHNPVVFEASDSI-----G------GIWKS--------CSYNSTKL-QSHRS 56 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~---g~~v~v~e~~~~~-----G------G~w~~--------~~~~~~~~-~~~~~ 56 (511)
++.+||+|||||++|+++|..| . |++|+|+|+.... + +.+.. ..++.+.- ..+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 1458999999999999999999 5 9999999995211 1 01100 00111000 00000
Q ss_pred ccc-----------cCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCC
Q 010421 57 DYE-----------FTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124 (511)
Q Consensus 57 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 124 (511)
.+. +...............+..+.+.|.+.+... +. .++++++|+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~---------------- 142 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERT---------------- 142 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEc----------------
Confidence 000 0000000000011133455666666655443 45 78889999999862
Q ss_pred CCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 125 ~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.|.|++.++. .+.+|.||.|+|..|
T Consensus 143 ~~~~~v~~~~g~-----~~~a~~vI~AdG~~S 169 (395)
T PRK05732 143 QGSVRVTLDDGE-----TLTGRLLVAADGSHS 169 (395)
T ss_pred CCeEEEEECCCC-----EEEeCEEEEecCCCh
Confidence 456777776553 789999999999874
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-08 Score=98.37 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=78.2
Q ss_pred eEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCc--------cc-cCC---------CcCcee-ccCCCCccccCC-
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGG--------IW-KSC---------SYNSTK-LQSHRSDYEFTD- 62 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG--------~w-~~~---------~~~~~~-~~~~~~~~~~~~- 62 (511)
||+||||||+|+++|..| .| ++|+|+|+.+...- .. ..+ .++.+. ...+.....+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 799999999999999999 89 99999999764311 00 000 000000 000000111100
Q ss_pred -----CCCC--CC---CCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 63 -----FPWP--NR---DDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 63 -----~~~~--~~---~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
..++ +. .......+.++.+.|.+.+... ++ .++++++|+++... ++.++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~----------------~~~~~v~ 142 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRN----------------QDYVRVT 142 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEc----------------CCeEEEE
Confidence 0000 00 0011245677777777777763 66 78889999999873 4457777
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++. ++.+|.||.|.|..|
T Consensus 143 ~~~g~-----~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 143 LDNGQ-----QLRAKLLIAADGANS 162 (382)
T ss_pred ECCCC-----EEEeeEEEEecCCCh
Confidence 65543 789999999999875
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=98.32 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=79.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccCCCcCceecc------CCCCccccCCC-CCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKSCSYNSTKLQ------SHRSDYEFTDF-PWPNRDDP 71 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~ 71 (511)
.+||+||||||+|+++|..| .|++|+|+|+..... |.|.. ....+.+. .+.....+.+. +.......
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~-~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWED-EFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchh-HHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 47999999999999999999 899999999864432 45543 11111110 00000011110 00000011
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE-EEEeCCCCceeEEEeCEEEE
Q 010421 72 GFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV-AVQTHNSNSIQRYGFEFLVV 150 (511)
Q Consensus 72 ~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~d~vVl 150 (511)
....+..+.+.|.+.+.+.++ .+ ++++|+.+... ++.+.+ ...++. ++.++.||+
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~----------------~~~~~vv~~~dG~-----~i~A~lVI~ 242 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGV--SY-LSSKVDRITEA----------------SDGLRLVACEDGR-----VIPCRLATV 242 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEc----------------CCcEEEEEEcCCc-----EEECCEEEE
Confidence 125678888888888877776 44 78899998863 333443 333333 789999999
Q ss_pred eecccC
Q 010421 151 CTGKYG 156 (511)
Q Consensus 151 AtG~~~ 156 (511)
|+|..|
T Consensus 243 AdG~~S 248 (529)
T PLN02697 243 ASGAAS 248 (529)
T ss_pred CCCcCh
Confidence 999874
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-07 Score=93.94 Aligned_cols=131 Identities=16% Similarity=0.179 Sum_probs=77.7
Q ss_pred CeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCc---------CccccCCC---c-------CceeccCCC----Ccccc
Q 010421 5 SKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSI---------GGIWKSCS---Y-------NSTKLQSHR----SDYEF 60 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~---------GG~w~~~~---~-------~~~~~~~~~----~~~~~ 60 (511)
+||+||||||+|+++|..| ..++|+|+|+.+.. |+....+. . +......+. ....+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 7999999999999999999 33999999998743 22111100 0 000000000 00001
Q ss_pred CC-CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCc
Q 010421 61 TD-FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS 139 (511)
Q Consensus 61 ~~-~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (511)
.+ .............+.++.+.|.+.+ ..++ .++++++|++++.. ++.|.|++... +.
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~----------------~~~~~v~~~~~--g~ 140 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWRE----------------DDGYHVIFRAD--GW 140 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEc----------------CCEEEEEEecC--Cc
Confidence 10 0000000011256777877777643 3455 78899999999873 45577776432 22
Q ss_pred eeEEEeCEEEEeecccC
Q 010421 140 IQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~ 156 (511)
..++.+|.||.|+|..|
T Consensus 141 ~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 141 EQHITARYLVGADGANS 157 (351)
T ss_pred EEEEEeCEEEECCCCCc
Confidence 23689999999999875
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=95.77 Aligned_cols=126 Identities=14% Similarity=0.204 Sum_probs=78.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-------Cc----------------cccC-----CCcCceeccCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-------GG----------------IWKS-----CSYNSTKLQSH 54 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-------GG----------------~w~~-----~~~~~~~~~~~ 54 (511)
+||+|||||++|+++|..| .|++|+|+|+.+.. +. .|.. ..+..+.+..+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 6899999999999999999 89999999986321 11 1110 00111111111
Q ss_pred CC--ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 55 RS--DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 55 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
.. ...+... .... ......+.++.+.|.+.+...+ + .++++++|+++... ++.++|+
T Consensus 82 ~g~~~~~~~~~-~~~~-~g~~v~r~~L~~~L~~~~~~~~~v--~~~~~~~v~~i~~~----------------~~~v~v~ 141 (374)
T PRK06617 82 KASEILDLRND-ADAV-LGYVVKNSDFKKILLSKITNNPLI--TLIDNNQYQEVISH----------------NDYSIIK 141 (374)
T ss_pred CCceEEEecCC-CCCC-cEEEEEHHHHHHHHHHHHhcCCCc--EEECCCeEEEEEEc----------------CCeEEEE
Confidence 10 1111110 0000 0122467888888887777765 4 67889999999873 3456676
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++ ++.+|.||.|.|.+|
T Consensus 142 ~~~~------~~~adlvIgADG~~S 160 (374)
T PRK06617 142 FDDK------QIKCNLLIICDGANS 160 (374)
T ss_pred EcCC------EEeeCEEEEeCCCCc
Confidence 6432 789999999999886
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.3e-08 Score=85.67 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=79.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc-cccC-CCcCceeccCCCCccc-cCCCCCCCCCCCCC-CChHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG-IWKS-CSYNSTKLQSHRSDYE-FTDFPWPNRDDPGF-PSYTE 78 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG-~w~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 78 (511)
.||+|+|||||||+||++| .|++|+|||++-.+|| .|.. ..++.+.+..|....- --..|+.+.....+ ....+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 5999999999999999999 9999999999988875 5654 2445555544433221 01122222111111 23455
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC---ceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP---VWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+..-+..-+-..+. .|.-.+.|+++.-.++.. -.| .|+.....+---....+++++||-||||-
T Consensus 111 ~~skl~~~a~~aGa--ki~n~~~veDvi~r~~~r-----------VaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 111 FASKLAARALDAGA--KIFNGVSVEDVIVRDDPR-----------VAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHhcCc--eeeecceEEEEEEecCCc-----------eEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 55555544445565 677777888877632100 000 13222111100011268899999999985
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=95.91 Aligned_cols=123 Identities=23% Similarity=0.302 Sum_probs=80.2
Q ss_pred EEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceecc----------------CCCCc----cccC----
Q 010421 8 AIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQ----------------SHRSD----YEFT---- 61 (511)
Q Consensus 8 ~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~----------------~~~~~----~~~~---- 61 (511)
+|||||++|++||..| .|.+|+|+|+++.+|+.+.... +-+|+ .+... ..|.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG--~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISG--GGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccC--CceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 6999999999999999 8899999999998887543211 00010 00000 0000
Q ss_pred -------CCCCCC-CCCCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 62 -------DFPWPN-RDDPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 62 -------~~~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
..++.. .....|+ ...++.+.+...+++.++ .++++++|++++.. ++.|.|
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~----------------~~~~~v 140 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKD----------------DNGFGV 140 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEec----------------CCeEEE
Confidence 000100 0012232 357788888888888888 89999999999762 445666
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccC
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.+ ++. ++.+|.||+|+|..+
T Consensus 141 ~~-~~~-----~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 141 ET-SGG-----EYEADKVILATGGLS 160 (400)
T ss_pred EE-CCc-----EEEcCEEEECCCCcc
Confidence 65 222 689999999999873
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-08 Score=97.47 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEee
Q 010421 74 PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
.....+.+.+.+.+++.|. .++.+++|+++... ++.|+ |.+.++ .+.+|+||+|+
T Consensus 144 i~~~~l~~~l~~~~~~~Gv--~i~~~~~V~~i~~~----------------~~~v~gv~~~~g------~i~ad~vV~a~ 199 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGV--EIRTGTEVTSIDVD----------------GGRVTGVRTSDG------EIRADRVVLAA 199 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT---EEEESEEEEEEEEE----------------TTEEEEEEETTE------EEEECEEEE--
T ss_pred ccccchhhhhHHHHHHhhh--hccccccccchhhc----------------cccccccccccc------ccccceeEecc
Confidence 3467888888888888898 89999999999984 55676 776655 69999999999
Q ss_pred cccC
Q 010421 153 GKYG 156 (511)
Q Consensus 153 G~~~ 156 (511)
|..+
T Consensus 200 G~~s 203 (358)
T PF01266_consen 200 GAWS 203 (358)
T ss_dssp GGGH
T ss_pred cccc
Confidence 9863
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=97.15 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=75.1
Q ss_pred eEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCccc-----cCC---------CcCce---e--ccCCCCc--cccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGGIW-----KSC---------SYNST---K--LQSHRSD--YEFT 61 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG~w-----~~~---------~~~~~---~--~~~~~~~--~~~~ 61 (511)
+|+|||||++||++|..| .| ++|+||||.+.++..- ..+ ..+.+ . ...+... +.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 799999999999999999 56 6999999987764211 000 00000 0 0000000 0000
Q ss_pred C--------CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEE
Q 010421 62 D--------FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQ 133 (511)
Q Consensus 62 ~--------~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (511)
+ .............+.++.+.|...+.. . .++++++|++++.. ++.|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~v~~~~~v~~i~~~----------------~~~~~v~~~ 141 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--G--IASFGKRATQIEEQ----------------AEEVQVLFT 141 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--c--eEEcCCEEEEEEec----------------CCcEEEEEc
Confidence 0 000000001123455666666554422 2 47899999999873 445888887
Q ss_pred eCCCCceeEEEeCEEEEeecccC
Q 010421 134 THNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 134 ~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++. ++.+|.||.|.|.+|
T Consensus 142 ~g~-----~~~ad~vVgADG~~S 159 (414)
T TIGR03219 142 DGT-----EYRCDLLIGADGIKS 159 (414)
T ss_pred CCC-----EEEeeEEEECCCccH
Confidence 664 789999999999885
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-07 Score=93.99 Aligned_cols=135 Identities=18% Similarity=0.138 Sum_probs=80.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccC--C---------CcCcee-ccCCCCccccCC-----
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKS--C---------SYNSTK-LQSHRSDYEFTD----- 62 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~--~---------~~~~~~-~~~~~~~~~~~~----- 62 (511)
+||+|||||++|+++|..| .|++|+|||+.+.+. ..... + .++.+. ...+...+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 3899999999999999999 899999999987542 11100 0 000000 000101111100
Q ss_pred ---CCCCCC----CCCCCCChHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe
Q 010421 63 ---FPWPNR----DDPGFPSYTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT 134 (511)
Q Consensus 63 ---~~~~~~----~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 134 (511)
.+.... .+.....+.++.+.|.+.+.+ .+. ..++++++|++++.. ++...+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~----------------~~~~~~~~~~ 143 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQD----------------ADVTVVFLGD 143 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEec----------------CCceEEEEec
Confidence 011000 001124577777777665543 442 259999999999863 2234566665
Q ss_pred CCCCceeEEEeCEEEEeecccC
Q 010421 135 HNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 135 ~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.+++..++.+|.||.|.|.+|
T Consensus 144 ~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 144 RAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred cCCCccceEEeeEEEECCCCCH
Confidence 5444455899999999999986
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=71.19 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=57.4
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYL 83 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (511)
+|+|||||+.|+.+|..| .+.+|+++++++.+. ..-.+++..++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~----------------------------------~~~~~~~~~~~ 46 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL----------------------------------PGFDPDAAKIL 46 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS----------------------------------TTSSHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh----------------------------------hhcCHHHHHHH
Confidence 589999999999999999 899999999987652 11245778888
Q ss_pred HHHHHhcCCCCceEeeeEEEEEEEc
Q 010421 84 ESYAKHFDVFKCVRFNSKVVEVRFT 108 (511)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~V~~v~~~ 108 (511)
.+..++.++ .++++++|.+++..
T Consensus 47 ~~~l~~~gV--~v~~~~~v~~i~~~ 69 (80)
T PF00070_consen 47 EEYLRKRGV--EVHTNTKVKEIEKD 69 (80)
T ss_dssp HHHHHHTTE--EEEESEEEEEEEEE
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEe
Confidence 888888899 99999999999983
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-07 Score=94.23 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=75.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc------C-ccccCC---------CcCcee-ccCCCCcccc----
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI------G-GIWKSC---------SYNSTK-LQSHRSDYEF---- 60 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~------G-G~w~~~---------~~~~~~-~~~~~~~~~~---- 60 (511)
.+||+||||||+|+++|..| .|++|+|+|+.+.. + +....+ ..+.+. ...+...+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 47999999999999999999 99999999998641 1 110000 000000 0001011111
Q ss_pred --CCCCCCCCCCC---CCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC
Q 010421 61 --TDFPWPNRDDP---GFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH 135 (511)
Q Consensus 61 --~~~~~~~~~~~---~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (511)
..++++..... ......++.+.|.+.+...+. .++++++|++++... ...-.|++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv--~v~~~~~v~~i~~~~---------------~~~~~V~~~~- 143 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGG--PIRFEASDVALHDFD---------------SDRPYVTYEK- 143 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCC--eEEEeeeEEEEEecC---------------CCceEEEEEc-
Confidence 01111111000 111234555555555555666 799999999987521 2223455532
Q ss_pred CCCceeEEEeCEEEEeecccC
Q 010421 136 NSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++..++.+|.||.|.|.+|
T Consensus 144 -~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 144 -DGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred -CCeEEEEEeCEEEECCCCCC
Confidence 23344789999999999986
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=93.84 Aligned_cols=132 Identities=15% Similarity=0.206 Sum_probs=80.0
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC---ccccC--C---------CcCcee-ccCCCCccccCC-----
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG---GIWKS--C---------SYNSTK-LQSHRSDYEFTD----- 62 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G---G~w~~--~---------~~~~~~-~~~~~~~~~~~~----- 62 (511)
.+|+|||||++|+++|..| .|++|+|+|+.+.+. ..... + .++.+. ...+...+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 7899999999999999999 899999999987542 11110 0 000000 000001111111
Q ss_pred ----CCC---CCC-CCCC--CCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 63 ----FPW---PNR-DDPG--FPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 63 ----~~~---~~~-~~~~--~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
..+ ... .... ...+.++.+-|.+.+... ++ .++++++|++++.. ++.++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~----------------~~~v~v~ 144 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQT----------------GNSITAT 144 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecC----------------CCceEEE
Confidence 000 000 0011 135677777777666543 45 68999999999862 4456777
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++++++ ++.+|.||.|.|.+|
T Consensus 145 ~~~~~~~~--~~~adlvIgADG~~S 167 (400)
T PRK06475 145 IIRTNSVE--TVSAAYLIACDGVWS 167 (400)
T ss_pred EEeCCCCc--EEecCEEEECCCccH
Confidence 76543222 689999999999986
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-08 Score=73.28 Aligned_cols=50 Identities=36% Similarity=0.483 Sum_probs=41.0
Q ss_pred EECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCcc
Q 010421 9 IIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDY 58 (511)
Q Consensus 9 IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~ 58 (511)
|||||++||++|..| .+.+|+|+|+++.+||.+....+++...+.....+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~ 52 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYF 52 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEE
Confidence 899999999999999 88999999999999999988666776665544433
|
... |
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.4e-07 Score=95.12 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=34.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
|+..+||+|||||+.|+++|..| .|++|+|+|+++..+|
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 45568999999999999999999 9999999999765444
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-07 Score=91.19 Aligned_cols=136 Identities=16% Similarity=0.253 Sum_probs=75.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCcCc-cccCCC-cCceeccCCCC-ccccCCCCCCCCCCCCCC---
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSIGG-IWKSCS-YNSTKLQSHRS-DYEFTDFPWPNRDDPGFP--- 74 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~GG-~w~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 74 (511)
.+||+|||||++|+.+|..| . +++|+|+|++..+|| .|.... +....+..+.. .+.--..++... ..|.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~--dgy~vv~ 169 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ--ENYVVIK 169 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC--CCeeEec
Confidence 47999999999999999999 3 799999999988876 554311 11111111111 011112233211 1111
Q ss_pred ChHHHHHHHHHHH-HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC---ceEEEEEeCCCC---ceeEEEeCE
Q 010421 75 SYTEILDYLESYA-KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP---VWEVAVQTHNSN---SIQRYGFEF 147 (511)
Q Consensus 75 ~~~~~~~yl~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~---~~~~~~~d~ 147 (511)
...++...|...+ ++.++ .+..++.|+++...++.- .| .|.+...++..+ +...+.+++
T Consensus 170 ha~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~grV------------aGVVvnw~~v~~~~~~~s~~dp~~I~Aka 235 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGDRV------------GGVVTNWALVAQNHDTQSCMDPNVMEAKV 235 (357)
T ss_pred chHHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecCCEE------------EEEEeecchhhhccCCCCccceeEEECCE
Confidence 2234444454433 34566 788888888887631000 01 032222222211 223689999
Q ss_pred EEEeeccc
Q 010421 148 LVVCTGKY 155 (511)
Q Consensus 148 vVlAtG~~ 155 (511)
||+|||+.
T Consensus 236 VVlATGh~ 243 (357)
T PLN02661 236 VVSSCGHD 243 (357)
T ss_pred EEEcCCCC
Confidence 99999975
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.61 E-value=3e-07 Score=94.75 Aligned_cols=135 Identities=13% Similarity=0.163 Sum_probs=78.9
Q ss_pred CeEEEECCCHHHHHHHHhc-c-----CCCcEEEcCCCCcC----------ccccC----------------CCcCce---
Q 010421 5 SKIAIIGAGVSGLAAVKQL-R-----HHNPVVFEASDSIG----------GIWKS----------------CSYNST--- 49 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~-----g~~v~v~e~~~~~G----------G~w~~----------------~~~~~~--- 49 (511)
+||+|||||++|+++|..| . |++|+|+|+++... |.+.. ..++.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 5899999999999999999 5 89999999943211 10000 001111
Q ss_pred --------eccCCC--CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC---CCCceEeeeEEEEEEEcCCCCcccC
Q 010421 50 --------KLQSHR--SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFD---VFKCVRFNSKVVEVRFTGSLETTDS 116 (511)
Q Consensus 50 --------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~v~~~~~~~~~~~ 116 (511)
...... ....|+..+.... .........+.+.|.+.+.+.+ + .++++++|++++.....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~L~~~~~~~~~~~v--~i~~~~~v~~i~~~~~~~---- 153 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKED-MACIIENDNIQNSLYNRLQEYNGDNV--KILNPARLISVTIPSKYP---- 153 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCc-eEEEEEHHHHHHHHHHHHHhCCCCCe--EEecCCeeEEEEeccccc----
Confidence 100000 0111211110000 0112356777788877776664 5 789999999998521000
Q ss_pred CCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 117 GGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 117 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
. +.....+|++.+++ ++.+|.||.|.|.+|
T Consensus 154 ----~-~~~~~v~v~~~~g~-----~i~a~llVgADG~~S 183 (437)
T TIGR01989 154 ----N-DNSNWVHITLSDGQ-----VLYTKLLIGADGSNS 183 (437)
T ss_pred ----c-CCCCceEEEEcCCC-----EEEeeEEEEecCCCC
Confidence 0 01334567666554 899999999999986
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=94.53 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=80.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC----CCcEEEcCCCCcC---------------------ccccCCCcC--ceeccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH----HNPVVFEASDSIG---------------------GIWKSCSYN--STKLQS 53 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g----~~v~v~e~~~~~G---------------------G~w~~~~~~--~~~~~~ 53 (511)
+.+||+||||||+|+++|..| .| ++|+|+|+.+... |.|.....+ ......
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 457999999999999999999 54 5799999965321 111110011 111110
Q ss_pred CC--C--ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 54 HR--S--DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 54 ~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
.. . .+.+.++..+. ........++.+.|.+.+...++ .+.++++|++++.. ...++
T Consensus 90 ~~~~g~~~~~~~~~~~~~--~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~----------------~~~v~ 149 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPA--LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQD----------------ADGVT 149 (398)
T ss_pred CCCCceEEecccccCCCc--CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeec----------------CCeEE
Confidence 00 0 01111111110 01124567888888888887776 78899999998762 44577
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecc
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+++.+++++ .++.+|.||.|.|.
T Consensus 150 v~~~~~~g~--~~i~a~lvIgADG~ 172 (398)
T PRK06996 150 LALGTPQGA--RTLRARIAVQAEGG 172 (398)
T ss_pred EEECCCCcc--eEEeeeEEEECCCC
Confidence 776654322 37999999999995
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-07 Score=91.57 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=74.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc------C-ccccCC---------CcCcee-ccCCCCccccC---
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI------G-GIWKSC---------SYNSTK-LQSHRSDYEFT--- 61 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~------G-G~w~~~---------~~~~~~-~~~~~~~~~~~--- 61 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+.. + +....+ ..+.+. ...+...+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 47999999999999999999 99999999998741 1 110000 000000 00011111110
Q ss_pred ---CCCCCCCCC-CC--CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC
Q 010421 62 ---DFPWPNRDD-PG--FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH 135 (511)
Q Consensus 62 ---~~~~~~~~~-~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (511)
..+++.... .. ......+..-|.+.+...+. .++++++++.+.... .....|++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~~~~~~~~v~~~~~~---------------~~~~~V~~~~~ 144 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGL--TTVYDADDVRLHDLA---------------GDRPYVTFERD 144 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCC--eEEEeeeeEEEEecC---------------CCccEEEEEEC
Confidence 011111100 00 11234455555555555666 788998887775421 22345666521
Q ss_pred CCCceeEEEeCEEEEeecccC
Q 010421 136 NSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++..++++|.||-|.|.+|
T Consensus 145 --g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 145 --GERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred --CeEEEEEeCEEEECCCCch
Confidence 2234689999999999986
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-07 Score=94.24 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
..+...+...+.+.|. .+..+++|+++... ++.|.|.+.++. ++..++.++.||.|+|.++
T Consensus 155 ~rl~~~l~~~a~~~Ga--~i~~~~~V~~i~~~----------------~~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGA--TILTRTRCVSARRE----------------GGLWRVETRDAD-GETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCC--EEecCcEEEEEEEc----------------CCEEEEEEEeCC-CCEEEEEecEEEECCCccH
Confidence 3344445555677787 88899999999872 456888877765 5556799999999999863
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.3e-07 Score=89.86 Aligned_cols=127 Identities=12% Similarity=0.097 Sum_probs=73.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc---cccC--C-------------------CcCceeccCCCCcc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG---IWKS--C-------------------SYNSTKLQSHRSDY 58 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG---~w~~--~-------------------~~~~~~~~~~~~~~ 58 (511)
+||+|||||++|+++|..| .|++|+|+|+.+.+.. .... + ...+.....+...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~- 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN- 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC-
Confidence 5899999999999999999 8999999999876431 1000 0 0111111111100
Q ss_pred ccCCCCCCCCCCCC------CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEE
Q 010421 59 EFTDFPWPNRDDPG------FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAV 132 (511)
Q Consensus 59 ~~~~~~~~~~~~~~------~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (511)
.+...+........ -..+.++.+-+...+ ..+. .++|+++|++++.. ++..+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v--~i~~~~~v~~i~~~----------------~~~v~v~~ 141 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSV--EYLFDDSISTLQDD----------------GDSVRVTF 141 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCc--EEEeCCEEEEEEec----------------CCeEEEEE
Confidence 00000000000000 112344444443322 2344 78999999999862 44566777
Q ss_pred EeCCCCceeEEEeCEEEEeecccC
Q 010421 133 QTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 133 ~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++. ++.+|.||-|.|.+|
T Consensus 142 ~dg~-----~~~adlvIgADG~~S 160 (372)
T PRK05868 142 ERAA-----AREFDLVIGADGLHS 160 (372)
T ss_pred CCCC-----eEEeCEEEECCCCCc
Confidence 6664 789999999999886
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.1e-07 Score=92.96 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=34.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC--cCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS--IGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~--~GG 39 (511)
|...+||+|||+|++|++||.++ .|.+|+|+||.+. .||
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG 43 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG 43 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc
Confidence 66788999999999999999999 8999999999864 455
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=94.36 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=84.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCcC--c----cccC----------------CCc--CceeccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSIG--G----IWKS----------------CSY--NSTKLQS 53 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~G--G----~w~~----------------~~~--~~~~~~~ 53 (511)
|...+||+||||||+||++|..| . |++|+|+|+.+..- | .+.. ..+ .......
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~ 108 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK 108 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence 44567999999999999999999 4 89999999976431 1 1110 000 0000000
Q ss_pred C-----CCccc---cCCCCCCC-CCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCC
Q 010421 54 H-----RSDYE---FTDFPWPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124 (511)
Q Consensus 54 ~-----~~~~~---~~~~~~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 124 (511)
+ ..... +.+.+... .......+...+.+.|.+.+.+.+..-.++++++|++++...+ +
T Consensus 109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~-------------~ 175 (634)
T PRK08294 109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEE-------------G 175 (634)
T ss_pred CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCC-------------C
Confidence 0 00000 01110000 0011223556677888887777653225788999999987311 1
Q ss_pred CCceEEEEEeCC---CCceeEEEeCEEEEeecccC
Q 010421 125 HPVWEVAVQTHN---SNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 125 ~~~~~v~~~~~~---~~~~~~~~~d~vVlAtG~~~ 156 (511)
....+|++++.+ +++..++.+|+||-|.|.+|
T Consensus 176 ~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 176 EYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS 210 (634)
T ss_pred CCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch
Confidence 234677776542 24445899999999999987
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.9e-07 Score=91.45 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+.+||+|||||+.|+++|.+| .|.+|+|+|++...
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 458999999999999999999 89999999997543
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.58 E-value=5e-07 Score=91.51 Aligned_cols=57 Identities=28% Similarity=0.290 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+.+.+.+.++..+. .+..+++|++++.. ++.+.|.+.++ ++.+|+||+|+|.
T Consensus 143 ~p~~~~~~l~~~~~~~g~--~~~~~~~V~~i~~~----------------~~~~~v~~~~~------~i~a~~vV~aaG~ 198 (380)
T TIGR01377 143 YAEKALRALQELAEAHGA--TVRDGTKVVEIEPT----------------ELLVTVKTTKG------SYQANKLVVTAGA 198 (380)
T ss_pred cHHHHHHHHHHHHHHcCC--EEECCCeEEEEEec----------------CCeEEEEeCCC------EEEeCEEEEecCc
Confidence 345566667777777787 78889999999872 44566655432 6899999999997
Q ss_pred c
Q 010421 155 Y 155 (511)
Q Consensus 155 ~ 155 (511)
.
T Consensus 199 ~ 199 (380)
T TIGR01377 199 W 199 (380)
T ss_pred c
Confidence 6
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.7e-07 Score=92.84 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC-CcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD-SIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~-~~GG 39 (511)
|...+||+|||||+||+.||..+ .|.+|+++|++. .+|+
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 44679999999999999999999 899999999973 5654
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.3e-08 Score=85.89 Aligned_cols=135 Identities=21% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc-cccC-CCcCceeccCCCCccc-cCCCCCCCCCCCCC-CChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG-IWKS-CSYNSTKLQSHRSDYE-FTDFPWPNRDDPGF-PSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG-~w~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~ 77 (511)
.+||+||||||+||+||+.| .|++|+|||++..+|| .|.. ..++...++.|...+- --..++.+.....| ....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 47999999999999999999 8999999999998886 5654 2455555555433221 01122221111112 3556
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEe------CCCCceeEEEeCEEEE
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQT------HNSNSIQRYGFEFLVV 150 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~------~~~~~~~~~~~d~vVl 150 (511)
++...|..-+-+-+. .+.-.+.|+++--.. +++.. |.++- +---....++++.||-
T Consensus 97 ~~~s~L~s~a~~aGa--kifn~~~vEDvi~r~---------------~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViD 159 (230)
T PF01946_consen 97 EFTSTLASKAIDAGA--KIFNLTSVEDVIVRE---------------DDRVAGVVINWTPVEMAGLHVDPLTIRAKVVID 159 (230)
T ss_dssp HHHHHHHHHHHTTTE--EEEETEEEEEEEEEC---------------SCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE
T ss_pred HHHHHHHHHHhcCCC--EEEeeeeeeeeEEEc---------------CCeEEEEEEEehHHhHhhcCCCcceEEEeEEEe
Confidence 666666555555665 566667888877631 11111 11110 0000123789999999
Q ss_pred eeccc
Q 010421 151 CTGKY 155 (511)
Q Consensus 151 AtG~~ 155 (511)
||||-
T Consensus 160 aTGHd 164 (230)
T PF01946_consen 160 ATGHD 164 (230)
T ss_dssp ---SS
T ss_pred CCCCc
Confidence 99985
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.7e-07 Score=91.47 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~G 38 (511)
.+||+|||||++|+++|.+| . |.+|+|+|+...+|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 37999999999999999999 5 89999999986554
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.5e-08 Score=100.31 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=33.3
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCC---cCceecc------C----CCCccccCCCCCCC---
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCS---YNSTKLQ------S----HRSDYEFTDFPWPN--- 67 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~---~~~~~~~------~----~~~~~~~~~~~~~~--- 67 (511)
||||||||++|++||..+ .|.+|+|+|+.+.+||...... ..+.... . ...+......+.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 899999999999999999 9999999999999999766521 1111100 0 00000000001110
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 68 RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
+........+.+...+.+.+.+.++ .+.+++.|.++...+ +..+.|.+.+.. + ..++.++.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~---------------~~i~~V~~~~~~-g-~~~i~A~~ 141 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDG---------------GRITGVIVETKS-G-RKEIRAKV 141 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccc---------------cccccccccccc-c-cccccccc
Confidence 1001123444555667777777788 899999999998731 334556666543 2 34899999
Q ss_pred EEEeeccc
Q 010421 148 LVVCTGKY 155 (511)
Q Consensus 148 vVlAtG~~ 155 (511)
+|-|||--
T Consensus 142 ~IDaTG~g 149 (428)
T PF12831_consen 142 FIDATGDG 149 (428)
T ss_dssp --------
T ss_pred cccccccc
Confidence 99999953
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-06 Score=88.79 Aligned_cols=132 Identities=23% Similarity=0.210 Sum_probs=81.5
Q ss_pred eEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCccccC--------CC----cCce-----------------ecc-
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGGIWKS--------CS----YNST-----------------KLQ- 52 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG~w~~--------~~----~~~~-----------------~~~- 52 (511)
||+|||+|.+|++||.++ .| .+|+|+||.+..||.-.. +. ..+. ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 799999999999999999 88 999999998877654221 00 0000 000
Q ss_pred --------CCCC---ccccCCCCCCC-------C--CC------CCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEE
Q 010421 53 --------SHRS---DYEFTDFPWPN-------R--DD------PGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVR 106 (511)
Q Consensus 53 --------~~~~---~~~~~~~~~~~-------~--~~------~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~ 106 (511)
.... .+. ...++.. . .. .....+.++.+.+...+++.++ .++++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv--~i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI--DTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC--EEEeCCEeeEeE
Confidence 0000 000 0111100 0 00 0113456788888888988888 899999999998
Q ss_pred EcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 107 FTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
... ++ .+-|.+.+.+ ++...+.+|.||+|||.++
T Consensus 158 ~~~---------------~g~v~Gv~~~~~~-g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 158 QDD---------------QGTVVGVVVKGKG-KGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred ECC---------------CCcEEEEEEEeCC-CeEEEEecceEEEecCCCC
Confidence 721 22 2334454432 3334578999999999874
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-06 Score=89.38 Aligned_cols=101 Identities=23% Similarity=0.210 Sum_probs=75.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ...++..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 215 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL--------------------------------PG--EDAEVSK 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--------------------------------CC--CCHHHHH
Confidence 46899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++...+...++ ...++.+|.||+|+| ..|+.
T Consensus 216 ~~~~~l~~~gi--~i~~~~~v~~i~~~----------------~~~v~v~~~~g---~~~~i~~D~vi~a~G---~~p~~ 271 (461)
T TIGR01350 216 VVAKALKKKGV--KILTNTKVTAVEKN----------------DDQVVYENKGG---ETETLTGEKVLVAVG---RKPNT 271 (461)
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEEe----------------CCEEEEEEeCC---cEEEEEeCEEEEecC---CcccC
Confidence 77777788888 89999999999862 33344444333 223689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 272 ~ 272 (461)
T TIGR01350 272 E 272 (461)
T ss_pred C
Confidence 5
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.9e-07 Score=89.69 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=79.3
Q ss_pred eEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc--cccCC--CcCc---------eeccCCCCccccCCCCCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG--IWKSC--SYNS---------TKLQSHRSDYEFTDFPWPNR 68 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG--~w~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~ 68 (511)
||+|||||+||+++|..| . |++|+|+|+.+.+|| +|..- .... +....+.....+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999 4 899999999988877 44331 0000 00000111111111100000
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEE
Q 010421 69 DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFL 148 (511)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 148 (511)
.........++.+++.. +.+. .+.++++|++++. + . |++.++. ++.+|.|
T Consensus 81 ~~Y~~I~r~~f~~~l~~---~l~~--~i~~~~~V~~v~~-----------------~-~--v~l~dg~-----~~~A~~V 130 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQ---AFPE--GVILGRKAVGLDA-----------------D-G--VDLAPGT-----RINARSV 130 (370)
T ss_pred CCceEEEHHHHHHHHHH---hhcc--cEEecCEEEEEeC-----------------C-E--EEECCCC-----EEEeeEE
Confidence 01222345666666643 3333 3777889998843 2 1 5555554 7999999
Q ss_pred EEeecccCCCCCCCCCCCCCCCCcccceEEe
Q 010421 149 VVCTGKYGDVPIIPAFPNNKGPEVFEGQVLH 179 (511)
Q Consensus 149 VlAtG~~~~~p~~p~~~~~~g~~~~~g~~~h 179 (511)
|.|.|..+ . .+... +...|.|-.+.
T Consensus 131 I~A~G~~s-~--~~~~~---~~Q~f~G~~~r 155 (370)
T TIGR01789 131 IDCRGFKP-S--AHLKG---GFQVFLGREMR 155 (370)
T ss_pred EECCCCCC-C--ccccc---eeeEEEEEEEE
Confidence 99999753 1 11113 55666665444
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=87.90 Aligned_cols=103 Identities=22% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
+++++|||||+.|+..|..+ .|.+|+|+|+.+.+- +. ..+++.+
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL--------------------------------p~--~D~ei~~ 218 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL--------------------------------PG--EDPEISK 218 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------------Cc--CCHHHHH
Confidence 46899999999999999999 999999999987651 11 2468889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++....++.++ .++++++|+.++.. ++...++++++.++ ++.+|.|++|+| ..|++
T Consensus 219 ~~~~~l~~~gv--~i~~~~~v~~~~~~----------------~~~v~v~~~~g~~~---~~~ad~vLvAiG---R~Pn~ 274 (454)
T COG1249 219 ELTKQLEKGGV--KILLNTKVTAVEKK----------------DDGVLVTLEDGEGG---TIEADAVLVAIG---RKPNT 274 (454)
T ss_pred HHHHHHHhCCe--EEEccceEEEEEec----------------CCeEEEEEecCCCC---EEEeeEEEEccC---CccCC
Confidence 99888888667 78999999999873 22256777666422 688999999999 67888
Q ss_pred CCC
Q 010421 162 PAF 164 (511)
Q Consensus 162 p~~ 164 (511)
.++
T Consensus 275 ~~L 277 (454)
T COG1249 275 DGL 277 (454)
T ss_pred CCC
Confidence 754
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-06 Score=82.31 Aligned_cols=150 Identities=22% Similarity=0.287 Sum_probs=109.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||.-||..+.-. .|.+||++|-.+++|+... .|+..
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD----------------------------------~Eisk 256 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD----------------------------------GEISK 256 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC----------------------------------HHHHH
Confidence 36899999999999988877 8999999999998876422 36677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
-+++...+-++ .+.++++|..+.+. +++...|++++..+++.++++||.+.+|+| ..|.+
T Consensus 257 ~~qr~L~kQgi--kF~l~tkv~~a~~~---------------~dg~v~i~ve~ak~~k~~tle~DvlLVsiG---RrP~t 316 (506)
T KOG1335|consen 257 AFQRVLQKQGI--KFKLGTKVTSATRN---------------GDGPVEIEVENAKTGKKETLECDVLLVSIG---RRPFT 316 (506)
T ss_pred HHHHHHHhcCc--eeEeccEEEEeecc---------------CCCceEEEEEecCCCceeEEEeeEEEEEcc---Ccccc
Confidence 77777888888 88999999999983 366788999998888888999999999999 67776
Q ss_pred CCC--CCCCCCC-cccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHH
Q 010421 162 PAF--PNNKGPE-VFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAE 218 (511)
Q Consensus 162 p~~--~~~~g~~-~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~ 218 (511)
-++ ... |++ ++.|++.--.+|.. +--+|-.||--.-|-=+|.....
T Consensus 317 ~GLgle~i-Gi~~D~r~rv~v~~~f~t----------~vP~i~~IGDv~~gpMLAhkAee 365 (506)
T KOG1335|consen 317 EGLGLEKI-GIELDKRGRVIVNTRFQT----------KVPHIYAIGDVTLGPMLAHKAEE 365 (506)
T ss_pred cCCChhhc-ccccccccceeccccccc----------cCCceEEecccCCcchhhhhhhh
Confidence 543 111 222 34455554444433 22468888876666555544433
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.4e-06 Score=87.94 Aligned_cols=104 Identities=24% Similarity=0.255 Sum_probs=74.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+++|+.+.+. +. ...++.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il--------------------------------~~--~~~~~~~ 225 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL--------------------------------PT--EDAELSK 225 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC--------------------------------Cc--CCHHHHH
Confidence 46899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++...+ ++...+...+ ++..++.+|.||+|+| ..|+.
T Consensus 226 ~l~~~l~~~gI--~i~~~~~v~~i~~~~~--------------~~~~~~~~~~---g~~~~i~~D~vi~a~G---~~p~~ 283 (472)
T PRK05976 226 EVARLLKKLGV--RVVTGAKVLGLTLKKD--------------GGVLIVAEHN---GEEKTLEADKVLVSVG---RRPNT 283 (472)
T ss_pred HHHHHHHhcCC--EEEeCcEEEEEEEecC--------------CCEEEEEEeC---CceEEEEeCEEEEeeC---CccCC
Confidence 77777788888 8999999999975100 2211222222 2233689999999999 45666
Q ss_pred CC
Q 010421 162 PA 163 (511)
Q Consensus 162 p~ 163 (511)
+.
T Consensus 284 ~~ 285 (472)
T PRK05976 284 EG 285 (472)
T ss_pred CC
Confidence 43
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.6e-07 Score=87.51 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=42.5
Q ss_pred CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 91 DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 91 ~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+. .++++++|+++++. .++.|.|.+.+..+++..++.+++|+|+.|..+
T Consensus 196 ~~--~~~~~~eV~~i~r~---------------~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 196 GF--ELHLNHEVTDIKRN---------------GDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred Cc--EEEecCEeCeeEEC---------------CCCCEEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 66 89999999999994 278899999887777777999999999999874
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=87.82 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+||+|||||..|+++|.+| .|.+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 5999999999999999999 78999999998644
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-06 Score=88.12 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=33.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
.+||||||+|.+|++||..+ .|.+|+|+||....||.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN 99 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence 57999999999999999999 89999999999888763
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=86.77 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG 39 (511)
+.+||+|||||+.|+++|..| . +++|+|+||.+.+|.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 468999999999999999999 4 499999999998873
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-06 Score=85.92 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=76.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ..+++.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 217 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL--------------------------------PG--EDKEISK 217 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--------------------------------Cc--CCHHHHH
Confidence 36899999999999999999 889999999976541 11 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+++..++.++ .++++++|++++.. ++.+.+.+.++ +...++.+|.||+|+| ..|+.
T Consensus 218 ~l~~~l~~~gV--~i~~~~~V~~i~~~----------------~~~v~v~~~~g--g~~~~i~~D~vi~a~G---~~p~~ 274 (462)
T PRK06416 218 LAERALKKRGI--KIKTGAKAKKVEQT----------------DDGVTVTLEDG--GKEETLEADYVLVAVG---RRPNT 274 (462)
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEEe----------------CCEEEEEEEeC--CeeEEEEeCEEEEeeC---CccCC
Confidence 77777888888 89999999999872 33455555544 2233789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 275 ~ 275 (462)
T PRK06416 275 E 275 (462)
T ss_pred C
Confidence 4
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-06 Score=87.46 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=35.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
|+..+||+|||+|.|||+||.++ .|.+|+|+||.+..||
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg 40 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC 40 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC
Confidence 66678999999999999999999 9999999999887665
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-06 Score=87.91 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
.+..+...+.+.+++.++ .++++++|+++... +++ --|...+..+++...+.++.||+|||
T Consensus 139 ~g~~~~~~l~~~~~~~gv--~i~~~~~~~~Li~e----------------~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtG 200 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGV--DIRFNTRVTDLITE----------------DGRVTGVVAENPADGEFVRIKAKAVILATG 200 (417)
T ss_dssp HHHHHHHHHHHHHHHTTE--EEEESEEEEEEEEE----------------TTEEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred cHHHHHHHHHHHHhhcCe--eeeccceeeeEEEe----------------CCceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence 567788888999999997 89999999999983 222 22445544556667899999999999
Q ss_pred ccC
Q 010421 154 KYG 156 (511)
Q Consensus 154 ~~~ 156 (511)
.+.
T Consensus 201 G~~ 203 (417)
T PF00890_consen 201 GFG 203 (417)
T ss_dssp -BG
T ss_pred ccc
Confidence 773
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-06 Score=85.54 Aligned_cols=96 Identities=11% Similarity=0.172 Sum_probs=73.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.+.. .. ..+++..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~--~~~~~~~ 187 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SL--MPPEVSS 187 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hh--CCHHHHH
Confidence 46899999999999999999 7899999999765410 00 1234566
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+..++.++ .+.++++|.+++.. .+.+.|.+.++. ++.+|.||+|+|..
T Consensus 188 ~l~~~l~~~gV--~i~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~i~~D~vI~a~G~~ 238 (377)
T PRK04965 188 RLQHRLTEMGV--HLLLKSQLQGLEKT----------------DSGIRATLDSGR-----SIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHHhCCC--EEEECCeEEEEEcc----------------CCEEEEEEcCCc-----EEECCEEEECcCCC
Confidence 77777788888 88999999999862 345667766554 79999999999953
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-06 Score=87.23 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~G 38 (511)
.+||+|||||++|+++|..| .+.+|+|+||.+.+|
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 47999999999999999999 479999999955555
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-06 Score=90.37 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.+||+|||||+.|+++|..| .|++|+|+|+++-
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 58999999999999999999 8999999999653
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-07 Score=70.72 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=31.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
||+|||+|.+|+|+|..|+..+.+ ||++.|++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~-----vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE-----VTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-----EEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE-----EEEEeccchhh
Confidence 699999999999999999998754 99999998744
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-06 Score=80.01 Aligned_cols=141 Identities=23% Similarity=0.340 Sum_probs=92.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC--cc---------------------------ccCC-CcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG--GI---------------------------WKSC-SYNS 48 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G--G~---------------------------w~~~-~~~~ 48 (511)
|.+..+|+|||||.-|+++|.+| .|.++.++|+-+-+- |. |+.+ ...+
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 45678999999999999999999 889999999855321 11 1110 0000
Q ss_pred eec---------cCC------------------------CCc-cccC-CCCCCCCC------CCCCCChHHHHHHHHHHH
Q 010421 49 TKL---------QSH------------------------RSD-YEFT-DFPWPNRD------DPGFPSYTEILDYLESYA 87 (511)
Q Consensus 49 ~~~---------~~~------------------------~~~-~~~~-~~~~~~~~------~~~~~~~~~~~~yl~~~~ 87 (511)
..+ ..+ ... -.|+ ..++|+.+ ...+.....-..-++.++
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 000 000 000 0233 45566543 345567778888899999
Q ss_pred HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCC
Q 010421 88 KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP 162 (511)
Q Consensus 88 ~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p 162 (511)
++.|. -++.+.+|..+...++ + ...-.|.++++. .+.++++|+++|.+ -...+|
T Consensus 164 ~~~G~--i~~dg~~v~~~~~~~e-~------------~~~v~V~Tt~gs-----~Y~akkiI~t~GaW-i~klL~ 217 (399)
T KOG2820|consen 164 RELGV--IFRDGEKVKFIKFVDE-E------------GNHVSVQTTDGS-----IYHAKKIIFTVGAW-INKLLP 217 (399)
T ss_pred HHcCe--EEecCcceeeEeeccC-C------------CceeEEEeccCC-----eeecceEEEEecHH-HHhhcC
Confidence 99998 7899999999887521 1 333456666664 69999999999987 344444
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.2e-06 Score=85.31 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=76.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ..+++..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 211 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL--------------------------------PR--EEPEISA 211 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--------------------------------Cc--cCHHHHH
Confidence 36899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|.+++.. ++...+++...++ ..++.+|.||+|+| ..|+.
T Consensus 212 ~l~~~l~~~gV--~i~~~~~V~~i~~~----------------~~~~~v~~~~~~~--~~~i~~D~ViiA~G---~~p~~ 268 (463)
T TIGR02053 212 AVEEALAEEGI--EVVTSAQVKAVSVR----------------GGGKIITVEKPGG--QGEVEADELLVATG---RRPNT 268 (463)
T ss_pred HHHHHHHHcCC--EEEcCcEEEEEEEc----------------CCEEEEEEEeCCC--ceEEEeCEEEEeEC---CCcCC
Confidence 77777888888 89999999999862 2334555543221 23789999999999 45666
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 269 ~ 269 (463)
T TIGR02053 269 D 269 (463)
T ss_pred C
Confidence 5
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.5e-06 Score=83.94 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.+||+|||+|.+|+++|..| .|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 48999999999999999999 899999999863
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-05 Score=84.20 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=76.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+. +.+ ..++..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~~~--d~~~~~ 217 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL--------------------------------PNE--DAEVSK 217 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------Ccc--CHHHHH
Confidence 36899999999999999999 889999999875441 111 245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++...+.+... ++...++.+|.||+|+| ..|+.
T Consensus 218 ~l~~~l~~~gV--~i~~~~~v~~i~~~----------------~~~~~v~~~~~-~g~~~~i~~D~vi~a~G---~~pn~ 275 (466)
T PRK07818 218 EIAKQYKKLGV--KILTGTKVESIDDN----------------GSKVTVTVSKK-DGKAQELEADKVLQAIG---FAPRV 275 (466)
T ss_pred HHHHHHHHCCC--EEEECCEEEEEEEe----------------CCeEEEEEEec-CCCeEEEEeCEEEECcC---cccCC
Confidence 77777888888 89999999999862 23345555421 22233789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 276 ~ 276 (466)
T PRK07818 276 E 276 (466)
T ss_pred C
Confidence 4
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-06 Score=85.65 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
+||+|||||++|+++|.+| .|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999 8999999999653
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=88.74 Aligned_cols=61 Identities=13% Similarity=0.284 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHh----cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEE
Q 010421 75 SYTEILDYLESYAKH----FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVV 150 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~----~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVl 150 (511)
....+...+.+.+++ .|..-.++++++|++++.. +++.|.|.+.++ ++.+|+||+
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~---------------~~~~~~V~T~~G------~i~A~~VVv 267 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS---------------NDSLYKIHTNRG------EIRARFVVV 267 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec---------------CCCeEEEEECCC------EEEeCEEEE
Confidence 334555555566666 5521268899999999873 145677776544 789999999
Q ss_pred eecccC
Q 010421 151 CTGKYG 156 (511)
Q Consensus 151 AtG~~~ 156 (511)
|+|.++
T Consensus 268 aAG~~S 273 (497)
T PTZ00383 268 SACGYS 273 (497)
T ss_pred CcChhH
Confidence 999874
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.5e-07 Score=93.61 Aligned_cols=43 Identities=42% Similarity=0.621 Sum_probs=40.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|++.+||+|||||++||+||..| .|++|+|+|+++.+||.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 77889999999999999999999 79999999999999998765
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-05 Score=83.72 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=76.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.+. +. ...++..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 228 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL--------------------------------AA--ADEQVAK 228 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC--------------------------------Cc--CCHHHHH
Confidence 46899999999999999998 889999999976541 11 1245666
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++...+.+.+++ ++..++.+|.||+|+| ..|+.
T Consensus 229 ~~~~~l~~~gi--~i~~~~~v~~i~~~----------------~~~v~v~~~~~~-g~~~~i~~D~vl~a~G---~~p~~ 286 (475)
T PRK06327 229 EAAKAFTKQGL--DIHLGVKIGEIKTG----------------GKGVSVAYTDAD-GEAQTLEVDKLIVSIG---RVPNT 286 (475)
T ss_pred HHHHHHHHcCc--EEEeCcEEEEEEEc----------------CCEEEEEEEeCC-CceeEEEcCEEEEccC---CccCC
Confidence 77777777788 89999999999862 233445555432 3334789999999999 46776
Q ss_pred CC
Q 010421 162 PA 163 (511)
Q Consensus 162 p~ 163 (511)
+.
T Consensus 287 ~~ 288 (475)
T PRK06327 287 DG 288 (475)
T ss_pred CC
Confidence 53
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.8e-06 Score=84.29 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 216 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL--------------------------------PR--EDEDVAA 216 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC--------------------------------cc--cCHHHHH
Confidence 36899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++....++.++ .++++++|.+++.. ++...|.+....++ .++.+|.||+|+| ..|+.
T Consensus 217 ~l~~~l~~~GV--~i~~~~~V~~i~~~----------------~~~~~v~~~~~~~~--~~i~~D~Vi~A~G---~~pn~ 273 (463)
T PRK06370 217 AVREILEREGI--DVRLNAECIRVERD----------------GDGIAVGLDCNGGA--PEITGSHILVAVG---RVPNT 273 (463)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEc----------------CCEEEEEEEeCCCc--eEEEeCEEEECcC---CCcCC
Confidence 77778888888 89999999999862 22334554432211 2689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 274 ~ 274 (463)
T PRK06370 274 D 274 (463)
T ss_pred C
Confidence 4
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=86.42 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=74.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+.+. . ..+++..
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~--~~~~~~~ 190 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-------------------------------N--APPPVQR 190 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh-------------------------------h--cCHHHHH
Confidence 46899999999999999999 88999999997654210 0 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++....++.++ .++++++|++++. ++...+.+.++. ++.+|.||+|+|. .|+.
T Consensus 191 ~l~~~l~~~GV--~i~~~~~V~~i~~-----------------~~~~~v~l~~g~-----~i~aD~Vv~a~G~---~pn~ 243 (396)
T PRK09754 191 YLLQRHQQAGV--RILLNNAIEHVVD-----------------GEKVELTLQSGE-----TLQADVVIYGIGI---SAND 243 (396)
T ss_pred HHHHHHHHCCC--EEEeCCeeEEEEc-----------------CCEEEEEECCCC-----EEECCEEEECCCC---Chhh
Confidence 77777888888 8999999999875 223445555543 7899999999994 4553
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=84.10 Aligned_cols=40 Identities=48% Similarity=0.722 Sum_probs=34.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCcccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGGIWK 42 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG~w~ 42 (511)
...+|||||||.|||+||.+| .| .+++|+|..+++||.-+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 346899999999999999999 44 58999999999999544
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.8e-06 Score=83.99 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=76.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. .. ...++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 212 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL--------------------------------RG--FDPDIRE 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999875431 11 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++... ++.+.+.+.++. ++.+|.||+|+| ..|+.
T Consensus 213 ~l~~~L~~~GV--~i~~~~~V~~i~~~~---------------~g~~~v~~~~g~-----~i~~D~Vv~a~G---~~p~~ 267 (450)
T PRK06116 213 TLVEEMEKKGI--RLHTNAVPKAVEKNA---------------DGSLTLTLEDGE-----TLTVDCLIWAIG---REPNT 267 (450)
T ss_pred HHHHHHHHCCc--EEECCCEEEEEEEcC---------------CceEEEEEcCCc-----EEEeCEEEEeeC---CCcCC
Confidence 77778888888 899999999998621 333556655543 789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 268 ~ 268 (450)
T PRK06116 268 D 268 (450)
T ss_pred C
Confidence 5
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=91.32 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+||+|||||++|+++|.+| .|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 5999999999999999999 89999999997644
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=83.06 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll--------------------------------~~--~d~e~~~ 215 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL--------------------------------PG--EDEDIAH 215 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------cc--ccHHHHH
Confidence 36899999999999999998 789999999976541 11 1356777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. +.. +.+... +...++.||.||+|+| ..|+.
T Consensus 216 ~l~~~L~~~GI--~i~~~~~V~~i~~~----------------~~~--v~~~~~--g~~~~i~~D~vivA~G---~~p~~ 270 (458)
T PRK06912 216 ILREKLENDGV--KIFTGAALKGLNSY----------------KKQ--ALFEYE--GSIQEVNAEFVLVSVG---RKPRV 270 (458)
T ss_pred HHHHHHHHCCC--EEEECCEEEEEEEc----------------CCE--EEEEEC--CceEEEEeCEEEEecC---CccCC
Confidence 77877888888 89999999999862 222 333332 2223689999999999 46665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 271 ~ 271 (458)
T PRK06912 271 Q 271 (458)
T ss_pred C
Confidence 4
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.4e-06 Score=86.05 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
...+...+.+.+++.|. .++++++|++++.. +++.|.+++.+..++...++.+|+||+|+|..
T Consensus 177 p~~l~~aL~~~a~~~Gv--~i~~~t~V~~i~~~---------------~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGT--TIRFGHEVRNLKRQ---------------SDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEc---------------CCCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence 34455555555666677 89999999999872 14568887654333333368999999999987
Q ss_pred C
Q 010421 156 G 156 (511)
Q Consensus 156 ~ 156 (511)
+
T Consensus 240 s 240 (483)
T TIGR01320 240 A 240 (483)
T ss_pred h
Confidence 4
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.9e-06 Score=84.57 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=35.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
..+||+|||||+.|+.+|..+ .|++|+++|+++-..|+-.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 568999999999999999999 9999999999887766543
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.8e-06 Score=84.40 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=73.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ..+++.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 202 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL--------------------------------PR--EEPSVAA 202 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC--------------------------------CC--CCHHHHH
Confidence 46899999999999999999 889999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++...+. .++. ++.+|.||+|+| ..|+.
T Consensus 203 ~~~~~l~~~GI--~i~~~~~V~~i~~~----------------~~~v~v~-~~g~-----~i~~D~viva~G---~~p~~ 255 (438)
T PRK07251 203 LAKQYMEEDGI--TFLLNAHTTEVKND----------------GDQVLVV-TEDE-----TYRFDALLYATG---RKPNT 255 (438)
T ss_pred HHHHHHHHcCC--EEEcCCEEEEEEec----------------CCEEEEE-ECCe-----EEEcCEEEEeeC---CCCCc
Confidence 77777888888 89999999999862 2223332 2222 789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 256 ~ 256 (438)
T PRK07251 256 E 256 (438)
T ss_pred c
Confidence 4
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.1e-06 Score=84.48 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=76.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..+ .|.+|+++|+.+.+. +. ...++..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il--------------------------------~~--~d~~~~~ 219 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC--------------------------------PG--TDTETAK 219 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC--------------------------------CC--CCHHHHH
Confidence 47899999999999999998 899999999976541 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|++++.. ++...+.+.+..++....+.+|.||+|+| ..|+.
T Consensus 220 ~l~~~l~~~gV--~i~~~~~V~~i~~~----------------~~~v~v~~~~~~~g~~~~i~~D~vi~a~G---~~pn~ 278 (466)
T PRK06115 220 TLQKALTKQGM--KFKLGSKVTGATAG----------------ADGVSLTLEPAAGGAAETLQADYVLVAIG---RRPYT 278 (466)
T ss_pred HHHHHHHhcCC--EEEECcEEEEEEEc----------------CCeEEEEEEEcCCCceeEEEeCEEEEccC---Ccccc
Confidence 77777788888 89999999999862 23345555432222234789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 279 ~ 279 (466)
T PRK06115 279 Q 279 (466)
T ss_pred c
Confidence 4
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=85.47 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=68.6
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEE-cCCCCcCccccCCCcCceeccC----------CCCcc---------ccCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVF-EASDSIGGIWKSCSYNSTKLQS----------HRSDY---------EFTDF 63 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~-e~~~~~GG~w~~~~~~~~~~~~----------~~~~~---------~~~~~ 63 (511)
||+|||||.||+.||..+ .|.+|+++ ++.+.+|..-.. |++...- -...| +|...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cn---psigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCN---PSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS---SEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccch---hhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 799999999999999999 99999999 555555532211 1111110 00000 00000
Q ss_pred ----CCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCC
Q 010421 64 ----PWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSN 138 (511)
Q Consensus 64 ----~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 138 (511)
..+.+....-..+..+..++++.++.. ++ . .+..+|+++...+ +..+-|.+.++.
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl--~-i~~~~V~~l~~e~---------------~~v~GV~~~~g~-- 137 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNL--T-IIQGEVTDLIVEN---------------GKVKGVVTKDGE-- 137 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTE--E-EEES-EEEEEECT---------------TEEEEEEETTSE--
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCe--E-EEEcccceEEecC---------------CeEEEEEeCCCC--
Confidence 000010112346788888888888774 34 3 3578999998731 222335554443
Q ss_pred ceeEEEeCEEEEeeccc
Q 010421 139 SIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 139 ~~~~~~~d~vVlAtG~~ 155 (511)
.+.+|.||+|||.+
T Consensus 138 ---~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 138 ---EIEADAVVLATGTF 151 (392)
T ss_dssp ---EEEECEEEE-TTTG
T ss_pred ---EEecCEEEEecccc
Confidence 78999999999964
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.9e-06 Score=82.14 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=91.5
Q ss_pred CeEEEECCCHHHHHHHHhc----c-----------CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL----R-----------HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRD 69 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~-----------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (511)
-+|+|||||+.|+..|-+| . .++|+|+|+.+.+.
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 3799999999999999998 1 14899999987651
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEE
Q 010421 70 DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLV 149 (511)
Q Consensus 70 ~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 149 (511)
+.| .+++..|.+++.++.|+ .+++++.|++|+.. .|++.+++. ++.++.+|
T Consensus 205 -p~~--~~~l~~~a~~~L~~~GV--~v~l~~~Vt~v~~~--------------------~v~~~~g~~----~I~~~tvv 255 (405)
T COG1252 205 -PMF--PPKLSKYAERALEKLGV--EVLLGTPVTEVTPD--------------------GVTLKDGEE----EIPADTVV 255 (405)
T ss_pred -cCC--CHHHHHHHHHHHHHCCC--EEEcCCceEEECCC--------------------cEEEccCCe----eEecCEEE
Confidence 222 35778899999999999 99999999999972 277777651 59999999
Q ss_pred EeecccCCCCCCCCCCCCCCCC-cccceEEeccccCccchhhhhhccCCCcEEEECCCC
Q 010421 150 VCTGKYGDVPIIPAFPNNKGPE-VFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKK 207 (511)
Q Consensus 150 lAtG~~~~~p~~p~~~~~~g~~-~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~ 207 (511)
.|+|.. ..|-.-.+. |.+ .-.|+++-...... .....|-++|-..
T Consensus 256 WaaGv~-a~~~~~~l~---~~e~dr~Grl~V~~~L~~---------~~~~~IFa~GD~A 301 (405)
T COG1252 256 WAAGVR-ASPLLKDLS---GLETDRRGRLVVNPTLQV---------PGHPDIFAAGDCA 301 (405)
T ss_pred EcCCCc-CChhhhhcC---hhhhccCCCEEeCCCccc---------CCCCCeEEEeccc
Confidence 999976 334333321 222 22355554443332 2345688888543
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-05 Score=83.27 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=75.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ...++.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 220 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL--------------------------------SF--LDDEISD 220 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------Cc--CCHHHHH
Confidence 46899999999999999999 899999999976541 11 1345677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .+.++++|++++.. ++.+.+++.++. ++.+|.||+|+| ..|+.
T Consensus 221 ~l~~~l~~~gI--~v~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~i~~D~vi~a~G---~~p~~ 274 (461)
T PRK05249 221 ALSYHLRDSGV--TIRHNEEVEKVEGG----------------DDGVIVHLKSGK-----KIKADCLLYANG---RTGNT 274 (461)
T ss_pred HHHHHHHHcCC--EEEECCEEEEEEEe----------------CCeEEEEECCCC-----EEEeCEEEEeec---CCccc
Confidence 77777778888 88999999999862 334556554443 789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 275 ~ 275 (461)
T PRK05249 275 D 275 (461)
T ss_pred c
Confidence 4
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=87.70 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=29.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~ 35 (511)
..||+|||||++|+++|.+| . |.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 46999999999999999999 4 89999999964
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.5e-06 Score=86.93 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
...||+|||+|.||++||..+ .|.+|+|+||....+|
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 357999999999999999999 8899999999765544
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=86.36 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
|....||+|||+|.||++||..+ .+.+|+|+||....+|
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~~~g 41 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRS 41 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 33457999999999999999999 5589999999765443
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.2e-06 Score=84.82 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 78 EILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 78 ~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.+.+.+.+.+++.+ + .+.++++|++++.. +++.|.|++.+..++...++.+++||+|+|..+
T Consensus 184 ~l~~aL~~~a~~~Ggv--~i~~~teV~~I~~~---------------~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 184 ALTRQLVGYLQKQGNF--ELQLGHEVRDIKRN---------------DDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHhCCCe--EEEeCCEEEEEEEC---------------CCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 44455555566655 5 78999999999873 155688887653223223589999999999874
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=86.14 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
.+||+|||||.|||+||..+ .|.+|+|+|+...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 46999999999999999999 799999999866654
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=86.76 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..+||+|||||+.|+++|..| .|++|+|+|+++-.+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 348999999999999999999 9999999999754434
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.5e-06 Score=85.73 Aligned_cols=39 Identities=36% Similarity=0.445 Sum_probs=34.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--c----CCCcEEEcCCCCcCcccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R----HHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~----g~~v~v~e~~~~~GG~w~ 42 (511)
.++++|||||.|||+||..| . |.+|+|+|+++.+||...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 47899999999999999999 2 689999999999999654
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=82.37 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|++|+.+|..| .|.+|+++++.+.+.. .. ...++..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-------------------------------~~--~~~~~~~ 183 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-------------------------------KL--FDEEMNQ 183 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------cc--cCHHHHH
Confidence 36899999999999999999 7889999998754310 11 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .+.++++|.+++. ++.. +.+.+++ ++.||.||+|+|. .|+.
T Consensus 184 ~~~~~l~~~gV--~v~~~~~v~~i~~-----------------~~~~-v~~~~g~-----~i~~D~vi~a~G~---~p~~ 235 (427)
T TIGR03385 184 IVEEELKKHEI--NLRLNEEVDSIEG-----------------EERV-KVFTSGG-----VYQADMVILATGI---KPNS 235 (427)
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEec-----------------CCCE-EEEcCCC-----EEEeCEEEECCCc---cCCH
Confidence 78888888888 8999999999975 2222 3444443 7899999999994 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
+
T Consensus 236 ~ 236 (427)
T TIGR03385 236 E 236 (427)
T ss_pred H
Confidence 3
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.1e-06 Score=86.75 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+..+|+|||||++||++|..| .|++|+|||+..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 457899999999999999999 999999999965
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-05 Score=80.39 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=75.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. ..+ .+++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il--------------------------------~~~--d~~~~~ 211 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL--------------------------------RSF--DSMISE 211 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------------ccc--CHHHHH
Confidence 36899999999999999999 889999999976541 111 345667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++... ++...+.+.++. ..+.+|.||+|+| ..|+.
T Consensus 212 ~~~~~l~~~gI--~i~~~~~v~~i~~~~---------------~~~~~v~~~~g~----~~i~~D~vi~a~G---~~pn~ 267 (450)
T TIGR01421 212 TITEEYEKEGI--NVHKLSKPVKVEKTV---------------EGKLVIHFEDGK----SIDDVDELIWAIG---RKPNT 267 (450)
T ss_pred HHHHHHHHcCC--EEEcCCEEEEEEEeC---------------CceEEEEECCCc----EEEEcCEEEEeeC---CCcCc
Confidence 77777778888 899999999998621 232345554431 2689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 268 ~ 268 (450)
T TIGR01421 268 K 268 (450)
T ss_pred c
Confidence 4
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-05 Score=83.86 Aligned_cols=65 Identities=9% Similarity=-0.013 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++..+...|.+.+.+.++ .+..++.++++.... +++ .-|.+.+..+++...+.++.||+|||
T Consensus 146 tG~~l~~~L~~~~~~~gi--~i~~~~~~~~Li~~~---------------~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 208 (591)
T PRK07057 146 TGHALLHTLYQQNVAAKT--QFFVEWMALDLIRDA---------------DGDVLGVTALEMETGDVYILEAKTTLFATG 208 (591)
T ss_pred ChHHHHHHHHHHHHhcCC--EEEeCcEEEEEEEcC---------------CCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence 456777778777777787 888999999887621 222 22333333345555788999999999
Q ss_pred ccC
Q 010421 154 KYG 156 (511)
Q Consensus 154 ~~~ 156 (511)
.++
T Consensus 209 G~~ 211 (591)
T PRK07057 209 GAG 211 (591)
T ss_pred Ccc
Confidence 873
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=82.79 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=74.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..+ .|.+|+++++.+.+. +. ..+++.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 211 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL--------------------------------RG--FDDDMRA 211 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999865431 11 1246667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++...+.+.++. ++.+|.||+|+| ..|+.
T Consensus 212 ~l~~~l~~~gV--~i~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~i~~D~viva~G---~~pn~ 265 (446)
T TIGR01424 212 LLARNMEGRGI--RIHPQTSLTSITKT----------------DDGLKVTLSHGE-----EIVADVVLFATG---RSPNT 265 (446)
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEc----------------CCeEEEEEcCCc-----EeecCEEEEeeC---CCcCC
Confidence 77777888888 89999999999862 223455554443 789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 266 ~ 266 (446)
T TIGR01424 266 K 266 (446)
T ss_pred C
Confidence 3
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-05 Score=81.14 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll--------------------------------~~--~d~~~~~ 211 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL--------------------------------RH--LDDDISE 211 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999976541 11 1234555
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+....+ .++ .++++++|++++.. ++...+.+.++. ++.+|.||+|+| ..|+.
T Consensus 212 ~l~~l~~-~~v--~i~~~~~v~~i~~~----------------~~~v~v~~~~g~-----~i~~D~vl~a~G---~~pn~ 264 (451)
T PRK07846 212 RFTELAS-KRW--DVRLGRNVVGVSQD----------------GSGVTLRLDDGS-----TVEADVLLVATG---RVPNG 264 (451)
T ss_pred HHHHHHh-cCe--EEEeCCEEEEEEEc----------------CCEEEEEECCCc-----EeecCEEEEEEC---CccCc
Confidence 5555443 456 78899999999862 223345544332 799999999999 45666
Q ss_pred CC
Q 010421 162 PA 163 (511)
Q Consensus 162 p~ 163 (511)
..
T Consensus 265 ~~ 266 (451)
T PRK07846 265 DL 266 (451)
T ss_pred cc
Confidence 54
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=84.80 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=79.5
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCC-cCccccC--CCcCce--eccCCC----------------------
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDS-IGGIWKS--CSYNST--KLQSHR---------------------- 55 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~-~GG~w~~--~~~~~~--~~~~~~---------------------- 55 (511)
..||+|||+|.||++||..+ .|.+|+|+||... .||.-.. ..+... .-+++.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~~ 86 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEAERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEIL 86 (543)
T ss_pred ccCEEEECccHHHHHHHHHHhcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 47999999999999999999 9999999999754 4442111 000000 000000
Q ss_pred --------CccccCCCCCCCCC----------CCCC--------CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcC
Q 010421 56 --------SDYEFTDFPWPNRD----------DPGF--------PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTG 109 (511)
Q Consensus 56 --------~~~~~~~~~~~~~~----------~~~~--------~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~ 109 (511)
..+.--..+|.... ...+ .++.++...|.+.+++.++ .+.++++|+++...+
T Consensus 87 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~t~v~~Li~~~ 164 (543)
T PRK06263 87 VKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERI--KILEEVMAIKLIVDE 164 (543)
T ss_pred HHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCC--EEEeCeEeeeeEEeC
Confidence 00000012221100 0001 1356777888887877777 899999999987621
Q ss_pred CCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 110 SLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 110 ~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++ ..-+...+..+++...+.++.||+|||.+
T Consensus 165 ---------------~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 165 ---------------NREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred ---------------CcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 22 11233333223445578999999999976
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.6e-07 Score=91.09 Aligned_cols=41 Identities=39% Similarity=0.636 Sum_probs=37.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+.++|+|||||+|||+||++| .|++|+|+|.++++||.-+.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEE
Confidence 357999999999999999999 99999999999999996554
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-05 Score=82.71 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.+||+|||||++|+++|..| .|++|+|+|+..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 47999999999999999999 899999999974
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.8e-05 Score=84.43 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=30.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
||+|||+|.||++||..+ .|.+|+|+||....+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999 8899999999765543
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-05 Score=85.15 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~ 37 (511)
.+||+|||+|.|||+||..+ . |.+|+|+||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 36999999999999999999 5 8999999997643
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=84.88 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG 39 (511)
..+||+|||||.||++||.++ . +.+|+|+||....||
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 457999999999999999999 3 489999999765553
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=83.97 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+||+|||||.|||+||..+ .|.+|+|+||....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 6999999999999999999 88999999997543
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.4e-06 Score=86.52 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++..+.+.|...+++.++ .+.+++.|+++.... +++. -+...+..+++...+.++.||+|||
T Consensus 135 ~G~~i~~~L~~~~~~~gv--~i~~~~~v~~Li~~~---------------~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG 197 (554)
T PRK08275 135 EGHDIKKVLYRQLKRARV--LITNRIMATRLLTDA---------------DGRVAGALGFDCRTGEFLVIRAKAVILCCG 197 (554)
T ss_pred ChHHHHHHHHHHHHHCCC--EEEcceEEEEEEEcC---------------CCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence 466788888888888888 899999999997621 2222 1222232234445688999999999
Q ss_pred cc
Q 010421 154 KY 155 (511)
Q Consensus 154 ~~ 155 (511)
.+
T Consensus 198 G~ 199 (554)
T PRK08275 198 AA 199 (554)
T ss_pred Cc
Confidence 76
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.1e-05 Score=71.12 Aligned_cols=34 Identities=15% Similarity=0.366 Sum_probs=28.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~ 36 (511)
+.++|+|||||.+|+.+|..+ ..-+|.|+|..++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 457899999999999999999 3347999998764
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-05 Score=82.23 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEee
Q 010421 75 SYTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
++..+...|.+.+++ .++ .+.++++|+++... ++... |.+.+. +....+.++.||+||
T Consensus 126 ~G~~l~~~L~~~~~~~~gi--~i~~~~~v~~l~~~----------------~g~v~Gv~~~~~--~~~~~i~A~~VVlAt 185 (488)
T TIGR00551 126 TGREVITTLVKKALNHPNI--RIIEGENALDLLIE----------------TGRVVGVWVWNR--ETVETCHADAVVLAT 185 (488)
T ss_pred CHHHHHHHHHHHHHhcCCc--EEEECeEeeeeecc----------------CCEEEEEEEEEC--CcEEEEEcCEEEECC
Confidence 456777888877776 577 88999999998762 23222 444443 223468999999999
Q ss_pred cccC
Q 010421 153 GKYG 156 (511)
Q Consensus 153 G~~~ 156 (511)
|.++
T Consensus 186 GG~~ 189 (488)
T TIGR00551 186 GGAG 189 (488)
T ss_pred Cccc
Confidence 9874
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=81.81 Aligned_cols=99 Identities=28% Similarity=0.320 Sum_probs=73.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+. ...+ .+++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~~--~~~~~~ 195 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------PDSF--DKEITD 195 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------------chhc--CHHHHH
Confidence 46899999999999999999 789999999865431 0111 357788
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+.+++.++ .++++++|++++.. ++.+.+.. ++. ++.||.||+|+|. .|+.
T Consensus 196 ~l~~~l~~~gI--~v~~~~~v~~i~~~----------------~~~~~v~~-~~~-----~i~~d~vi~a~G~---~p~~ 248 (444)
T PRK09564 196 VMEEELRENGV--ELHLNEFVKSLIGE----------------DKVEGVVT-DKG-----EYEADVVIVATGV---KPNT 248 (444)
T ss_pred HHHHHHHHCCC--EEEcCCEEEEEecC----------------CcEEEEEe-CCC-----EEEcCEEEECcCC---CcCH
Confidence 88888888998 89999999999641 22223332 222 6899999999994 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
+
T Consensus 249 ~ 249 (444)
T PRK09564 249 E 249 (444)
T ss_pred H
Confidence 3
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.5e-06 Score=85.38 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=33.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
.+||+|||+|.+|++||.++ .|.+|+|+||....||.
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 47999999999999999999 89999999998877763
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=81.75 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=29.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
||+|||||.+|+++|.+| .|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 899999999999999999 89999999997544
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-05 Score=84.81 Aligned_cols=35 Identities=29% Similarity=0.204 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
.+||+|||+|.|||+||..+ .|.+|+|+||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 46999999999999999999 889999999986554
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-05 Score=82.64 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=75.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+++.+.+- +. ...++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 248 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL--------------------------------RG--FDDEMRA 248 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC--------------------------------cc--cCHHHHH
Confidence 36899999999999999998 889999999875431 11 1356777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|.+++.. ++...+.+.++. ++.+|.|++|+| ..|+.
T Consensus 249 ~l~~~l~~~GI--~i~~~~~V~~i~~~----------------~~~~~v~~~~g~-----~i~~D~vl~a~G---~~pn~ 302 (499)
T PLN02507 249 VVARNLEGRGI--NLHPRTNLTQLTKT----------------EGGIKVITDHGE-----EFVADVVLFATG---RAPNT 302 (499)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEe----------------CCeEEEEECCCc-----EEEcCEEEEeec---CCCCC
Confidence 88888888888 89999999999862 233445443332 699999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 303 ~ 303 (499)
T PLN02507 303 K 303 (499)
T ss_pred C
Confidence 4
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-05 Score=83.66 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++..+...|.+.+.+.++ .+..++.++++.... +++.. |...+..+++.+.+.++.||+|||
T Consensus 164 tG~~i~~~L~~~a~~~gv--~i~~~~~~~~Li~~~---------------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 164 TGHAMLHTLYGQSLKYDC--NFFIEYFALDLIMDE---------------DGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred cHHHHHHHHHHHHHhCCC--EEEeceEEEEEEECC---------------CCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 466788888888888887 889999999977511 23221 333333345566789999999999
Q ss_pred cc
Q 010421 154 KY 155 (511)
Q Consensus 154 ~~ 155 (511)
.+
T Consensus 227 G~ 228 (617)
T PTZ00139 227 GY 228 (617)
T ss_pred CC
Confidence 76
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-05 Score=81.23 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
..+|+|||||+.|+.+|..| .|.+|+++++.+.+.. . ..+++.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~--------------------------------~--~d~~~~~ 193 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK--------------------------------L--MDADMNQ 193 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch--------------------------------h--cCHHHHH
Confidence 36899999999999999999 8899999999765421 1 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++. . .|++.++. .+.+|.||+|+| ..|+.
T Consensus 194 ~l~~~l~~~gI--~i~~~~~v~~i~~-----------------~---~v~~~~g~-----~~~~D~vl~a~G---~~pn~ 243 (438)
T PRK13512 194 PILDELDKREI--PYRLNEEIDAING-----------------N---EVTFKSGK-----VEHYDMIIEGVG---THPNS 243 (438)
T ss_pred HHHHHHHhcCC--EEEECCeEEEEeC-----------------C---EEEECCCC-----EEEeCEEEECcC---CCcCh
Confidence 77777888888 8999999999864 1 36665543 689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 244 ~ 244 (438)
T PRK13512 244 K 244 (438)
T ss_pred H
Confidence 4
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=80.27 Aligned_cols=38 Identities=37% Similarity=0.546 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
|++.+||+|||||++|+++|.+| .|.+|+++|+....+
T Consensus 1 ~~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 56789999999999999999999 888999999976543
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=81.54 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=74.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++++|||+|+.|+.+|..| .|.+|+++++.+.+. +.+ ..++.++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~~--d~~~~~~ 223 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL--------------------------------PGE--DADAAEV 223 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC--------------------------------CCC--CHHHHHH
Confidence 5899999999999999998 889999999976541 111 2456677
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP 162 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p 162 (511)
+....++.++ .+.++++|.+++.. ++...+.+.++. ++.+|.||+|+| ..|+..
T Consensus 224 l~~~L~~~gV--~i~~~~~v~~v~~~----------------~~~~~v~~~~g~-----~l~~D~vl~a~G---~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGM--TVLKRSRAESVERT----------------GDGVVVTLTDGR-----TVEGSHALMAVG---SVPNTA 277 (466)
T ss_pred HHHHHHHCCc--EEEcCCEEEEEEEe----------------CCEEEEEECCCc-----EEEecEEEEeec---CCcCCC
Confidence 8888888888 89999999999762 233455554432 789999999999 456654
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.5e-05 Score=80.78 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=73.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +.+ ..++.+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~~--~~~~~~ 203 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL--------------------------------PRE--DRDIAD 203 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--------------------------------CCc--CHHHHH
Confidence 46899999999999999999 889999999975431 111 245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+.+++.++ .++++++|.+++.. ++.+.+...++ ++.+|.||+|+| ..|+.
T Consensus 204 ~l~~~l~~~gV--~v~~~~~v~~i~~~----------------~~~v~v~~~~g------~i~~D~vl~a~G---~~pn~ 256 (441)
T PRK08010 204 NIATILRDQGV--DIILNAHVERISHH----------------ENQVQVHSEHA------QLAVDALLIASG---RQPAT 256 (441)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEc----------------CCEEEEEEcCC------eEEeCEEEEeec---CCcCC
Confidence 77888888888 89999999999862 23334433222 578999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 257 ~ 257 (441)
T PRK08010 257 A 257 (441)
T ss_pred C
Confidence 3
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.6e-05 Score=81.50 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=72.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc-CCCcC----ce---eccCCCCc---------cccCCCC-
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK-SCSYN----ST---KLQSHRSD---------YEFTDFP- 64 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~-~~~~~----~~---~~~~~~~~---------~~~~~~~- 64 (511)
+||+|||||++|+.+|..+ .|.+|+|+|++...+|... ..... +. .++..... .+|....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 5899999999999999999 7999999998754332211 00000 00 00000000 0011000
Q ss_pred --CCC-CCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 65 --WPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 65 --~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
-|. +....-..+..+...++..+++.+. ...+..+|+.+.... ++....|.+.++.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pg--V~Ile~~Vv~li~e~--------------~g~V~GV~t~~G~----- 139 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPN--LSLFQGEVEDLILED--------------NDEIKGVVTQDGL----- 139 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCC--cEEEEeEEEEEEEec--------------CCcEEEEEECCCC-----
Confidence 000 0011123556677778777777632 233556787776521 0223345555543
Q ss_pred EEEeCEEEEeeccc
Q 010421 142 RYGFEFLVVCTGKY 155 (511)
Q Consensus 142 ~~~~d~vVlAtG~~ 155 (511)
.+.||.||+|||.+
T Consensus 140 ~I~Ad~VILATGtf 153 (617)
T TIGR00136 140 KFRAKAVIITTGTF 153 (617)
T ss_pred EEECCEEEEccCcc
Confidence 79999999999976
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-05 Score=78.93 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=72.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++. .+ ... ..+++.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~--------------------------------l~~--~d~~~~~ 232 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TL--------------------------------LFR--EDPLLGE 232 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CC--------------------------------CCc--chHHHHH
Confidence 36899999999999999999 88999999874 22 011 1345677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++.+.+...++ ++.+|.||+|+| ..|+.
T Consensus 233 ~l~~~L~~~GV--~i~~~~~V~~i~~~----------------~~~~~v~~~~g------~i~aD~VlvA~G---~~pn~ 285 (479)
T PRK14727 233 TLTACFEKEGI--EVLNNTQASLVEHD----------------DNGFVLTTGHG------ELRAEKLLISTG---RHANT 285 (479)
T ss_pred HHHHHHHhCCC--EEEcCcEEEEEEEe----------------CCEEEEEEcCC------eEEeCEEEEccC---CCCCc
Confidence 78888888888 89999999999862 23344443222 688999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 286 ~ 286 (479)
T PRK14727 286 H 286 (479)
T ss_pred c
Confidence 4
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.5e-05 Score=81.23 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=73.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+. +. ..+++.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il--------------------------------~~--~d~~~~~ 219 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI--------------------------------PA--ADKDIVK 219 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC--------------------------------Cc--CCHHHHH
Confidence 36899999999999999999 899999999976541 11 1245666
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++. + .+.++++|++++.. ++...+.+.+++ +...++.+|.||+|+| ..|+.
T Consensus 220 ~~~~~l~~~-v--~i~~~~~v~~i~~~----------------~~~~~v~~~~~~-~~~~~i~~D~vi~a~G---~~pn~ 276 (471)
T PRK06467 220 VFTKRIKKQ-F--NIMLETKVTAVEAK----------------EDGIYVTMEGKK-APAEPQRYDAVLVAVG---RVPNG 276 (471)
T ss_pred HHHHHHhhc-e--EEEcCCEEEEEEEc----------------CCEEEEEEEeCC-CcceEEEeCEEEEeec---ccccC
Confidence 666666554 5 78899999999862 233455554432 2223689999999999 46666
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 277 ~ 277 (471)
T PRK06467 277 K 277 (471)
T ss_pred C
Confidence 4
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-06 Score=89.19 Aligned_cols=52 Identities=27% Similarity=0.467 Sum_probs=43.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSH 54 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~ 54 (511)
+.+||+|||||++||+||..| .|++|+|+||++.+||..+...+.+.+.++-
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G 55 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTG 55 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccC
Confidence 468999999999999999999 9999999999999999776645555555443
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.5e-05 Score=81.56 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++..+...|.+.+.+.++ .+.+++.|+++...+ +++. -|...+..+++...+.++.||+|||
T Consensus 147 tG~~i~~~L~~~~~~~gi--~i~~~~~v~~Li~~~---------------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 209 (598)
T PRK09078 147 TGHAILHTLYQQSLKHNA--EFFIEYFALDLIMDD---------------GGVCRGVVAWNLDDGTLHRFRAHMVVLATG 209 (598)
T ss_pred CHHHHHHHHHHHHhhcCC--EEEEeEEEEEEEEcC---------------CCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 456777788887877777 889999999987621 2321 1333333345566789999999999
Q ss_pred cc
Q 010421 154 KY 155 (511)
Q Consensus 154 ~~ 155 (511)
.+
T Consensus 210 G~ 211 (598)
T PRK09078 210 GY 211 (598)
T ss_pred CC
Confidence 77
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.4e-05 Score=79.98 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c-CC-CcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R-HH-NPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~-g~-~v~v~e~~~ 35 (511)
..+||+|||||..|+++|.+| . |. +|+|+|++.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 457999999999999999999 4 74 899999965
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-05 Score=81.13 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.||++||.++ .+.+|+|+||....||
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCCCCC
Confidence 57999999999999999999 8899999999876555
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-05 Score=81.21 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=32.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.|||+||..+ .|.+|+|+||....+|
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 47999999999999999999 7899999999876654
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.4e-05 Score=78.38 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..| .|.+|+++++.+.+. +. ..+++..
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--------------------------------~~--~d~~~~~ 214 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--------------------------------RH--LDEDISD 214 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999975441 11 1234555
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..+ .++ .++++++|.+++.. ++...+++.++. ++.+|.|++|+| ..|+.
T Consensus 215 ~l~~~~~-~gI--~i~~~~~V~~i~~~----------------~~~v~v~~~~g~-----~i~~D~vl~a~G---~~pn~ 267 (452)
T TIGR03452 215 RFTEIAK-KKW--DIRLGRNVTAVEQD----------------GDGVTLTLDDGS-----TVTADVLLVATG---RVPNG 267 (452)
T ss_pred HHHHHHh-cCC--EEEeCCEEEEEEEc----------------CCeEEEEEcCCC-----EEEcCEEEEeec---cCcCC
Confidence 5555443 356 78889999999862 233455554432 799999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 268 ~ 268 (452)
T TIGR03452 268 D 268 (452)
T ss_pred C
Confidence 4
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.2e-05 Score=80.46 Aligned_cols=100 Identities=13% Similarity=0.197 Sum_probs=74.8
Q ss_pred CCeEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
.++|+|||||+.|+.+|..+ .|.+|+|+|+.+.+. +.+ .++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--------------------------------~~~--d~~ 232 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--------------------------------RGF--DST 232 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--------------------------------ccc--CHH
Confidence 46899999999999999765 388999999976541 111 356
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.+.+.+..++.++ .++++++|++++... ++...|.+.++. ++.+|.||+|+| ..
T Consensus 233 ~~~~l~~~L~~~GI--~i~~~~~v~~i~~~~---------------~~~~~v~~~~g~-----~i~~D~vl~a~G---~~ 287 (486)
T TIGR01423 233 LRKELTKQLRANGI--NIMTNENPAKVTLNA---------------DGSKHVTFESGK-----TLDVDVVMMAIG---RV 287 (486)
T ss_pred HHHHHHHHHHHcCC--EEEcCCEEEEEEEcC---------------CceEEEEEcCCC-----EEEcCEEEEeeC---CC
Confidence 77888888888888 899999999998621 222345554433 799999999999 45
Q ss_pred CCCC
Q 010421 159 PIIP 162 (511)
Q Consensus 159 p~~p 162 (511)
|+..
T Consensus 288 Pn~~ 291 (486)
T TIGR01423 288 PRTQ 291 (486)
T ss_pred cCcc
Confidence 6654
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.5e-05 Score=80.72 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
++.||+|||+|.|||+||..+ .|.+|+|+||....||
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 457999999999999999999 8999999999776543
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=77.83 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=63.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--------cCCCcEEEcCCCCcCccccCC----------CcCc-------eeccCCCCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--------RHHNPVVFEASDSIGGIWKSC----------SYNS-------TKLQSHRSDY 58 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--------~g~~v~v~e~~~~~GG~w~~~----------~~~~-------~~~~~~~~~~ 58 (511)
..||+|||||||||+||.+| ..++|.|+|+...+||.-... -.|. +.+.+.+..+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~ 155 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF 155 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence 47999999999999999999 456899999999999843220 1121 1122222223
Q ss_pred ccCC----CCCCC----C-CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEE
Q 010421 59 EFTD----FPWPN----R-DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRF 107 (511)
Q Consensus 59 ~~~~----~~~~~----~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 107 (511)
.|-. +|.|. . ...-..+-.++.+||-..++.+|+ .|.-+..+.+|-.
T Consensus 156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~Gv--EiyPg~aaSevly 211 (621)
T KOG2415|consen 156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGV--EIYPGFAASEVLY 211 (621)
T ss_pred eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCc--eeccccchhheeE
Confidence 2211 11221 1 012335678899999999999987 4444444444444
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=4e-05 Score=81.63 Aligned_cols=38 Identities=26% Similarity=0.458 Sum_probs=34.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
...||+|||+|.+||+||..+ .|.+|+|+||.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 357999999999999999999 89999999999887764
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.1e-05 Score=77.50 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=70.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++...+ +. ..+++..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l---------------------------------~~--~~~~~~~ 222 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL---------------------------------SQ--EDPAVGE 222 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC---------------------------------CC--CCHHHHH
Confidence 46899999999999999999 88999999874211 11 1345667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++.+.+... +. ++.+|.||+|+| ..|+.
T Consensus 223 ~l~~~l~~~GI--~v~~~~~v~~i~~~----------------~~~~~v~~~-~~-----~i~~D~vi~a~G---~~pn~ 275 (468)
T PRK14694 223 AIEAAFRREGI--EVLKQTQASEVDYN----------------GREFILETN-AG-----TLRAEQLLVATG---RTPNT 275 (468)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEc----------------CCEEEEEEC-CC-----EEEeCEEEEccC---CCCCc
Confidence 77777888888 89999999999862 223333322 22 689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 276 ~ 276 (468)
T PRK14694 276 E 276 (468)
T ss_pred C
Confidence 4
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.8e-05 Score=80.51 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.|||+||.++ .|.+|+|+||....+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 46999999999999999999 8999999999865544
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-05 Score=82.93 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
.+||+|||+|.||++||.++ .|.+|+|+||....||
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCCCC
Confidence 47999999999999999999 8999999999877665
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=76.84 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
..+|+|||||.+|+++|..| .|++|+|+|++.++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 46899999999999999999 99999999997765
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.1e-05 Score=81.37 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.|||+||..+ .|.+|+|+||....+|
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 36999999999999999999 7899999999875554
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=4e-05 Score=81.78 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC---CCcEEEcCCCCcCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH---HNPVVFEASDSIGG 39 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g---~~v~v~e~~~~~GG 39 (511)
...||+|||+|.|||+||..+ .| .+|+|+||....||
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 357999999999999999999 66 89999999876554
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.6e-05 Score=78.67 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=34.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||+| +|++||..+ .|.+|+|+||.+.+||+...
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 5799999999 899999999 89999999999889985443
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=7e-05 Score=79.18 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.||++||..+ .+.+|+|+||....||
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCCC
Confidence 46999999999999999999 5589999999876665
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.9e-05 Score=78.40 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=35.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIW 41 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w 41 (511)
...||+|||+|.+|+++|..+ .|.+|+|+|+...+||+.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 457999999999999999999 889999999998888753
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.2e-06 Score=90.68 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=70.0
Q ss_pred eEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCc---Cccc--cCCCcCceeccCC------------CCccc--cCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSI---GGIW--KSCSYNSTKLQSH------------RSDYE--FTD 62 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~---GG~w--~~~~~~~~~~~~~------------~~~~~--~~~ 62 (511)
+|+|||||++||++|..| . |++|+|+|++... |... ..+....+....+ ...+. +.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999 4 8999999998753 3110 1100000000000 00000 000
Q ss_pred CCCCCCCCCC--CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCce
Q 010421 63 FPWPNRDDPG--FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSI 140 (511)
Q Consensus 63 ~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (511)
...... ... -..+.++.+.|.+.+.+.++ .++++++|+++...
T Consensus 82 ~~~~~~-g~~~~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i~~~-------------------------------- 126 (765)
T PRK08255 82 RRIRSG-GHGFAGIGRKRLLNILQARCEELGV--KLVFETEVPDDQAL-------------------------------- 126 (765)
T ss_pred EEEEEC-CeeEecCCHHHHHHHHHHHHHHcCC--EEEeCCccCchhhh--------------------------------
Confidence 000000 011 24678999999999988888 78898877654310
Q ss_pred eEEEeCEEEEeecccC
Q 010421 141 QRYGFEFLVVCTGKYG 156 (511)
Q Consensus 141 ~~~~~d~vVlAtG~~~ 156 (511)
...+|.||.|+|.+|
T Consensus 127 -~~~~D~VVgADG~~S 141 (765)
T PRK08255 127 -AADADLVIASDGLNS 141 (765)
T ss_pred -hcCCCEEEEcCCCCH
Confidence 246899999999875
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.7e-05 Score=80.28 Aligned_cols=101 Identities=16% Similarity=0.291 Sum_probs=74.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+++.+.+. +.+ .+++.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--------------------------------~~~--d~~i~~ 282 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--------------------------------RKF--DETIIN 282 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--------------------------------ccC--CHHHHH
Confidence 57899999999999999999 899999999976541 111 346667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .+.++++|.+++... .+...+...++ + .++.+|.|++|+| ..|+.
T Consensus 283 ~l~~~L~~~GV--~i~~~~~V~~I~~~~---------------~~~v~v~~~~~--~--~~i~aD~VlvA~G---r~Pn~ 338 (561)
T PTZ00058 283 ELENDMKKNNI--NIITHANVEEIEKVK---------------EKNLTIYLSDG--R--KYEHFDYVIYCVG---RSPNT 338 (561)
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEecC---------------CCcEEEEECCC--C--EEEECCEEEECcC---CCCCc
Confidence 77777888888 899999999998621 22333433222 1 2689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 339 ~ 339 (561)
T PTZ00058 339 E 339 (561)
T ss_pred c
Confidence 4
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.7e-05 Score=79.75 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+|.|||+||..+ .| +|+|+||....||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 46999999999999999999 67 9999999887665
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.7e-05 Score=78.71 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=74.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
..+++|||||+.|+.+|..| .|.+|+|+++. .+. +. ..+++.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--------------------------------~~--~d~~~~~ 224 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--------------------------------RG--FDQDCAN 224 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc--------------------------------cc--cCHHHHH
Confidence 35799999999999999999 88999999873 220 11 1356777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++++..++.++ .+++++++.+++.. ++...|++.++.+ ..++.+|.||+|+| ..|+.
T Consensus 225 ~l~~~L~~~gV--~i~~~~~v~~v~~~----------------~~~~~v~~~~~~~--~~~i~~D~vl~a~G---~~pn~ 281 (484)
T TIGR01438 225 KVGEHMEEHGV--KFKRQFVPIKVEQI----------------EAKVKVTFTDSTN--GIEEEYDTVLLAIG---RDACT 281 (484)
T ss_pred HHHHHHHHcCC--EEEeCceEEEEEEc----------------CCeEEEEEecCCc--ceEEEeCEEEEEec---CCcCC
Confidence 88888888888 89999999888863 2233455544321 22689999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 282 ~ 282 (484)
T TIGR01438 282 R 282 (484)
T ss_pred C
Confidence 4
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=76.52 Aligned_cols=102 Identities=24% Similarity=0.281 Sum_probs=72.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 214 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL--------------------------------PL--EDPEVSK 214 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--------------------------------cc--hhHHHHH
Confidence 46899999999999999998 889999999976542 10 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++. + .++++++|.+++... +...+++..++ ...++.+|.||+|+| ..|+.
T Consensus 215 ~~~~~l~~~-I--~i~~~~~v~~i~~~~---------------~~~v~~~~~~~---~~~~i~~D~vi~a~G---~~p~~ 270 (460)
T PRK06292 215 QAQKILSKE-F--KIKLGAKVTSVEKSG---------------DEKVEELEKGG---KTETIEADYVLVATG---RRPNT 270 (460)
T ss_pred HHHHHHhhc-c--EEEcCCEEEEEEEcC---------------CceEEEEEcCC---ceEEEEeCEEEEccC---CccCC
Confidence 777777666 7 789999999998621 11222322222 223689999999999 46776
Q ss_pred CC
Q 010421 162 PA 163 (511)
Q Consensus 162 p~ 163 (511)
..
T Consensus 271 ~~ 272 (460)
T PRK06292 271 DG 272 (460)
T ss_pred CC
Confidence 53
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=77.88 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG 39 (511)
.+||+|||+|.|||.||..+ . +.+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999 3 589999999876665
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.01 E-value=9e-05 Score=79.25 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 7 IAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 7 v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
|+|||+|.|||+||..+ .|.+|+|+||...++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 69999999999999999 789999999987443
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.1e-05 Score=81.04 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+++...+ .. ..+++..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l---------------------------------~~--~d~~~~~ 314 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF---------------------------------FR--EDPAIGE 314 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc---------------------------------cc--cCHHHHH
Confidence 46899999999999999999 88999999984211 11 1346677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++.+.+...++ ++.+|.||+|+| ..|+.
T Consensus 315 ~l~~~l~~~gI--~i~~~~~v~~i~~~----------------~~~~~v~~~~~------~i~~D~vi~a~G---~~pn~ 367 (561)
T PRK13748 315 AVTAAFRAEGI--EVLEHTQASQVAHV----------------DGEFVLTTGHG------ELRADKLLVATG---RAPNT 367 (561)
T ss_pred HHHHHHHHCCC--EEEcCCEEEEEEec----------------CCEEEEEecCC------eEEeCEEEEccC---CCcCC
Confidence 78888888888 89999999999862 33344433221 689999999999 46766
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 368 ~ 368 (561)
T PRK13748 368 R 368 (561)
T ss_pred C
Confidence 4
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.1e-05 Score=80.28 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
..||+|||||.|||.||..+ .|.+|+|+|+....+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 47999999999999999999 899999999876543
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=75.09 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=88.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCC---ccchhhhhhhhhhhhcCCCc-hhHHHHH
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWG---LPFFMFYSTRFSQFLHGSPN-QSLLRTL 273 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g---~p~~~~~~~r~~~~~~~~~~-~~~~~~~ 273 (511)
..|+|||+|++|+=.|..+++.+.. |+++.+.+. +-.+....| .++..... ..+++.+-|. ..++++.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~-----V~lid~~~k-~GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRR-----VLLIDKGPK-LGRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCE-----EEEEecCcc-ccceeEecCCCCcccccccc--HHHHHHhCCCcchHHHHH
Confidence 4699999999999999889887764 999998764 111111111 22222111 3445555553 2344444
Q ss_pred HHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc---
Q 010421 274 LCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG--- 349 (511)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~--- 349 (511)
+..+. ++.+-.+++.+-........-++-|... +-..+-+-++..+++.+|+++... |.+++.+.
T Consensus 76 l~~ft---~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sd--------kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f 144 (408)
T COG2081 76 LARFT---PEDFIDWVEGLGIALKEEDLGRMFPDSD--------KASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGF 144 (408)
T ss_pred HHhCC---HHHHHHHHHhcCCeeEEccCceecCCcc--------chHHHHHHHHHHHHHcCcEEEecceEEeEEecCceE
Confidence 43322 2333333333322221111112323210 011122445677888999999876 88887663
Q ss_pred -EEEcCCceeeccEEEEecCCCC
Q 010421 350 -LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 350 -v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
|.+.+|+++.||.+|+|||=..
T Consensus 145 ~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 145 RLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred EEEcCCCCEEEccEEEEecCCcC
Confidence 5667888999999999999554
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0001 Score=78.53 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG 39 (511)
.+||+|||+|.|||+||..+ . +.+|+|+||....||
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999 3 479999999876554
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.8e-05 Score=78.08 Aligned_cols=98 Identities=18% Similarity=0.099 Sum_probs=72.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++. .+. .. ..+++.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--------------------------------~~--~d~~~~~ 226 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL--------------------------------RG--FDRQCSE 226 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc--------------------------------cc--CCHHHHH
Confidence 35899999999999999999 88999999873 220 11 1245667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|.+++.. ++...+.+.++. ++.+|.||+|+| ..|+.
T Consensus 227 ~l~~~l~~~GV--~i~~~~~v~~v~~~----------------~~~~~v~~~~g~-----~i~~D~vl~a~G---~~pn~ 280 (499)
T PTZ00052 227 KVVEYMKEQGT--LFLEGVVPINIEKM----------------DDKIKVLFSDGT-----TELFDTVLYATG---RKPDI 280 (499)
T ss_pred HHHHHHHHcCC--EEEcCCeEEEEEEc----------------CCeEEEEECCCC-----EEEcCEEEEeeC---CCCCc
Confidence 77888888888 88999999888862 222345554443 688999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 281 ~ 281 (499)
T PTZ00052 281 K 281 (499)
T ss_pred c
Confidence 4
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=77.09 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=33.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..||+|||+|++|++||..+ .|.+|+|+||....||.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 57999999999999999999 89999999999887764
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.3e-06 Score=85.06 Aligned_cols=39 Identities=41% Similarity=0.721 Sum_probs=35.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|||||+|||+||..| .| ++|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 4799999999999999999 56 899999999999997665
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00022 Score=76.51 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=73.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++|+|||+|+.|+..|..| .|.+|+++|+.+.+. +. -..++.++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll--------------------------------~~--~d~eis~~ 358 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL--------------------------------PL--LDADVAKY 358 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc--------------------------------cc--CCHHHHHH
Confidence 5899999999999999988 889999999976652 11 13456677
Q ss_pred HHHHH-HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC----CC------ceeEEEeCEEEEe
Q 010421 83 LESYA-KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN----SN------SIQRYGFEFLVVC 151 (511)
Q Consensus 83 l~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~------~~~~~~~d~vVlA 151 (511)
+.... ++.++ .++++++|.+++...+ ....+|.+.+.. ++ ...++.+|.||+|
T Consensus 359 l~~~ll~~~GV--~I~~~~~V~~I~~~~~--------------~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvA 422 (659)
T PTZ00153 359 FERVFLKSKPV--RVHLNTLIEYVRAGKG--------------NQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVA 422 (659)
T ss_pred HHHHHhhcCCc--EEEcCCEEEEEEecCC--------------ceEEEEEEeccccccccccccccccceEEEcCEEEEE
Confidence 76654 56778 8999999999986210 112344433211 01 1136899999999
Q ss_pred ecccCCCCCCCC
Q 010421 152 TGKYGDVPIIPA 163 (511)
Q Consensus 152 tG~~~~~p~~p~ 163 (511)
+| ..|+...
T Consensus 423 tG---r~Pnt~~ 431 (659)
T PTZ00153 423 TG---RKPNTNN 431 (659)
T ss_pred EC---cccCCcc
Confidence 99 5677654
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.3e-05 Score=79.94 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+||+|||||++|+++|..| .|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 357999999999999999999 899999999975
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00013 Score=74.83 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=70.3
Q ss_pred CeEEEECCCHHHHHHHHhc-c---------------CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL-R---------------HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNR 68 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~---------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (511)
++|+|||||+.|+..|..| . +.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 3899999999999999988 2 57899999976541
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEE
Q 010421 69 DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFL 148 (511)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 148 (511)
+.+ .+++.+++++..++.++ .++++++|.+++. + .|.+++++ ++.+|.+
T Consensus 224 --~~~--~~~~~~~~~~~L~~~gV--~v~~~~~v~~v~~-----------------~---~v~~~~g~-----~i~~d~v 272 (424)
T PTZ00318 224 --GSF--DQALRKYGQRRLRRLGV--DIRTKTAVKEVLD-----------------K---EVVLKDGE-----VIPTGLV 272 (424)
T ss_pred --ccC--CHHHHHHHHHHHHHCCC--EEEeCCeEEEEeC-----------------C---EEEECCCC-----EEEccEE
Confidence 111 24677888888888998 8999999998874 1 36666654 7999999
Q ss_pred EEeeccc
Q 010421 149 VVCTGKY 155 (511)
Q Consensus 149 VlAtG~~ 155 (511)
|+|+|..
T Consensus 273 i~~~G~~ 279 (424)
T PTZ00318 273 VWSTGVG 279 (424)
T ss_pred EEccCCC
Confidence 9999954
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=75.89 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
..||+|||+| +|++||.++ .|.+|+|+||.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5799999999 999999999 8999999999887664
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.9e-05 Score=82.83 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=74.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..| .|.+|+|+|+.+.+- + .. -.++...
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll---------------------------~----~~--ld~~~~~ 191 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM---------------------------A----EQ--LDQMGGE 191 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch---------------------------h----hh--cCHHHHH
Confidence 46899999999999999999 899999999875431 0 01 1345667
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+++..++.++ .++++++|+++....+ ...-.|.+.++. ++.+|.||+|+|. .|+.
T Consensus 192 ~l~~~L~~~GV--~v~~~~~v~~I~~~~~--------------~~~~~v~~~dG~-----~i~~D~Vv~A~G~---rPn~ 247 (847)
T PRK14989 192 QLRRKIESMGV--RVHTSKNTLEIVQEGV--------------EARKTMRFADGS-----ELEVDFIVFSTGI---RPQD 247 (847)
T ss_pred HHHHHHHHCCC--EEEcCCeEEEEEecCC--------------CceEEEEECCCC-----EEEcCEEEECCCc---ccCc
Confidence 78888888898 8999999999975211 222345555554 7999999999994 5554
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=97.92 E-value=6e-05 Score=83.16 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=73.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..| .|.+|+|+|+.+.+.. .. -.++...
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~~--ld~~~~~ 186 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------KQ--LDQTAGR 186 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------hh--cCHHHHH
Confidence 46899999999999999999 8999999998654310 11 1235566
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+....+..++ .++++++|+++... ...-.|.+.++. ++.+|.||+|+|. .|+.
T Consensus 187 ~l~~~l~~~GV--~v~~~~~v~~i~~~----------------~~~~~v~~~dG~-----~i~~D~Vi~a~G~---~Pn~ 240 (785)
T TIGR02374 187 LLQRELEQKGL--TFLLEKDTVEIVGA----------------TKADRIRFKDGS-----SLEADLIVMAAGI---RPND 240 (785)
T ss_pred HHHHHHHHcCC--EEEeCCceEEEEcC----------------CceEEEEECCCC-----EEEcCEEEECCCC---CcCc
Confidence 77777788898 89999999888752 222345665554 7999999999994 5554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 241 ~ 241 (785)
T TIGR02374 241 E 241 (785)
T ss_pred H
Confidence 3
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00026 Score=75.59 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=34.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..+||+|||+|.+|+++|..+ .|.+|+|+|+++.+||.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 357999999999999999999 89999999998877774
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=82.17 Aligned_cols=38 Identities=55% Similarity=0.883 Sum_probs=35.4
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+|+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 589999999999999999 89999999999999997655
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=9e-05 Score=75.76 Aligned_cols=96 Identities=23% Similarity=0.372 Sum_probs=74.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++++|||+|+.|+.+|..| .|++|+++|+.+.+++. .+. +++...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-------------------------------~~~--~~~~~~ 183 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-------------------------------LLD--PEVAEE 183 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-------------------------------hhh--HHHHHH
Confidence 6899999999999999999 99999999998877542 111 677888
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE--EEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE--VAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+..+.+++ .+++++++.+++... +.... +...++. .+.+|.+++++|..
T Consensus 184 ~~~~l~~~gi--~~~~~~~~~~i~~~~---------------~~~~~~~~~~~~~~-----~~~~d~~~~~~g~~ 236 (415)
T COG0446 184 LAELLEKYGV--ELLLGTKVVGVEGKG---------------NTLVVERVVGIDGE-----EIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHCCc--EEEeCCceEEEEccc---------------CcceeeEEEEeCCc-----EEEeeEEEEeeccc
Confidence 8888888887 788999999999731 11111 3334443 78999999999953
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00025 Score=75.62 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
.+||+|||+|.+|+++|..+ .|.+|+|+|+...+||...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 46999999999999999999 8999999999888887654
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.5e-05 Score=73.38 Aligned_cols=84 Identities=19% Similarity=0.346 Sum_probs=57.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCC-CChHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGF-PSYTEILD 81 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (511)
+|++|||||.+|+.+|..| .|.+|.|+||++++||.+....-+...+.+-+ + . +..| .+.+.+.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk----Y-------G-pHIFHT~~~~Vwd 69 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK----Y-------G-PHIFHTDNKRVWD 69 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee----c-------c-CceeecCchHHHH
Confidence 7999999999999999988 79999999999999998776322211111100 0 0 1222 35688999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEE
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVR 106 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~ 106 (511)
|+..+.+-. .+.++|..+.
T Consensus 70 yv~~F~e~~------~Y~hrVla~~ 88 (374)
T COG0562 70 YVNQFTEFN------PYQHRVLALV 88 (374)
T ss_pred HHhhhhhhh------hhccceeEEE
Confidence 999887632 2445664433
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00028 Score=74.90 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=33.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..||+|||+|++|+++|..+ .|++|+|+||...+||.
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 57999999999999999999 89999999998877763
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.2e-05 Score=84.36 Aligned_cols=43 Identities=40% Similarity=0.637 Sum_probs=38.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cC-----CCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RH-----HNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g-----~~v~v~e~~~~~GG~w~~ 43 (511)
|.+.+||+|||||++||+||..| .| ++|+|+|+++.+||.+..
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 45568999999999999999999 55 899999999999998765
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.5e-05 Score=82.91 Aligned_cols=50 Identities=30% Similarity=0.586 Sum_probs=42.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCcCceecc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSYNSTKLQ 52 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~ 52 (511)
..+||+|||||++||+||.+| .|. +|+|+|+++.+||.+....+++..++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d 77 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVE 77 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEe
Confidence 357999999999999999999 787 69999999999998887566655443
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00012 Score=77.59 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=34.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..+||+|||+|.+|+++|..+ .|.+|+|+|+....||+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 357999999999999999999 89999999998777765
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-05 Score=82.65 Aligned_cols=39 Identities=31% Similarity=0.631 Sum_probs=36.0
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.+|+|||||.|||+||+.| .|++|+|+|+++++||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 4799999999999999999 79999999999999997654
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=62.87 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=27.8
Q ss_pred EEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 201 AVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 201 ~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|||+|.+|+=++..|.+........+|+++.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 599999999999999998851111356999988654
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=68.73 Aligned_cols=36 Identities=31% Similarity=0.591 Sum_probs=32.0
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIW 41 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w 41 (511)
.|+|||+|.|||+|+..+ .+-.|+++|++..+||.-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 699999999999999999 555599999999999854
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00028 Score=81.13 Aligned_cols=37 Identities=19% Similarity=0.458 Sum_probs=34.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
..||+|||+|.||++||.++ .|.+|+|+||....||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 47999999999999999999 89999999999888875
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=76.94 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=72.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+..|..| .+.+|+|+++.+.+. +. ..+++..
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il--------------------------------~~--~d~~~~~ 297 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL--------------------------------RG--FDEEVRD 297 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 788999999876541 11 1356677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|+++.... ++...+. ..+ ++ ...+|.||+|+|. .|+.
T Consensus 298 ~l~~~L~~~GV--~i~~~~~v~~i~~~~---------------~g~v~v~--~~~-g~--~~~~D~Viva~G~---~Pnt 352 (558)
T PLN02546 298 FVAEQMSLRGI--EFHTEESPQAIIKSA---------------DGSLSLK--TNK-GT--VEGFSHVMFATGR---KPNT 352 (558)
T ss_pred HHHHHHHHCCc--EEEeCCEEEEEEEcC---------------CCEEEEE--ECC-eE--EEecCEEEEeecc---ccCC
Confidence 78777888888 899999999997621 2322332 221 11 3458999999994 5665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 353 ~ 353 (558)
T PLN02546 353 K 353 (558)
T ss_pred C
Confidence 4
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00019 Score=74.03 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
.+..+.+.|...+++.+. .++++++|+++.... ++.+.+.+....+. ..+.++.||+|||.
T Consensus 121 ~g~~l~~~L~~~a~~~Gv--~i~~~~~v~~l~~~~---------------~~g~v~gv~~~~~~--~~i~ak~VIlAtGG 181 (432)
T TIGR02485 121 GGKALTNALYSSAERLGV--EIRYGIAVDRIPPEA---------------FDGAHDGPLTTVGT--HRITTQALVLAAGG 181 (432)
T ss_pred CHHHHHHHHHHHHHHcCC--EEEeCCEEEEEEecC---------------CCCeEEEEEEcCCc--EEEEcCEEEEcCCC
Confidence 356677888888888888 899999999998621 12333333221111 36889999999997
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
++
T Consensus 182 ~~ 183 (432)
T TIGR02485 182 LG 183 (432)
T ss_pred cc
Confidence 64
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.8e-05 Score=82.32 Aligned_cols=40 Identities=38% Similarity=0.571 Sum_probs=36.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--c----CCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R----HHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~----g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||++||+||..| . |++|+|+|+++.+||....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 36999999999999999999 5 8999999999999997654
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.7e-05 Score=78.64 Aligned_cols=39 Identities=44% Similarity=0.762 Sum_probs=35.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|||||++||+||..| .+ .+++|||+.+++||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 3699999999999999999 55 899999999999997665
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=75.37 Aligned_cols=99 Identities=24% Similarity=0.272 Sum_probs=68.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .+.+|+++++.+.+. .. .
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------------------------------------~~----~ 391 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------------------------------------AD----K 391 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC------------------------------------hh----H
Confidence 46899999999999999999 678999999764330 01 1
Q ss_pred HHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+....++ .++ .+++++.|+++...+ +..-.|.+.++.+++..++.+|.||+|+| ..|+
T Consensus 392 ~l~~~l~~~~gV--~i~~~~~v~~i~~~~---------------~~v~~v~~~~~~~~~~~~i~~D~vi~a~G---~~Pn 451 (515)
T TIGR03140 392 VLQDKLKSLPNV--DILTSAQTTEIVGDG---------------DKVTGIRYQDRNSGEEKQLDLDGVFVQIG---LVPN 451 (515)
T ss_pred HHHHHHhcCCCC--EEEECCeeEEEEcCC---------------CEEEEEEEEECCCCcEEEEEcCEEEEEeC---CcCC
Confidence 23333333 577 889999999987520 11223666665444445789999999999 4566
Q ss_pred CC
Q 010421 161 IP 162 (511)
Q Consensus 161 ~p 162 (511)
..
T Consensus 452 ~~ 453 (515)
T TIGR03140 452 TE 453 (515)
T ss_pred ch
Confidence 54
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.6e-05 Score=76.14 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=65.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCC------C---
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNR------D--- 69 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--- 69 (511)
..++|+|||||.++..++..| .+ .+|+++-|+..+-- .....-....-.|...-.|-..|-... .
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~--~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ 266 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFP--MDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHT 266 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCC--CccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhh
Confidence 357899999999999999999 33 57999988654310 000000001111111111111110000 0
Q ss_pred CCCCCChHHH---H--HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 70 DPGFPSYTEI---L--DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 70 ~~~~~~~~~~---~--~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
...-.+.+-+ . -|-+.+..+..+ .++-+++|++++.. +++.|.+++++..+++..++.
T Consensus 267 ny~~i~~~~l~~iy~~lY~~~v~g~~~~--~l~~~~~v~~~~~~---------------~~~~~~l~~~~~~~~~~~~~~ 329 (341)
T PF13434_consen 267 NYGGIDPDLLEAIYDRLYEQRVSGRGRL--RLLPNTEVTSAEQD---------------GDGGVRLTLRHRQTGEEETLE 329 (341)
T ss_dssp TSSEB-HHHHHHHHHHHHHHHHHT---S--EEETTEEEEEEEEE---------------S-SSEEEEEEETTT--EEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCCe--EEeCCCEEEEEEEC---------------CCCEEEEEEEECCCCCeEEEe
Confidence 0011112222 1 112222222223 56678999999984 156899999998777777899
Q ss_pred eCEEEEeecc
Q 010421 145 FEFLVVCTGK 154 (511)
Q Consensus 145 ~d~vVlAtG~ 154 (511)
+|.||+|||.
T Consensus 330 ~D~VilATGy 339 (341)
T PF13434_consen 330 VDAVILATGY 339 (341)
T ss_dssp ESEEEE---E
T ss_pred cCEEEEcCCc
Confidence 9999999995
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00026 Score=74.42 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=29.9
Q ss_pred CCeEEEECCCHHHHHHHHhccCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQLRHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l~g~~v~v~e~~~~ 36 (511)
..||+|||+|.||++||.++.+.+|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLAPRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhCcCCEEEEECCCC
Confidence 479999999999999999996679999999775
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=70.03 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=70.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|..|+.+|..| .+.+|+++++.+.+. ....+.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~------------------------------------~~~~~~~ 189 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR------------------------------------AEKILIK 189 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC------------------------------------CCHHHHH
Confidence 46899999999999999999 778999999964320 1123345
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC-CCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN-SNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+.+..++.++ .+.++++|++++... .+.-.|++.+.. .+...++.+|.||+|+|. .|+
T Consensus 190 ~~~~~l~~~gV--~i~~~~~v~~v~~~~---------------~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~---~p~ 249 (321)
T PRK10262 190 RLMDKVENGNI--ILHTNRTLEEVTGDQ---------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIGH---SPN 249 (321)
T ss_pred HHHhhccCCCe--EEEeCCEEEEEEcCC---------------ccEEEEEEEEcCCCCeEEEEECCEEEEEeCC---ccC
Confidence 55555566677 788899999997520 122235555442 123347899999999994 555
Q ss_pred CC
Q 010421 161 IP 162 (511)
Q Consensus 161 ~p 162 (511)
..
T Consensus 250 ~~ 251 (321)
T PRK10262 250 TA 251 (321)
T ss_pred hh
Confidence 43
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.9e-05 Score=81.63 Aligned_cols=40 Identities=48% Similarity=0.645 Sum_probs=36.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||++||+||..| . |++|+|+|+++.+||....
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 46899999999999999999 6 8999999999999997655
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.9e-05 Score=81.49 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=40.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceecc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQ 52 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~ 52 (511)
+||+|||||++||+||..| .|++|+|+|+++.+||.......++...+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD 51 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFD 51 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEe
Confidence 6899999999999999999 99999999999999997655344454443
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.4e-05 Score=78.85 Aligned_cols=39 Identities=41% Similarity=0.634 Sum_probs=35.7
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|+|||.|||+||+.| .|++|+|+|+++.+||....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 4799999999999999999 99999999999999985443
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0005 Score=69.19 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=65.1
Q ss_pred CCeEEEECCCHHHHHHHHhc-c-----C--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-R-----H--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPS 75 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~-----g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (511)
.++|+|||+|++|+.+|..| . + .+|+|+ ..+.+. .. .
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l--------------------------------~~--~ 189 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL--------------------------------PG--F 189 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc--------------------------------cc--C
Confidence 35899999999999999988 2 3 478888 322220 11 1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+++...+.+..++.++ .+.++++|.+++. + .|.+.++. ++.+|.||+|+|..
T Consensus 190 ~~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~-----------------~---~v~~~~g~-----~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 190 PAKVRRLVLRLLARRGI--EVHEGAPVTRGPD-----------------G---ALILADGR-----TLPADAILWATGAR 242 (364)
T ss_pred CHHHHHHHHHHHHHCCC--EEEeCCeeEEEcC-----------------C---eEEeCCCC-----EEecCEEEEccCCC
Confidence 24566777778888888 8899999988753 2 36665543 79999999999954
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.8e-05 Score=76.60 Aligned_cols=39 Identities=31% Similarity=0.466 Sum_probs=35.3
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+||+|||||++|+++|..| .|.+|+|+|+++.+||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 5999999999999999999 78999999999999995443
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00038 Score=67.79 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=63.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|++|+.+|..| .+.+|+++++.+.+. ....
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------------------------------------~~~~--- 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------------------------------------AEKI--- 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC------------------------------------cCHH---
Confidence 46899999999999999999 678999999864220 0112
Q ss_pred HHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 82 YLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 82 yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+.+.+++. ++ .+.++++|+++... +..-.+.+.+..++...++.+|.||+|+|.
T Consensus 182 -~~~~l~~~~gv--~~~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 182 -LLDRLRKNPNI--EFLWNSTVKEIVGD----------------NKVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred -HHHHHHhCCCe--EEEeccEEEEEEcc----------------CcEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 22233333 76 78889999998762 211234454433334457899999999994
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=73.34 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
.+|+|||||.+|+.+|..| .|++|+|||+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 3799999999999999999 899999999877654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.9e-05 Score=80.79 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=37.2
Q ss_pred EEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCcee
Q 010421 7 IAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTK 50 (511)
Q Consensus 7 v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~ 50 (511)
|+|||||.+||+||..| .|++|+|+|+++.+||........+.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~ 46 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFR 46 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeE
Confidence 68999999999999999 999999999999999976653333433
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00042 Score=69.01 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=79.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
...|+++|+|..|+.+|..| .+.+|+++++.+.+ ++ . .-...+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~---------------------------~~----~--lf~~~i~~ 259 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL---------------------------LP----R--LFGPSIGQ 259 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------------------------hh----h--hhhHHHHH
Confidence 45799999999999999999 88999999997432 11 1 23567778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
..+.|.++.++ .+.+++.+.+++-..+ ...-.|.+.++. ++.+|.||+++| ..|+.
T Consensus 260 ~~~~y~e~kgV--k~~~~t~~s~l~~~~~--------------Gev~~V~l~dg~-----~l~adlvv~GiG---~~p~t 315 (478)
T KOG1336|consen 260 FYEDYYENKGV--KFYLGTVVSSLEGNSD--------------GEVSEVKLKDGK-----TLEADLVVVGIG---IKPNT 315 (478)
T ss_pred HHHHHHHhcCe--EEEEecceeecccCCC--------------CcEEEEEeccCC-----EeccCeEEEeec---ccccc
Confidence 88888888888 8999999988886321 122346666665 899999999999 56777
Q ss_pred CCCC
Q 010421 162 PAFP 165 (511)
Q Consensus 162 p~~~ 165 (511)
+.+.
T Consensus 316 ~~~~ 319 (478)
T KOG1336|consen 316 SFLE 319 (478)
T ss_pred cccc
Confidence 6554
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.5e-05 Score=80.02 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=40.6
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceecc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQ 52 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~ 52 (511)
+||+|||||.+||++|..| .|.+|+|+||++.+||.......++...+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd 50 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFD 50 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEE
Confidence 5899999999999999999 89999999999999997665344554443
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.5e-05 Score=76.29 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce--EEEEEeCCCCceeEEEeCEEEEe
Q 010421 74 PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW--EVAVQTHNSNSIQRYGFEFLVVC 151 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~d~vVlA 151 (511)
..+.++.++|.+.+.+.|+ .+..+ +|+.+... .+.+ .|.+.++. ++.+|.||-|
T Consensus 151 lDR~~fd~~L~~~A~~~Gv--~~~~g-~V~~v~~~----------------~~g~i~~v~~~~g~-----~i~ad~~IDA 206 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGV--EVIEG-TVVDVELD----------------EDGRITAVRLDDGR-----TIEADFFIDA 206 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT---EEEET--EEEEEE-----------------TTSEEEEEEETTSE-----EEEESEEEE-
T ss_pred EeHHHHHHHHHHHHhcCCC--EEEeC-EEEEEEEc----------------CCCCEEEEEECCCC-----EEEEeEEEEC
Confidence 4688999999999999998 55544 68888873 2233 34443432 7999999999
Q ss_pred ecccC
Q 010421 152 TGKYG 156 (511)
Q Consensus 152 tG~~~ 156 (511)
||..+
T Consensus 207 SG~~s 211 (454)
T PF04820_consen 207 SGRRS 211 (454)
T ss_dssp SGGG-
T ss_pred CCccc
Confidence 99763
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=4.6e-05 Score=79.37 Aligned_cols=39 Identities=28% Similarity=0.544 Sum_probs=34.6
Q ss_pred CeEEEECCCHHHHHHHHhc--c------CCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R------HHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~------g~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|||||+|||+||..| . +.+|+|+|+++++||....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 4799999999999999999 3 2789999999999997554
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00043 Score=69.32 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=29.1
Q ss_pred eEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCc
Q 010421 6 KIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSI 37 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~ 37 (511)
||+|||+|.+||++|..| ..++|+|+.|...-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 899999999999999999 66999999997643
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00068 Score=76.12 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.+||+|||+|.|||.||.++ .|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999 8899999999764
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00056 Score=72.14 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||.+|+.+|..| .+.+|+++++.+.+. . . .
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~--------------------------------~----~----~ 390 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK--------------------------------A----D----Q 390 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc--------------------------------c----c----H
Confidence 46899999999999999999 778999998864430 0 0 1
Q ss_pred HHHHHHH-hcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 82 YLESYAK-HFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 82 yl~~~~~-~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
++..... ..++ .+++++.|+++... ++.- .+.+.+..+++..++.+|.|++|+|. .|
T Consensus 391 ~l~~~l~~~~gI--~i~~~~~v~~i~~~----------------~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~---~p 449 (517)
T PRK15317 391 VLQDKLRSLPNV--TIITNAQTTEVTGD----------------GDKVTGLTYKDRTTGEEHHLELEGVFVQIGL---VP 449 (517)
T ss_pred HHHHHHhcCCCc--EEEECcEEEEEEcC----------------CCcEEEEEEEECCCCcEEEEEcCEEEEeECC---cc
Confidence 2333333 3467 88999999999862 2222 25566554455557999999999994 45
Q ss_pred CCC
Q 010421 160 IIP 162 (511)
Q Consensus 160 ~~p 162 (511)
+..
T Consensus 450 ~~~ 452 (517)
T PRK15317 450 NTE 452 (517)
T ss_pred Cch
Confidence 543
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00054 Score=73.01 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.7
Q ss_pred eEEEECCCHHHHHHHHhcc------CCCcEEEcCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQLR------HHNPVVFEASDS 36 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l~------g~~v~v~e~~~~ 36 (511)
||+|||||.|||.||..+. |.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999982 789999999654
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=5.2e-05 Score=71.97 Aligned_cols=40 Identities=45% Similarity=0.720 Sum_probs=36.8
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG~w~~ 43 (511)
..+|+|||+|++||+||..| ..++|++||....+||.-+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccce
Confidence 46899999999999999999 88999999999999997665
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00047 Score=72.48 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
...+||+|||||.|||.||..+ .|.+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 3467999999999999999999 889999999976554
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.8e-05 Score=76.23 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=40.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|...+||+|||+|.+|+.+|..| .|.+|+++|+++..||.|..
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 77789999999999999999999 99999999999999998876
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.52 E-value=8e-05 Score=77.34 Aligned_cols=38 Identities=45% Similarity=0.788 Sum_probs=34.8
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+|+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 589999999999999999 89999999999999996543
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=75.82 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=31.4
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+++|+|||+|++|+..|..|++... +.+|+++.|.+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~---g~~Vtv~E~~p~ 62 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHD---GARVDIIERLPT 62 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC---CCeEEEEecCCC
Confidence 457899999999999999999986311 135999999874
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0001 Score=79.41 Aligned_cols=40 Identities=38% Similarity=0.539 Sum_probs=36.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 57999999999999999999 89999999999999987554
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=63.90 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..||+|||||.+|.+.|..| .|.+|.|+||.
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 47999999999999999999 89999999984
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00037 Score=70.51 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
|...+||+|||||.||+.||... .|.++.++--+
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 45569999999999999999998 78887766543
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00026 Score=70.27 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=32.8
Q ss_pred hhhcc-CeEEEEeCceeEEe-CC----cEEEcCCceeeccEEEEecCC
Q 010421 328 SEAEK-GKIVFKRASKWWFW-KG----GLEFEDNTKLEADVVILCTGY 369 (511)
Q Consensus 328 ~~l~~-g~v~v~~~~i~~~~-~~----~v~~~dG~~~~~D~VI~aTG~ 369 (511)
+.+.+ ++|++..+.|..+. ++ ||++.+|+++.+|.||.|||.
T Consensus 103 ~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 103 EKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 44544 89999988888874 33 488999999999999999999
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00065 Score=63.82 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=32.1
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~G 38 (511)
.+|+||||||+.|++.|++| .+.+|.|+|+...++
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 58999999999999999999 589999999988775
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=65.78 Aligned_cols=58 Identities=17% Similarity=0.433 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++..-+.++.+.+|. .++|+++|++++..+ +....|.++++. ++.+|+||+|.|+.+
T Consensus 173 ~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~~---------------~~~~~v~~~~g~-----~i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGG--EIRFNTEVEDIEIED---------------NEVLGVKLTKGE-----EIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCc--EEEeeeEEEEEEecC---------------CceEEEEccCCc-----EEecCEEEEccCcch
Confidence 4566667888888887 899999999999841 222345556655 899999999999863
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0075 Score=62.41 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|..|+-+|..| .|.+|++++++.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 36899999999999999999 888999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=71.27 Aligned_cols=41 Identities=32% Similarity=0.528 Sum_probs=37.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+..||+|||||.+||.+|..| .|++|+|+|.++.+||....
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 457999999999999999999 99999999999999996543
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=76.23 Aligned_cols=40 Identities=28% Similarity=0.596 Sum_probs=36.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC--CcCcc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD--SIGGI 40 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~--~~GG~ 40 (511)
|....||+|||+|.+||+||..+ .|.+|+|+||.+ ..||.
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 66788999999999999999999 899999999988 66664
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0071 Score=62.79 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=28.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|..|+.+|..| .|.+|+++++++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 46899999999999999998 888899999864
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0002 Score=77.75 Aligned_cols=40 Identities=35% Similarity=0.564 Sum_probs=36.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+|||||++|+++|..| .|++|+|+|+++.+||....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 47899999999999999999 89999999999999997554
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00021 Score=74.41 Aligned_cols=38 Identities=39% Similarity=0.657 Sum_probs=34.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+|+|||||++|+++|..| .|++|+|+|+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 589999999999999999 89999999999999986443
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0062 Score=60.94 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~ 35 (511)
++|+|||+|..|+.+|..| .+.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 6899999999999999998 7887 99999853
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00026 Score=74.60 Aligned_cols=39 Identities=38% Similarity=0.628 Sum_probs=35.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
++|+|||||++||++|..| .|++|+|+|+++.+||.+..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s 116 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGS 116 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceee
Confidence 5999999999999999999 89999999999999986653
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0008 Score=69.11 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=34.7
Q ss_pred hhhhhccCeEEEEeCceeEEeCC----cEEEcCCceeeccEEEEecCCCCc
Q 010421 326 FFSEAEKGKIVFKRASKWWFWKG----GLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 326 ~~~~l~~g~v~v~~~~i~~~~~~----~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+.+.+.+++++.+.|.+++.+ .|+++||.++++|.||.|+|.+..
T Consensus 120 Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 120 MLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 34444555678876667776533 277889989999999999998764
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.01 Score=61.59 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=28.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.++|+|||+|..|+.+|..| .|. +|+++++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999 677 799999853
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=65.97 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=36.7
Q ss_pred CCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcCCceeeccEEEEecCCCCcc
Q 010421 323 PEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 323 ~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
.+.+.+.+.+.+++++.+. +.+++.+ + |.+.||+++.+|.||.|+|.....
T Consensus 110 ~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 110 ARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 3445555666677887774 6666532 2 677899999999999999997653
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00061 Score=66.76 Aligned_cols=99 Identities=20% Similarity=0.300 Sum_probs=72.0
Q ss_pred eEEEECCCHHHHHHHHhc----------------cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL----------------RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRD 69 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l----------------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (511)
.++||||||.|+..|.+| ..++|+++|..+.+=
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------- 268 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------- 268 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-------------------------------
Confidence 589999999999999998 235799999976541
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEE
Q 010421 70 DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLV 149 (511)
Q Consensus 70 ~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 149 (511)
.. -...+.+|.+....+.++ .++.++.|..|... +|....+ +|+..++.|-.+|
T Consensus 269 -~m--Fdkrl~~yae~~f~~~~I--~~~~~t~Vk~V~~~--------------------~I~~~~~-~g~~~~iPYG~lV 322 (491)
T KOG2495|consen 269 -NM--FDKRLVEYAENQFVRDGI--DLDTGTMVKKVTEK--------------------TIHAKTK-DGEIEEIPYGLLV 322 (491)
T ss_pred -HH--HHHHHHHHHHHHhhhccc--eeecccEEEeecCc--------------------EEEEEcC-CCceeeecceEEE
Confidence 11 134566777777777777 78888888888752 3666555 3555689999999
Q ss_pred EeecccCCCCCCC
Q 010421 150 VCTGKYGDVPIIP 162 (511)
Q Consensus 150 lAtG~~~~~p~~p 162 (511)
-|||.. ..|.+-
T Consensus 323 WatG~~-~rp~~k 334 (491)
T KOG2495|consen 323 WATGNG-PRPVIK 334 (491)
T ss_pred ecCCCC-Cchhhh
Confidence 999976 355443
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0004 Score=69.81 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=34.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||..|..+|.-. .|+++.++|+++...|+-+.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSk 108 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSK 108 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCcccc
Confidence 48999999999999999888 99999999998776665443
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0004 Score=77.74 Aligned_cols=36 Identities=22% Similarity=0.026 Sum_probs=32.4
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|+|||+|++|+-.|..|++.+.. ||++.+.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~-----VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFP-----VTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCe-----EEEEeeCC
Confidence 4689999999999999999999998765 99999875
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00038 Score=68.16 Aligned_cols=39 Identities=36% Similarity=0.566 Sum_probs=32.9
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCcccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~ 42 (511)
.++|+|+|||.+||++|.+| ....|++||+.+++||-..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 47999999999999999999 3445788999999998433
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0054 Score=61.68 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||+|.||+.+|.+|.+.... ..+ |+++.+++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~-~~~-Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRP-SGL-ISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCC-CCc-eEEeccccc
Confidence 4799999999999999999987442 222 888888764
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00046 Score=75.13 Aligned_cols=40 Identities=40% Similarity=0.533 Sum_probs=36.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+|||||++|+.+|..| .|++|+|+|+++.+||.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 47899999999999999999 89999999999999997664
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00044 Score=73.55 Aligned_cols=39 Identities=41% Similarity=0.688 Sum_probs=35.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
.++|+|||||++||++|..| .|++|+|+|+++.+||.-.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 46899999999999999999 8999999999999998543
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0005 Score=69.04 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
.+||+|||||++|+.+|..| .|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 36999999999999999999 99999999987654
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0051 Score=65.46 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=29.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 46899999999999999998 7899999998643
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00077 Score=68.80 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=30.7
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHh-cCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAES-NQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~-~~~~~~~~Vtl~~R~~~ 236 (511)
..+++|+|||+|++|+.+|..|+.. +. +|+++.|.|.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~-----~VtlfEk~p~ 74 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV-----KVDIFEKLPN 74 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC-----eEEEEecCCC
Confidence 3578999999999999999987654 43 4999999875
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00052 Score=77.48 Aligned_cols=40 Identities=38% Similarity=0.581 Sum_probs=37.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+|||||++|+++|..| .|++|+|||+++.+||.|..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 47899999999999999999 89999999999999998766
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=64.82 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=28.6
Q ss_pred eCceeEEeCCcEEEcCCceeeccEEEEecCCCC
Q 010421 339 RASKWWFWKGGLEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 339 ~~~i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
...+.++++++|+++||+++.+|.||.|.|.++
T Consensus 106 ~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 106 GRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred cCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 345788888889999999999999999999775
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00067 Score=70.87 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=35.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+||+|||+|++|+.+|+.| .|++|+|+|+....||.|-.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g 41 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIG 41 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCccc
Confidence 5899999999999999999 89999999999999987754
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.021 Score=59.50 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.++|+|||+|..|+.+|..+ .|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 36899999999999999877 665 688776643
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00039 Score=70.38 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=31.2
Q ss_pred CchhhhhccCeEEEEeCc-eeEEe--CCc---EEEcCCceeeccEEEEecCCCCc
Q 010421 324 EGFFSEAEKGKIVFKRAS-KWWFW--KGG---LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 324 ~~~~~~l~~g~v~v~~~~-i~~~~--~~~---v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+...+++-+|+++.+. |..+. +++ |.++++.++.+|.||+|||-..-
T Consensus 113 ~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 113 DALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred HHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 445566777789999875 77774 455 66667888999999999998763
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.029 Score=62.15 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~ 35 (511)
.++|+|||||..|+-+|..+ .|.+ |+++++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999 7887 99999864
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0025 Score=70.80 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=32.6
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|+|||+|++|+.+|..|++.+.. |+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~-----VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHP-----VTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCe-----EEEEecccc
Confidence 4689999999999999999999998764 999998764
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=55.11 Aligned_cols=39 Identities=31% Similarity=0.557 Sum_probs=32.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cC------CCcEEEcCCCCcCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RH------HNPVVFEASDSIGG 39 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g------~~v~v~e~~~~~GG 39 (511)
|.+.++|+|+|||+.|+++|..| .+ ++|+|||+..-.||
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 34678999999999999999999 33 68999999765554
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.013 Score=59.38 Aligned_cols=40 Identities=33% Similarity=0.419 Sum_probs=34.6
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++.=|||+|.|+|+||..| +|-+|+|+|+.+..||....
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg 47 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDG 47 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccC
Confidence 35788999999999999999 66789999999998886554
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0028 Score=63.87 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=30.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||+|.+|.-+|..|++.+.. |+++.|++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~-----v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS-----VTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-----EEEEcCCCC
Confidence 4799999999999999999988765 999999875
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0048 Score=63.85 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 74 PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+...-+.+-|...|+++|. .|..++.|++|.-.. ++.|-|.+..+ .+++.++|-|+|
T Consensus 184 ~DP~~lC~ala~~A~~~GA--~viE~cpV~~i~~~~---------------~~~~gVeT~~G------~iet~~~VNaaG 240 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGA--LVIENCPVTGLHVET---------------DKFGGVETPHG------SIETECVVNAAG 240 (856)
T ss_pred cCHHHHHHHHHHHHHhcCc--EEEecCCcceEEeec---------------CCccceeccCc------ceecceEEechh
Confidence 3445566777788888998 899999999998742 45566776666 689999999999
Q ss_pred cc
Q 010421 154 KY 155 (511)
Q Consensus 154 ~~ 155 (511)
..
T Consensus 241 vW 242 (856)
T KOG2844|consen 241 VW 242 (856)
T ss_pred HH
Confidence 75
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0079 Score=58.98 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=37.3
Q ss_pred ceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 95 CVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 95 ~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.-+++|.+++.. ++|++.+.+...++++..++..|.||+|||..
T Consensus 294 ~l~~~~ev~~~~~~---------------G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 294 RLLSLSEVQSVEPA---------------GDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred eeccccceeeeecC---------------CCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 34557888888873 36778999988877888899999999999965
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0015 Score=65.81 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=35.0
Q ss_pred hhhccCeEEEEeCceeEEeCCc----EEEcCCceeeccEEEEecCCCCc
Q 010421 328 SEAEKGKIVFKRASKWWFWKGG----LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 328 ~~l~~g~v~v~~~~i~~~~~~~----v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+.++++.+....|.+++.++ |+++||+++.++.||-|+|....
T Consensus 95 ~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 95 ERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 4444566777777788887655 58899999999999999997653
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0056 Score=64.51 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=29.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
-.|+|||||.+|+++|..+++.+.+ |.++.+.+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~k-----V~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAK-----TLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCc-----EEEEeccc
Confidence 3699999999999999999998765 99998864
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=62.01 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||+|.+|+=+|..|++... ..+|+++.+++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~---~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQT---PLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCC---CCcEEEEecCCC
Confidence 579999999999999999987643 246999998653
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.044 Score=57.03 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=28.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~ 36 (511)
.++|+|||+|..|+.+|..+ .|. +|+|+++++.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 37899999999999999987 775 6999998643
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.051 Score=58.99 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.++|+|||+|..|+.+|..+ .|. +|+|+.+++
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47899999999999999998 665 599998864
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0048 Score=62.60 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=28.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|.-+|..|++.+. +|+++.+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~-----~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL-----RVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-----eEEEEccCCC
Confidence 48999999999999999987765 4999998764
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0014 Score=63.82 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=26.6
Q ss_pred CeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~ 36 (511)
+|++|||+|++|..+|.+| .+ .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 6999999999999999999 44 79999999753
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.007 Score=61.39 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=31.7
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
...+|+|||||.+|.-+|..|++.+.+ |+++.|.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWD-----VDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC-----EEEEecCCC
Confidence 347899999999999999999998765 999999864
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.057 Score=58.77 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.++|+|||+|..|+-+|..+ .|. +|+++.+++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 36899999999999999877 775 699988764
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0036 Score=65.53 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=28.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|.+|+++|..| .|.+|+++|++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999999999 89999999975
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0097 Score=59.27 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA 33 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~ 33 (511)
..+||+|||||.||..||... .|.+.+++-.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 357999999999999998888 7877766654
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0061 Score=63.85 Aligned_cols=47 Identities=9% Similarity=0.182 Sum_probs=33.4
Q ss_pred chhhhhccCeEEEEeCceeEEeC--Cc---EEEcCCceeeccEEEEecCCCC
Q 010421 325 GFFSEAEKGKIVFKRASKWWFWK--GG---LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~~i~~~~~--~~---v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
.+.+.+.+.++++....+..++. ++ +++.+|.++.+|+||.|+|...
T Consensus 197 ~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 197 ELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 34444455567776666777753 33 3567888999999999999976
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0025 Score=67.99 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~ 35 (511)
|+..+|+||||+|++|+.+|.+| .+.+|+|+|+..
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45568999999999999999999 589999999985
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0073 Score=61.39 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=29.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||||.+|.=+|..|++.+.. |+++.|.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE-----PTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc-----eEEEeCCCC
Confidence 699999999999999999998765 999999864
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0015 Score=59.48 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=26.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||+|.+|+.+|..|++.+. +|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~-----~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA-----KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-----EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC-----eEEEEeccc
Confidence 59999999999999999997665 488885544
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0067 Score=62.77 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=28.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|.+|+-.|..| .+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 47899999999999999999 667899998854
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=60.12 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=31.1
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|.=+|..|++.+.. |+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~-----v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK-----VKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc-----EEEEeeCcc
Confidence 46899999999999999999998765 999999874
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.12 Score=56.06 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=27.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~ 36 (511)
.++|+|||+|..|+.+|..+ .|. +|+++.+++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 36899999999999999876 674 7999988643
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.01 Score=54.04 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=23.5
Q ss_pred EEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 201 AVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 201 ~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|||+|.+|+-+|..|.+.+.. +|+++.|.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~----~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID----PVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-------EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCC----cEEEEeCCC
Confidence 6999999999999999988653 499999874
|
... |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0092 Score=60.68 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=36.3
Q ss_pred CchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCc
Q 010421 324 EGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 324 ~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+.+.+++.+++++.+. +.+++. ++ |++++|+++.+|.||.|+|....
T Consensus 117 ~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 117 DRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 345556667788888764 666643 33 56678888999999999999874
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.028 Score=57.86 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
...+|+|||+|.||+=+|..|.+.+.. .+.++.++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~----~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVP----DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCC----cEEEEEccC
Confidence 346899999999999999999998764 288888874
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0039 Score=59.16 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|++||+|||||.+|++|+.+| .|.+.+|+.+..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 358999999999999999999 999999998854
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.019 Score=60.44 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.2
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+++|..+++.+.. |.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~-----v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAK-----TLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCC-----EEEEeccc
Confidence 499999999999999999988765 99998864
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=66.03 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+++|+|||||++|+..|..|++.+.. |+++.+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~-----VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHP-----VTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe-----EEEEecccc
Confidence 468999999999999999999998765 999988753
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.024 Score=57.55 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.2
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||||.+|+-+|..|++.+.+ |+++.|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLK-----VTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc-----EEEEeCCCc
Confidence 4699999999999999999998765 999999874
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0085 Score=60.80 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=30.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||||.+|+=+|..|++.+-+ |+++.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~-----v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHS-----VTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCc-----EEEEeCCCc
Confidence 3799999999999999999998765 999999875
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.017 Score=60.46 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..|+|||+|.+|+=+|..|++.+.. |+++.|.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~-----v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVD-----VAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 4699999999999999999998765 999999864
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0016 Score=57.63 Aligned_cols=39 Identities=33% Similarity=0.601 Sum_probs=33.9
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCc-cccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGG-IWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG-~w~~ 43 (511)
.||+|||||.+||++|+.+ ++++|.|+|.+-.+|| .|..
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLG 120 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLG 120 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccccc
Confidence 5899999999999999998 6789999999877764 5654
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.028 Score=56.12 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=50.2
Q ss_pred CCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 71 PGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 71 ~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
..|| ...++.+-|...+++.++ .++++++|++|+ ++.|.|.+..+. . .+.||+
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i~------------------~~~~~v~~~~~~--~--~~~a~~ 132 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGV--QFHTRHRWIGWQ------------------GGTLRFETPDGQ--S--TIEADA 132 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEe------------------CCcEEEEECCCc--e--EEecCE
Confidence 4555 678899999999999999 899999999993 334777764321 1 589999
Q ss_pred EEEeecccCCCCCC
Q 010421 148 LVVCTGKYGDVPII 161 (511)
Q Consensus 148 vVlAtG~~~~~p~~ 161 (511)
||+|||..+ .|..
T Consensus 133 vIlAtGG~s-~p~~ 145 (376)
T TIGR03862 133 VVLALGGAS-WSQL 145 (376)
T ss_pred EEEcCCCcc-cccc
Confidence 999999863 4443
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.015 Score=55.01 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=28.3
Q ss_pred eeEEe--CCcEEEcCCceeeccEEEEecCCCCccccc
Q 010421 342 KWWFW--KGGLEFEDNTKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 342 i~~~~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~ 376 (511)
+.+++ .+.|++.+|++|..|.+|.|+|.+.++...
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~I 150 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKI 150 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchh
Confidence 34454 456999999999999999999999987543
|
|
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.05 Score=53.55 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=29.8
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCcEEEcCC--CCcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNPVVFEAS--DSIG 38 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~--~~~G 38 (511)
.+||+|+||||.|++.|..| ...++.++|.. +..+
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~ 78 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLG 78 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccc
Confidence 58999999999999999999 45689999987 4444
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.042 Score=52.74 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++++|+|||+.++..|--+ .|.++-++=|.+.+ .+.| .+.+.
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv--------------------------------LR~F--D~~i~ 233 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV--------------------------------LRGF--DEMIS 233 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh--------------------------------hcch--hHHHH
Confidence 357999999999999888887 77888888776554 1222 34566
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.+.+..+.-++ +++-++.++.+.... ++...+....+. ....|.|+.|+| ..|+
T Consensus 234 ~~v~~~~~~~gi--nvh~~s~~~~v~K~~---------------~g~~~~i~~~~~-----i~~vd~llwAiG---R~Pn 288 (478)
T KOG0405|consen 234 DLVTEHLEGRGI--NVHKNSSVTKVIKTD---------------DGLELVITSHGT-----IEDVDTLLWAIG---RKPN 288 (478)
T ss_pred HHHHHHhhhcce--eecccccceeeeecC---------------CCceEEEEeccc-----cccccEEEEEec---CCCC
Confidence 777777777777 788888999988742 443444444442 345999999999 6777
Q ss_pred CCCC
Q 010421 161 IPAF 164 (511)
Q Consensus 161 ~p~~ 164 (511)
.-++
T Consensus 289 tk~L 292 (478)
T KOG0405|consen 289 TKGL 292 (478)
T ss_pred cccc
Confidence 6543
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.012 Score=59.98 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=36.0
Q ss_pred CchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCc
Q 010421 324 EGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 324 ~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
..+.+.+.+.+++++.+. +..++. ++ |+++||+.+.+|.||.|+|....
T Consensus 115 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 115 NALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 445566666678888664 667653 33 56778988999999999999764
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.02 Score=57.88 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=34.9
Q ss_pred Cchhhhhcc-CeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCC
Q 010421 324 EGFFSEAEK-GKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 324 ~~~~~~l~~-g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
..+.+.+.+ .+++++.+. +.+++. ++ |.+++|+++.+|.||.|.|...
T Consensus 109 ~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 109 QALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 344455555 488888654 777743 33 6677888899999999999875
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.057 Score=52.45 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=65.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|-+++..|..| -+-+|+++=|++.+ -..+.+.+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~------------------------------------ra~~~~~~ 186 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF------------------------------------RAEEILVE 186 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc------------------------------------CcCHHHHH
Confidence 46999999999999999999 55679999987554 11223333
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
-++. +-++ .+++++++.++.-. +.-.|.+++.. ++...+.+|.|+++.|+.
T Consensus 187 ~l~~---~~~i--~~~~~~~i~ei~G~-----------------~v~~v~l~~~~-~~~~~~~~~gvf~~iG~~ 237 (305)
T COG0492 187 RLKK---NVKI--EVLTNTVVKEILGD-----------------DVEGVVLKNVK-GEEKELPVDGVFIAIGHL 237 (305)
T ss_pred HHHh---cCCe--EEEeCCceeEEecC-----------------ccceEEEEecC-CceEEEEeceEEEecCCC
Confidence 2221 1245 78889999988762 12247777654 455588999999999953
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.026 Score=56.91 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=30.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||||.+|.=+|..|++.+.+ |+++.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~-----v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE-----VKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-----EEEEecCCc
Confidence 699999999999999999998765 999999875
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0098 Score=54.27 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=30.5
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
..+++|+|||||.+|..-+..|.+.++. |+++...
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~-----VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQ-----LRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCE-----EEEEcCC
Confidence 5789999999999999999999998765 8888653
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.013 Score=55.83 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=29.7
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~~~ 36 (511)
..||+|||+|-.|.+.|.-| .|++|+|+|+++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 46899999999999999999 5699999999764
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0094 Score=67.55 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+++|+|||+|++|+..|..|++.+.. |+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~-----VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVD-----VTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc-----EEEEecCC
Confidence 578999999999999999999998765 99998875
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.025 Score=59.62 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||+|.+|.=+|..|++.+.. |+++.|.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~-----v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS-----FRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 4699999999999999999998865 999999864
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.015 Score=59.05 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=30.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||||.+|.=+|..|++.+.+ |+++.|.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLR-----VALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCe-----EEEEecCCC
Confidence 3699999999999999999988754 999999865
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.034 Score=56.76 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=35.6
Q ss_pred chhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCc
Q 010421 325 GFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
.+.+.+.+.+++++.+. +.+++. ++ |.++||+++.+|.||.|.|....
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 44455666678888774 666653 33 56789988999999999998763
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0064 Score=64.26 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=31.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|.+.+|+||||+|.+|..+|..| .+.+|+|+|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 44678999999999999999999 999999999974
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.024 Score=57.56 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=37.1
Q ss_pred Cchhhhhc-cCeEEEEeCc-eeEEeCCc----EEEc-CCceeeccEEEEecCCCC
Q 010421 324 EGFFSEAE-KGKIVFKRAS-KWWFWKGG----LEFE-DNTKLEADVVILCTGYDG 371 (511)
Q Consensus 324 ~~~~~~l~-~g~v~v~~~~-i~~~~~~~----v~~~-dG~~~~~D~VI~aTG~~~ 371 (511)
..+.+.+. .++|+++.+. |+.++.++ ++++ ||+++++|+||-|-|...
T Consensus 108 ~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S 162 (387)
T COG0654 108 NALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS 162 (387)
T ss_pred HHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence 34455554 5679999875 77776544 7788 999999999999999876
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.019 Score=55.77 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=29.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|.|||+|++|+=.|..|.+... +-+|+++.+.|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~---~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHP---NAHVDIFEKLPV 56 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCC---CCeeEeeecCCc
Confidence 489999999999999999988522 235999998773
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.015 Score=55.51 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=75.0
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYL 83 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (511)
+-+|||||..+|.||-.| .|++|+|.=|+--+ ..| .+++.+.+
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L---------------------------------rGF--Dqdmae~v 244 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL---------------------------------RGF--DQDMAELV 244 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeec---------------------------------ccc--cHHHHHHH
Confidence 578999999999999999 88899998885211 222 46788888
Q ss_pred HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCCC
Q 010421 84 ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPA 163 (511)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~ 163 (511)
...++..|+ .+.-.+..++|++.+ +++.+|...+..+++.-+..||.|+.|.| ..+.+-+
T Consensus 245 ~~~m~~~Gi--kf~~~~vp~~Veq~~---------------~g~l~v~~k~t~t~~~~~~~ydTVl~AiG---R~~~~~~ 304 (503)
T KOG4716|consen 245 AEHMEERGI--KFLRKTVPERVEQID---------------DGKLRVFYKNTNTGEEGEEEYDTVLWAIG---RKALTDD 304 (503)
T ss_pred HHHHHHhCC--ceeecccceeeeecc---------------CCcEEEEeecccccccccchhhhhhhhhc---cccchhh
Confidence 888888887 555555567777642 56667777666555555678999999999 4455443
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.076 Score=55.28 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=28.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+.|+|||+|.+|+=.|..+++.+.+ |.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~-----V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFD-----VTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCe-----EEEEeCCC
Confidence 4699999999999999999887654 99998864
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.012 Score=65.03 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=32.3
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|+|||+|++|+.+|..|++.+.. ||++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-----Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-----VTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-----EEEEcccc
Confidence 5789999999999999999999998765 99998864
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.012 Score=60.56 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=29.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
-.|+|||+|.+|.=+|..|++.+.+ |.++.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~-----V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQ-----VLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCe-----EEEEEcCC
Confidence 3699999999999999999988765 99999975
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.024 Score=54.83 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+-+|..|++.+.+ |+++.|++.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~-----v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR-----VLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-----EEEEeccCC
Confidence 599999999999999999987654 999999863
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.06 Score=61.33 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=63.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
.++|+|||+|+.|+.+|..| .|. .|+|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------------------------------------~~--- 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------------------------------------SP--- 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------hH---
Confidence 46899999999999999999 775 47899875322 01
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+...+++.++ .++.++.|+++... +..-.|++.... +...++.+|.|+++.| ..|+
T Consensus 356 -~l~~~L~~~GV--~i~~~~~v~~i~g~----------------~~v~~V~l~~~~-g~~~~i~~D~V~va~G---~~Pn 412 (985)
T TIGR01372 356 -EARAEARELGI--EVLTGHVVAATEGG----------------KRVSGVAVARNG-GAGQRLEADALAVSGG---WTPV 412 (985)
T ss_pred -HHHHHHHHcCC--EEEcCCeEEEEecC----------------CcEEEEEEEecC-CceEEEECCEEEEcCC---cCch
Confidence 12334566777 88899999988751 111134454211 2223789999999999 4565
Q ss_pred C
Q 010421 161 I 161 (511)
Q Consensus 161 ~ 161 (511)
.
T Consensus 413 t 413 (985)
T TIGR01372 413 V 413 (985)
T ss_pred h
Confidence 4
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.033 Score=56.48 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=29.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|.-+|..|++.+.+ |+++.|.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~-----v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGAS-----VALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCe-----EEEEeCCCC
Confidence 4699999999999999999987654 999999764
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.023 Score=56.53 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=32.7
Q ss_pred chhhhhccCeEEEEeC-ceeEEe--CCc---EEEcCCceeeccEEEEecCCCCcc
Q 010421 325 GFFSEAEKGKIVFKRA-SKWWFW--KGG---LEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~-~i~~~~--~~~---v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
.+.+.+++-+++++.+ .|.++. +++ |.+++|+ +.+|.||+|+|.....
T Consensus 152 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 152 ALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred hhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 3445555567999988 587775 333 6678887 9999999999997653
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.03 Score=57.22 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=34.1
Q ss_pred chhhhhcc-CeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCC
Q 010421 325 GFFSEAEK-GKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 325 ~~~~~l~~-g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
.+++.+.+ ++|++..+. +++++. ++ |.++||+++.+|+||-|.|.+.
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 34444444 578887764 666643 33 6778999999999999999876
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.22 Score=53.19 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~ 34 (511)
.++|+|||+|..|+.+|..+ .+ .+++|+.+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 46899999999999998877 55 468888775
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.013 Score=61.29 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=30.5
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+++|+|||+|.+|+++|..|++.+.. |+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-----V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR-----VTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-----EEEEeCCc
Confidence 4678999999999999999999887754 99987654
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.3 Score=52.71 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=18.5
Q ss_pred CCeEEEECCCHHHHHHHHhc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL 23 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l 23 (511)
.++|+|||||..|+-+|..|
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l 437 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSM 437 (604)
T ss_pred CCcEEEECCchHHHHHHHHH
Confidence 36899999999999999998
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.037 Score=56.68 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=29.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||+|.+|+=+|..|++.+.- +|+++.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~----~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHL----NVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC----CEEEEecCCc
Confidence 699999999999999999987641 3999999875
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.021 Score=57.16 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=28.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||+|.+|.-+|..|++. .+ |+++.|.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~-----V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MK-----VIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CC-----EEEEECCCc
Confidence 599999999999999999887 54 999999874
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.034 Score=56.24 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=29.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|.=+|..|++.+.+ |+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~-----v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK-----IALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE-----EEEEeCCCc
Confidence 489999999999999999988765 999999874
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.045 Score=55.57 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=29.1
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|.-+|..|++.+.+ |+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~-----V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFS-----VAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCE-----EEEEcCCC
Confidence 4799999999999999999987654 99999875
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.039 Score=55.88 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=28.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||||.+|.=+|..|++.+.+ |+++.+.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~-----v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRS-----VAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc-----EEEEcCCC
Confidence 699999999999999999988765 99999875
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.017 Score=55.03 Aligned_cols=45 Identities=22% Similarity=0.472 Sum_probs=36.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC--CcCccccCCCcCce
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD--SIGGIWKSCSYNST 49 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~--~~GG~w~~~~~~~~ 49 (511)
..||+|||||.+||.||.+| .|.+|+|+|++. .+||+-.. .+-++
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfW-SfGGL 53 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFW-SFGGL 53 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeee-ecccE
Confidence 47999999999999999999 999999999854 47776444 34443
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.049 Score=57.21 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=30.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..|+|||+|.+|.-+|..|++.+.. |+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~-----v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVK-----TCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 3699999999999999999998765 999999864
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.009 Score=59.16 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=35.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
..+|++|||+|..||.+|..| .+.+|+++|++..+||.-..
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavt 55 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVT 55 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceee
Confidence 358999999999999999999 88999999999777775443
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.15 Score=52.23 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=34.1
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC----ceeec
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT----HWTVP 240 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~----~~~~p 240 (511)
..++|+|||+|.||.-.|..|.+.+.. ++++.|++ .|..+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~-----v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHE-----VVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCC-----ceEEEecCCccceEeec
Confidence 468999999999999999999998765 99999985 46554
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.79 Score=47.99 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=26.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~ 36 (511)
.++|+|||+|..|+.+|..+ .+ .+|+++|..+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 47899999999999987766 55 46999987654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.048 Score=55.58 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=30.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||||.+|.=+|..|++.+.. |+++.|.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~-----V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA-----VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-----EEEEecCCc
Confidence 6899999999999999999988765 999999864
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.045 Score=60.05 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=33.8
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.-.|++|+|||+|++|.-.|..|.+.++. |++..|+.+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~-----v~vyer~dr 1819 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHT-----VTVYERSDR 1819 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcE-----EEEEEecCC
Confidence 34789999999999999999999999876 999999864
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.041 Score=50.08 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=29.9
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
..+++|+|||||..|.-.+..|.+.+.. |+++.+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~-----V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAH-----IVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe-----EEEEcC
Confidence 6789999999999999999999988754 998865
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.018 Score=58.14 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=28.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+||+|||+|++|+++|..+ .|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5899999999999999999 889999999865
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.061 Score=54.65 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=28.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHh---cCCCCCCcEEEEEec
Q 010421 198 KKVAVVGFKKSAIDLAKECAES---NQGPEGQPCTMIVRT 234 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~---~~~~~~~~Vtl~~R~ 234 (511)
-+|+|||+|.+|.=+|..|++. +.. |+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~-----v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLP-----VALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCE-----EEEEeCC
Confidence 3699999999999999999987 654 9999995
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.035 Score=56.30 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=28.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
+|+|||+|++|.-+|..|++.+.+ |.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~-----V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE-----TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-----EEEEECC
Confidence 599999999999999999988764 9999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.032 Score=56.93 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=26.7
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
-.|+|||||..|+|.|...++.+.+ +.++.-.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~k-----tlLlT~~ 36 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAK-----TLLLTLN 36 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCe-----EEEEEcC
Confidence 4699999999999999999998865 6666554
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.061 Score=52.82 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=63.8
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCc-EEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNP-VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v-~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
++.|.|||.|+-|-..|..| .|.+| -||+.....+ .. -.
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~--------------------------------ki--LP 392 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME--------------------------------KI--LP 392 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh--------------------------------hh--hH
Confidence 46899999999999999988 23333 3554421110 00 11
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+-+.++-..-+++-|+ .++-|..|.++... .+...+.+.++. ++..|.||+|+|
T Consensus 393 eyls~wt~ekir~~GV--~V~pna~v~sv~~~----------------~~nl~lkL~dG~-----~l~tD~vVvavG--- 446 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGV--DVRPNAKVESVRKC----------------CKNLVLKLSDGS-----ELRTDLVVVAVG--- 446 (659)
T ss_pred HHHHHHHHHHHHhcCc--eeccchhhhhhhhh----------------ccceEEEecCCC-----eeeeeeEEEEec---
Confidence 1223333344556677 78889999888862 334457777776 899999999999
Q ss_pred CCCCC
Q 010421 157 DVPII 161 (511)
Q Consensus 157 ~~p~~ 161 (511)
..|+.
T Consensus 447 ~ePN~ 451 (659)
T KOG1346|consen 447 EEPNS 451 (659)
T ss_pred CCCch
Confidence 56765
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.12 Score=53.52 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCchhhhhccCeEEEEeCceeEE--eCCc----EEEcCCceeeccEEEEecCCCCc
Q 010421 323 PEGFFSEAEKGKIVFKRASKWWF--WKGG----LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 323 ~~~~~~~l~~g~v~v~~~~i~~~--~~~~----v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
..-+.+...+-+|+++.+.|..+ ++++ |++++|+++++|.+|=|||++..
T Consensus 157 d~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 33444555556799888886544 4444 67889999999999999999763
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.031 Score=58.38 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=29.9
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..|+|||+|.+|.=+|..|++.+.. |.++.|.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~-----V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN-----TVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC-----EEEEeCCCc
Confidence 3699999999999999999988765 999999864
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.017 Score=61.26 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=27.9
Q ss_pred eEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDS 36 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~ 36 (511)
|++|||||.+|+.+|.+| .+ ++|+|+|+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 799999999999999999 55 79999999753
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.022 Score=60.79 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~ 36 (511)
.+|++|||||.+|+.+|.+| .+.+|+|+|+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence 58999999999999999999 7789999999763
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.2 Score=48.30 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCCeEEEECCCHHHHHHHHhccCC--CcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.+||+|||+|-+|+.||.-|.|+ .|+++|=.+.+ ..+++
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------------------------------kAD~V- 394 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------------------------------KADAV- 394 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh-------------------------------------hhHHH-
Confidence 358999999999999999999654 68898865332 11222
Q ss_pred HHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 81 DYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 81 ~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
|++-... -++ .|..|..-+.|.-.. +..--+..++..+++.+.+.-+-|++-.|. .|
T Consensus 395 --Lq~kl~sl~Nv--~ii~na~Ttei~Gdg---------------~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL---~P 452 (520)
T COG3634 395 --LQDKLRSLPNV--TIITNAQTTEVKGDG---------------DKVTGLEYRDRVSGEEHHLELEGVFVQIGL---LP 452 (520)
T ss_pred --HHHHHhcCCCc--EEEecceeeEEecCC---------------ceecceEEEeccCCceeEEEeeeeEEEEec---cc
Confidence 2222222 233 566666666665421 111125566666677777888889999994 56
Q ss_pred CCC
Q 010421 160 IIP 162 (511)
Q Consensus 160 ~~p 162 (511)
+.-
T Consensus 453 NT~ 455 (520)
T COG3634 453 NTE 455 (520)
T ss_pred Chh
Confidence 653
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.1 Score=48.29 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.8
Q ss_pred eCCcEEEcCCceeeccEEEEecCCCCcc
Q 010421 346 WKGGLEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 346 ~~~~v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
++..|++++|.++.++-+++||||+|..
T Consensus 79 ~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 79 SEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred ccceEEecCCceeeEEEEEEecCCCcce
Confidence 3556999999999999999999999964
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.033 Score=59.30 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|.=+|..|++.+.+ |+++.|.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~-----v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVD-----SILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 35799999999999999999998765 999999863
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.026 Score=57.56 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=30.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|.=+|..|++.+.+ |+++.|++.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~-----v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLR-----VAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCE-----EEEEeCCCC
Confidence 4799999999999999999988764 999999875
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.084 Score=55.59 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=25.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|.+|.-.|..| ...+|++.-|+
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 57999999999999999999 44567777664
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.18 Score=51.38 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=61.7
Q ss_pred EEECCCHHHHHHH-H---hc---cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 8 AIIGAGVSGLAAV-K---QL---RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 8 ~IIGaG~aGl~aa-~---~l---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+|++-|.-|+..+ . .| .|.+|++++..+. ..++.++.
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp------------------------------------slpG~rL~ 262 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP------------------------------------SVPGLRLQ 262 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC------------------------------------CCchHHHH
Confidence 5677777777666 2 22 5889999987532 12234677
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+.+..++.+. .+..+++|.+++.. ++...+.... +++...+.+|.||+|||.+
T Consensus 263 ~aL~~~l~~~Gv--~I~~g~~V~~v~~~----------------~~~V~~v~~~--~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 263 NALRRAFERLGG--RIMPGDEVLGAEFE----------------GGRVTAVWTR--NHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHhCCC--EEEeCCEEEEEEEe----------------CCEEEEEEee--CCceEEEECCEEEEeCCCc
Confidence 788888877888 89999999999873 2222222222 2333478999999999954
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.14 Score=52.89 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=30.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||||++|.-+|..|++.+.. |.++.|.+.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~-----VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE-----TFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-----EEEEecCCC
Confidence 4799999999999999999988765 999999753
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.1 Score=53.10 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=29.3
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||+|++|.-+|..|++.+.+ |.++.|.+.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-----V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-----TFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-----EEEEecCCC
Confidence 699999999999999999988765 999998753
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.077 Score=48.71 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=28.8
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
.++++|+|||||..|..=+..|.+.++. ||++..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~-----VtVVap 56 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCY-----VYILSK 56 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCE-----EEEEcC
Confidence 5688999999999999988888887765 888854
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.15 Score=51.15 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=26.1
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
-.|+|||||..|+|.|.+.++.|+. .+++..+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~-----TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGAR-----TLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCc-----eEEeecc
Confidence 3699999999999999999998875 5555443
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.052 Score=55.85 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=25.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||||.+|+-.|..+++.+.+ |.|+.|.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~-----VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK-----VLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS------EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCE-----EEEEECCcc
Confidence 389999999999999999998865 999998763
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.053 Score=55.25 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=27.1
Q ss_pred EEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 201 AVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 201 ~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|||+|.+|+=.|..+++.+.. |+++.|.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~-----V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLS-----VLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCc-----EEEEecCcc
Confidence 5999999999999999987654 999999765
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.04 Score=56.66 Aligned_cols=34 Identities=21% Similarity=0.067 Sum_probs=29.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-.|+|||+|++|.=+|..|++.+.+ |.++.|.+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~-----VlliEr~~~ 39 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLD-----VLVIERGDS 39 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCe-----EEEEecCCC
Confidence 3699999999999999999988764 999999764
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.11 Score=55.28 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=30.7
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|.=+|..|++.+.. |+++.|.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~-----v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVR-----VLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 35799999999999999999988765 999999864
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.078 Score=56.47 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.1
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
...+|+|||+|.+|.=+|..|++.+.. |+++.|.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~-----v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP-----VVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc-----EEEEeCCCC
Confidence 345799999999999999999988765 999999864
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.18 Score=51.62 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=29.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||||.+|.=+|..|++.+.. |+++.|++.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE-----VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-----EEEEEcCCc
Confidence 699999999999999999988765 999999864
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.65 Score=48.91 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-.|+|||+|.+|+=.|..+++.+.+ |.++.+.+.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~-----VivlEK~~~ 95 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMN-----PVILEKMPV 95 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC-----EEEEECCCC
Confidence 3699999999999999999988765 999998764
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.043 Score=56.34 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.2
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+++|+|||+|+.|...|..|++.+.. ||++.|.+
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~-----Vtv~e~~~ 156 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHD-----VTVFERVA 156 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCe-----EEEeCCcC
Confidence 5679999999999999999999999875 99988865
|
|
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.053 Score=55.18 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=32.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|+..+||+|+|.|..-...|..| .|.+|+.+|+++..||.|..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 78889999999999998888888 99999999999999999886
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.24 Score=50.76 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=27.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+=.|..+++.+.+ |.++.+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~-----V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAK-----VLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT------EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCe-----EEEEEeecc
Confidence 389999999999999999998765 999999764
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.18 Score=49.92 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.9
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||||.+|.-.|..|.+.+-. |.++.++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~-----v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGID-----VVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCe-----EEEEeecc
Confidence 5799999999999999999998875 88887754
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.17 Score=51.01 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||||.+|.-+|..|++.+.+ |+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~-----v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIK-----TTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCe-----EEEecCCC
Confidence 599999999999999999988764 99999864
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.062 Score=56.14 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~ 37 (511)
..+|.+|||||.||...|.+| ...+|.++|+....
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 468999999999999999999 55899999997665
|
|
| >KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.083 Score=49.76 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=25.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc---------cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL---------RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l---------~g~~v~v~e~~ 34 (511)
+..+|+|||+|..||++|..+ +..+|+|++.+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 457999999999999999666 33578888765
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.64 Score=48.00 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhc-CCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESN-QGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~-~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+=.|..+++.+ .+ |+++.+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~-----V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAAN-----VVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcc-----EEEEecCCC
Confidence 4899999999999999999887 55 999998764
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.16 Score=53.90 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=65.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
..-+|||+|.-||.+|..| .|.++.|++-.+.+ +. ...+... ...
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l---------------------------Me---rQLD~~a---g~l 192 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL---------------------------ME---RQLDRTA---GRL 192 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH---------------------------HH---HhhhhHH---HHH
Confidence 4569999999999999999 89999999875432 00 0111122 244
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
|+...++.++ .+++++.++.+... +..-.+.+.++. .+.+|.||.|+|. .|+.
T Consensus 193 L~~~le~~Gi--~~~l~~~t~ei~g~----------------~~~~~vr~~DG~-----~i~ad~VV~a~GI---rPn~ 245 (793)
T COG1251 193 LRRKLEDLGI--KVLLEKNTEEIVGE----------------DKVEGVRFADGT-----EIPADLVVMAVGI---RPND 245 (793)
T ss_pred HHHHHHhhcc--eeecccchhhhhcC----------------cceeeEeecCCC-----cccceeEEEeccc---cccc
Confidence 5666677777 66676666555431 122246666665 7899999999995 4554
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.18 Score=51.41 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|||||.+|.-+|..|++.+.. .+.+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~-~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSAT-RALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCc-CCceEEEecCCC
Confidence 35799999999999999999987520 012599999975
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.089 Score=45.84 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=27.7
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|||||..|.++|..| .|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 589999999999999999 889999999963
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.092 Score=54.23 Aligned_cols=47 Identities=9% Similarity=0.156 Sum_probs=34.5
Q ss_pred hhhhhcc-C--eEEEEeCc-eeEEe---------CCc--EEEcCCceeeccEEEEecCCCCc
Q 010421 326 FFSEAEK-G--KIVFKRAS-KWWFW---------KGG--LEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 326 ~~~~l~~-g--~v~v~~~~-i~~~~---------~~~--v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+++.+.+ + +++++.+. +.+++ +++ |++.+|+++.+|.||-|-|-...
T Consensus 123 L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 123 LYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4454444 3 58888775 66664 223 67789999999999999999874
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.25 Score=49.76 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..++++|||||.+|++.|.+|++.|-+ |+++.+.|.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~-----v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFK-----VYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCe-----EEEEecCCc
Confidence 467999999999999999999999875 999999875
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.11 Score=41.51 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
+.++|+|||+|..|..-+..| .|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 357899999999999999999 88999999986
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.12 Score=47.86 Aligned_cols=32 Identities=38% Similarity=0.609 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
++++|||+|.-|...|..| .|++|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999 8899999999743
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.15 Score=49.51 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|.+.++|+|||+|.-|...|..| .|++|+++|++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 55668999999999999999999 899999999863
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.12 Score=52.19 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=31.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
++|+|||||..|+++|..|++.+.. |+++.+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~-----V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP-----VELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-----EEEEEccCcc
Confidence 5799999999999999999998765 9999987653
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.18 Score=46.04 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=28.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||||..|...+..| .|.+|+|+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47899999999999999999 89999999874
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.12 Score=37.85 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.6
Q ss_pred EECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 202 VVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 202 VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
|||+|.+|+-.|..|++.+. +|+++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-----~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-----RVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-----EEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-----cEEEEecCcc
Confidence 89999999999999999865 4999999864
|
... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.15 Score=43.92 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhh
Q 010421 200 VAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLS 279 (511)
Q Consensus 200 V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 279 (511)
|+|+|+|..|.=+|..|++.+.. |+++.|++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-----V~l~~r~~~------------------------------------------- 32 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-----VTLVSRSPR------------------------------------------- 32 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-----EEEEESHHH-------------------------------------------
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-----eEEEEcccc-------------------------------------------
Q ss_pred hhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEcCC--ce
Q 010421 280 PLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDN--TK 357 (511)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~dG--~~ 357 (511)
.+.+++..+++....-...........+- ..
T Consensus 33 -----------------------------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 33 -----------------------------------------------LEAIKEQGLTITGPDGDETVQPPIVISAPSADA 65 (151)
T ss_dssp -----------------------------------------------HHHHHHHCEEEEETTEEEEEEEEEEESSHGHHH
T ss_pred -----------------------------------------------HHhhhheeEEEEecccceecccccccCcchhcc
Q ss_pred eeccEEEEec
Q 010421 358 LEADVVILCT 367 (511)
Q Consensus 358 ~~~D~VI~aT 367 (511)
-++|+||+||
T Consensus 66 ~~~D~viv~v 75 (151)
T PF02558_consen 66 GPYDLVIVAV 75 (151)
T ss_dssp STESEEEE-S
T ss_pred CCCcEEEEEe
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.36 Score=49.15 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=29.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-.|+|||+|++|.-+|..|++.+.+ |.++.|...
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~-----VlvlEk~~~ 37 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLD-----VLVLEKGSE 37 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCe-----EEEEecCCC
Confidence 3699999999999999999998854 999999764
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.17 Score=45.11 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=25.6
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|||||..|...|..+ .|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 589999999999999888 999999999964
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.72 Score=44.32 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=32.1
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
+.|-|||+|..|-|.|..+++.+.. |.+..-+|.-..|.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~-----V~L~EMRp~k~Tpa 42 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVP-----VILYEMRPVKGTPA 42 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCc-----EEEEEcccccCCCc
Confidence 4699999999999999999999865 99887766544444
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.15 Score=51.74 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=30.3
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
+|+|||||.+|+++|..|++.+.. |+++.+++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~-----V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVP-----VILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc-----EEEEeccccc
Confidence 699999999999999999998765 9999987653
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.14 Score=48.89 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+...|-|||||.+|-.||.++ .|++|.++|.++.-
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 356799999999999999999 99999999987543
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.068 Score=42.83 Aligned_cols=36 Identities=33% Similarity=0.270 Sum_probs=29.3
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.++++|+|||+|..|..-+..|.+.+.+ |+++.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~-----v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAK-----VTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBE-----EEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCE-----EEEECCch
Confidence 5789999999999999999888887764 99987753
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.2 Score=49.04 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=31.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|++.++|.|||+|..|...|..| .|++|+++|++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 77778999999999999999999 889999999853
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.67 E-value=2.5 Score=45.35 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=27.7
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+=.|..+++.+.. .+|.++.+.+
T Consensus 5 DVlVIG~G~AGl~AAi~aa~~g~g---~~V~vleK~~ 38 (575)
T PRK05945 5 DVVIVGGGLAGCRAALEIKRLDPS---LDVAVVAKTH 38 (575)
T ss_pred cEEEECccHHHHHHHHHHHHhcCC---CcEEEEeccC
Confidence 599999999999999999876421 2599998864
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.89 Score=46.82 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=25.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+=.|..++ .+. +|.++.+.+.
T Consensus 6 DVvVVG~G~AGl~AA~~a~-~G~-----~V~lleK~~~ 37 (433)
T PRK06175 6 DVLIVGSGVAGLYSALNLR-KDL-----KILMVSKGKL 37 (433)
T ss_pred cEEEECchHHHHHHHHHhc-cCC-----CEEEEecCCC
Confidence 6999999999998888764 343 4999998764
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.4 Score=46.29 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=26.4
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+-.|..+++.+ . |+++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G-----~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQG-----R-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCC-----C-EEEEEccC
Confidence 5999999999999998888754 2 89998875
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.43 Score=48.25 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+...+.+.+.+ +. .+.++++|.+++.. ++.|.|.+.++. .+.+|+||+|+|.
T Consensus 133 dp~~~~~~l~~~~~~-G~--~i~~~~~V~~i~~~----------------~~~~~v~t~~g~-----~~~a~~vV~a~G~ 188 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RL--TLHFNTEITSLERD----------------GEGWQLLDANGE-----VIAASVVVLANGA 188 (381)
T ss_pred ChHHHHHHHHhccCC-Cc--EEEeCCEEEEEEEc----------------CCeEEEEeCCCC-----EEEcCEEEEcCCc
Confidence 445555556666666 66 78899999999872 445777766553 5899999999998
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
.+
T Consensus 189 ~~ 190 (381)
T TIGR03197 189 QA 190 (381)
T ss_pred cc
Confidence 73
|
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.23 Score=41.99 Aligned_cols=38 Identities=32% Similarity=0.323 Sum_probs=33.4
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..++++|+|||+|-+|--++..|+..+. ++|+++.|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~----~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGA----KEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTS----SEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCC----CEEEEEECCH
Confidence 4689999999999999999999999865 3699999975
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.21 Score=43.48 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=29.7
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEE
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIV 232 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~ 232 (511)
..+|++|+|||||..|...+..|.+.+.. |+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~-----V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF-----VTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCE-----EEEEc
Confidence 36899999999999999999999988765 99883
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.27 Score=42.71 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=27.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA 33 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~ 33 (511)
.++|+|||||..|..-+..| .|.+|+|+++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 47899999999999999998 8999999964
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.3 Score=41.16 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+.-.|+|||+|.-|.-.|.+|++.+.+ +-++.+-+
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~k-----illLeqf~ 40 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDK-----ILLLEQFP 40 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCe-----EEEEeccC
Confidence 445799999999999999999999864 77777654
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.2 Score=52.11 Aligned_cols=32 Identities=38% Similarity=0.467 Sum_probs=28.9
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
+|+|||+|.+|+++|+.| .|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 689999999999999999 99999999987543
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.23 E-value=3.1 Score=44.67 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=27.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+=.|..+++.+.. ..+|.++.+.+
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~--~~~V~lleK~~ 41 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGG--KLSVAVVSKTQ 41 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCC--CCcEEEEEccc
Confidence 599999999999999999887620 01499998865
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.27 Score=50.78 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=31.6
Q ss_pred hccCCCcEEEECCCCC-HHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 193 QLLKDKKVAVVGFKKS-AIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 193 ~~~~~k~V~VvG~G~s-g~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+.||+|+|-|||-| |-|++..+++.+. +++.++.|+.
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p----~~i~l~~~~E 285 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKFNP----KEIILFSRDE 285 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhcCC----CEEEEecCch
Confidence 3478999999986655 9999999998754 4799998874
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.23 Score=47.99 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.+|+|||+|.-|...|..+ .|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5899999999999999998 9999999999743
|
|
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.16 Score=51.88 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=27.0
Q ss_pred HHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 14 VSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 14 ~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.|||+||..| .|++|+|+|+++++||....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t 32 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRT 32 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-E
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEE
Confidence 5899999999 99999999999999997665
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.2 Score=44.97 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=25.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
++|+|||.|..||.+|..| .|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 3799999999999999999 9999999998764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.3 Score=47.50 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=31.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|...++|+|||+|.-|...|..| .|++|+++|++.
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 66667899999999999999999 899999999864
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.4 Score=45.75 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=28.0
Q ss_pred cEEEECCCCCHHHHHHHHHHh--cCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAES--NQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~--~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+=.|..+++. +. +|.++.+.+.
T Consensus 13 DVlVIG~G~AGl~AAi~Aae~~~G~-----~V~lieK~~~ 47 (608)
T PRK06854 13 DILIIGGGMAGCGAAFEAKEWAPDL-----KVLIVEKANI 47 (608)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCC-----eEEEEECCCc
Confidence 699999999999999999886 54 4999988753
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.33 Score=44.20 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..++|+|||||-.|...|..| .|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 357999999999999999998 88999999863
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 511 | ||||
| 2xlp_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 2e-13 | ||
| 2xls_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 2e-13 | ||
| 2vq7_A | 461 | Bacterial Flavin-Containing Monooxygenase In Comple | 3e-13 | ||
| 2xlr_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 3e-13 | ||
| 2xvi_A | 464 | Crystal Structure Of The Mutant Bacterial Flavin Co | 4e-13 | ||
| 2xve_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 6e-13 | ||
| 2xvf_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 2e-12 | ||
| 4ap3_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 1e-09 | ||
| 4ap1_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 1e-09 | ||
| 4aos_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 1e-09 | ||
| 3ucl_A | 573 | Cyclohexanone-Bound Crystal Structure Of Cyclohexan | 1e-09 | ||
| 3gwd_A | 540 | Closed Crystal Structure Of Cyclohexanone Monooxyge | 2e-09 | ||
| 2ylx_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 3e-09 | ||
| 2ylw_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 4e-09 | ||
| 2ylz_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 4e-09 | ||
| 1w4x_A | 542 | Phenylacetone Monooxygenase, A Baeyer-villiger Mono | 5e-09 | ||
| 1vqw_A | 457 | Crystal Structure Of A Protein With Similarity To F | 4e-05 | ||
| 2gv8_A | 447 | Crystal Structure Of Flavin-Containing Monooxygenas | 5e-05 | ||
| 1sez_A | 504 | Crystal Structure Of Protoporphyrinogen Ix Oxidase | 9e-04 |
| >pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461 | Back alignment and structure |
|
| >pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464 | Back alignment and structure |
|
| >pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573 | Back alignment and structure |
|
| >pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540 | Back alignment and structure |
|
| >pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542 | Back alignment and structure |
|
| >pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542 | Back alignment and structure |
|
| >pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542 | Back alignment and structure |
|
| >pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542 | Back alignment and structure |
|
| >pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457 | Back alignment and structure |
|
| >pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447 | Back alignment and structure |
|
| >pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase Length = 504 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 511 | |||
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 6e-56 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 1e-41 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 1e-18 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 2e-40 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 4e-13 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 4e-31 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 6e-26 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 4e-23 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 5e-23 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 7e-23 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 1e-22 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 3e-08 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 4e-08 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 6e-08 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 8e-08 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 9e-08 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 1e-07 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 1e-07 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 2e-07 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 2e-07 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 2e-07 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 3e-07 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 4e-07 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 7e-07 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 8e-07 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 8e-07 | |
| 3utf_A | 513 | UDP-galactopyranose mutase; nucleotide binding, fl | 8e-07 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 8e-07 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 1e-06 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 1e-06 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 2e-06 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 2e-06 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 2e-06 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 3e-06 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 6e-06 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 6e-06 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 6e-06 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 7e-06 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 8e-06 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 1e-05 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 3e-05 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 3e-05 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 3e-05 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 3e-05 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 5e-05 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 5e-05 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 7e-05 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 7e-05 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 8e-05 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 8e-05 | |
| 1yqz_A | 438 | Coenzyme A disulfide reductase; oxidoreductase; HE | 1e-04 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 3e-04 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 3e-04 |
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 6e-56
Identities = 73/409 (17%), Positives = 128/409 (31%), Gaps = 94/409 (22%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
+ +IG G SGL+A LR + V+ +A S GG W+ +++S L S +P
Sbjct: 6 VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWP 64
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124
P +P+ E+L YL Y + + + V +V V G
Sbjct: 65 MP-ASQGPYPARAEVLAYLAQYEQKYAL--PVLRPIRVQRVSHFGER------------- 108
Query: 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYC 184
V + +++ ++ TG +G+ P + G E F G LHS Y
Sbjct: 109 ---LRVVARDG-----RQWLARAVISATGTWGE-AYTPEYQ---GLESFAGIQLHSAHY- 155
Query: 185 KLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRI 244
A +VA++G S + E + + + + +
Sbjct: 156 ---STPAP--FAGMRVAIIGGGNSGAQILAEVSTV-----AETTWITQHEPAFLAD--DV 203
Query: 245 WGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304
G F + + G
Sbjct: 204 DGRVLF----------------------------------------ERATERWKAQQEGR 223
Query: 305 KPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVI 364
+PD P +M +G + F G+++ D T+ D VI
Sbjct: 224 EPDLPP----GGFGDIVMVPPVLDARARGVLAAVPPPA-RFSPTGMQWADGTERAFDAVI 278
Query: 365 LCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGY 413
CTG+ + + L L+ + G +P++ +GY
Sbjct: 279 WCTGF---RPALSHLKGLD--LVTPQGQVEVDGSGLRALAVPSVWLLGY 322
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 1e-41
Identities = 70/287 (24%), Positives = 108/287 (37%), Gaps = 57/287 (19%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--------HNPVVFEASDSIGGIWK--------------- 42
+IAI+GAG SG+A ++ + V FE GG W
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 63
Query: 43 SCSYNSTKLQSHRSDYEFTDFPWP---NRDDPGFPSYTEILDYLESYAKHFDVFKCVRFN 99
S Y + EF D+ + + +P + DY++ + V K +RFN
Sbjct: 64 SSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123
Query: 100 SKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159
+ V V F DS + V VQ H +++I F+++V CTG + P
Sbjct: 124 TAVRHVEFNE-----DSQ---------TFTVTVQDHTTDTIYSEEFDYVVCCTGHF-STP 168
Query: 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAES 219
+P F G E F G++LH+ D+ + KDK V +VG SA D+ +C
Sbjct: 169 YVPEFE---GFEKFGGRILHAHDFRDALE------FKDKTVLLVGSSYSAEDIGSQCY-- 217
Query: 220 NQGPEGQPCTMIVRTTHWTVPHY--RIWGLPFFMFYSTRFSQFLHGS 264
G + T + P + T + F GS
Sbjct: 218 ---KYGAKKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGS 261
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 1e-18
Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 3/148 (2%)
Query: 345 FWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPL 404
F D + + D +ILCTGY FL + + + + L LY+G +
Sbjct: 250 VDTENAYFADGSSEKVDAIILCTGY---IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWED 306
Query: 405 IPNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFY 464
P ++G + + + + ++ + +I + LPS E+M + E
Sbjct: 307 NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAE 366
Query: 465 KRHCISTFSINHSDEICEEMGWNAWRKR 492
+ + I + ++ + ++
Sbjct: 367 EMYTYQGDYIQNLIDMTDYPSFDIPATN 394
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 2e-40
Identities = 61/358 (17%), Positives = 104/358 (29%), Gaps = 80/358 (22%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLR----HHNPVVFEASDSIGGIWK-------------- 42
+ KIAIIGAG SGL K L +FE S GG+W
Sbjct: 3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPST 62
Query: 43 -------------------SCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYL 83
S Y + + + D + FP I +Y
Sbjct: 63 NPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFK-PQTLQFPHRHTIQEYQ 121
Query: 84 ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR- 142
YA+ ++ + V+++ W V + + S
Sbjct: 122 RIYAQPLL--PFIKLATDVLDIEKKDGS----------------WVVTYKGTKAGSPISK 163
Query: 143 YGFEFLVVCTGKYGDVPIIPAFPN-NKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVA 201
F+ + +C G Y +VP IP ++ + G VLHS + + + + V
Sbjct: 164 DIFDAVSICNGHY-EVPYIPNIKGLDEYAKAVPGSVLHSSLFREPEL------FVGESVL 216
Query: 202 VVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPF--FMFYSTRFSQ 259
VVG SA DL + P + + + + +P +TR
Sbjct: 217 VVGGASSANDLVRHLT-----PVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIY 271
Query: 260 FLHGSPNQSLLRTLLCL--------LLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHP 309
G ++ R + C + + + ++ P
Sbjct: 272 LKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDP 329
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 4e-13
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 12/135 (8%)
Query: 342 KWWFWKGGLEFEDNTKL--EADVVILCTGYDGKKKLKAFLPEPFQS-----LLEHPSGLL 394
+ + K+ D VI CTGY F L++ S +
Sbjct: 261 TKFDPTTREIYLKGGKVLSNIDRVIYCTGY---LYSVPFPSLAKLKSPETKLIDDGSHVH 317
Query: 395 PLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEM 454
+Y+ + P +AFVG V T++ ++ +L+R+ + KLPS E+ L+ + M
Sbjct: 318 NVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELM 377
Query: 455 EVMKQSTRFYKRHCI 469
+ + H +
Sbjct: 378 FSLSGANN--MYHSL 390
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 4e-31
Identities = 77/475 (16%), Positives = 143/475 (30%), Gaps = 81/475 (17%)
Query: 7 IAIIGAGVSGLAAVKQLRHHNP-------VVFEASDSIGGIWKSCS-YNSTKLQSH---- 54
+ +G G S +A L+ + + W + + ++LQ
Sbjct: 33 LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKD 90
Query: 55 -------RSDYEFTDF--------PWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFN 99
S Y F ++ + N +P E DYL A HF R+
Sbjct: 91 LVSLRNPTSPYSFVNYLHKHDRLVDFINLGTF-YPCRMEFNDYLRWVASHFQE--QSRYG 147
Query: 100 SKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159
+V+ + S AG + + LVV G P
Sbjct: 148 EEVLRIEPMLS------------AGQVEALRVISRNADGEELVRTTRALVVSPGG---TP 192
Query: 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAES 219
IP +G+V H Y + + K K+A++G +SA + + +S
Sbjct: 193 RIPQVF---RALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDS 249
Query: 220 NQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLS 279
+ MI+R + + F + +F+ ++ + R LL
Sbjct: 250 YPSVQ---ADMILRASALKPADDSPFVNEVF---APKFTDLIYSREHAERER-----LLR 298
Query: 280 PLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKR 339
+++ L+ ++ + Y K P F +
Sbjct: 299 EYHNTNYSVVDTDLIERIYGVFYRQKVSGI-------------PRHAFRCMTTVERATAT 345
Query: 340 ASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRG 399
A + + D VIL TGY+ ++ + L EP L
Sbjct: 346 AQGIELALRDAGSGELSVETYDAVILATGYE-RQLHRQLL-EPLAEYLGDHEIGRDYRLQ 403
Query: 400 TIHPLIPNMAFVGYIE-----SVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQ 449
T + G+ + S + L +R+ +S + K +A + L +
Sbjct: 404 TDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQHLKPGTAARALHE 458
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 65/460 (14%), Positives = 124/460 (26%), Gaps = 134/460 (29%)
Query: 7 IAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWK----------SCSYNSTKLQSH 54
+AIIGAG +G+ L+ V+ ++G +K ++
Sbjct: 7 VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPD 66
Query: 55 RSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETT 114
+ P + S +YL+ A H+++ + N+ V + +
Sbjct: 67 MNAISMDTSPAFT-FNEEHISGETYAEYLQVVANHYEL--NIFENTVVTNISADDAY--- 120
Query: 115 DSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFE 174
+ +A + + Y +++ V TG Y + P P
Sbjct: 121 -------------YTIAT------TTETYHADYIFVATGDY-NFPKKPFKY--------- 151
Query: 175 GQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234
+H + ++ + + V+G +S D A + A++ G + T
Sbjct: 152 --GIHYSEI----EDFDN--FNKGQYVVIGGNESGFDAAYQLAKN-----GSDIALYTST 198
Query: 235 THWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLL 294
T P S R S
Sbjct: 199 TGLNDPDAD---------PSVRLSP----------------------------------- 214
Query: 295 WKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFED 354
+ L +K E + I F G
Sbjct: 215 YTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYH-------------ISFDSGQ----- 256
Query: 355 NTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYI 414
+ IL TG+D + Q L + + L PN+ +G
Sbjct: 257 -SVHTPHEPILATGFDA--TKNPIV----QQLFVTTNQDIKLTTHDESTRYPNIFMIGAT 309
Query: 415 ESVSNLHTA-----ELRSIWLSRLIDDKFKLPSAEKMLEQ 449
N R L+ L+ + LP+ ++++E
Sbjct: 310 VENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIEN 349
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-23
Identities = 56/256 (21%), Positives = 100/256 (39%), Gaps = 70/256 (27%)
Query: 6 KIAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGGIWKSCSYNST------KLQSHRSD 57
+ ++GAG++GL A+ + R FEA+ +GG+W Y + ++S D
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVW----YWNRYPGARCDVESI--D 76
Query: 58 YEFT-------DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGS 110
Y ++ ++ W + + + EIL YLE A FD+ + +RF+++V
Sbjct: 77 YSYSFSPELEQEWNWSEK----YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVL--- 129
Query: 111 LETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGP 170
D G W V FLVV G PAF G
Sbjct: 130 ----DEEGLR-------WTVRTDRG-----DEVSARFLVVAAGPLS-NANTPAFD---GL 169
Query: 171 EVFEGQVLHSI--DYCKLDKEAASQLLKDKKVAVVGFKKSAI----DLAKECAESNQGPE 224
+ F G ++H+ + +D K+V V+G S I +A++ +
Sbjct: 170 DRFTGDIVHTARWPHDGVD-------FTGKRVGVIGTGSSGIQSIPIIAEQAEQ------ 216
Query: 225 GQPCTMIVRTTHWTVP 240
+ R+ ++++P
Sbjct: 217 ---LFVFQRSANYSIP 229
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-23
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 70/256 (27%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNP--VVFEASDSIGGIWKSCSYNST------KLQSHRSD 57
+ ++GAG SGL A+ +LR V E + +GG+W Y + ++S +
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW----YWNRYPGARCDIESI--E 71
Query: 58 YEFT-------DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGS 110
Y ++ ++ W R + S EIL Y+ A FD+ + F++ V F
Sbjct: 72 YCYSFSEEVLQEWNWTER----YASQPEILRYINFVADKFDLRSGITFHTTVTAAAF--- 124
Query: 111 LETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGP 170
D N W V R +L++ +G VP +P FP G
Sbjct: 125 ----DEATNT-------WTVDTNHG-----DRIRARYLIMASG-QLSVPQLPNFP---GL 164
Query: 171 EVFEGQVLHSI--DYCKLDKEAASQLLKDKKVAVVGFKKSAI----DLAKECAESNQGPE 224
+ F G + H+ + +D ++V V+G S I +AK+ AE
Sbjct: 165 KDFAGNLYHTGNWPHEPVD-------FSGQRVGVIGTGSSGIQVSPQIAKQAAE------ 211
Query: 225 GQPCTMIVRTTHWTVP 240
+ RT H+ VP
Sbjct: 212 ---LFVFQRTPHFAVP 224
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-23
Identities = 59/261 (22%), Positives = 92/261 (35%), Gaps = 80/261 (30%)
Query: 6 KIAIIGAGVSGLAAVKQLRH---HNPVVFEASDSIGGIWKSCSYNST------KLQSHRS 56
+IGAG G+ AV +L H V F+ +D GG W Y + +SH
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTW----YWNRYPGALSDTESH-- 63
Query: 57 DYEFT-------DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTG 109
Y F+ + W + + EIL+YLE FD+ + +F ++V +
Sbjct: 64 LYRFSFDRDLLQESTWKTT----YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALY-- 117
Query: 110 SLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKG 169
NL WEV + Y +++V G P P G
Sbjct: 118 -----LDDENL-------WEVTTDHG-----EVYRAKYVVNAVG-LLSAINFPNLP---G 156
Query: 170 PEVFEGQVLHS------IDYCKLDKEAASQLLKDKKVAVVGFKKSAI----DLAKECAES 219
+ FEG+ +H+ L ++V V+G + LA E
Sbjct: 157 LDTFEGETIHTAAWPEGKS------------LAGRRVGVIGTGSTGQQVITSLAPEVEH- 203
Query: 220 NQGPEGQPCTMIVRTTHWTVP 240
T+ VRT ++VP
Sbjct: 204 --------LTVFVRTPQYSVP 216
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 56/268 (20%), Positives = 90/268 (33%), Gaps = 73/268 (27%)
Query: 1 MANYS-----KIAIIGAGVSGLAAVKQLRHHNP--VVFEASDSIGGIWKSCSYNST---- 49
M+N + +IGAGV+G+ + + EA + +GG W Y +
Sbjct: 1 MSNRAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTW----YWNRYPGC 56
Query: 50 --KLQSHRSDYEFT-------DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNS 100
+S+ Y + ++ W F S E+L Y+ A DV K RFN+
Sbjct: 57 RLDTESY--AYGYFALKGIIPEWEWSEN----FASQPEMLRYVNRAADAMDVRKHYRFNT 110
Query: 101 KVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160
+V R+ L WEV + + FL+ TG
Sbjct: 111 RVTAARY-------VENDRL-------WEVTLDNE-----EVVTCRFLISATG-PLSASR 150
Query: 161 IPAFPNNKGPEVFEGQVLHS----IDYCKLDKEAASQLLKDKKVAVVGFKKSAI----DL 212
+P G + F+G+ HS D K+V V+G + +
Sbjct: 151 MPDIK---GIDSFKGESFHSSRWPTDAEGAP---KGVDFTGKRVGVIGTGATGVQIIPIA 204
Query: 213 AKECAESNQGPEGQPCTMIVRTTHWTVP 240
A+ E + RT +W P
Sbjct: 205 AETAKE---------LYVFQRTPNWCTP 223
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 25/91 (27%)
Query: 1 MANYSKIAIIGAGVSGLAA----VKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRS 56
M++ ++ I+G G++GLAA + N + EA + +GG K+ ++R
Sbjct: 2 MSSK-RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG----------KVATYRE 50
Query: 57 DYEFTDFPW---PNRDDPGFPSYTEILDYLE 84
D F P+ + D +E
Sbjct: 51 D----GFTIERGPDS---YVARKHILTDLIE 74
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 78/531 (14%), Positives = 155/531 (29%), Gaps = 147/531 (27%)
Query: 54 HRSDYEFTDFPWPNRDDPGFPSYTEIL-DYLESYAKHFDVFKCVRFNSKVV---EVRFTG 109
H D+E + + +D IL + +++ +FD ++ E+
Sbjct: 5 HHMDFETGEHQYQYKD---------ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII 55
Query: 110 SLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY-------GFEFLVVCTGKYGDVPIIP 162
+ SG L W + + +Q++ ++FL+ P
Sbjct: 56 MSKDAVSGTLRL-----FW--TLLSKQEEMVQKFVEEVLRINYKFLM---SPIKTEQRQP 105
Query: 163 AFP-----------NNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAV---VGFKKS 208
+ N + V Y KL ++A +L K V + +G K+
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKT 164
Query: 209 AIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQS 268
+A + S C M F +F+ SP +
Sbjct: 165 W--VALDVCLS----YKVQCKM-----------------DFKIFWLN-LKN--CNSPE-T 197
Query: 269 LLRTL--LCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGF 326
+L L L + P S + L ++ ++ L+ + Y +C
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELR-RLLKSKPYENCL-------- 247
Query: 327 FSEAEKGKIVFKRASKWWFWKGGLEFEDNTKL--------EADVVILCTGYD--GKKKLK 376
+V W F + K+ D + T
Sbjct: 248 --------LVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 377 AFLPEPFQSL----LEHPSGLLPLYRGTIHPLIPNM---------------------AFV 411
P+ +SL L+ LP T +P ++
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 412 GYIE-SVSNLHTAELRSIWLSRLI-DDKFKLPSAEKMLE---QTSKEMEVMKQSTRFYKR 466
IE S++ L AE R ++ + +P +L + +VM + +K
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 467 HCI------STFSIN--HSDEICEEMGWNAWRKRNWLLEAFSPYGSKDYED 509
+ ST SI + + + A + +++ ++ + D +D
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDSDD 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 79/528 (14%), Positives = 157/528 (29%), Gaps = 134/528 (25%)
Query: 40 IWKSCSYNSTKLQSHRSDYEFTDFPW---PNRDDPGFPS-----YTEILDYL----ESYA 87
W S +Q + ++ + P + + PS Y E D L + +A
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 88 KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLL---PAGHPVWEVAVQTHNSNSIQRYG 144
K+ V +++R +L N+L G VA+ S +Q
Sbjct: 128 KYN-----VSRLQPYLKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-K 179
Query: 145 FEFLV--VCTGKYGDVPIIPAFPNN---KGPEVFEGQVLHSIDYCKLDKEAA----SQLL 195
+F + + + + + + HS + KL + +LL
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLL 238
Query: 196 KDKKVAVVGFKKSAIDLA----KECAES-NQGPEGQPCTMIVRT--------------TH 236
K K ++ + L + + N C +++ T TH
Sbjct: 239 KSKP-----YENCLLVLLNVQNAKAWNAFNLS-----CKILLTTRFKQVTDFLSAATTTH 288
Query: 237 WTVPHYRIWGLPFFMFYSTR-FSQFLHGSPNQSLLRTLLC----LLLS----PLRRGVS- 286
++ H+ + ++L P L + LS +R G++
Sbjct: 289 ISLDHHS---MTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 287 -KFIESYLLWKLP-LLKYGLKPDHPFE--EDYASCQMAIMPEGFFSEAEKGKIVFKRASK 342
+ KL +++ L P E + + ++ P I S
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSA-------HIPTILLSL 394
Query: 343 WWFWKGGLEFEDNTKLEADVVILCTGY----DGKKKLKAFLPEPFQSLLEHPSGLLPLYR 398
W + D VV Y K+ +P + L L+R
Sbjct: 395 IW---FDVIKSD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 399 GTI-----------HPLIPNMA------FVGY-IESVSNLH-TAELRSIWLSRLIDDKF- 438
+ LIP +G+ ++++ + R ++L D +F
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL----DFRFL 503
Query: 439 --KLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSDEICEEM 484
K+ + + ++Q +FYK + I +D E +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQ-LKFYKPY------ICDNDPKYERL 544
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLR---HHNPVVFEASDSIGG 39
++ S+IAIIGAG +GLAA L H+ + E +D +GG
Sbjct: 3 ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 42/247 (17%), Positives = 72/247 (29%), Gaps = 71/247 (28%)
Query: 6 KIAIIGAGVSGLAA--VKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDF 63
++ ++GAG SGL A +R ++ V+ EA +GG S
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV-----TQESALPGLSA------ 441
Query: 64 PWPNRDDPGFPSYTEILDYLESY-AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLP 122
+ + +Y E+ A+ +V + S +
Sbjct: 442 ------------WGRVKEYREAVLAELPNVE--IYRESPM-------------------- 467
Query: 123 AGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSID 182
+ I +GFE ++ TG + F P QVL D
Sbjct: 468 -------------TGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDD 514
Query: 183 YCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAE--SNQGPEGQPCTMIVRTTHWTVP 240
KKV V + AE + +G E T + + WT
Sbjct: 515 LFAGRLPDG------KKVVVYDDDHYYLGG--VVAELLAQKGYEVSIVTPGAQVSSWTNN 566
Query: 241 HYRIWGL 247
+ + +
Sbjct: 567 TFEVNRI 573
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 26/96 (27%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG-IWKSCSYNSTKLQSHRSDYEFTD 62
+ ++G G +GL + +L+ + V EA GG +W + R E TD
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVW-----------TARGGSEETD 61
Query: 63 ---------FPWPNRDDPG---FPSYTEILDYLESY 86
F + + G P LDY
Sbjct: 62 LSGETQKCTFSEGHFYNVGATRIPQSHITLDYCREL 97
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 8e-08
Identities = 41/244 (16%), Positives = 76/244 (31%), Gaps = 83/244 (34%)
Query: 7 IAIIGAGVSGLAAVKQ--LRHHNPVVFEASDSIGG----------IWKSCSYNSTKLQSH 54
+ IIG G +G+ A Q + + + + E+ +GG I+
Sbjct: 17 LTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIY------------- 63
Query: 55 RSDYEFTDFPWPNRDDPGFPSYT--EILDYLESYAKHFDVFKCVRFNSKVVEVRFT--GS 110
D GFP ++++ L + A+ ++ V N V + G+
Sbjct: 64 --DV------------AGFPEVPAIDLVESLWAQAERYNP--DVVLNETVTKYTKLDDGT 107
Query: 111 LE-TTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKG 169
E T++G + S ++ ++ G P P
Sbjct: 108 FETRTNTG---------------NVYRSRAV--------LIAAGLGAFEPR--KLPQLGN 142
Query: 170 PEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCT 229
+ G ++ Y E K K+V +VG SA+D T
Sbjct: 143 IDHLTGSSVY---YAVKSVED----FKGKRVVIVGGGDSALDWTVGLI-----KNAASVT 190
Query: 230 MIVR 233
++ R
Sbjct: 191 LVHR 194
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 9e-08
Identities = 29/211 (13%), Positives = 64/211 (30%), Gaps = 52/211 (24%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRS 56
M+ + +IGA G A + + +P + + + I SY + + S
Sbjct: 1 MSL-KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI-------SYGGCGIPYYVS 52
Query: 57 DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDS 116
E ++ + + ++ E + + DV ++ + D
Sbjct: 53 G-EVSN-----IESL-QATPYNVVRDPEFFRINKDV--EALVETRAHAI---------D- 93
Query: 117 GGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQ 176
A H V ++ + + ++ LV+ G P V
Sbjct: 94 -----RAAH---TVEIENLRTGERRTLKYDKLVLALGS---KANRPPVEGMDLAGVT--- 139
Query: 177 VLHSIDYCKLDKEAASQLLKD---KKVAVVG 204
+ ++D + E + K +VG
Sbjct: 140 PVTNLD----EAEFVQHAISAGEVSKAVIVG 166
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 20/86 (23%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT 61
+ ++G G+SGLAA L V+ E+S+ +GG ++S R
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG----------WIRSVRGP---N 50
Query: 62 DFPW---PNRDDPGFPSYTEILDYLE 84
+ P P L +
Sbjct: 51 GAIFELGPRGIRPAGALGARTLLLVS 76
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 59/366 (16%), Positives = 102/366 (27%), Gaps = 116/366 (31%)
Query: 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDF 63
+A++GAG +GLA R H +F+A IGG + N K + ++
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF-----NIAKQIPGKEEFY---- 425
Query: 64 PWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPA 123
E L Y + V ++ N V
Sbjct: 426 --------------ETLRYYRRMIEVTGVT--LKLNHTV--------------------- 448
Query: 124 GHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDY 183
++ +Q F+ ++ +G VP P P +VL +D
Sbjct: 449 ------------TADQLQ--AFDETILASGI---VPRTPPIDGIDHP-----KVLSYLDV 486
Query: 184 CKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYR 243
+ KVA++G D A ++ G T+
Sbjct: 487 LRDKAPVG------NKVAIIGCGGIGFDTAMYLSQ--PGES---------TSQNIAGFCN 529
Query: 244 IWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYG 303
WG+ + + S P +L S +G+ K LL G
Sbjct: 530 EWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTT--LLSRG 587
Query: 304 LKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVV 363
+K ++P + + + + G L D V
Sbjct: 588 VK---------------MIPGVSYQKIDDDGLHVV--------INGETQV----LAVDNV 620
Query: 364 ILCTGY 369
++C G
Sbjct: 621 VICAGQ 626
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLR--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDY 58
++ ++A+IGAGVSGLAA +L+ N VFEA GG KL+S D
Sbjct: 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG----------KLRSVSQD- 58
Query: 59 EFTDFPW---PNRDDPGFPSYTEILDYLE 84
W N S ++ ++
Sbjct: 59 ---GLIWDEGANT---MTESEGDVTFLID 81
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG-IW 41
M+N + ++G G+SG+AA K L N VV EA D +GG +
Sbjct: 1 MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY 44
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
+ I+GAG++GL+A L H V EAS+ GG
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 29/96 (30%)
Query: 1 MANYSK-IAIIGAGVSGLAAVKQLRH--------HNPVVFEASDSIGGIWKSCSYNSTKL 51
M++ K + IIG G++GLAA + + EAS +GG K+
Sbjct: 1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG----------KI 50
Query: 52 QSHRSDYEFTDFPW---PNRDDPGFPSYTEILDYLE 84
Q+ + D + P+ ++
Sbjct: 51 QTVKKD----GYIIERGPDS---FLERKKSAPQLVK 79
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-07
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 19/83 (22%)
Query: 6 KIAIIGAGVSGLAAVKQLR--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDF 63
+A++G G+SGLA LR + V+ E+S +GG + +H +
Sbjct: 18 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG----------AVGTHALA----GY 63
Query: 64 PW---PNRDDPGFPSYTEILDYL 83
PN P+ + L
Sbjct: 64 LVEQGPNSFLDREPATRALAAAL 86
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG-IW 41
+AI+GAG SGLAA LR + V EA D +GG W
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW 45
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
+ +IGAG +GLAA ++LR + V++ D +GG
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 54/204 (26%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT 61
K+ ++G +G AVKQ +P +E +D+I S+ S + + E
Sbjct: 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI-------SFLSCGIALYLGK-EI- 52
Query: 62 DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLL 121
N D G + E + V+ +V V D
Sbjct: 53 ----KNNDPRGLFYSSP-----EELSN-LGA--NVQMRHQVTNV---------D------ 85
Query: 122 PAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSI 181
P + V+ +N + ++ L++ TG P +P P V+ + +
Sbjct: 86 PETK---TIKVKDLITNEEKTEAYDKLIMTTGS---KPTVPPIPGIDSSRVY---LCKNY 136
Query: 182 DYCKLDKEAASQLLKD-KKVAVVG 204
+ D + + K + ++G
Sbjct: 137 N----DAKKLFEEAPKAKTITIIG 156
|
| >3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 8e-07
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 22/103 (21%)
Query: 6 KIAIIGAGVSGLAA---VKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTD 62
+ +IGAG +GL A + Q+ + ++ +++++ GG+ +D
Sbjct: 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGL-------------ASTDVTPEG 58
Query: 63 FPW---PNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKV 102
F + + F Y D L+ D + + S V
Sbjct: 59 FLYDVGGHV---IFSHYKYFDDCLDEALPKEDDWYTHQRISYV 98
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 43/232 (18%), Positives = 69/232 (29%), Gaps = 86/232 (37%)
Query: 7 IAIIGAGVSGLAAVKQ--LRHHNPVVFEASDSIGG----------IWKSCSYNSTKLQSH 54
I IIG G GL +R + + E+ +GG I+
Sbjct: 10 ITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIY------------- 56
Query: 55 RSDYEFTDFPWPNRDDPGFPSYT--EILDYLESYAKHFDVFKCVRFNSKVVEVRFT--GS 110
D GFP E+++ L+ FD + V V G
Sbjct: 57 --DV------------AGFPKIRAQELINNLKEQMAKFDQ--TICLEQAVESVEKQADGV 100
Query: 111 LETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAF----PN 166
+ + TH S ++ ++ G AF
Sbjct: 101 FKLVTNEE---------------THYSKTV--------IITAG-------NGAFKPRKLE 130
Query: 167 NKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAE 218
+ E +EG+ LH Y D + ++VA++G SA+D A
Sbjct: 131 LENAEQYEGKNLH---YFVDDLQ----KFAGRRVAILGGGDSAVDWALMLEP 175
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 26/206 (12%), Positives = 51/206 (24%), Gaps = 68/206 (33%)
Query: 6 KIAIIGAGVSGLAA--VKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDF 63
+ I+GAG SG A V + + + ++ IGG N +
Sbjct: 391 SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL-----NQVAALPGLGE------ 439
Query: 64 PWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPA 123
++ DY E+ +K ++ T D
Sbjct: 440 ------------WSYHRDYRETQITKLLK------KNKESQLALGQKPMTAD-------- 473
Query: 124 GHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEV-----FEGQVL 178
+ +YG + +++ TG + L
Sbjct: 474 ---------------DVLQYGADKVIIATGA---RWNTDGTNCLTHDPIPGADASLPDQL 515
Query: 179 HSIDYCKLDKEAASQLLKDKKVAVVG 204
K+ K+V ++
Sbjct: 516 TPEQVMDGKKKIG------KRVVILN 535
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 6 KIAIIGAGVSGLAAVKQLRH---HNPVVFEASDSIGG 39
++ ++GAG+SG++A K+L + ++ EA+D IGG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 86/232 (37%)
Query: 7 IAIIGAGVSGLAAVKQ--LRHHNPVVFEASDSIGG----------IWKSCSYNSTKLQSH 54
+ I+GAG +GL A +R + + GG I+
Sbjct: 8 VLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIY------------- 54
Query: 55 RSDYEFTDFPWPNRDDPGFPSYT--EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGS-- 110
D GFP +++ L F+ + + G
Sbjct: 55 --DV------------AGFPKVYAKDLVKGLVEQVAPFNP--VYSLGERAETLEREGDLF 98
Query: 111 LETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAF----PN 166
TT G + + ++ ++ G + AF
Sbjct: 99 KVTTSQG---------------NAYTAKAV--------IIAAG-------VGAFEPRRIG 128
Query: 167 NKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAE 218
G FEG+ ++ Y K + K+V +VG SA+D A +
Sbjct: 129 APGEREFEGRGVY---YAVKSKAE----FQGKRVLIVGGGDSAVDWALNLLD 173
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 2e-06
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEA-SDSIGG 39
+I I+GAG++GL A L H+ + EA ++ +GG
Sbjct: 46 RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG 82
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
++G G SGL A + L + ++ E + +GG
Sbjct: 4 AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGG 38
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 44/207 (21%), Positives = 69/207 (33%), Gaps = 57/207 (27%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEF 60
KI IIG G +A + R + ++FE + + S+ + L H S E
Sbjct: 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV-------SFANCGLPYHISG-EI 53
Query: 61 TDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNL 120
R T ES+ F+V VR +VV + D
Sbjct: 54 AQ-----RSA--LVLQTP-----ESFKARFNV--EVRVKHEVVAI---------D----- 85
Query: 121 LPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHS 180
A V V+ S + ++ L++ G PI+P P P L +
Sbjct: 86 -RAAK---LVTVRRLLDGSEYQESYDTLLLSPGA---APIVPPIPGVDNPLTH---SLRN 135
Query: 181 IDYCKLDKEAASQLLKD---KKVAVVG 204
I D + Q ++ + VVG
Sbjct: 136 IP----DMDRILQTIQMNNVEHATVVG 158
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 6e-06
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 6 KIAIIGAGVSGLAAVKQLRH---HNPVVFEASDSIGG 39
K+ IIGAG++GL A L + +V EA D +GG
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 29/206 (14%), Positives = 64/206 (31%), Gaps = 57/206 (27%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT 61
IIG +G++A Q+ ++ V E + SY L S
Sbjct: 38 NYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY-------SYAQCGLPYVISG-AIA 89
Query: 62 DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLL 121
+ + +++ + + + +V +V D
Sbjct: 90 S-----TEK--LIARNV-----KTFRDKYGI--DAKVRHEVTKV---------D------ 120
Query: 122 PAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSI 181
V + + + + ++ L++ TG P++P + V +L +I
Sbjct: 121 TEKK---IVYAEHTKTKDVFEFSYDRLLIATGV---RPVMPEWEGRDLQGVH---LLKTI 171
Query: 182 DYCKLDKEAASQLLKD---KKVAVVG 204
D E + L+ + V ++G
Sbjct: 172 P----DAERILKTLETNKVEDVTIIG 193
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 58/207 (28%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT 61
KI ++G G + +LR + ++ E + I S+ + L + T
Sbjct: 38 KIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI-------SFANCGLPYYIGG-VIT 89
Query: 62 DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLL 121
+ R T E +K F++ +R S+VV++ +
Sbjct: 90 E-----RQK--LLVQTV-----ERMSKRFNL--DIRVLSEVVKI---------N------ 120
Query: 122 PAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPE-VFEGQVLHS 180
+ ++ +N ++ L++ G PI+P+ P + + +F L +
Sbjct: 121 KEEK---TITIKNVTTNETYNEAYDVLILSPGA---KPIVPSIPGIEEAKALF---TLRN 171
Query: 181 IDYCKLDKEAASQLLKD---KKVAVVG 204
+ D + + + + V+G
Sbjct: 172 VP----DTDRIKAYIDEKKPRHATVIG 194
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 8e-06
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
+ +IG G GL A + L ++ EA D IGG
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 22/99 (22%)
Query: 6 KIAIIGAGVSGLAAVKQLR---HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTD 62
KI IIGAG +GL A +L + N ++E +D+ GG+ RS +
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGL-------------SRSFLDENG 57
Query: 63 FPW---PNRDDPGFPSYTEILDYLESYAKHFDVFKCVRF 98
F W + F Y D ++ + ++V + +
Sbjct: 58 FTWDLGGHV---IFSHYQYFDDVMDWAVQGWNVLQRESW 93
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 3e-05
Identities = 33/209 (15%), Positives = 68/209 (32%), Gaps = 64/209 (30%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT 61
K+ ++G+ G AV++L + +P +E D I S+ S +Q + +
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI-------SFLSAGMQLYLEG-KVK 53
Query: 62 DFPWPNRDDPGFPSYTEILDYL--ESY-AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGG 118
D + + Y+ E ++ +V N+++ +
Sbjct: 54 D-----VNS---------VRYMTGEKMESRGVNV----FSNTEITAI---------Q--- 83
Query: 119 NLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVL 178
P H +V V+ S + ++ L++ G VP P ++ ++
Sbjct: 84 ---PKEH---QVTVKDLVSGEERVENYDKLIISPGA---VPFELDIPGKDLDNIY---LM 131
Query: 179 HSIDYCKLDKEAASQLLKD---KKVAVVG 204
Q D V V+G
Sbjct: 132 RGRQ----WAIKLKQKTVDPEVNNVVVIG 156
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 62/206 (30%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFT 61
KI IIGA +G++A R P + + ++ Y S L ++ +
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV-------GYLSGGLSAYFNH-TIN 55
Query: 62 DFPWPNRDDPGFPSYTEILDYL--ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGN 119
+ + Y+ E + + + N +VV + D
Sbjct: 56 E-----LHE---------ARYITEEELRR-QKI--QLLLNREVVAM---------D---- 85
Query: 120 LLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLH 179
+A Y + L++ TG ++ ++
Sbjct: 86 --VENQ---LIAWTRKEEQQWYSY--DKLILATGA---SQFSTQIRGSQTEKLL---KYK 132
Query: 180 SIDYCKLDKEAASQLLKD-KKVAVVG 204
+ AA LL++ + VAV+G
Sbjct: 133 FLS----GALAAVPLLENSQTVAVIG 154
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 3e-05
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 5 SKIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 5 SKIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 108 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 28/138 (20%), Positives = 40/138 (28%), Gaps = 39/138 (28%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIG----GIWKSCSYNSTK--------- 50
K +IGAG+ GL+A L+ + V+EA I I S N K
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAI--SVWPNGVKCMAHLGMGD 82
Query: 51 -------------LQSHRSDYEFTDFPW-PNRDDPGFPSYT----EILDYLESYAKHFDV 92
+ RS T F P + G E+ + Y
Sbjct: 83 IMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--- 139
Query: 93 FKCVRFNSKVVEVRFTGS 110
V+F +V
Sbjct: 140 -DSVQFGKRVTRCEEDAD 156
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 6 KIAIIGAGVSGLAAVKQLR---HHNPVVFEASDSIGG 39
KIA++GAG + ++ L + + +FE + +GG
Sbjct: 189 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 7e-05
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGG-IWKSCSYNSTKLQSHRSDYE 59
+ I I+GAG GL+A L P + EA + GG W S + +D
Sbjct: 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVF 139
Query: 60 FTDFPWPNRDDPGF 73
+ P D+ +
Sbjct: 140 LDEVGVPYEDEGDY 153
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 36/147 (24%)
Query: 1 MANYS-------KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIG----GIWKSCSYN 47
MAN + + + G G +GL A L+ + + E S + GI +N
Sbjct: 1 MANVNKTPGKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGI--YLWHN 58
Query: 48 STKL------------QSHRSD---YEFTDFPWPNRDDPGFPSYT----EILDYLESYAK 88
++ SH + G P + D L + A+
Sbjct: 59 GLRVLEGLGALDDVLQGSHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRAR 118
Query: 89 HFDVFKCVRFNSKVVEVRFTGSLETTD 115
V + NS+ V G L
Sbjct: 119 ALGV--DISVNSEAVAADPVGRLTLQT 143
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 8e-05
Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 65/212 (30%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRS 56
M+ K+ IIG G +G++A +++ P VFEA++ + S+ +
Sbjct: 1 MSL-KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV-------SHAPCGIPYVVE 52
Query: 57 DYEFTDFPWPNRDDPGFPSYTEILDY-LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTD 115
G + +++ Y E + K + + N++V+EV D
Sbjct: 53 ---------------GLSTPDKLMYYPPEVFIKKRGI--DLHLNAEVIEV---------D 86
Query: 116 SGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEG 175
+ V+ + + Y +++LV G P +PA VF
Sbjct: 87 T-------------GYVRVRENGGEKSYEWDYLVFANGA---SPQVPAIEGVNLKGVF-- 128
Query: 176 QVLHSIDYCKLDKEAASQLLKD---KKVAVVG 204
D A + ++ + V ++G
Sbjct: 129 -TADLPP----DALAIREYMEKYKVENVVIIG 155
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
+ ++GAG+ GL A L H +V E S IGG
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 33/209 (15%), Positives = 62/209 (29%), Gaps = 64/209 (30%)
Query: 5 SKIAIIGAGVSGLAAVKQLRHHNP----VVFEASDSIGGIWKSCSYNSTKLQSHRSDYEF 60
KI ++GA G Q+R + ++FE + S+ + L +
Sbjct: 2 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM-------SFANCALPYVIGE-VV 53
Query: 61 TDFPWPNRDDPGFPSYTEILDYL--ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGG 118
D R E + + V+ +V+ + +
Sbjct: 54 ED-----RRY---------ALAYTPEKFYDRKQI--TVKTYHEVIAI---------N--- 85
Query: 119 NLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVL 178
V+V +N ++ L++ G F + F L
Sbjct: 86 ---DERQ---TVSVLNRKTNEQFEESYDKLILSPGA---SANSLGF---ESDITF---TL 130
Query: 179 HSIDYCKLDKEAASQLLKD---KKVAVVG 204
+++ D +A Q +K KV VVG
Sbjct: 131 RNLE----DTDAIDQFIKANQVDKVLVVG 155
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSI 37
+ + +AIIG G GL K L+ + V+E +
Sbjct: 23 LLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR 61
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721 | Back alignment and structure |
|---|
Score = 42.2 bits (97), Expect = 3e-04
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 12/84 (14%)
Query: 6 KIAIIGAGVSGLAA----------VKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHR 55
+IAI+G G G+AA + + ++EA
Sbjct: 58 RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFL--HDRPGIKAIKVRGL 115
Query: 56 SDYEFTDFPWPNRDDPGFPSYTEI 79
+ N D + E+
Sbjct: 116 KAGRVSAALVHNGDPASGDTIYEV 139
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 511 | |||
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 100.0 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 100.0 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 100.0 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 99.97 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.97 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 99.97 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 99.97 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 99.97 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 99.97 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.97 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 99.96 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 99.96 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 99.96 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 99.96 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 99.96 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 99.96 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 99.96 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.95 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.95 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.95 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 99.95 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 99.94 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 99.94 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.94 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 99.94 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 99.94 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.94 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 99.94 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 99.94 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.94 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.94 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.94 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.94 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 99.94 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 99.94 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.94 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.94 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 99.94 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 99.94 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.94 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.93 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 99.93 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.93 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.93 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.93 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.93 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.93 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.93 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.93 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.93 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.93 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.93 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.93 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.93 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.93 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.93 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.93 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.93 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.92 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.92 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.92 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.92 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.92 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.92 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.92 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.92 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.92 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.92 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.92 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.91 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.91 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.91 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.9 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.9 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.9 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.9 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 99.89 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.88 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.88 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.88 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.88 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.87 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.85 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.84 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.82 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.82 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.8 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.31 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.16 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.15 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 99.12 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 99.11 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 99.09 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 99.09 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.08 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.08 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.07 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.04 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 99.02 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 99.0 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 99.0 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.98 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.97 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.97 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.96 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.95 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.95 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.94 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.94 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.94 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.93 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.91 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.91 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.91 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.91 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.9 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.9 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.9 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.89 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.87 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.86 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.85 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.85 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.84 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.83 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.82 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.82 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.81 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.79 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.79 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.77 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.75 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.75 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.72 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.7 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.7 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.68 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.68 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.66 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.65 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.62 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.61 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.59 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.58 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.58 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.58 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.57 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 98.53 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.52 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.49 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.49 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.48 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.48 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.46 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.46 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.43 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.43 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.43 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.43 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.42 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.42 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.42 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 98.41 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.38 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.38 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.36 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.35 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.35 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.33 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 98.32 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.32 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.29 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.27 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.27 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.27 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.27 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.26 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 98.25 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.25 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.25 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.23 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.22 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.21 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.21 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.21 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.2 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 98.2 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.2 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.19 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.19 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.19 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.19 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.19 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.19 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.18 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.18 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.18 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 98.18 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.18 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.17 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.16 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.16 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.15 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.15 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.15 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 98.14 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.14 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 98.14 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.13 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.13 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.11 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.11 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.11 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 98.1 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.09 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.08 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.07 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.05 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 98.05 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 98.03 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 98.03 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.02 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.01 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 97.99 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.98 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.97 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 97.96 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.95 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 97.95 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 97.94 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.94 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.92 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.91 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 97.91 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 97.91 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 97.9 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 97.89 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.86 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 97.86 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.84 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.84 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 97.84 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.83 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.82 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 97.82 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 97.82 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.81 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.8 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.8 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.8 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 97.8 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 97.79 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 97.79 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 97.77 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.76 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.75 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.73 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.73 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 97.72 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.71 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.67 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.62 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.59 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 97.52 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.51 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.44 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.41 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 97.41 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 97.41 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.4 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.38 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 97.32 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 97.2 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.19 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 97.19 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 97.14 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.13 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 97.09 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 97.02 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.0 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 96.94 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 96.93 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.88 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 96.85 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.82 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.82 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 96.81 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 96.78 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 96.78 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 96.75 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 96.73 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 96.71 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 96.69 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 96.66 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 96.65 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 96.61 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.5 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 96.5 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 96.49 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 96.42 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 96.35 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 96.35 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.34 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 96.33 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 96.32 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 96.32 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 96.24 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 96.19 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 96.16 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 96.15 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 96.15 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.08 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 96.03 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 95.99 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.99 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 95.94 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 95.91 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 95.86 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 95.78 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 95.78 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 95.74 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 95.73 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 95.65 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 95.64 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 95.62 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 95.61 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 95.59 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.52 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.51 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 95.45 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 95.44 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 95.43 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 95.25 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 95.12 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.1 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 95.06 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 94.99 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 94.9 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 94.02 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 93.84 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 93.78 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 93.73 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.63 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 93.6 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 93.55 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.51 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 93.49 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 93.1 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.09 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 93.0 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 92.97 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 92.48 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 92.19 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 92.08 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 91.86 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 91.72 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 91.6 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.31 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.21 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.01 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 90.66 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 90.16 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 90.15 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 90.09 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 90.03 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 89.93 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 89.86 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 89.75 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 89.67 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 89.52 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 89.32 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 89.08 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 89.02 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 88.91 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 88.86 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 88.82 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 88.7 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 88.54 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 88.52 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 88.46 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 88.34 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 88.29 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 88.27 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 88.26 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 88.22 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 88.21 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 88.14 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 88.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 87.98 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 87.96 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 87.94 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 87.86 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 87.83 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 87.63 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.47 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 87.47 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 87.4 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 87.26 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 87.24 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 87.19 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 87.18 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 87.17 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 87.03 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 87.02 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 87.01 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 86.98 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 86.88 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 86.79 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 86.47 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 86.36 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 86.27 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 86.27 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 86.19 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 86.13 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 86.05 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 86.04 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 86.04 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 86.04 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 85.84 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 85.83 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 85.82 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 85.77 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 85.73 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 85.67 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 85.62 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 85.6 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 85.58 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 85.5 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 85.43 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 85.39 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 85.26 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 85.26 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 85.24 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 85.23 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 85.19 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 85.17 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 85.1 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 85.1 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 84.99 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 84.96 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 84.92 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 84.81 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 84.77 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 84.73 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 84.59 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 84.44 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 84.39 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 84.38 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 84.35 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 84.35 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 84.34 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 84.29 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 84.21 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 84.12 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 84.1 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 84.09 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 84.06 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 84.01 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 83.95 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 83.94 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 83.91 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 83.9 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 83.83 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 83.82 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 83.81 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 83.75 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 83.61 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 83.56 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 83.34 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 83.13 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 83.07 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 82.87 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 82.76 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 82.73 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 82.58 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 82.53 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 82.52 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 82.49 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 82.49 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 82.45 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 82.36 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 82.34 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 82.33 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 82.27 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 82.22 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 82.2 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 82.18 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 82.15 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 82.01 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 81.99 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 81.94 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 81.93 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 81.91 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 81.89 |
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=435.50 Aligned_cols=457 Identities=18% Similarity=0.254 Sum_probs=319.5
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCC----CCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP----WPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 76 (511)
.+||+|||||++|+++|..| .|++|+|+|+++.+||+|..+.||++.+++|...++++..+ .+.+ ...++.+
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~-~~~~~~~ 86 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTW-KTTYITQ 86 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCC-SBSEEEH
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCC-cccCCCH
Confidence 36999999999999999999 68899999999999999999899999999999999887431 1233 4678899
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++.+|+..+++++++..+++++++|+++++.. ..+.|+|++.++. ++.||+||+|||.+
T Consensus 87 ~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~--------------~~~~~~V~~~~G~-----~i~ad~lV~AtG~~- 146 (540)
T 3gwf_A 87 PEILEYLEDVVDRFDLRRHFKFGTEVTSALYLD--------------DENLWEVTTDHGE-----VYRAKYVVNAVGLL- 146 (540)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEESCCEEEEEEET--------------TTTEEEEEETTSC-----EEEEEEEEECCCSC-
T ss_pred HHHHHHHHHHHHHcCCcceeEeccEEEEEEEeC--------------CCCEEEEEEcCCC-----EEEeCEEEECCccc-
Confidence 999999999999999988899999999999842 1568999887664 78999999999988
Q ss_pred CCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 157 DVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 157 ~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+.|+.|++| |.+.|.|..+|+..|.. .....+|+|+|||+|.||+|+|.+|++.+. +||+++|++.
T Consensus 147 s~p~~p~ip---G~~~f~g~~~~~~~~~~------~~~~~~krV~VIG~G~sgve~a~~l~~~~~-----~Vtv~~r~~~ 212 (540)
T 3gwf_A 147 SAINFPNLP---GLDTFEGETIHTAAWPE------GKSLAGRRVGVIGTGSTGQQVITSLAPEVE-----HLTVFVRTPQ 212 (540)
T ss_dssp CSBCCCCCT---TGGGCCSEEEEGGGCCS------SCCCTTSEEEEECCSHHHHHHHHHHTTTCS-----EEEEEESSCC
T ss_pred ccCCCCCCC---CccccCCCEEEeecCCC------ccccccceEEEECCCchHHHHHHHHHhhCC-----EEEEEECCCC
Confidence 489999999 99999999999999876 245789999999999999999999998765 4999999999
Q ss_pred eeecCcccCCccchhhhhhhhh----hhh---c-----------CC------Cch--hHHHHH------HH----h----
Q 010421 237 WTVPHYRIWGLPFFMFYSTRFS----QFL---H-----------GS------PNQ--SLLRTL------LC----L---- 276 (511)
Q Consensus 237 ~~~p~~~~~g~p~~~~~~~r~~----~~~---~-----------~~------~~~--~~~~~~------~~----~---- 276 (511)
|++|... .++.......+. ... . .+ |.+ ..+... +. .
T Consensus 213 ~i~p~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~ 289 (540)
T 3gwf_A 213 YSVPVGN---RPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDI 289 (540)
T ss_dssp CEEECCC---CBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCT
T ss_pred ccccCcc---CCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhh
Confidence 9999876 232221111111 000 0 00 000 000000 00 0
Q ss_pred -hhhhhHHHHHHHHHHHHhccCC--cccCCCCCCCccccccccccccccCCchhhhhccCeEEEE---eCceeEEeCCcE
Q 010421 277 -LLSPLRRGVSKFIESYLLWKLP--LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFK---RASKWWFWKGGL 350 (511)
Q Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~---~~~i~~~~~~~v 350 (511)
..+..+....+++...+..++. ..+..|.|+ ++ +|+++.++++|++++++++|+++ ...|++++++||
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~-~~-----g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~gv 363 (540)
T 3gwf_A 290 ATDEAANEAAASFIRAKVAEIIEDPETARKLMPK-GL-----FAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGV 363 (540)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCC-SC-----CCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCC-CC-----CccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCeE
Confidence 0122334455555555555443 344567887 65 99999999999999999999999 677999999999
Q ss_pred EEcCCceeeccEEEEecCCCCcccccccC---CCcccccccCCCCcccceeeecCCCCCceEEE-eeccc-chhhhhHHH
Q 010421 351 EFEDNTKLEADVVILCTGYDGKKKLKAFL---PEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV-GYIES-VSNLHTAEL 425 (511)
Q Consensus 351 ~~~dG~~~~~D~VI~aTG~~~~~~~~~~~---~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~i-G~~~~-~~~~~~~e~ 425 (511)
+++||+++++|+||+||||+++..+..-+ +.++..+.+.+.+....|+++..+++||+|++ |+..+ .+.+..+|.
T Consensus 364 ~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~ 443 (540)
T 3gwf_A 364 VTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIET 443 (540)
T ss_dssp EETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHH
T ss_pred EcCCCCEEECCEEEECCccCccccCcCcceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHH
Confidence 99999999999999999999986322212 22233333345567889999999999999998 76543 344678999
Q ss_pred HHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHhccccCCcceeeeccccHHHH--HH--hhCCCCCCchhhHhh
Q 010421 426 RSIWLSRLIDD----KFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSDEI--CE--EMGWNAWRKRNWLLE 497 (511)
Q Consensus 426 qa~~~a~~l~g----~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~l--~~--~~g~~~~~~~~~~~~ 497 (511)
|++|++++|.. ... +.+...+...+|.+.++... .++.+..|.+||++.= .+ .....|+--..+++
T Consensus 444 q~~~i~~~i~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~---~~t~~~~~~swy~~~~~~g~~~~~~~~p~~~~~~~~- 517 (540)
T 3gwf_A 444 QVEWISDTIGYAERNGVR--AIEPTPEAEAEWTETCTEIA---NATLFTKGDSWIFGANIPGKKPSVLFYLGGLRNYRA- 517 (540)
T ss_dssp HHHHHHHHHHHHHHTTCS--EEEECHHHHHHHHHHHHHHH---TTSCC------------------CCCBCSCHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCe--EEEECHHHHHHHHHHHHHHH---hCCCccCCCcceeCCCCCCCCceEeeCCCCHHHHHH-
Confidence 99999998842 222 22222222334444443322 1222334789998853 22 33334443323332
Q ss_pred hcccCCccCCCCC
Q 010421 498 AFSPYGSKDYEDE 510 (511)
Q Consensus 498 ~~~~~~~~~y~~~ 510 (511)
...-..++||.|.
T Consensus 518 ~~~~~~~~~~~g~ 530 (540)
T 3gwf_A 518 VMAEVAADGYRGF 530 (540)
T ss_dssp HHHHHHHTTSTTE
T ss_pred HHhccchhcCCCe
Confidence 2333455788774
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-52 Score=437.67 Aligned_cols=388 Identities=20% Similarity=0.313 Sum_probs=297.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCC----CCCCCCCCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP----WPNRDDPGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 77 (511)
.+||+|||||++|+++|..| .|++|+|||+++.+||+|..+.||++++++|...++++..+ .+.+ ...++.+.
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~-~~~~~~~~ 99 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNW-SEKYATQP 99 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCC-SSSSCBHH
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCC-ccCCCCHH
Confidence 46999999999999999999 89999999999999999998899999999999999988542 1233 47789999
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~ 157 (511)
++.+|++.+++++++..+++++++|+++++.. ..+.|+|++.++. ++.||+||+|||.+ +
T Consensus 100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~--------------~~~~w~V~~~~G~-----~i~ad~lV~AtG~~-s 159 (549)
T 4ap3_A 100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDE--------------EGLRWTVRTDRGD-----EVSARFLVVAAGPL-S 159 (549)
T ss_dssp HHHHHHHHHHHHTTCGGGEECSCCEEEEEEET--------------TTTEEEEEETTCC-----EEEEEEEEECCCSE-E
T ss_pred HHHHHHHHHHHHcCCCccEEECCEEEEEEEcC--------------CCCEEEEEECCCC-----EEEeCEEEECcCCC-C
Confidence 99999999999999988899999999999842 1568999887664 78999999999987 4
Q ss_pred CCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
.|+.|++| |.+.|.|.++|+..|... .....+|+|+|||+|.||+|+|.+|++.+.+ ||+++|++.|
T Consensus 160 ~p~~p~ip---G~~~f~g~~~~~~~~~~~-----~~~~~~krV~VIG~G~sgve~a~~l~~~~~~-----Vtv~~r~~~~ 226 (549)
T 4ap3_A 160 NANTPAFD---GLDRFTGDIVHTARWPHD-----GVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQ-----LFVFQRSANY 226 (549)
T ss_dssp ECCCCCCT---TGGGCCSEEEEGGGCCTT-----CCCCBTCEEEEECCSHHHHHHHHHHHHHBSE-----EEEEESSCCC
T ss_pred CCCCCCCC---CcccCCCceEEecccccc-----ccccCCCEEEEECCCchHHHHHHHHHhhCCE-----EEEEECCCCc
Confidence 89999999 999999999999998721 1346899999999999999999999998764 9999999999
Q ss_pred eecCcccCCccchhhhhhhh----hh---hhc----------------CCCchhHHHHHHHhh-----------------
Q 010421 238 TVPHYRIWGLPFFMFYSTRF----SQ---FLH----------------GSPNQSLLRTLLCLL----------------- 277 (511)
Q Consensus 238 ~~p~~~~~g~p~~~~~~~r~----~~---~~~----------------~~~~~~~~~~~~~~~----------------- 277 (511)
++|... .++.......+ .. ... ..+.++. ..++...
T Consensus 227 ilp~~~---~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r-~~~~e~~~~~~~~~~~~~~~~~~~ 302 (549)
T 4ap3_A 227 SIPAGN---VPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEER-RAVYEERWKLGGVLFSKAFPDQLT 302 (549)
T ss_dssp EEECC-------CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHH-HHHHHHHHHHCHHHHTTSSTTTTT
T ss_pred cccCcC---CCCCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHH-HHHHHHHHhhcchHHHhhhhhhhc
Confidence 999875 22221111110 00 000 0000000 0000000
Q ss_pred hhhhHHHHHHHHHHHHhccCC--cccCCCCCC-CccccccccccccccCCchhhhhccCeEEEE---eCceeEEeCCcEE
Q 010421 278 LSPLRRGVSKFIESYLLWKLP--LLKYGLKPD-HPFEEDYASCQMAIMPEGFFSEAEKGKIVFK---RASKWWFWKGGLE 351 (511)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~--~~~~~l~p~-~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~---~~~i~~~~~~~v~ 351 (511)
.+........++...+..++. ..+..|.|+ +++ +|+++.++++|++++++++|+++ .+.|++++++||+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~-----~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~gv~ 377 (549)
T 4ap3_A 303 DPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAI-----GAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETGIV 377 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSCCB-----TTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCC-----CccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCcEE
Confidence 122344555566666655542 344567887 776 99999999999999999999999 7789999999999
Q ss_pred EcCCceeeccEEEEecCCCCcccccccC---CCcccccccCCCCcccceeeecCCCCCceEEE-eeccc---chhhhhHH
Q 010421 352 FEDNTKLEADVVILCTGYDGKKKLKAFL---PEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV-GYIES---VSNLHTAE 424 (511)
Q Consensus 352 ~~dG~~~~~D~VI~aTG~~~~~~~~~~~---~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~i-G~~~~---~~~~~~~e 424 (511)
++|| ++++|+||+||||+++..+..-+ +.++..+.+.+.+....|+++..+++||+|++ |+..+ .+.+..+|
T Consensus 378 ~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e 456 (549)
T 4ap3_A 378 TTGA-HYDLDMIVLATGFDAMTGSLDKLEIVGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSE 456 (549)
T ss_dssp ESSC-EEECSEEEECCCEEESSTTGGGSEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHH
T ss_pred eCCC-ceecCEEEECCcccccccccCceeEECCCCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHH
Confidence 9999 99999999999999875322212 22233333345557789999999999999998 65433 24467899
Q ss_pred HHHHHHHHHhc
Q 010421 425 LRSIWLSRLID 435 (511)
Q Consensus 425 ~qa~~~a~~l~ 435 (511)
.|++|++++|.
T Consensus 457 ~~~~~i~~~i~ 467 (549)
T 4ap3_A 457 LHVDWVADAIA 467 (549)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999885
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-52 Score=435.01 Aligned_cols=394 Identities=21% Similarity=0.348 Sum_probs=296.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCC----CCCCCCCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPW----PNRDDPGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 77 (511)
.+||+|||||++|+++|..| .|++|+|||+++.+||+|..+.||+++++++...|+++..|. ..+ ...++.+.
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~-~~~~~~~~ 87 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEW-SENFASQP 87 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCC-SBSSCBHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCc-cccCCCHH
Confidence 46999999999999999999 899999999999999999999999999999999998875443 233 47788999
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~ 157 (511)
++.+|++.+++++++.++++++++|+++++. + ..+.|+|++.++. ++.||+||+|||.. +
T Consensus 88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~--~------------~~~~w~V~~~~G~-----~~~ad~lV~AtG~~-s 147 (545)
T 3uox_A 88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYV--E------------NDRLWEVTLDNEE-----VVTCRFLISATGPL-S 147 (545)
T ss_dssp HHHHHHHHHHHHHTCGGGEECSCCEEEEEEE--G------------GGTEEEEEETTTE-----EEEEEEEEECCCSC-B
T ss_pred HHHHHHHHHHHHcCCcCcEEECCEEEEEEEe--C------------CCCEEEEEECCCC-----EEEeCEEEECcCCC-C
Confidence 9999999999999998889999999999984 1 1578999887654 78999999999987 4
Q ss_pred CCCCCCCCCCCCCCcccceEEeccccCccch-hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKLDK-EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~-~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+.|++| |.+.|.|..+|+..|..... ........+|+|+|||+|.||+|+|.+|++.+. +||+++|++.
T Consensus 148 ~p~~p~ip---G~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~-----~Vtv~~r~~~ 219 (545)
T 3uox_A 148 ASRMPDIK---GIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAK-----ELYVFQRTPN 219 (545)
T ss_dssp C---CCCT---TGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBS-----EEEEEESSCC
T ss_pred CCcCCCCC---CccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCC-----EEEEEEcCCC
Confidence 89999999 99999999999998865200 000034678999999999999999999998765 4999999999
Q ss_pred eeecCcccCCccchhhhhh----hhhhhh---cC-----------C-----Cch---hHHHHH---------HHh-----
Q 010421 237 WTVPHYRIWGLPFFMFYST----RFSQFL---HG-----------S-----PNQ---SLLRTL---------LCL----- 276 (511)
Q Consensus 237 ~~~p~~~~~g~p~~~~~~~----r~~~~~---~~-----------~-----~~~---~~~~~~---------~~~----- 276 (511)
|++|... .++...... ++...+ .. + +.+ ..+... +..
T Consensus 220 ~i~p~~~---~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~ 296 (545)
T 3uox_A 220 WCTPLGN---SPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLL 296 (545)
T ss_dssp CCEECCC---CBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTT
T ss_pred ccccCCc---CCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Confidence 9999875 222221111 111110 00 0 000 000000 000
Q ss_pred hhhhhHHHHHHHHHHHHhccCC--cccCCCCC-CCccccccccccccccCCchhhhhccCeEEEE---eCceeEEeCCcE
Q 010421 277 LLSPLRRGVSKFIESYLLWKLP--LLKYGLKP-DHPFEEDYASCQMAIMPEGFFSEAEKGKIVFK---RASKWWFWKGGL 350 (511)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~p-~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~---~~~i~~~~~~~v 350 (511)
..+.....+..++...+..++. ..+..|.| ++++ +|+++.++++|++++++++|+++ .+.|++++++||
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~-----g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~gv 371 (545)
T 3uox_A 297 LNKESNKFLADFVAKKIRQRVKDPVVAEKLIPKDHPF-----GAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEGI 371 (545)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCSCHHHHHHTSCSSSCT-----TSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTEE
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCC-----CCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCeE
Confidence 0022334455556666655543 34466889 6876 99999999999999999999999 577999999999
Q ss_pred EEcCCceeeccEEEEecCCCCcccccc---cCCCcccccccCCCCcccceeeecCCCCCceEEE-eeccc---chhhhhH
Q 010421 351 EFEDNTKLEADVVILCTGYDGKKKLKA---FLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV-GYIES---VSNLHTA 423 (511)
Q Consensus 351 ~~~dG~~~~~D~VI~aTG~~~~~~~~~---~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~i-G~~~~---~~~~~~~ 423 (511)
+++|| ++++|+||+||||++...+.. +.+.++..+.+.+......|+++..+++||+|++ |+..+ .+.+..+
T Consensus 372 ~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~ 450 (545)
T 3uox_A 372 KTADA-AYDLDVIIYATGFDAVTGSLDRIDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCG 450 (545)
T ss_dssp EESSC-EEECSEEEECCCCBSSSCSCTTSEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHH
T ss_pred EeCCC-eeecCEEEECCccccccccCCCceEECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHH
Confidence 99999 999999999999997643221 1222233333345557789999999999999998 44432 2445789
Q ss_pred HHHHHHHHHHhc
Q 010421 424 ELRSIWLSRLID 435 (511)
Q Consensus 424 e~qa~~~a~~l~ 435 (511)
|.|++|++++|.
T Consensus 451 e~~~~~i~~~i~ 462 (545)
T 3uox_A 451 GLQAEWVLRMIS 462 (545)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999884
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=410.12 Aligned_cols=359 Identities=24% Similarity=0.393 Sum_probs=286.3
Q ss_pred CeEEEECCCHHHHHHHHhc-c----CCC---cEEEcCCCCcCccccCC---------------CcCceeccCCCCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL-R----HHN---PVVFEASDSIGGIWKSC---------------SYNSTKLQSHRSDYEFT 61 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~----g~~---v~v~e~~~~~GG~w~~~---------------~~~~~~~~~~~~~~~~~ 61 (511)
+||+|||||++|+++|+.| . |++ |+|||+++.+||+|... .|+.+..+.++..+.|+
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 7999999999999999999 4 788 99999999999999863 36667788888889999
Q ss_pred CCCCCCC---CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCC
Q 010421 62 DFPWPNR---DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSN 138 (511)
Q Consensus 62 ~~~~~~~---~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 138 (511)
+++++.. ....++++.++.+|++++++++++...++++++|+++++.. +.+.|+|++.+..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~--------------~~~~~~V~~~~~~~g 148 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNE--------------DSQTFTVTVQDHTTD 148 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEET--------------TTTEEEEEEEETTTT
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcC--------------CCCcEEEEEEEcCCC
Confidence 9887532 12678899999999999999999966699999999999841 145899999875444
Q ss_pred ceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHH
Q 010421 139 SIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAE 218 (511)
Q Consensus 139 ~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~ 218 (511)
+..++.||+||+|||++ +.|+.|.+| |.+.|.|.++|+.+|+.. ..+.+|+|+|||+|.||+|+|.+|++
T Consensus 149 ~~~~~~~d~VVvAtG~~-s~p~~p~ip---G~~~~~g~~~hs~~~~~~------~~~~~k~VvVVG~G~sg~eiA~~l~~ 218 (464)
T 2xve_A 149 TIYSEEFDYVVCCTGHF-STPYVPEFE---GFEKFGGRILHAHDFRDA------LEFKDKTVLLVGSSYSAEDIGSQCYK 218 (464)
T ss_dssp EEEEEEESEEEECCCSS-SSBCCCCCB---TTTTCCSEEEEGGGCCCG------GGGTTSEEEEECCSTTHHHHHHHHHH
T ss_pred ceEEEEcCEEEECCCCC-CCCccCCCC---CcccCCceEEehhhhCCH------hHcCCCEEEEEcCCCCHHHHHHHHHH
Confidence 44578999999999998 589999999 888899999999999863 44689999999999999999999999
Q ss_pred hcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCC
Q 010421 219 SNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLP 298 (511)
Q Consensus 219 ~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
.+.+ |+++.|++.. ++..
T Consensus 219 ~g~~-----V~li~~~~~~-~~~~-------------------------------------------------------- 236 (464)
T 2xve_A 219 YGAK-----KLISCYRTAP-MGYK-------------------------------------------------------- 236 (464)
T ss_dssp TTCS-----EEEEECSSCC-CCCC--------------------------------------------------------
T ss_pred hCCe-----EEEEEECCCC-CCCC--------------------------------------------------------
Confidence 8765 9999987641 1000
Q ss_pred cccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEcCCceeeccEEEEecCCCCccccccc
Q 010421 299 LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 299 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~ 378 (511)
+ ..+|+++ ..|.++++++|+++||+++++|.||+||||++++++++
T Consensus 237 -------------------------------~-~~~V~~~-~~V~~i~~~~V~~~dG~~i~~D~Vi~atG~~p~~~~l~- 282 (464)
T 2xve_A 237 -------------------------------W-PENWDER-PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN- 282 (464)
T ss_dssp -------------------------------C-CTTEEEC-SCEEEECSSEEEETTSCEEECSEEEECCCBCCCCTTBC-
T ss_pred -------------------------------C-CCceEEc-CCeEEEeCCEEEECCCCEEeCCEEEECCCCCCCCCCcC-
Confidence 0 1245555 55888888899999999999999999999999987643
Q ss_pred CCCcccccccCCCCc-ccceeeecCCCCCceEEEeecccchhhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 010421 379 LPEPFQSLLEHPSGL-LPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVM 457 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~-~~ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~ 457 (511)
.. .++..+..+. ..+|++++.++.|||||+|.+.....++.+|.||+|+|++|.|+.+||+.++|.+++.++.+.
T Consensus 283 --~~-~gl~~~~~~~v~~~~~~~~~t~~p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G~~~lP~~~~m~~~~~~~~~~- 358 (464)
T 2xve_A 283 --DD-LRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREK- 358 (464)
T ss_dssp --TT-TCCCCCSSSCCSSEETTTEESSSTTEEECSCSCCSSCHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHH-
T ss_pred --cc-cccccCCCcccccccceEecCCCCCEEEEeCcccccchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHH-
Confidence 11 1111122212 368998888999999999998776678999999999999999999999999999988777552
Q ss_pred HHhccc--cCCcceeeeccccHHHHHHhhCCCCCCc
Q 010421 458 KQSTRF--YKRHCISTFSINHSDEICEEMGWNAWRK 491 (511)
Q Consensus 458 ~~~~~~--~~~~~~~~~~~~y~d~l~~~~g~~~~~~ 491 (511)
.+ .+ ..++. .....|+|+|++++|+++.++
T Consensus 359 ~~--~~~~~~~~~--~~~~~Y~~~l~~~~g~~~~~~ 390 (464)
T 2xve_A 359 EL--TLVTAEEMY--TYQGDYIQNLIDMTDYPSFDI 390 (464)
T ss_dssp HH--TCCSHHHHH--HHHHHHHHHHHTTSSSCCCCH
T ss_pred hh--ccCCCCCcc--ccHHHHHHHHHHHcCCCCCCh
Confidence 11 11 11111 013579999999999998755
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=411.40 Aligned_cols=430 Identities=21% Similarity=0.312 Sum_probs=312.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCC----CCCCCCCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPW----PNRDDPGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 77 (511)
.+||+|||||++|+++|..| .|++|+|+|+++.+||+|..+.||++.++++...++++..|. ..+ ...++.+.
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~-~~~~~~~~ 94 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNW-TERYASQP 94 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCC-CBSSCBHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCc-ccccCCHH
Confidence 47999999999999999999 899999999999999999998999999999998888774431 122 36788999
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~ 157 (511)
++.+|++.+++++++..+++++++|+++++.. ..+.|+|++.++. ++.||+||+|||.. +
T Consensus 95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~--------------~~~~w~V~~~~G~-----~~~ad~vV~AtG~~-s 154 (542)
T 1w4x_A 95 EILRYINFVADKFDLRSGITFHTTVTAAAFDE--------------ATNTWTVDTNHGD-----RIRARYLIMASGQL-S 154 (542)
T ss_dssp HHHHHHHHHHHHTTGGGGEECSCCEEEEEEET--------------TTTEEEEEETTCC-----EEEEEEEEECCCSC-C
T ss_pred HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcC--------------CCCeEEEEECCCC-----EEEeCEEEECcCCC-C
Confidence 99999999999999877899999999999841 1467999886554 78999999999998 5
Q ss_pred CCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
.|.+|++| |.+.|.|.++|+..|... ...+.+|+|+|||+|.||+|+|..|+..+.+ |+++.|++.|
T Consensus 155 ~p~~p~i~---G~~~f~G~~~hs~~~~~~-----~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~-----vtv~~r~~~~ 221 (542)
T 1w4x_A 155 VPQLPNFP---GLKDFAGNLYHTGNWPHE-----PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE-----LFVFQRTPHF 221 (542)
T ss_dssp CCCCCCCT---TGGGCCSEEEEGGGCCSS-----CCCCBTCEEEEECCSHHHHHHHHHHHHHBSE-----EEEEESSCCC
T ss_pred CCCCCCCC---CcccCCCceEECCCCCCc-----hhccCCCEEEEECCCccHHHHHHHHhhcCce-----EEEEEcCCcc
Confidence 89999999 888899999999988731 1346899999999999999999999998754 9999999999
Q ss_pred eecCcccCCccchhhhh----hhh---hhhhcC-----------CC----c----hhHHHHHHHh-----------h--h
Q 010421 238 TVPHYRIWGLPFFMFYS----TRF---SQFLHG-----------SP----N----QSLLRTLLCL-----------L--L 278 (511)
Q Consensus 238 ~~p~~~~~g~p~~~~~~----~r~---~~~~~~-----------~~----~----~~~~~~~~~~-----------~--~ 278 (511)
++|... .++..... ..+ ...... .| . ..++...... + .
T Consensus 222 ~~p~~~---~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~ 298 (542)
T 1w4x_A 222 AVPARN---APLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRD 298 (542)
T ss_dssp EEECCC---CBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTC
T ss_pred cccCCC---CCCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcC
Confidence 888754 12211110 000 000000 00 0 0111111000 0 0
Q ss_pred hhhHHHHHHHHHHHHhccCC--cccCCCCC-CCccccccccccccccCCchhhhhccCeEEEE---eCceeEEeCCcEEE
Q 010421 279 SPLRRGVSKFIESYLLWKLP--LLKYGLKP-DHPFEEDYASCQMAIMPEGFFSEAEKGKIVFK---RASKWWFWKGGLEF 352 (511)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~p-~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~---~~~i~~~~~~~v~~ 352 (511)
......+.+++...+..++. ..+..|.| ++++ +|++++++++|++++++++|+++ ...|.++++++|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~-----~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~gv~~ 373 (542)
T 1w4x_A 299 RDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPF-----GTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRT 373 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCS-----SSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCc-----cccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCeEEe
Confidence 11233444555555555442 34556788 5765 99999999999999999999998 56799999999999
Q ss_pred cCCceeeccEEEEecCCCCcccccccC---CCcccccccCCCCcccceeeecCCCCCceEEE-eeccc---chhhhhHHH
Q 010421 353 EDNTKLEADVVILCTGYDGKKKLKAFL---PEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV-GYIES---VSNLHTAEL 425 (511)
Q Consensus 353 ~dG~~~~~D~VI~aTG~~~~~~~~~~~---~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~i-G~~~~---~~~~~~~e~ 425 (511)
+| +++++|+||+||||+++..+..-+ +.++..+.+.+......|+++.++++||+|++ |...+ .+....+|.
T Consensus 374 ~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~ 452 (542)
T 1w4x_A 374 SE-REYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQ 452 (542)
T ss_dssp SS-CEEECSEEEECCCCCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHH
T ss_pred CC-eEEecCEEEEcCCccccccCcCceeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHH
Confidence 99 899999999999999864433212 12222222233455679999999999999998 87642 233478999
Q ss_pred HHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHHHHhccccCCcceeeeccccHHH
Q 010421 426 RSIWLSRLIDDKF--KLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSDE 479 (511)
Q Consensus 426 qa~~~a~~l~g~~--~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~ 479 (511)
|++|++++|.... ...+.+.+.+..++|.+.+++.. .+..+..|.+||++.
T Consensus 453 q~~~ia~~i~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~swy~~~ 505 (542)
T 1w4x_A 453 HVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEIA---DETLYPMTASWYTGA 505 (542)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEECHHHHHHHHHHHHHHH---TTSSGGGCGGGSSSC
T ss_pred HHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHHHHH---hCCCcCCCCcCccCC
Confidence 9999999885321 23344444454556665555433 122233579999874
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=379.99 Aligned_cols=356 Identities=24% Similarity=0.362 Sum_probs=274.2
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCCCcCccccCCC--------------------------------
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASDSIGGIWKSCS-------------------------------- 45 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~~~GG~w~~~~-------------------------------- 45 (511)
.+.+||+|||||++|+++|..| .|. +|+|||+++.+||+|....
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~ 83 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP 83 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCc
Confidence 3568999999999999999999 788 9999999999999998732
Q ss_pred -cCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCC
Q 010421 46 -YNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124 (511)
Q Consensus 46 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 124 (511)
|..+..+.++..+.|++++++... ..|+++.++.+|+++++++++. .++++++|++++..
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~--~i~~~t~V~~v~~~---------------- 144 (447)
T 2gv8_A 84 LYRDLQTNTPIELMGYCDQSFKPQT-LQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKK---------------- 144 (447)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTTC-CSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEE----------------
T ss_pred hhhhhccCCCHHHhccCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhhC--eEEeCCEEEEEEeC----------------
Confidence 223344555666778888888763 7889999999999999998865 79999999999873
Q ss_pred CCceEEEEEeCCCCc-eeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcc----cceEEeccccCccchhhhhhccCCCc
Q 010421 125 HPVWEVAVQTHNSNS-IQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVF----EGQVLHSIDYCKLDKEAASQLLKDKK 199 (511)
Q Consensus 125 ~~~~~v~~~~~~~~~-~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~----~g~~~hs~~~~~~~~~~~~~~~~~k~ 199 (511)
++.|+|++.+..+++ ..++.||+||+|||++ +.|++|.+| |.+.| .|.++|+.+|++. ..+.+|+
T Consensus 145 ~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~-s~p~~p~i~---G~~~~~~~~~g~v~~~~~~~~~------~~~~~k~ 214 (447)
T 2gv8_A 145 DGSWVVTYKGTKAGSPISKDIFDAVSICNGHY-EVPYIPNIK---GLDEYAKAVPGSVLHSSLFREP------ELFVGES 214 (447)
T ss_dssp TTEEEEEEEESSTTCCEEEEEESEEEECCCSS-SSBCBCCCB---THHHHHHHSTTSEEEGGGCCCG------GGGTTCC
T ss_pred CCeEEEEEeecCCCCeeEEEEeCEEEECCCCC-CCCCCCCCC---ChhhhhccCCccEEEecccCCh------hhcCCCE
Confidence 567999988733233 3468999999999998 489999998 76654 5789999999873 4468999
Q ss_pred EEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhh
Q 010421 200 VAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLS 279 (511)
Q Consensus 200 V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 279 (511)
|+|||+|.||+|+|.+|++.+.+ .|+++.|++.+
T Consensus 215 VvVvG~G~sg~e~A~~l~~~~~~----~V~l~~r~~~~------------------------------------------ 248 (447)
T 2gv8_A 215 VLVVGGASSANDLVRHLTPVAKH----PIYQSLLGGGD------------------------------------------ 248 (447)
T ss_dssp EEEECSSHHHHHHHHHHTTTSCS----SEEEECTTCCS------------------------------------------
T ss_pred EEEEccCcCHHHHHHHHHHHhCC----cEEEEeCCCCc------------------------------------------
Confidence 99999999999999999887531 39999987643
Q ss_pred hhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEe--CCcEEEcCCce
Q 010421 280 PLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFW--KGGLEFEDNTK 357 (511)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~--~~~v~~~dG~~ 357 (511)
+.+.+|.+ ...|.++. +++|+++||+.
T Consensus 249 --------------------------------------------------l~~~~i~~-~~~v~~~~~~~~~v~~~dG~~ 277 (447)
T 2gv8_A 249 --------------------------------------------------IQNESLQQ-VPEITKFDPTTREIYLKGGKV 277 (447)
T ss_dssp --------------------------------------------------CBCSSEEE-ECCEEEEETTTTEEEETTTEE
T ss_pred --------------------------------------------------CCCCCeEE-ecCeEEEecCCCEEEECCCCE
Confidence 11123442 23467774 45799999987
Q ss_pred -eeccEEEEecCCCCcccc-----cccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccchhhhhHHHHHHHHH
Q 010421 358 -LEADVVILCTGYDGKKKL-----KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLS 431 (511)
Q Consensus 358 -~~~D~VI~aTG~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa~~~a 431 (511)
+++|.||+||||++++++ ++.+. ..+..+......+|+++++++.|+|||+|.+.....++.++.||+|+|
T Consensus 278 ~~~~D~vi~atG~~~~~~~l~~~~l~~~~---~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~~~~~a~~qa~~~a 354 (447)
T 2gv8_A 278 LSNIDRVIYCTGYLYSVPFPSLAKLKSPE---TKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLA 354 (447)
T ss_dssp ECCCSEEEECCCBCCCCCCHHHHSCCSTT---TCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCHHHHHHHHHHHHH
T ss_pred eccCCEEEECCCCCcCCCCCccccccccc---CceecCCCcccccccccccCCCCcEEEEeccccccCchHHHHHHHHHH
Confidence 799999999999999876 43221 112222223356899999999999999998877667889999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCccee-eeccccHHHHHHhhCCCC
Q 010421 432 RLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCIS-TFSINHSDEICEEMGWNA 488 (511)
Q Consensus 432 ~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~d~l~~~~g~~~ 488 (511)
++|.|+.+||+.++|.+++.+..+..+.....+ |.+. .+...|+|+|++.+|..+
T Consensus 355 ~~~~g~~~lp~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~l~~~~~~~~ 410 (447)
T 2gv8_A 355 RVWSGRLKLPSKEEQLKWQDELMFSLSGANNMY--HSLDYPKDATYINKLHDWCKQAT 410 (447)
T ss_dssp HHHTTSSCCCCHHHHHHHHHHHHHHHTTCGGGT--TBCTTTHHHHHHHHHHHHHHTCS
T ss_pred HHHcCCCCCcCHHHHHHHHHHHHHHhcCCCcce--eecCCccHHHHHHHHHHHhCccc
Confidence 999999999999999987766543211111111 3332 345789999999998764
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=305.89 Aligned_cols=341 Identities=21% Similarity=0.277 Sum_probs=252.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||++|+++|..| .|++|+|+|+++.+||.|.. .|+.+.+..+...+.+++++.+.+ ...++++.++.+
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWPMPAS-QGPYPARAEVLA 80 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG-SCTTCBCSSCGGGSCCSSSCCCCC-SSSSCBHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC-CCCCcEecCchhhhhCCCCCCCCC-ccCCCCHHHHHH
Confidence 57999999999999999999 89999999999999999998 999999999999999999888866 378889999999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
|+.++++++++ .++++++|++++.. ++.|. |++.++ ++.||+||+|||.. ..|.
T Consensus 81 ~l~~~~~~~~~--~~~~~~~v~~i~~~----------------~~~~~~v~~~~g------~~~~d~vV~AtG~~-~~~~ 135 (357)
T 4a9w_A 81 YLAQYEQKYAL--PVLRPIRVQRVSHF----------------GERLRVVARDGR------QWLARAVISATGTW-GEAY 135 (357)
T ss_dssp HHHHHHHHTTC--CEECSCCEEEEEEE----------------TTEEEEEETTSC------EEEEEEEEECCCSG-GGBC
T ss_pred HHHHHHHHcCC--EEEcCCEEEEEEEC----------------CCcEEEEEeCCC------EEEeCEEEECCCCC-CCCC
Confidence 99999999998 79999999999983 45677 664432 78999999999987 4888
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
+|.+| |.+.+.+..+|+..+... ..+.+++|+|||+|.+|+|+|..|++.+ +|+++.|++.+++|
T Consensus 136 ~~~~~---g~~~~~~~~~~~~~~~~~------~~~~~~~v~VvG~G~~g~e~a~~l~~~~------~v~~v~~~~~~~~~ 200 (357)
T 4a9w_A 136 TPEYQ---GLESFAGIQLHSAHYSTP------APFAGMRVAIIGGGNSGAQILAEVSTVA------ETTWITQHEPAFLA 200 (357)
T ss_dssp CCCCT---TGGGCCSEEEEGGGCCCS------GGGTTSEEEEECCSHHHHHHHHHHTTTS------EEEEECSSCCCBCC
T ss_pred CCCCC---CccccCCcEEEeccCCCh------hhcCCCEEEEECCCcCHHHHHHHHHhhC------CEEEEECCCCeecc
Confidence 88888 888888999999988763 4468899999999999999999998774 39999999766666
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... .+..+. ....+.+.. . ....+.+... ..+...
T Consensus 201 ~~~-~~~~~~----~~~~~~~~~----------------------------~-------~~~~~~~~~~-----~~~~~~ 235 (357)
T 4a9w_A 201 DDV-DGRVLF----ERATERWKA----------------------------Q-------QEGREPDLPP-----GGFGDI 235 (357)
T ss_dssp TTC-CTHHHH----TC--------------------------------------------------------------CB
T ss_pred hhh-cCccHH----HHHHHHHhc----------------------------c-------ccccCCCccc-----ccccCc
Confidence 542 010000 000000000 0 0000000000 011122
Q ss_pred ccCCchhhhhccCeEEEEeCceeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceee-
Q 010421 321 IMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRG- 399 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~- 399 (511)
.+.+.+.+.++.+.+.. ...+.+++.++|+++||+++++|.||+|||++++.++++.++ +. .+++.+.+...
T Consensus 236 ~~~~~~~~~~~~g~i~~-~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g-----l~-~~~G~i~vd~~~ 308 (357)
T 4a9w_A 236 VMVPPVLDARARGVLAA-VPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKGLD-----LV-TPQGQVEVDGSG 308 (357)
T ss_dssp CCCHHHHHHHHTTCCCE-ECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGGTTTT-----CB-CTTSCBCBCTTS
T ss_pred ccChhHHHHHhcCceEE-ecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCcccCccc-----cc-CCCCCccccCCc
Confidence 34455566677776443 345788999999999999999999999999999977643221 11 34455656655
Q ss_pred ecCCCCCceEEEe--eccc--chhhhhHHHHHHHHHHHhcCCC
Q 010421 400 TIHPLIPNMAFVG--YIES--VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 400 ~~~~~~pnl~~iG--~~~~--~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+..++.||+|++| .... ......+..||+.+|..+...+
T Consensus 309 l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l 351 (357)
T 4a9w_A 309 LRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYC 351 (357)
T ss_dssp CBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 4668899999999 4443 2345568888888888765443
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=298.51 Aligned_cols=328 Identities=18% Similarity=0.247 Sum_probs=197.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC--------------CCcEEEcCCCCcCccccCC-CcCceeccCC--C---------
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH--------------HNPVVFEASDSIGGIWKSC-SYNSTKLQSH--R--------- 55 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g--------------~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~--~--------- 55 (511)
.+||+||||||+||++|..| .+ ...+.+|+.+.++ |+.+ .||+.+++++ +
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g~~~p~~~~q~~fl~Dlvtl~~P~ 116 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSGMLVPGSKMQISFIKDLATLRDPR 116 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCCCCCCCccccccchhhhccccCCC
Confidence 47999999999999999988 32 3456788877775 7654 4888888875 2
Q ss_pred CccccCC--------CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 56 SDYEFTD--------FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 56 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
.-++|.. ++|+.+ ...|+++.|+.+||++++++++. .++|+++|++|++...+..+ ...+.
T Consensus 117 s~~sf~~yl~~~~rl~~f~~~-~~~~p~r~E~~~Yl~~~A~~~~~--~vrf~~~V~~v~~~~~~~~~--------~~~~~ 185 (501)
T 4b63_A 117 SSFTFLNYLHQKGRLIHFTNL-STFLPARLEFEDYMRWCAQQFSD--VVAYGEEVVEVIPGKSDPSS--------SVVDF 185 (501)
T ss_dssp CTTSHHHHHHHHTCHHHHHTT-CCSCCBHHHHHHHHHHHHHTTGG--GEEESEEEEEEEEECSSTTS--------SCBCE
T ss_pred CccchHHHHHHhCCccCCccc-cCCCCCHHHHHHHHHHHHHHcCC--ceEcceEEEeeccccccccc--------cccce
Confidence 2222211 123333 47899999999999999999876 89999999999985321100 01356
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKK 207 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~ 207 (511)
|+|++.++.+++..++.|++||+||| ..|.+|+++ .|.|+++|+.+|...........++||||+|||+|.
T Consensus 186 ~~V~~~~~~~g~~~~~~ar~vVlatG---~~P~iP~~~------~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~ 256 (501)
T 4b63_A 186 FTVRSRNVETGEISARRTRKVVIAIG---GTAKMPSGL------PQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQ 256 (501)
T ss_dssp EEEEEEETTTCCEEEEEEEEEEECCC---CEECCCTTS------CCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSH
T ss_pred EEEEEecCCCceEEEEEeCEEEECcC---CCCCCCCCC------CCCcceeeccccccchhhccccccCCcEEEEECCcH
Confidence 99999998878878899999999999 467776543 467899999999753322223458999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchh-hhhhhhhhhhcCCCchhHHHHHHH--h-hhhh-hH
Q 010421 208 SAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFM-FYSTRFSQFLHGSPNQSLLRTLLC--L-LLSP-LR 282 (511)
Q Consensus 208 sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~-~~~~r~~~~~~~~~~~~~~~~~~~--~-~~~~-~~ 282 (511)
||+|++.+|++.... .+|++++|++.|+ |... .|+.. .+...+...+...+.......... . .... ..
T Consensus 257 SA~ei~~~L~~~~~~---~~v~~~~R~~~~~-p~~~---s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~ 329 (501)
T 4b63_A 257 SAAEIFHDLQKRYPN---SRTTLIMRDSAMR-PSDD---SPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRL 329 (501)
T ss_dssp HHHHHHHHHHHHSTT---CEEEEECSSSSCC-BCCC---CTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCH
T ss_pred HHHHHHHHHHhcCCC---ceEEEEeCCCccc-cccc---cccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCH
Confidence 999999999986432 4699999998764 4332 22221 112222223333332111110000 0 0000 01
Q ss_pred HHHHHHHHHHHhccCC-----cccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEeCCcEEEcCCce
Q 010421 283 RGVSKFIESYLLWKLP-----LLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTK 357 (511)
Q Consensus 283 ~~~~~~~~~~~~~~~~-----~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~~v~~~dG~~ 357 (511)
..+.......+...+. ...+++.|...+ .. .......++++++.. +.+++++++++.||++
T Consensus 330 ~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v-----------~~--~~~~~~~~~~~v~~~-~~~~~~~~v~~~dg~~ 395 (501)
T 4b63_A 330 ELIEEIYNDMYLQRVKNPDETQWQHRILPERKI-----------TR--VEHHGPQSRMRIHLK-SSKPESEGAANDVKET 395 (501)
T ss_dssp HHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEE-----------EE--EECCSSSSCEEEEEE-ESCC--------CCCE
T ss_pred HHHHHHHHHHHhhccCCCcccccceeecCCcce-----------ee--eeecCCCCeEEEEee-eeEEeCCeeEeCCCeE
Confidence 1111111111111110 001111111100 00 001123445555432 4567788999999999
Q ss_pred eeccEEEEecCCCCccc
Q 010421 358 LEADVVILCTGYDGKKK 374 (511)
Q Consensus 358 ~~~D~VI~aTG~~~~~~ 374 (511)
+++|+||+||||+++.+
T Consensus 396 ~~~D~VI~ATGy~~~~p 412 (501)
T 4b63_A 396 LEVDALMVATGYNRNAH 412 (501)
T ss_dssp EEESEEEECCCEECCTH
T ss_pred EECCEEEECcCCCCCCc
Confidence 99999999999998853
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=274.22 Aligned_cols=320 Identities=19% Similarity=0.268 Sum_probs=213.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCcCceeccCCCCc---cccCCCCCC--CCC-----C
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSYNSTKLQSHRSD---YEFTDFPWP--NRD-----D 70 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~-----~ 70 (511)
.+||+|||||++|+++|..| .|. +|+|||+++ +||+|.. ......+..+... +.+.++..+ ... .
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKH-WPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN 81 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHT-SCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCcccc-CcccccccCcchhcccCCchhhhhcccccccccccc
Confidence 57999999999999999999 888 999999988 9999875 2222222222211 111111111 100 1
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEE
Q 010421 71 PGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVV 150 (511)
Q Consensus 71 ~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVl 150 (511)
..++.+.++.+|+..+++++++ .++++++|++++.. ++.|.|.+.++ ++.||+||+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~gv--~i~~~~~v~~i~~~----------------~~~~~v~~~~g------~~~~d~vVl 137 (369)
T 3d1c_A 82 EEHISGETYAEYLQVVANHYEL--NIFENTVVTNISAD----------------DAYYTIATTTE------TYHADYIFV 137 (369)
T ss_dssp CSSCBHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEC----------------SSSEEEEESSC------CEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEC----------------CCeEEEEeCCC------EEEeCEEEE
Confidence 3467788999999999999998 78999999999973 44688876443 588999999
Q ss_pred eecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 151 CTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 151 AtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
|||+.+ . |.+| + +.++|+..+... ..+.+++|+|||+|.+|+|+|..|++.+. +|++
T Consensus 138 AtG~~~-~---p~ip---~-----~~~~~~~~~~~~------~~~~~~~vvVvG~G~~g~e~a~~l~~~g~-----~V~l 194 (369)
T 3d1c_A 138 ATGDYN-F---PKKP---F-----KYGIHYSEIEDF------DNFNKGQYVVIGGNESGFDAAYQLAKNGS-----DIAL 194 (369)
T ss_dssp CCCSTT-S---BCCC---S-----SSCEEGGGCSCG------GGSCSSEEEEECCSHHHHHHHHHHHHTTC-----EEEE
T ss_pred CCCCCC-c---cCCC---C-----CceechhhcCCh------hhcCCCEEEEECCCcCHHHHHHHHHhcCC-----eEEE
Confidence 999762 3 4455 4 356788877652 34578899999999999999999998865 4999
Q ss_pred EEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcc
Q 010421 231 IVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPF 310 (511)
Q Consensus 231 ~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 310 (511)
+.|++.+..|..+.. ..+. ..
T Consensus 195 v~~~~~~~~~~~d~~-~~~~----~~------------------------------------------------------ 215 (369)
T 3d1c_A 195 YTSTTGLNDPDADPS-VRLS----PY------------------------------------------------------ 215 (369)
T ss_dssp ECC----------CT-TSCC----HH------------------------------------------------------
T ss_pred EecCCCCCCCCCCCC-ccCC----HH------------------------------------------------------
Confidence 999887553322100 0000 00
Q ss_pred ccccccccccccCCchhhhhccC-eEEEEeCc-eeEE--eCCc--EEEcCCceee-ccEEEEecCCCCcccccccCCCcc
Q 010421 311 EEDYASCQMAIMPEGFFSEAEKG-KIVFKRAS-KWWF--WKGG--LEFEDNTKLE-ADVVILCTGYDGKKKLKAFLPEPF 383 (511)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~g-~v~v~~~~-i~~~--~~~~--v~~~dG~~~~-~D~VI~aTG~~~~~~~~~~~~~~~ 383 (511)
..+.+.+.+++. +|+++.+. |.++ ++++ |++.||+++. +|.||+|||++++..+.. ..
T Consensus 216 -----------~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~---~~- 280 (369)
T 3d1c_A 216 -----------TRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIV---QQ- 280 (369)
T ss_dssp -----------HHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHH---HH-
T ss_pred -----------HHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhh---hh-
Confidence 000111234555 48888774 7777 4443 6788998865 699999999999874321 00
Q ss_pred cccccCCCCcccceeeecCCCCCceEEEeecccc-----hhhhhHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 010421 384 QSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-----SNLHTAELRSIWLSRLIDDKFKLPSAEKMLE 448 (511)
Q Consensus 384 ~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~ 448 (511)
.....++.+.+......++.||||++|..... ..+..++.||+++|+.|.++..+|+.++|.+
T Consensus 281 --~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~ 348 (369)
T 3d1c_A 281 --LFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIE 348 (369)
T ss_dssp --HSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTCCCCHHHHH
T ss_pred --hccCCCCCEEechhhcccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccCCCCcchHHH
Confidence 11123344556655566788999999975432 1234688999999999999999998765543
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=255.73 Aligned_cols=289 Identities=17% Similarity=0.151 Sum_probs=209.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||++|+++|..| .|++|+|+|+++.+||.|.. .||...+. .++. .......++..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~-~~~~~~~~------~~~~--------~~~~~~~~~~~ 71 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA-LYPEKYIY------DVAG--------FPKIRAQELIN 71 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH-HCTTSEEC------CSTT--------CSSEEHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh-cCCCceEe------ccCC--------CCCCCHHHHHH
Confidence 37999999999999999999 89999999999999999976 56654431 1111 11235789999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
|+.++++++++ .++++++|++++.. .++.|.|.+.++ ++.||+||+|||..+..|..
T Consensus 72 ~~~~~~~~~~~--~~~~~~~v~~i~~~---------------~~~~~~v~~~~g------~~~~d~vVlAtG~~~~~p~~ 128 (332)
T 3lzw_A 72 NLKEQMAKFDQ--TICLEQAVESVEKQ---------------ADGVFKLVTNEE------THYSKTVIITAGNGAFKPRK 128 (332)
T ss_dssp HHHHHHTTSCC--EEECSCCEEEEEEC---------------TTSCEEEEESSE------EEEEEEEEECCTTSCCEECC
T ss_pred HHHHHHHHhCC--cEEccCEEEEEEEC---------------CCCcEEEEECCC------EEEeCEEEECCCCCcCCCCC
Confidence 99999999987 88999999999983 145788887654 58999999999974226888
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|.+| |.+.|.+..+|+ .+.+. ..+.+++|+|||+|.+|+|+|..|++.+. +|+++.|++.. .+.
T Consensus 129 ~~~~---g~~~~~g~~~~~-~~~~~------~~~~~~~v~vvG~g~~~~e~a~~l~~~~~-----~v~~~~~~~~~-~~~ 192 (332)
T 3lzw_A 129 LELE---NAEQYEGKNLHY-FVDDL------QKFAGRRVAILGGGDSAVDWALMLEPIAK-----EVSIIHRRDKF-RAH 192 (332)
T ss_dssp CCCT---TGGGGBTTTEES-SCSCG------GGGBTCEEEEECSSHHHHHHHHHHTTTBS-----EEEEECSSSSC-SSC
T ss_pred CCCC---ChhhccCceEEE-ecCCH------HHcCCCEEEEECCCHhHHHHHHHHHhhCC-----eEEEEEecCcC-Ccc
Confidence 8888 887777777777 55542 34578999999999999999999988765 49999987642 110
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
.
T Consensus 193 ~------------------------------------------------------------------------------- 193 (332)
T 3lzw_A 193 E------------------------------------------------------------------------------- 193 (332)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEcC-----CceeeccEEEEecCCCCcccccccCCCcccccccCCC
Q 010421 322 MPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFED-----NTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPS 391 (511)
Q Consensus 322 ~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~d-----G~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
...+.+++.+|+++.+. +.+++.++ |++++ ++++++|.||+|||++++..+.+.++... ..
T Consensus 194 ---~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~------~~ 264 (332)
T 3lzw_A 194 ---HSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDI------EK 264 (332)
T ss_dssp ---HHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCE------ET
T ss_pred ---HHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccc------cC
Confidence 00112344567777654 77777654 77776 35689999999999999877644332221 22
Q ss_pred CcccceeeecCCCCCceEEEeecc----cchhhhhHHHHHHHHHHHhc
Q 010421 392 GLLPLYRGTIHPLIPNMAFVGYIE----SVSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 392 ~~~~ly~~~~~~~~pnl~~iG~~~----~~~~~~~~e~qa~~~a~~l~ 435 (511)
+.+.+... ..++.||||++|... .+.....+..|++.+|..+.
T Consensus 265 g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 311 (332)
T 3lzw_A 265 NSIVVKST-METNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAK 311 (332)
T ss_dssp TEEECCTT-SBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEeCCC-CceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHH
Confidence 33333332 235789999999875 23345667778887777553
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=249.33 Aligned_cols=282 Identities=13% Similarity=0.081 Sum_probs=201.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||++|+++|..| .|++|+|+|++...++.+.. . .. ++ ........++.+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~-~------------~~-----~~---~~~~~~~~~~~~ 60 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASH-S------------HG-----FL---GQDGKAPGEIIA 60 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSC-C------------CS-----ST---TCTTCCHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchh-h------------cC-----Cc---CCCCCCHHHHHH
Confidence 48999999999999999999 89999999997644322211 0 00 11 123456789999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
|+.+++++++. ...++++|+++++. ++.|.|.+.++. ++.||+||+|||. .|+.
T Consensus 61 ~~~~~~~~~~~--v~~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~~~~d~vviAtG~---~~~~ 114 (297)
T 3fbs_A 61 EARRQIERYPT--IHWVEGRVTDAKGS----------------FGEFIVEIDGGR-----RETAGRLILAMGV---TDEL 114 (297)
T ss_dssp HHHHHHTTCTT--EEEEESCEEEEEEE----------------TTEEEEEETTSC-----EEEEEEEEECCCC---EEEC
T ss_pred HHHHHHHhcCC--eEEEEeEEEEEEEc----------------CCeEEEEECCCC-----EEEcCEEEECCCC---CCCC
Confidence 99999988742 23346799999883 456888876654 7999999999994 5777
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|.+| |.+.+.+..+|...+.. .....+++|+|||+|.+|+|+|..|++.+ + |+++.|++. .
T Consensus 115 ~~~~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~-----v~~v~~~~~----~ 175 (297)
T 3fbs_A 115 PEIA---GLRERWGSAVFHCPYCH------GYELDQGKIGVIAASPMAIHHALMLPDWG-E-----TTFFTNGIV----E 175 (297)
T ss_dssp CCCB---TTGGGBTTTEESCHHHH------TGGGTTCEEEEECCSTTHHHHHHHGGGTS-E-----EEEECTTTC----C
T ss_pred CCCC---CchhhcCCeeEEcccCc------chhhcCCEEEEEecCccHHHHHHHhhhcC-c-----EEEEECCCC----C
Confidence 8888 77777666666655543 23467899999999999999999998875 4 999988653 0
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
.
T Consensus 176 ~------------------------------------------------------------------------------- 176 (297)
T 3fbs_A 176 P------------------------------------------------------------------------------- 176 (297)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCchhhhhccCeEEEEeCceeEEeCC-cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCC-cccceee
Q 010421 322 MPEGFFSEAEKGKIVFKRASKWWFWKG-GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSG-LLPLYRG 399 (511)
Q Consensus 322 ~~~~~~~~l~~g~v~v~~~~i~~~~~~-~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~ 399 (511)
++.+.+.+++.+|+++...+.+++++ +|+++||+++++|.||+|||++++.++.+.++.+... .+.+ .+.+...
T Consensus 177 -~~~~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~---~~~G~~i~vd~~ 252 (297)
T 3fbs_A 177 -DADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEE---GPMGSTIVTDPM 252 (297)
T ss_dssp -CHHHHHHHHHTTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEE---ETTEEEECCCTT
T ss_pred -CHHHHHHHHHCCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCcccCchhHHhcCCcccc---CCCCceEEeCCC
Confidence 01112345556677776668888877 7999999999999999999999987654322221110 1122 2333333
Q ss_pred ecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhc
Q 010421 400 TIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 400 ~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~ 435 (511)
..++.||+|++|.... +.....+..|++.+|..+.
T Consensus 253 -~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 288 (297)
T 3fbs_A 253 -KQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAH 288 (297)
T ss_dssp -CBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred -CccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence 3467899999998776 5556788889998888664
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=256.77 Aligned_cols=295 Identities=18% Similarity=0.186 Sum_probs=203.6
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
++.+||+|||||++|+++|..| .|++|+|||+++.+||.|.. .+|...+ +.++.+ ......++
T Consensus 3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~------~~~~~~--------~~~~~~~~ 67 (335)
T 2zbw_A 3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA-LYPEKYI------YDVAGF--------PKVYAKDL 67 (335)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH-TCTTSEE------CCSTTC--------SSEEHHHH
T ss_pred CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec-cCCCcee------eccCCC--------CCCCHHHH
Confidence 3458999999999999999999 89999999999999999976 4544321 111111 12346788
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+|+.++++++++ .++++++|+.++.. ++.|+|.+.++. ++.||+||+|||..+..|
T Consensus 68 ~~~l~~~~~~~~~--~~~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~~~~~~lv~AtG~~~~~p 124 (335)
T 2zbw_A 68 VKGLVEQVAPFNP--VYSLGERAETLERE----------------GDLFKVTTSQGN-----AYTAKAVIIAAGVGAFEP 124 (335)
T ss_dssp HHHHHHHHGGGCC--EEEESCCEEEEEEE----------------TTEEEEEETTSC-----EEEEEEEEECCTTSEEEE
T ss_pred HHHHHHHHHHcCC--EEEeCCEEEEEEEC----------------CCEEEEEECCCC-----EEEeCEEEECCCCCCCCC
Confidence 8999999998887 78899999999873 336777765443 789999999999742257
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
..|+++ |.+.+.+.-+|.. +.+ ...+.+++|+|||+|.+|+|+|..|++.+. +|+++.|++.+.
T Consensus 125 ~~~~i~---g~~~~~~~~~~~~-~~~------~~~~~~~~v~viG~G~~g~e~a~~l~~~g~-----~V~~v~~~~~~~- 188 (335)
T 2zbw_A 125 RRIGAP---GEREFEGRGVYYA-VKS------KAEFQGKRVLIVGGGDSAVDWALNLLDTAR-----RITLIHRRPQFR- 188 (335)
T ss_dssp CCCCCT---TTTTTBTTTEESS-CSC------GGGGTTCEEEEECSSHHHHHHHHHTTTTSS-----EEEEECSSSSCC-
T ss_pred CCCCCC---ChhhccCcEEEEe-cCc------hhhcCCCEEEEECCCHHHHHHHHHHHhhCC-----EEEEEEcCCccC-
Confidence 777777 7666655433322 222 133578999999999999999999987764 499999987521
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
+.. . ..
T Consensus 189 ~~~--------~-----~~------------------------------------------------------------- 194 (335)
T 2zbw_A 189 AHE--------A-----SV------------------------------------------------------------- 194 (335)
T ss_dssp SCH--------H-----HH-------------------------------------------------------------
T ss_pred ccH--------H-----HH-------------------------------------------------------------
Confidence 100 0 00
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEc---CC--ceeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFE---DN--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~---dG--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+.+.+.+++.+|+++.+. +.+++++ +|+++ +| +++++|.||+|||++++.++.+.++.+. +
T Consensus 195 ----~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~-----~ 265 (335)
T 2zbw_A 195 ----KELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLAL-----E 265 (335)
T ss_dssp ----HHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCE-----E
T ss_pred ----HHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceec-----c
Confidence 001123455567777773 7777655 47776 77 5699999999999999876543222211 1
Q ss_pred CCCcccceeeecCCCCCceEEEeeccc----chhhhhHHHHHHHHHHHhc
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIES----VSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~----~~~~~~~e~qa~~~a~~l~ 435 (511)
.+.+.+... +.++.||+|++|.... ......+..|++.+|..+.
T Consensus 266 -~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 313 (335)
T 2zbw_A 266 -KNKIKVDTT-MATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAA 313 (335)
T ss_dssp -TTEEECCTT-CBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred -CCeeeeCCC-CCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHH
Confidence 233333332 2367899999997653 2234567778888777654
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=253.80 Aligned_cols=291 Identities=18% Similarity=0.231 Sum_probs=203.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcC----CCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCCh
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA----SDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~----~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
+.+||+|||||++|+++|..| .|++|+|+|+ ...+||.|.... ....++.+ ..+...
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~----------~~~~~~~~-------~~~~~~ 83 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTT----------EIENFPGF-------PDGLTG 83 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSS----------EECCSTTC-------TTCEEH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccch----------hhcccCCC-------cccCCH
Confidence 458999999999999999999 8999999999 447899887621 00011111 234568
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++.+|+..+++++++ .+++++ |++++.. .+.|.+.+....++. ++.||+||+|||.
T Consensus 84 ~~~~~~~~~~~~~~gv--~i~~~~-v~~i~~~----------------~~~~~v~~~~~~~~~--~~~~d~vvlAtG~-- 140 (338)
T 3itj_A 84 SELMDRMREQSTKFGT--EIITET-VSKVDLS----------------SKPFKLWTEFNEDAE--PVTTDAIILATGA-- 140 (338)
T ss_dssp HHHHHHHHHHHHHTTC--EEECSC-EEEEECS----------------SSSEEEEETTCSSSC--CEEEEEEEECCCE--
T ss_pred HHHHHHHHHHHHHcCC--EEEEeE-EEEEEEc----------------CCEEEEEEEecCCCc--EEEeCEEEECcCC--
Confidence 8999999999999998 788887 9998873 556777664222222 7899999999995
Q ss_pred CCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 157 DVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 157 ~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|..|.+| |.+.+.+..+|...+.... .....+++|+|||+|.+|+|+|..|++.+. +|+++.|++.
T Consensus 141 -~~~~~~~~---g~~~~~~~~~~~~~~~~~~----~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~-----~v~~v~~~~~ 207 (338)
T 3itj_A 141 -SAKRMHLP---GEETYWQKGISACAVCDGA----VPIFRNKPLAVIGGGDSACEEAQFLTKYGS-----KVFMLVRKDH 207 (338)
T ss_dssp -EECCCCCT---THHHHBTTTEESCHHHHTT----SGGGTTSEEEEECSSHHHHHHHHHHTTTSS-----EEEEECSSSS
T ss_pred -CcCCCCCC---CchhccCccEEEchhcccc----hhhcCCCEEEEECCCHHHHHHHHHHHhcCC-----EEEEEEcCCc
Confidence 56777888 7665555555554432210 114678999999999999999999998765 4999999875
Q ss_pred eeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccc
Q 010421 237 WTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYAS 316 (511)
Q Consensus 237 ~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 316 (511)
+. +.
T Consensus 208 ~~-~~--------------------------------------------------------------------------- 211 (338)
T 3itj_A 208 LR-AS--------------------------------------------------------------------------- 211 (338)
T ss_dssp CC-SC---------------------------------------------------------------------------
T ss_pred cC-CC---------------------------------------------------------------------------
Confidence 21 10
Q ss_pred ccccccCCchhhhh-ccCeEEEEeCc-eeEEeCCc-----EEEcC-----CceeeccEEEEecCCCCcccccccCCCccc
Q 010421 317 CQMAIMPEGFFSEA-EKGKIVFKRAS-KWWFWKGG-----LEFED-----NTKLEADVVILCTGYDGKKKLKAFLPEPFQ 384 (511)
Q Consensus 317 ~~~~~~~~~~~~~l-~~g~v~v~~~~-i~~~~~~~-----v~~~d-----G~~~~~D~VI~aTG~~~~~~~~~~~~~~~~ 384 (511)
+.+.+.+ +..+|+++.+. +.+++.++ |++++ ++++++|.||+|||++++..+.+.
T Consensus 212 -------~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~------ 278 (338)
T 3itj_A 212 -------TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG------ 278 (338)
T ss_dssp -------HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT------
T ss_pred -------HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC------
Confidence 0011223 23478888764 77776554 77776 456999999999999998766432
Q ss_pred ccccCCCCcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHhc
Q 010421 385 SLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 385 ~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l~ 435 (511)
++..++++.+.+......++.||+|++|.... +.....+..|++.+|..+.
T Consensus 279 ~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 331 (338)
T 3itj_A 279 QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAE 331 (338)
T ss_dssp TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHH
Confidence 12223344443333334567899999998774 3445677788888887654
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=248.62 Aligned_cols=282 Identities=15% Similarity=0.163 Sum_probs=203.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||++|+++|..| .|++|+|+|++ +||.|..... .+.++. .......++.+
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~----------~~~~~~--------~~~~~~~~~~~ 74 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGI----------VDDYLG--------LIEIQASDMIK 74 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCE----------ECCSTT--------STTEEHHHHHH
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeeccccc----------ccccCC--------CCCCCHHHHHH
Confidence 47999999999999999999 89999999997 8999876110 000111 11245789999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
|+.++++++++ .+++ ++|++++.. ++.|.|.+.++. ++.||+||+|||. .|..
T Consensus 75 ~~~~~~~~~~v--~~~~-~~v~~i~~~----------------~~~~~v~~~~g~-----~~~~d~lvlAtG~---~~~~ 127 (323)
T 3f8d_A 75 VFNKHIEKYEV--PVLL-DIVEKIENR----------------GDEFVVKTKRKG-----EFKADSVILGIGV---KRRK 127 (323)
T ss_dssp HHHHHHHTTTC--CEEE-SCEEEEEEC------------------CEEEEESSSC-----EEEEEEEEECCCC---EECC
T ss_pred HHHHHHHHcCC--EEEE-EEEEEEEec----------------CCEEEEEECCCC-----EEEcCEEEECcCC---CCcc
Confidence 99999999988 7777 899999873 556888776654 7899999999995 5778
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|.+| |.+.|.+..+|...+.. .....+++|+|||+|.+|+|+|..|++.+.+ |+++.|++... +.
T Consensus 128 ~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~-----v~~~~~~~~~~-~~ 192 (323)
T 3f8d_A 128 LGVP---GEQEFAGRGISYCSVAD------APLFKNRVVAVIGGGDSALEGAEILSSYSTK-----VYLIHRRDTFK-AQ 192 (323)
T ss_dssp CCCT---TTTTTBTTTEESCHHHH------GGGGTTCEEEEECCSHHHHHHHHHHHHHSSE-----EEEECSSSSCC-SC
T ss_pred CCCC---chhhhcCCceEEeccCC------HhHcCCCEEEEECCCHHHHHHHHHHHHhCCe-----EEEEEeCCCCC-cC
Confidence 8888 77777666666554433 2446789999999999999999999998754 99999876421 10
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
T Consensus 193 -------------------------------------------------------------------------------- 192 (323)
T 3f8d_A 193 -------------------------------------------------------------------------------- 192 (323)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCchhh-hhccCeEEEEeCc-eeEEeCC----cEEEcC---Cc--eeeccEEEEecCCCCcccccccCCCcccccccCC
Q 010421 322 MPEGFFS-EAEKGKIVFKRAS-KWWFWKG----GLEFED---NT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHP 390 (511)
Q Consensus 322 ~~~~~~~-~l~~g~v~v~~~~-i~~~~~~----~v~~~d---G~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
+.+.+ ..++.+|+++.+. +.+++.+ +|++.| |+ ++++|.||+|||++++.++.+.++.. .++
T Consensus 193 --~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~-----~~~ 265 (323)
T 3f8d_A 193 --PIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIE-----TDT 265 (323)
T ss_dssp --HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCC-----BCT
T ss_pred --HHHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCee-----ecC
Confidence 00111 2234478888775 7777765 377876 87 68999999999999997654433221 123
Q ss_pred CCcccceeeecCCCCCceEEEeeccc----chhhhhHHHHHHHHHHHhc
Q 010421 391 SGLLPLYRGTIHPLIPNMAFVGYIES----VSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 391 ~~~~~ly~~~~~~~~pnl~~iG~~~~----~~~~~~~e~qa~~~a~~l~ 435 (511)
.+.+.+... ..++.||||++|.... +.....+..|++.+|..+.
T Consensus 266 ~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 313 (323)
T 3f8d_A 266 NGYIKVDEW-MRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAY 313 (323)
T ss_dssp TSSBCCCTT-CBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCcEecCCC-ceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHH
Confidence 344444332 3357899999998765 3346678888888887653
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=247.26 Aligned_cols=287 Identities=19% Similarity=0.217 Sum_probs=200.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||++|+++|..| .|++|+|+|++ .+||.|.... ....++.+ .......++.+
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~----------~~~~~~~~-------~~~~~~~~~~~ 69 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSE----------EVENFPGF-------PEPIAGMELAQ 69 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCS----------CBCCSTTC-------SSCBCHHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccccc----------ccccCCCC-------CCCCCHHHHHH
Confidence 47999999999999999999 89999999997 7899887510 00011111 11345788999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+.++++++ .+++ ++|++++.... ++..|+|.+.++. ++.||+||+|||. .|..
T Consensus 70 ~l~~~~~~~gv--~~~~-~~v~~i~~~~~-------------~~~~~~v~~~~g~-----~~~~~~vv~AtG~---~~~~ 125 (325)
T 2q7v_A 70 RMHQQAEKFGA--KVEM-DEVQGVQHDAT-------------SHPYPFTVRGYNG-----EYRAKAVILATGA---DPRK 125 (325)
T ss_dssp HHHHHHHHTTC--EEEE-CCEEEEEECTT-------------SSSCCEEEEESSC-----EEEEEEEEECCCE---EECC
T ss_pred HHHHHHHHcCC--EEEe-eeEEEEEeccC-------------CCceEEEEECCCC-----EEEeCEEEECcCC---CcCC
Confidence 99999999988 6666 68999987200 1223788776654 7999999999995 4677
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|.+| |.+.+.+..+|...+.. .....+++|+|||+|.+|+|+|..|++.+. +|+++.|++... +
T Consensus 126 ~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-----~Vtlv~~~~~~~-~- 189 (325)
T 2q7v_A 126 LGIP---GEDNFWGKGVSTCATCD------GFFYKGKKVVVIGGGDAAVEEGMFLTKFAD-----EVTVIHRRDTLR-A- 189 (325)
T ss_dssp CCCT---TTTTTBTTTEESCHHHH------GGGGTTCEEEEECCSHHHHHHHHHHTTTCS-----EEEEECSSSSCC-S-
T ss_pred CCCC---ChhhccCceEEEeccCC------HHHcCCCEEEEECCCHHHHHHHHHHHhcCC-----EEEEEeCCCcCC-c-
Confidence 7788 76666555566544422 234578999999999999999999988765 499999976421 0
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
.
T Consensus 190 -~------------------------------------------------------------------------------ 190 (325)
T 2q7v_A 190 -N------------------------------------------------------------------------------ 190 (325)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCchhh-hhccCeEEEEeCc-eeEEeCC----cEEEc---CCc--eeeccEEEEecCCCCcccccccCCCcccccccCC
Q 010421 322 MPEGFFS-EAEKGKIVFKRAS-KWWFWKG----GLEFE---DNT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHP 390 (511)
Q Consensus 322 ~~~~~~~-~l~~g~v~v~~~~-i~~~~~~----~v~~~---dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
+.+.+ ..++.+|+++.+. +.++.++ +|+++ +|+ ++++|.||+|||++++..+.+.+ +..++
T Consensus 191 --~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~------~~~~~ 262 (325)
T 2q7v_A 191 --KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT------VSLRD 262 (325)
T ss_dssp --HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT------SCBCT
T ss_pred --hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh------cccCC
Confidence 00001 1233467877764 7777654 47776 676 58999999999999997654321 11123
Q ss_pred CCcccceeeecCCCCCceEEEeecccc--hhhhhHHHHHHHHHHHhcC
Q 010421 391 SGLLPLYRGTIHPLIPNMAFVGYIESV--SNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 391 ~~~~~ly~~~~~~~~pnl~~iG~~~~~--~~~~~~e~qa~~~a~~l~g 436 (511)
.+.+.+... +.++.||+|++|..... .....+..|++.+|..+..
T Consensus 263 ~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 263 DGYVDVRDE-IYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTER 309 (325)
T ss_dssp TSCBCCBTT-TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CccEecCCC-CccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 34678999999987653 3466788899988887654
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=252.89 Aligned_cols=297 Identities=17% Similarity=0.180 Sum_probs=205.2
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
.+.+||+|||||++|+++|..| .|++|+|||+++.+||.|.. .+|...+ +.++.+ ......++
T Consensus 12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~------~~~~~~--------~~~~~~~~ 76 (360)
T 3ab1_A 12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAA-LYPEKHI------YDVAGF--------PEVPAIDL 76 (360)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH-TCTTSEE------CCSTTC--------SSEEHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccc-cCCCccc------ccCCCC--------CCCCHHHH
Confidence 3457999999999999999999 89999999999999999975 4443221 111111 11246788
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+++.+.++++++ .++++++|+.++.. .++.|+|.+.++. ++.||+||+|||..+..|
T Consensus 77 ~~~l~~~~~~~~~--~~~~~~~v~~i~~~---------------~~~~~~v~~~~g~-----~~~~~~li~AtG~~~~~~ 134 (360)
T 3ab1_A 77 VESLWAQAERYNP--DVVLNETVTKYTKL---------------DDGTFETRTNTGN-----VYRSRAVLIAAGLGAFEP 134 (360)
T ss_dssp HHHHHHHHHTTCC--EEECSCCEEEEEEC---------------TTSCEEEEETTSC-----EEEEEEEEECCTTCSCCB
T ss_pred HHHHHHHHHHhCC--EEEcCCEEEEEEEC---------------CCceEEEEECCCc-----EEEeeEEEEccCCCcCCC
Confidence 8999999998887 78899999999983 1447888776553 789999999999763367
Q ss_pred CCCCCCCCCC-CCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 160 IIPAFPNNKG-PEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 160 ~~p~~~~~~g-~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
..|.++ | .+.+.+..+|.. ++. ...+.+++|+|||+|.+|+|+|..|++.+. +|+++.|++.+.
T Consensus 135 ~~~~i~---g~~~~~~~~~v~~~-~~~------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-----~V~lv~~~~~~~ 199 (360)
T 3ab1_A 135 RKLPQL---GNIDHLTGSSVYYA-VKS------VEDFKGKRVVIVGGGDSALDWTVGLIKNAA-----SVTLVHRGHEFQ 199 (360)
T ss_dssp CCCGGG---CCCTTTBTTTEESS-CSC------GGGGTTCEEEEECSSHHHHHHHHHTTTTSS-----EEEEECSSSSCS
T ss_pred CCCCCC---CchhhCcCceEEEe-cCC------HHHcCCCcEEEECCCHHHHHHHHHHHhcCC-----EEEEEEcCCCCC
Confidence 777788 6 555655433322 232 133578999999999999999999988764 499999986421
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
+... .
T Consensus 200 -~~~~-------------~------------------------------------------------------------- 204 (360)
T 3ab1_A 200 -GHGK-------------T------------------------------------------------------------- 204 (360)
T ss_dssp -SCSH-------------H-------------------------------------------------------------
T ss_pred -CCHH-------------H-------------------------------------------------------------
Confidence 1000 0
Q ss_pred ccccCCchhhhhccCeEEEEeC-ceeEEeCC-----cEEEc--CC--ceeeccEEEEecCCCCcccccccCCCccccccc
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRA-SKWWFWKG-----GLEFE--DN--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLE 388 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~-~i~~~~~~-----~v~~~--dG--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~ 388 (511)
.+.+.+..++.+|+++.+ .+.+++.+ +|++. +| .++++|.||+|||++++..+++.++.+.
T Consensus 205 ----~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~----- 275 (360)
T 3ab1_A 205 ----AHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLEL----- 275 (360)
T ss_dssp ----HHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCE-----
T ss_pred ----HHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhcccc-----
Confidence 001123345567888887 47777643 47775 78 4689999999999999876544322211
Q ss_pred CCCCcccceeeecCCCCCceEEEeeccc----chhhhhHHHHHHHHHHHhcC
Q 010421 389 HPSGLLPLYRGTIHPLIPNMAFVGYIES----VSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 389 ~~~~~~~ly~~~~~~~~pnl~~iG~~~~----~~~~~~~e~qa~~~a~~l~g 436 (511)
+ .+.+.+... +.++.||+|++|.... ......+..|++.+|..+.+
T Consensus 276 ~-~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 325 (360)
T 3ab1_A 276 Y-ENALVVDSH-MKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLS 325 (360)
T ss_dssp E-TTEEECCTT-SBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred c-cCeeeecCC-CcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHh
Confidence 1 233333332 2357899999997653 23355677888888876643
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=246.41 Aligned_cols=285 Identities=19% Similarity=0.236 Sum_probs=199.0
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
++.+||+|||||++|+++|..| .|++|+|+|+. .+||.|..... ...++.+ .......++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~~-------~~~~~~~~~ 73 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTD----------VENYPGF-------RNGITGPEL 73 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSC----------BCCSTTC-------TTCBCHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccch----------hhhcCCC-------CCCCCHHHH
Confidence 3458999999999999999999 89999999984 78888765110 0011111 112356789
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE-EEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV-AVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
.+|+.++++++++ .+++++ |++++. .+.|+| .+.++. ++.||+||+|||. .
T Consensus 74 ~~~l~~~~~~~~v--~~~~~~-v~~i~~-----------------~~~~~v~~~~~g~-----~~~~d~lviAtG~---~ 125 (335)
T 2a87_A 74 MDEMREQALRFGA--DLRMED-VESVSL-----------------HGPLKSVVTADGQ-----THRARAVILAMGA---A 125 (335)
T ss_dssp HHHHHHHHHHTTC--EEECCC-EEEEEC-----------------SSSSEEEEETTSC-----EEEEEEEEECCCE---E
T ss_pred HHHHHHHHHHcCC--EEEEee-EEEEEe-----------------CCcEEEEEeCCCC-----EEEeCEEEECCCC---C
Confidence 9999999999888 788876 888876 345777 554443 7899999999995 4
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
|..|.+| |.+.+.+..+|+..+.. .....+++|+|||+|.+|+|+|..|++.+. +|+++.|++.+.
T Consensus 126 ~~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-----~V~l~~~~~~~~ 191 (335)
T 2a87_A 126 ARYLQVP---GEQELLGRGVSSCATCD------GFFFRDQDIAVIGGGDSAMEEATFLTRFAR-----SVTLVHRRDEFR 191 (335)
T ss_dssp ECCCCCT---HHHHTBTTTEESCHHHH------GGGGTTCEEEEECSSHHHHHHHHHHTTTCS-----EEEEECSSSSCS
T ss_pred ccCCCCC---chHhccCCceEEeeccc------hhhcCCCEEEEECCCHHHHHHHHHHHHhCC-----eEEEEEcCCcCC
Confidence 6777777 66555555566544322 223578999999999999999999988765 499999876521
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
..
T Consensus 192 ~~------------------------------------------------------------------------------ 193 (335)
T 2a87_A 192 AS------------------------------------------------------------------------------ 193 (335)
T ss_dssp SC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred ccccCCchh-hhhccCeEEEEeCc-eeEEeCCc----EEEc---CC--ceeeccEEEEecCCCCcccccccCCCcccccc
Q 010421 319 MAIMPEGFF-SEAEKGKIVFKRAS-KWWFWKGG----LEFE---DN--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLL 387 (511)
Q Consensus 319 ~~~~~~~~~-~~l~~g~v~v~~~~-i~~~~~~~----v~~~---dG--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~ 387 (511)
+.+. +.+++.+|+++.+. +.++++++ |+++ +| +++++|.||+|||++++..+.+ . ++.
T Consensus 194 -----~~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~---~l~ 262 (335)
T 2a87_A 194 -----KIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR---E---AID 262 (335)
T ss_dssp -----TTHHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB---T---TBC
T ss_pred -----HHHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh---c---ccc
Confidence 0001 12345578887764 77777654 7776 45 4689999999999999976543 1 121
Q ss_pred cCCCCcccceeeecCCCCCceEEEeecccc--hhhhhHHHHHHHHHHHhc
Q 010421 388 EHPSGLLPLYRGTIHPLIPNMAFVGYIESV--SNLHTAELRSIWLSRLID 435 (511)
Q Consensus 388 ~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~--~~~~~~e~qa~~~a~~l~ 435 (511)
.++++.+.+...+..++.||+|++|..... .....+..|++.+|..+.
T Consensus 263 ~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~ 312 (335)
T 2a87_A 263 VDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAE 312 (335)
T ss_dssp BCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHH
Confidence 233455555554556788999999987653 235567778888877664
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=241.79 Aligned_cols=287 Identities=17% Similarity=0.161 Sum_probs=198.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
+||+|||||++|+++|..| .|+ +|+|+|+ ..+||.|..... ...++.+ .......++.+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~-~~~gg~~~~~~~----------~~~~~~~-------~~~~~~~~~~~ 63 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEK-GMPGGQITGSSE----------IENYPGV-------KEVVSGLDFMQ 63 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECS-SSTTCGGGGCSC----------BCCSTTC-------CSCBCHHHHHH
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEcC-CCCCcccccccc----------cccCCCC-------cccCCHHHHHH
Confidence 6999999999999999999 899 9999999 478888765100 0011111 22356788999
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+.++++++ .+++ ++|++++.. ++.|+|.+.++. ++.||+||+|||. .|..
T Consensus 64 ~l~~~~~~~~v--~~~~-~~v~~i~~~----------------~~~~~v~~~~g~-----~~~~~~vv~AtG~---~~~~ 116 (311)
T 2q0l_A 64 PWQEQCFRFGL--KHEM-TAVQRVSKK----------------DSHFVILAEDGK-----TFEAKSVIIATGG---SPKR 116 (311)
T ss_dssp HHHHHHHTTSC--EEEC-SCEEEEEEE----------------TTEEEEEETTSC-----EEEEEEEEECCCE---EECC
T ss_pred HHHHHHHHcCC--EEEE-EEEEEEEEc----------------CCEEEEEEcCCC-----EEECCEEEECCCC---CCCC
Confidence 99999998887 6776 789999873 445777765443 7899999999995 4677
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|.+| |.+.|.+..+|+..+.. .....+++|+|||+|.+|+|+|..|++.+. +|+++.|++.+.
T Consensus 117 ~~~~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-----~Vtlv~~~~~~~--- 179 (311)
T 2q0l_A 117 TGIK---GESEYWGKGVSTCATCD------GFFYKNKEVAVLGGGDTAVEEAIYLANICK-----KVYLIHRRDGFR--- 179 (311)
T ss_dssp CCCB---THHHHBTTTEESCHHHH------GGGGTTSEEEEECCSHHHHHHHHHHHTTSS-----EEEEECSSSSCC---
T ss_pred CCCC---ChhhccCCcEEEeecCC------hhhcCCCEEEEECCCHHHHHHHHHHHhcCC-----EEEEEeeCCccC---
Confidence 7777 76666555556544332 234578999999999999999999998765 499999876421
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
..
T Consensus 180 ~~------------------------------------------------------------------------------ 181 (311)
T 2q0l_A 180 CA------------------------------------------------------------------------------ 181 (311)
T ss_dssp SC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 00
Q ss_pred cCCchhhhh-ccCeEEEEeCc-eeEEeCC-----cEEEc---CCc--eeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 322 MPEGFFSEA-EKGKIVFKRAS-KWWFWKG-----GLEFE---DNT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 322 ~~~~~~~~l-~~g~v~v~~~~-i~~~~~~-----~v~~~---dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+.+.+.+ ++.+|+++.+. +.++..+ +|+++ +|+ ++++|.||+|||++|+..+.+..+.. .++..+
T Consensus 182 --~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~-~~l~~~ 258 (311)
T 2q0l_A 182 --PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNS-MLCKCD 258 (311)
T ss_dssp --HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSC-BSSCBC
T ss_pred --HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhccccc-ceeEec
Confidence 0001122 23467777664 6676543 46776 676 58999999999999997665422100 011113
Q ss_pred CCCcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHhc
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l~ 435 (511)
+.+.+.+... +.++.||+|++|.... +.....+..|++.+|..+.
T Consensus 259 ~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 305 (311)
T 2q0l_A 259 EYGSIVVDFS-MKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVI 305 (311)
T ss_dssp TTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEeCCc-cccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHH
Confidence 3344444443 3357899999998765 3346778899999888664
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=239.38 Aligned_cols=290 Identities=17% Similarity=0.187 Sum_probs=203.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEE-EcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVV-FEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v-~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
..+||+|||||++|+++|..| .|++|+| +|+ +.+||.|.. .+. +..+| . ........++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~-~~~------------~~~~~--~--~~~~~~~~~~ 64 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS-SSE------------IENYP--G--VAQVMDGISF 64 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG-CSC------------BCCST--T--CCSCBCHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee-ece------------eccCC--C--CCCCCCHHHH
Confidence 457999999999999999999 8999999 999 788998876 110 00111 0 1234578899
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
..|+.++++++++ .++++ +|+++ +..+ .+.|.+.+.... ++.||+||+|||. .|
T Consensus 65 ~~~~~~~~~~~~v--~~~~~-~v~~i-~~~~--------------~~~~~v~~~~~~-----~~~~d~lvlAtG~---~~ 118 (315)
T 3r9u_A 65 MAPWSEQCMRFGL--KHEMV-GVEQI-LKNS--------------DGSFTIKLEGGK-----TELAKAVIVCTGS---AP 118 (315)
T ss_dssp HHHHHHHHTTTCC--EEECC-CEEEE-EECT--------------TSCEEEEETTSC-----EEEEEEEEECCCE---EE
T ss_pred HHHHHHHHHHcCc--EEEEE-EEEEE-ecCC--------------CCcEEEEEecCC-----EEEeCEEEEeeCC---CC
Confidence 9999999999998 67777 88888 6310 256776444332 7899999999995 57
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
+.|.+| |.+.+.+..+|+..+.. .....+++|+|||+|.+|+|+|..|.+.+. +|+++.|++.+.
T Consensus 119 ~~~~~~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~viG~g~~~~e~a~~l~~~g~-----~v~~~~~~~~~~- 183 (315)
T 3r9u_A 119 KKAGFK---GEDEFFGKGVSTCATCD------GFFYKNKEVAVLGGGDTALEEALYLANICS-----KIYLIHRRDEFR- 183 (315)
T ss_dssp CCCCCB---TTTTTBTTTEESCHHHH------GGGGTTSEEEEECCBHHHHHHHHHHHTTSS-----EEEEECSSSSCB-
T ss_pred CCCCCC---ChhhcCCCeEEeeeccc------ccccCcCEEEEECCCHHHHHHHHHHHhhCC-----EEEEEEeCCCCC-
Confidence 888888 77777777777665543 234678999999999999999999998765 499999887521
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
... ..
T Consensus 184 -~~~---------------------------------------~~----------------------------------- 188 (315)
T 3r9u_A 184 -AAP---------------------------------------ST----------------------------------- 188 (315)
T ss_dssp -SCH---------------------------------------HH-----------------------------------
T ss_pred -CCH---------------------------------------HH-----------------------------------
Confidence 000 00
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCCc-----EEEc--CCc--eeeccEEEEecCCCCcccccccCCCcccc-ccc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG-----LEFE--DNT--KLEADVVILCTGYDGKKKLKAFLPEPFQS-LLE 388 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~-----v~~~--dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~-~~~ 388 (511)
+.+.+++.+|+++.+. +.+++.++ |++. +|+ ++++|.||+|||++++..+.+... ..+ +..
T Consensus 189 ------~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~--~~g~l~~ 260 (315)
T 3r9u_A 189 ------VEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDD--SKFLCNM 260 (315)
T ss_dssp ------HHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTT--SCBSSCB
T ss_pred ------HHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhccc--ccceeee
Confidence 0012345578887664 77776543 7776 886 689999999999999977654200 010 112
Q ss_pred CCCCcccceeeecCCCCCceEEEeecc--cchhhhhHHHHHHHHHHHhc
Q 010421 389 HPSGLLPLYRGTIHPLIPNMAFVGYIE--SVSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 389 ~~~~~~~ly~~~~~~~~pnl~~iG~~~--~~~~~~~~e~qa~~~a~~l~ 435 (511)
+.++.+.+.. .+.++.||+|++|... .+.....+..|++.+|..+.
T Consensus 261 ~~~g~i~vd~-~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~ 308 (315)
T 3r9u_A 261 EEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAM 308 (315)
T ss_dssp CTTSCBCCCT-TCBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEeCC-CcccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHH
Confidence 3334444444 2335789999999875 33456678888888887654
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=239.28 Aligned_cols=284 Identities=14% Similarity=0.114 Sum_probs=196.7
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
+||+|||||++|+++|..| .|++|+|+|+ .+||.|.. .+ + +..++ ...+....++.+|
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~-~~-~-----------~~~~~-----~~~~~~~~~~~~~ 61 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILD-TV-D-----------IENYI-----SVPKTEGQKLAGA 61 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGG-CC-E-----------ECCBT-----TBSSEEHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecc-cc-c-----------ccccc-----CcCCCCHHHHHHH
Confidence 6999999999999999999 8899999986 47888875 11 0 00000 1223457789999
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIP 162 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p 162 (511)
+.++++++++ .++++++|+.+++..+ ..+.|.|.+.++. ++.||+||+|||. .|..|
T Consensus 62 ~~~~~~~~~v--~~~~~~~v~~i~~~~~-------------~~~~~~v~~~~g~-----~~~~~~lv~AtG~---~~~~~ 118 (310)
T 1fl2_A 62 LKVHVDEYDV--DVIDSQSASKLIPAAV-------------EGGLHQIETASGA-----VLKARSIIVATGA---KWRNM 118 (310)
T ss_dssp HHHHHHTSCE--EEECSCCEEEEECCSS-------------TTCCEEEEETTSC-----EEEEEEEEECCCE---EECCC
T ss_pred HHHHHHHcCC--eEEccCEEEEEEeccc-------------CCceEEEEECCCC-----EEEeCEEEECcCC---CcCCC
Confidence 9999998888 7888999999986311 1346888876553 7899999999995 46667
Q ss_pred CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 163 AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 163 ~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
.+| |.+.+.+..+|...+.. .....+++|+|||+|.+|+|+|..|++.+. +|+++.|++.+. .
T Consensus 119 ~~~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-----~Vtlv~~~~~~~---~ 181 (310)
T 1fl2_A 119 NVP---GEDQYRTKGVTYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVE-----HVTLLEFAPEMK---A 181 (310)
T ss_dssp CCT---TTTTTBTTTEESCHHHH------GGGGBTCEEEEECCSHHHHHHHHHHHTTBS-----EEEEECSSSSCC---S
T ss_pred CCC---ChhhcccceeEEeccCc------HhhcCCCEEEEECCCHHHHHHHHHHHHhCC-----EEEEEEeCcccC---c
Confidence 777 66666555455443321 234578999999999999999999998765 499999987531 0
Q ss_pred ccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccccc
Q 010421 243 RIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIM 322 (511)
Q Consensus 243 ~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~ 322 (511)
. .
T Consensus 182 ~-------~----------------------------------------------------------------------- 183 (310)
T 1fl2_A 182 D-------Q----------------------------------------------------------------------- 183 (310)
T ss_dssp C-------H-----------------------------------------------------------------------
T ss_pred c-------H-----------------------------------------------------------------------
Confidence 0 0
Q ss_pred CCchhhhhcc-CeEEEEeCc-eeEEeCC-----cEEEcC---Cc--eeeccEEEEecCCCCcccccccCCCcccccccCC
Q 010421 323 PEGFFSEAEK-GKIVFKRAS-KWWFWKG-----GLEFED---NT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHP 390 (511)
Q Consensus 323 ~~~~~~~l~~-g~v~v~~~~-i~~~~~~-----~v~~~d---G~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
.+.+.+++ .+|+++.+. +.++.++ +|++.+ |+ ++++|.||+|||++++..++.. . +..++
T Consensus 184 --~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~---~---l~~~~ 255 (310)
T 1fl2_A 184 --VLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEG---A---VERNR 255 (310)
T ss_dssp --HHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT---T---SCBCT
T ss_pred --HHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhc---c---ccccC
Confidence 00112233 467777764 6777654 467764 54 5899999999999998765321 1 11133
Q ss_pred CCcccceeeecCCCCCceEEEeecccch--hhhhHHHHHHHHHHHhc
Q 010421 391 SGLLPLYRGTIHPLIPNMAFVGYIESVS--NLHTAELRSIWLSRLID 435 (511)
Q Consensus 391 ~~~~~ly~~~~~~~~pnl~~iG~~~~~~--~~~~~e~qa~~~a~~l~ 435 (511)
.+.+.+...+ .++.||+|++|...... ....+..|++.+|..+.
T Consensus 256 ~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 301 (310)
T 1fl2_A 256 MGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 301 (310)
T ss_dssp TSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHH
Confidence 3444444443 36789999999876532 45667788888877654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=238.96 Aligned_cols=285 Identities=15% Similarity=0.179 Sum_probs=191.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
|++.+||+|||||++|+++|..| .|++|+|+|+ ..+||.|.... ....++.+ ......+
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~----------~~~~~~~~--------~~~~~~~ 73 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAP----------LVENYLGF--------KSIVGSE 73 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCS----------CBCCBTTB--------SSBCHHH
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccc----------hhhhcCCC--------cccCHHH
Confidence 44568999999999999999999 8999999999 57888876410 00011110 1235678
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.+++.+.++++++ .+++ ++|.+++.. .+.|+|.+ ++. ++.||+||+|||. .
T Consensus 74 ~~~~~~~~~~~~~v--~~~~-~~v~~i~~~----------------~~~~~v~~-~~~-----~~~~~~li~AtG~---~ 125 (319)
T 3cty_A 74 LAKLFADHAANYAK--IREG-VEVRSIKKT----------------QGGFDIET-NDD-----TYHAKYVIITTGT---T 125 (319)
T ss_dssp HHHHHHHHHHTTSE--EEET-CCEEEEEEE----------------TTEEEEEE-SSS-----EEEEEEEEECCCE---E
T ss_pred HHHHHHHHHHHcCC--EEEE-eeEEEEEEe----------------CCEEEEEE-CCC-----EEEeCEEEECCCC---C
Confidence 88999999988887 6666 689998873 34577765 332 7899999999995 4
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
|..|.+| |.+.+.+..+|...... .....+++|+|||+|.+|+|+|..|++.+. +|+++.|++...
T Consensus 126 ~~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~viG~G~~g~e~a~~l~~~g~-----~V~~i~~~~~~~ 191 (319)
T 3cty_A 126 HKHLGVK---GESEYFGKGTSYCSTCD------GYLFKGKRVVTIGGGNSGAIAAISMSEYVK-----NVTIIEYMPKYM 191 (319)
T ss_dssp ECCCCCB---TTTTTBTTTEESCHHHH------GGGGBTSEEEEECCSHHHHHHHHHHTTTBS-----EEEEECSSSSCC
T ss_pred cccCCCC---ChHHhCCceEEEEEecc------hhhcCCCeEEEECCCHHHHHHHHHHHhhCC-----cEEEEEcCCccC
Confidence 6777777 65555444444433221 133568999999999999999999998765 499999876421
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
+ . .
T Consensus 192 -~--~-------~------------------------------------------------------------------- 194 (319)
T 3cty_A 192 -C--E-------N------------------------------------------------------------------- 194 (319)
T ss_dssp -S--C-------H-------------------------------------------------------------------
T ss_pred -C--C-------H-------------------------------------------------------------------
Confidence 0 0 0
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEEc---CCc--eeeccEEEEecCCCCcccccccCCCcccccc
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEFE---DNT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLL 387 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~~---dG~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~ 387 (511)
.+.+.+.+.+|+++.+. +.++..+ +|++. +|+ ++++|.||+|||++++..+.+.++ +.
T Consensus 195 ------~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g-----l~ 263 (319)
T 3cty_A 195 ------AYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSG-----VK 263 (319)
T ss_dssp ------HHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSC-----CC
T ss_pred ------HHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhcc-----cc
Confidence 00011223345555543 5555433 36665 676 589999999999999976644221 11
Q ss_pred cCCCCcccceeeecCCCCCceEEEeecccc--hhhhhHHHHHHHHHHHhc
Q 010421 388 EHPSGLLPLYRGTIHPLIPNMAFVGYIESV--SNLHTAELRSIWLSRLID 435 (511)
Q Consensus 388 ~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~--~~~~~~e~qa~~~a~~l~ 435 (511)
.++.+.+.+... +.++.||+|++|..... .....|..|++.+|..+.
T Consensus 264 ~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 312 (319)
T 3cty_A 264 LDERGYIVVDSR-QRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLY 312 (319)
T ss_dssp BCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCccEeCCCC-CccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHH
Confidence 133344444444 34678999999987653 345678888888887664
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=239.68 Aligned_cols=288 Identities=16% Similarity=0.241 Sum_probs=196.6
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
++.+||+|||||++|+++|..| .|++|+|+|+ ..+||.|..... ...++.+ .......++
T Consensus 3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~----------~~~~~~~-------~~~~~~~~~ 64 (320)
T 1trb_A 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTE----------VENWPGD-------PNDLTGPLL 64 (320)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGGGCSB----------CCCSTTC-------CSSCBHHHH
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceEecchh----------hhhCCCC-------CCCCCHHHH
Confidence 3468999999999999999999 7899999997 478887754110 0011111 122356788
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+++...++++++ .+++++ |+.++.. .+.|+| +.++. ++.||+||+|||. .|
T Consensus 65 ~~~~~~~~~~~~~--~~~~~~-v~~i~~~----------------~~~~~v-~~~~~-----~~~~~~lv~AtG~---~~ 116 (320)
T 1trb_A 65 MERMHEHATKFET--EIIFDH-INKVDLQ----------------NRPFRL-NGDNG-----EYTCDALIIATGA---SA 116 (320)
T ss_dssp HHHHHHHHHHTTC--EEECCC-EEEEECS----------------SSSEEE-EESSC-----EEEEEEEEECCCE---EE
T ss_pred HHHHHHHHHHCCC--EEEEee-eeEEEec----------------CCEEEE-EeCCC-----EEEcCEEEECCCC---Cc
Confidence 9999999999988 777775 8888762 456777 54443 7899999999995 46
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
..|.+| |.+.+.+..+|+..+.. .....+++|+|||+|.+|+|+|..|++.+. +|+++.|++.+..
T Consensus 117 ~~~~~~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~-----~Vtlv~~~~~~~~ 182 (320)
T 1trb_A 117 RYLGLP---SEEAFKGRGVSACATSD------GFFYRNQKVAVIGGGNTAVEEALYLSNIAS-----EVHLIHRRDGFRA 182 (320)
T ss_dssp CCCCCH---HHHHTBTTTEESCHHHH------GGGGTTSEEEEECSSHHHHHHHHHHTTTSS-----EEEEECSSSSCCC
T ss_pred CCCCCC---ChHHhCCceeEecccCC------ccccCCCeEEEECCCHHHHHHHHHHHhcCC-----eEEEEEeCCcccc
Confidence 777777 65555544555543322 223578999999999999999999988765 4999999765210
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
. ..+
T Consensus 183 -~---------~~~------------------------------------------------------------------ 186 (320)
T 1trb_A 183 -E---------KIL------------------------------------------------------------------ 186 (320)
T ss_dssp -C---------HHH------------------------------------------------------------------
T ss_pred -C---------HHH------------------------------------------------------------------
Confidence 0 000
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCCc-----EEEcC----C--ceeeccEEEEecCCCCcccccccCCCcccccc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG-----LEFED----N--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLL 387 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~-----v~~~d----G--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~ 387 (511)
.+.+.+.+++.+|+++.+. +.+++.++ |++++ | +++++|.||+|||++++..+.+ .. +.
T Consensus 187 ---~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~---~~---l~ 257 (320)
T 1trb_A 187 ---IKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE---GQ---LE 257 (320)
T ss_dssp ---HHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT---TT---SC
T ss_pred ---HHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc---cc---cc
Confidence 0011123455678888774 77776544 77765 5 4689999999999999876543 11 11
Q ss_pred cCCCCcccceeee----cCCCCCceEEEeecccc--hhhhhHHHHHHHHHHHhc
Q 010421 388 EHPSGLLPLYRGT----IHPLIPNMAFVGYIESV--SNLHTAELRSIWLSRLID 435 (511)
Q Consensus 388 ~~~~~~~~ly~~~----~~~~~pnl~~iG~~~~~--~~~~~~e~qa~~~a~~l~ 435 (511)
.+ ++.+.+...+ ..++.||+|++|..... .....+..|++.+|..+.
T Consensus 258 ~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 310 (320)
T 1trb_A 258 LE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 310 (320)
T ss_dssp EE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred cc-CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHH
Confidence 12 3334444432 35778999999987653 234567777777777553
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=239.32 Aligned_cols=285 Identities=16% Similarity=0.209 Sum_probs=193.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcC----CCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA----SDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~----~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
.+||+|||||++|+++|..| .|++|+|+|+ ...+||.|..... ...++.+ +......
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~----------~~~~~~~-------~~~~~~~ 70 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD----------VENFPGF-------PEGILGV 70 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSE----------ECCSTTC-------TTCEEHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccc----------cccCCCC-------ccCCCHH
Confidence 37999999999999999999 8999999999 5667777654110 0011111 1123467
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~ 157 (511)
++.+++...++++++ .+++++ |+.++.. .+.|+|++ ++. ++.||+||+|||..
T Consensus 71 ~~~~~l~~~~~~~gv--~~~~~~-v~~i~~~----------------~~~~~v~~-~~~-----~~~~~~vv~A~G~~-- 123 (333)
T 1vdc_A 71 ELTDKFRKQSERFGT--TIFTET-VTKVDFS----------------SKPFKLFT-DSK-----AILADAVILAIGAV-- 123 (333)
T ss_dssp HHHHHHHHHHHHTTC--EEECCC-CCEEECS----------------SSSEEEEC-SSE-----EEEEEEEEECCCEE--
T ss_pred HHHHHHHHHHHHCCC--EEEEeE-EEEEEEc----------------CCEEEEEE-CCc-----EEEcCEEEECCCCC--
Confidence 889999999998888 777775 8888862 45677776 332 78999999999964
Q ss_pred CCCCCCCCCCCCCCc----ccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 158 VPIIPAFPNNKGPEV----FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~----~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
|..|.+| |.+. |.+..+|+..+.... .....+++|+|||+|.+|+|+|..|++.+. +|+++.|
T Consensus 124 -~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-----~V~lv~~ 190 (333)
T 1vdc_A 124 -AKRLSFV---GSGEVLGGFWNRGISACAVCDGA----APIFRNKPLAVIGGGDSAMEEANFLTKYGS-----KVYIIHR 190 (333)
T ss_dssp -ECCCCCB---TCSSSSSCCBTTTEESCHHHHTT----SGGGTTSEEEEECCSHHHHHHHHHHTTTSS-----EEEEECS
T ss_pred -cCCCCCC---CccccccccccCcEEEeccCccc----hhhcCCCeEEEECCChHHHHHHHHHHhcCC-----eEEEEec
Confidence 6677777 5443 544555554332210 011578999999999999999999987765 4999999
Q ss_pred cCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccc
Q 010421 234 TTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEED 313 (511)
Q Consensus 234 ~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 313 (511)
++... +.
T Consensus 191 ~~~~~-~~------------------------------------------------------------------------ 197 (333)
T 1vdc_A 191 RDAFR-AS------------------------------------------------------------------------ 197 (333)
T ss_dssp SSSCC-SC------------------------------------------------------------------------
T ss_pred CCcCC-cc------------------------------------------------------------------------
Confidence 87421 00
Q ss_pred cccccccccCCchh-hhhccCeEEEEeCc-eeEEeCCc-------EEEc---CC--ceeeccEEEEecCCCCcccccccC
Q 010421 314 YASCQMAIMPEGFF-SEAEKGKIVFKRAS-KWWFWKGG-------LEFE---DN--TKLEADVVILCTGYDGKKKLKAFL 379 (511)
Q Consensus 314 ~~~~~~~~~~~~~~-~~l~~g~v~v~~~~-i~~~~~~~-------v~~~---dG--~~~~~D~VI~aTG~~~~~~~~~~~ 379 (511)
+.+. +.+++.+|+++.+. +.+++.++ |+++ +| +++++|.||+|||++++..+.+
T Consensus 198 ----------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-- 265 (333)
T 1vdc_A 198 ----------KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-- 265 (333)
T ss_dssp ----------HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT--
T ss_pred ----------HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh--
Confidence 0000 12345567877764 77776443 7776 46 4589999999999999976543
Q ss_pred CCcccccccCCCCcccceeeecCCCCCceEEEeecccc--hhhhhHHHHHHHHHHHh
Q 010421 380 PEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV--SNLHTAELRSIWLSRLI 434 (511)
Q Consensus 380 ~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~--~~~~~~e~qa~~~a~~l 434 (511)
. .+..++++.+.+...+..++.||+|++|..... .....+..|++.+|..+
T Consensus 266 -~---~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i 318 (333)
T 1vdc_A 266 -G---GVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDA 318 (333)
T ss_dssp -T---SSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHH
T ss_pred -c---cccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHH
Confidence 1 111233445555554455788999999987653 33556777777777654
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=239.80 Aligned_cols=285 Identities=14% Similarity=0.127 Sum_probs=198.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..+||+|||||++|+++|..| .|++|+|+|+ .+||.|.. ... . ..+. ...+....++.
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~-~~~-~--------~~~~--------~~~~~~~~~l~ 270 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLD-TVD-I--------ENYI--------SVPKTEGQKLA 270 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTT-CSC-B--------CCBT--------TBSSBCHHHHH
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccc-ccc-c--------cccC--------CCCCCCHHHHH
Confidence 357999999999999999999 8999999987 47898875 110 0 0011 11234678899
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+++...++++++ .++++++|+.+++..+ ..+.|+|++.++. ++.||+||+|||. .|.
T Consensus 271 ~~l~~~~~~~gv--~v~~~~~v~~i~~~~~-------------~~~~~~V~~~~g~-----~~~~d~vVlAtG~---~~~ 327 (521)
T 1hyu_A 271 GALKAHVSDYDV--DVIDSQSASKLVPAAT-------------EGGLHQIETASGA-----VLKARSIIIATGA---KWR 327 (521)
T ss_dssp HHHHHHHHTSCE--EEECSCCEEEEECCSS-------------TTSCEEEEETTSC-----EEEEEEEEECCCE---EEC
T ss_pred HHHHHHHHHcCC--EEEcCCEEEEEEeccC-------------CCceEEEEECCCC-----EEEcCEEEECCCC---CcC
Confidence 999999999988 7889999999986311 1346888876654 7899999999995 466
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.|.+| |.+.|.+..+|...+.. ...+.+++|+|||+|.+|+|+|..|+..+.+ ||++.|.+.+. +
T Consensus 328 ~~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~-----Vtlv~~~~~l~-~ 392 (521)
T 1hyu_A 328 NMNVP---GEDQYRTKGVTYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEH-----VTLLEFAPEMK-A 392 (521)
T ss_dssp CCCCT---TTTTTTTTTEECCTTCC------GGGGBTSEEEEECCSHHHHHHHHHHHHHBSE-----EEEECSSSSCC-S
T ss_pred CCCCC---ChhhhcCceEEEeecCc------hhhcCCCeEEEECCCHHHHHHHHHHHhhCCE-----EEEEEeCcccC-c
Confidence 77777 76666555455444332 2346789999999999999999999998754 99999887531 0
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
. .
T Consensus 393 --~-------~--------------------------------------------------------------------- 394 (521)
T 1hyu_A 393 --D-------Q--------------------------------------------------------------------- 394 (521)
T ss_dssp --C-------H---------------------------------------------------------------------
T ss_pred --C-------H---------------------------------------------------------------------
Confidence 0 0
Q ss_pred ccCCchhhhhcc-CeEEEEeCc-eeEEeCC-----cEEEcC---Cc--eeeccEEEEecCCCCcccccccCCCccccccc
Q 010421 321 IMPEGFFSEAEK-GKIVFKRAS-KWWFWKG-----GLEFED---NT--KLEADVVILCTGYDGKKKLKAFLPEPFQSLLE 388 (511)
Q Consensus 321 ~~~~~~~~~l~~-g~v~v~~~~-i~~~~~~-----~v~~~d---G~--~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~ 388 (511)
.+.+.+++ .+|+++.+. +.++.++ +|++.| |+ ++++|.||+|||++++..++. .. +..
T Consensus 395 ----~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~---~~---l~~ 464 (521)
T 1hyu_A 395 ----VLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLE---GA---LER 464 (521)
T ss_dssp ----HHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGT---TT---SCB
T ss_pred ----HHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHh---hh---hcc
Confidence 00112333 567887774 6777653 366654 54 489999999999999876532 11 111
Q ss_pred CCCCcccceeeecCCCCCceEEEeecccch--hhhhHHHHHHHHHHHh
Q 010421 389 HPSGLLPLYRGTIHPLIPNMAFVGYIESVS--NLHTAELRSIWLSRLI 434 (511)
Q Consensus 389 ~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~--~~~~~e~qa~~~a~~l 434 (511)
++.+.+.+...+ .++.||+|++|...... ....|..|++.+|..+
T Consensus 465 ~~~G~I~Vd~~~-~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i 511 (521)
T 1hyu_A 465 NRMGEIIIDAKC-ETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSA 511 (521)
T ss_dssp CTTSCBCCCTTC-BCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEeCCCC-CCCCCCEEEeecccCCCcceeeehHHhHHHHHHHH
Confidence 333444443332 35789999999876532 3566777887777654
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=242.07 Aligned_cols=207 Identities=23% Similarity=0.315 Sum_probs=142.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cC-----CCcEEEcCCCCcCccccCCCc-CceeccC-----------CCCccccCCCC-
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RH-----HNPVVFEASDSIGGIWKSCSY-NSTKLQS-----------HRSDYEFTDFP- 64 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g-----~~v~v~e~~~~~GG~w~~~~~-~~~~~~~-----------~~~~~~~~~~~- 64 (511)
+||+|||||++|+++|..| .| .+|+|||+++.+| |....+ ++..++. |...+.|..+.
T Consensus 31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 5899999999999999999 66 9999999999887 655333 4444332 22222222100
Q ss_pred -------CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce--EEEEEeC
Q 010421 65 -------WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW--EVAVQTH 135 (511)
Q Consensus 65 -------~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 135 (511)
++.+ ...++.+.++.+|+++++++++. .++++++|+++++..+ +.+.| +|++.++
T Consensus 109 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~V~~i~~~~~-------------~~~~~~~~V~~~~g 172 (463)
T 3s5w_A 109 KHDRLVDFINL-GTFYPCRMEFNDYLRWVASHFQE--QSRYGEEVLRIEPMLS-------------AGQVEALRVISRNA 172 (463)
T ss_dssp HTTCHHHHHHH-CCSCCBHHHHHHHHHHHHTTCTT--TEEESEEEEEEEEEEE-------------TTEEEEEEEEEEET
T ss_pred hcCceeecccc-cCCCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEecC-------------CCceEEEEEEEecC
Confidence 0111 24577899999999999999987 8999999999987311 13345 5555555
Q ss_pred CCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccc--eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHH
Q 010421 136 NSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEG--QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLA 213 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g--~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a 213 (511)
. ++..++.||+||+|||. .|.+|.. .+.+.+ .++|+.++.............+++|+|||+|.||+|+|
T Consensus 173 ~-g~~~~~~~d~lVlAtG~---~p~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a 243 (463)
T 3s5w_A 173 D-GEELVRTTRALVVSPGG---TPRIPQV-----FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAF 243 (463)
T ss_dssp T-SCEEEEEESEEEECCCC---EECCCGG-----GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHH
T ss_pred C-CceEEEEeCEEEECCCC---CCCCcch-----hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHH
Confidence 3 44557899999999994 5677652 234445 68998887541100000011689999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 214 KECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 214 ~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
..|++.... .+|+++.|++. ++|..
T Consensus 244 ~~l~~~~~~---~~Vt~v~r~~~-~~p~~ 268 (463)
T 3s5w_A 244 IDLNDSYPS---VQADMILRASA-LKPAD 268 (463)
T ss_dssp HHHHHHCTT---EEEEEECSSSS-CCBCC
T ss_pred HHHHhcCCC---CeEEEEEeCCC-CcCcc
Confidence 999998221 35999999987 44543
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=243.65 Aligned_cols=307 Identities=15% Similarity=0.156 Sum_probs=179.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCCh
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
|+ .+||+|||||++|+++|..| . +.+|+|||+++.++ |.....|.. ... .++.. ...++..
T Consensus 1 M~-~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~gl~~~----------~~g-~~~~~-~~~~~~~ 65 (472)
T 3iwa_A 1 MS-LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGCGIPYY----------VSG-EVSNI-ESLQATP 65 (472)
T ss_dssp ----CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC------------------------------------------
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--ccccccchh----------hcC-CCCch-HHhcccc
Confidence 53 57999999999999999999 4 89999999988763 111001100 000 00000 0111112
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++..+.+.+.+++++ .++++++|++++.. .. .+.+.+..++....+.||+||+|||.
T Consensus 66 ~~~~~~~~~~~~~~gi--~~~~~~~V~~id~~----------------~~--~v~~~~~~~g~~~~~~~d~lviAtG~-- 123 (472)
T 3iwa_A 66 YNVVRDPEFFRINKDV--EALVETRAHAIDRA----------------AH--TVEIENLRTGERRTLKYDKLVLALGS-- 123 (472)
T ss_dssp ---------------C--EEECSEEEEEEETT----------------TT--EEEEEETTTCCEEEEECSEEEECCCE--
T ss_pred chhccCHHHHhhhcCc--EEEECCEEEEEECC----------------CC--EEEEeecCCCCEEEEECCEEEEeCCC--
Confidence 2356677777777888 78899999999862 22 35555533334447899999999994
Q ss_pred CCCCCCCCCCCCCCCcccceEEeccccCccchhhh-hhccCCCcEEEECCCCCHHHHHHHHHHh-cCCCCCCcEEEEEec
Q 010421 157 DVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAA-SQLLKDKKVAVVGFKKSAIDLAKECAES-NQGPEGQPCTMIVRT 234 (511)
Q Consensus 157 ~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~-~~~~~~k~V~VvG~G~sg~d~a~~l~~~-~~~~~~~~Vtl~~R~ 234 (511)
.|..|.+| |.+ .. .+++.....+...... .....+++|+|||+|.+|+|+|..+++. +.+ |+++.|.
T Consensus 124 -~p~~p~i~---G~~-~~-~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~-----Vtlv~~~ 192 (472)
T 3iwa_A 124 -KANRPPVE---GMD-LA-GVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGID-----TTVVELA 192 (472)
T ss_dssp -EECCCSCT---TTT-SB-TEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCE-----EEEECSS
T ss_pred -CcCCCCCC---CCC-CC-CEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCc-----EEEEEcc
Confidence 67888888 654 22 2444333322110000 0013478999999999999999999998 764 9999998
Q ss_pred Cceeec-CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccc
Q 010421 235 THWTVP-HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEED 313 (511)
Q Consensus 235 ~~~~~p-~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 313 (511)
+. ++| ... ..
T Consensus 193 ~~-~l~~~~~-----------~~--------------------------------------------------------- 203 (472)
T 3iwa_A 193 DQ-IMPGFTS-----------KS--------------------------------------------------------- 203 (472)
T ss_dssp SS-SSTTTSC-----------HH---------------------------------------------------------
T ss_pred Cc-ccccccC-----------HH---------------------------------------------------------
Confidence 75 233 111 00
Q ss_pred cccccccccCCchhhhhccCeEEEEeCc-eeEEeC-Cc---EEEcCCceeeccEEEEecCCCCcccccccCCCccccccc
Q 010421 314 YASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK-GG---LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLE 388 (511)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~-~~---v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~ 388 (511)
+.+.+.+.+++.+|+++.+. |.+++. ++ |+++||+++++|.||+|||++++..+.+.++ +..
T Consensus 204 --------~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g-----l~~ 270 (472)
T 3iwa_A 204 --------LSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAG-----LEL 270 (472)
T ss_dssp --------HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHT-----CCB
T ss_pred --------HHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCC-----ccC
Confidence 00111234555677888774 777765 33 6788999999999999999999876532111 111
Q ss_pred CCCCcccceeeecCCCCCceEEEeeccc-----------chhhhhHHHHHHHHHHHhcCCC
Q 010421 389 HPSGLLPLYRGTIHPLIPNMAFVGYIES-----------VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 389 ~~~~~~~ly~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
++++.+.+...+ .++.||+|++|.... ......+..|++.+|..+.|+.
T Consensus 271 ~~~g~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 330 (472)
T 3iwa_A 271 DPRGAIIVDTRM-RTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGD 330 (472)
T ss_dssp CTTCCEECCTTC-BCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEECCCc-ccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence 333444444332 357899999997652 1134679999999999998753
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=239.68 Aligned_cols=296 Identities=16% Similarity=0.172 Sum_probs=191.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
.+|+|||||++|++||..| .+ .+|+|+|+++..++ ..+. .|.. ..... .+.........
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~-------~~~~--l~~~---~~~~~-~~~~~~~~~~~---- 63 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF-------ANCA--LPYV---IGEVV-EDRRYALAYTP---- 63 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSB-------CGGG--HHHH---HTTSS-CCGGGTBCCCH----
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCC-------Ccch--hHHH---HcCCc-cchhhhhhcCH----
Confidence 3799999999999999999 44 67999999876532 1111 1100 00000 00000011111
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.+.+++++ .++.+++|+.++.. .. .+.+....++...++.||+||||||+ .|+
T Consensus 64 ---~~~~~~~~i--~~~~~~~V~~id~~----------------~~--~~~~~~~~~~~~~~~~yd~lVIATGs---~p~ 117 (437)
T 4eqs_A 64 ---EKFYDRKQI--TVKTYHEVIAINDE----------------RQ--TVSVLNRKTNEQFEESYDKLILSPGA---SAN 117 (437)
T ss_dssp ---HHHHHHHCC--EEEETEEEEEEETT----------------TT--EEEEEETTTTEEEEEECSEEEECCCE---EEC
T ss_pred ---HHHHHhcCC--EEEeCCeEEEEEcc----------------Cc--EEEEEeccCCceEEEEcCEEEECCCC---ccc
Confidence 233456777 78889999999863 11 35666655555567899999999994 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.|+++ |...+..+-+ .+...+.. ......+++|+|||+|.+|+|+|..+++.+.+ ||++.|++. ++|
T Consensus 118 ~p~i~---g~~~~~~~~~--~~~~~l~~--~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~-----Vtlv~~~~~-ll~ 184 (437)
T 4eqs_A 118 SLGFE---SDITFTLRNL--EDTDAIDQ--FIKANQVDKVLVVGAGYVSLEVLENLYERGLH-----PTLIHRSDK-INK 184 (437)
T ss_dssp CCCCC---CTTEECCSSH--HHHHHHHH--HHHHHTCCEEEEECCSHHHHHHHHHHHHHTCE-----EEEEESSSC-CST
T ss_pred ccccc---CceEEeeccH--HHHHHHHH--hhhccCCcEEEEECCccchhhhHHHHHhcCCc-----ceeeeeecc-ccc
Confidence 88887 6443322111 11111110 01123578999999999999999999999865 999999875 333
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
..+ .
T Consensus 185 ~~d-------~--------------------------------------------------------------------- 188 (437)
T 4eqs_A 185 LMD-------A--------------------------------------------------------------------- 188 (437)
T ss_dssp TSC-------G---------------------------------------------------------------------
T ss_pred ccc-------c---------------------------------------------------------------------
Confidence 322 0
Q ss_pred ccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceee
Q 010421 321 IMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRG 399 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 399 (511)
.+.+.+.+.+++.+|+++.+. +.+++++.|++++|+++++|.||+|+|.+|+..+.+.. ++..++++.+.+..+
T Consensus 189 ~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~-----gl~~~~~G~I~vd~~ 263 (437)
T 4eqs_A 189 DMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESS-----NIKLDRKGFIPVNDK 263 (437)
T ss_dssp GGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEESCGGGTTS-----SCCCCTTSCEECCTT
T ss_pred hhHHHHHHHhhccceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceecCcHHHHhh-----hhhhccCCcEecCCC
Confidence 001111234455567777765 88899999999999999999999999999987654322 122234444545444
Q ss_pred ecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCCC
Q 010421 400 TIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 400 ~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+ .++.||+|++|.+... ...+.+..|++.+|..+.|..
T Consensus 264 ~-~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~ 312 (437)
T 4eqs_A 264 F-ETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGND 312 (437)
T ss_dssp C-BCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCT
T ss_pred c-cCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCC
Confidence 3 3678999999976431 234678999999999998753
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-27 Score=250.18 Aligned_cols=299 Identities=14% Similarity=0.206 Sum_probs=199.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
+.++|+|||||++|+++|..| . +.+|+|||+++.++ |..+.+ |. ... .........
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~-------~~~~~l--p~---~~~--------g~~~~~~~~ 94 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS-------FANCGL--PY---YIG--------GVITERQKL 94 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS-------BCGGGH--HH---HHT--------TSSCCGGGG
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc-------ccCCCC--ch---hhc--------CcCCChHHh
Confidence 357999999999999999999 4 89999999988764 211111 00 000 011122333
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+..+++.+++++++ .++++++|++++.. .. .+.+.+..++....+.||+||+|||. .
T Consensus 95 ~~~~~~~~~~~~gi--~v~~~~~V~~id~~----------------~~--~v~v~~~~~g~~~~~~~d~lviAtG~---~ 151 (588)
T 3ics_A 95 LVQTVERMSKRFNL--DIRVLSEVVKINKE----------------EK--TITIKNVTTNETYNEAYDVLILSPGA---K 151 (588)
T ss_dssp BSSCHHHHHHHTTC--EEECSEEEEEEETT----------------TT--EEEEEETTTCCEEEEECSEEEECCCE---E
T ss_pred hccCHHHHHHhcCc--EEEECCEEEEEECC----------------CC--EEEEeecCCCCEEEEeCCEEEECCCC---C
Confidence 55677888888998 78999999999873 22 35555433344457899999999994 6
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhh-hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEA-ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
|..|.+| |.+...+ ++++.......... ......+++|+|||+|.+|+|+|..+++.+.+ |+++.|.+.
T Consensus 152 p~~p~i~---G~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~-----Vtlv~~~~~- 221 (588)
T 3ics_A 152 PIVPSIP---GIEEAKA-LFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIE-----VTLVEMANQ- 221 (588)
T ss_dssp ECCCCCT---TTTTCTT-EEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSS-
T ss_pred CCCCCCC---CcccCCC-eEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCe-----EEEEecCCc-
Confidence 7888888 6533322 45544333211000 00124689999999999999999999998764 999999774
Q ss_pred eecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccc
Q 010421 238 TVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASC 317 (511)
Q Consensus 238 ~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 317 (511)
++|... ...
T Consensus 222 ~l~~~~-----------~~~------------------------------------------------------------ 230 (588)
T 3ics_A 222 VMPPID-----------YEM------------------------------------------------------------ 230 (588)
T ss_dssp SCTTSC-----------HHH------------------------------------------------------------
T ss_pred ccccCC-----------HHH------------------------------------------------------------
Confidence 333221 000
Q ss_pred cccccCCchhhhhccCeEEEEeCc-eeEEeC--CcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 318 QMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 318 ~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
.+.+.+.+++.+|+++.+. |.+++. ++|+++||+++++|.||+|||++++..+++..+.. .++++.+
T Consensus 231 -----~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~-----~~~~g~i 300 (588)
T 3ics_A 231 -----AAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLA-----LGVRGTI 300 (588)
T ss_dssp -----HHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECCHHHHHTTCC-----BCGGGCB
T ss_pred -----HHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCChHHHHhcCce-----EcCCCCE
Confidence 0011133455667887764 778876 56999999999999999999999987654322211 1233344
Q ss_pred cceeeecCCCCCceEEEeeccc-----------chhhhhHHHHHHHHHHHhcC
Q 010421 395 PLYRGTIHPLIPNMAFVGYIES-----------VSNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~~a~~l~g 436 (511)
.+... +.++.||+|++|.... ......+..|++.+|..+.|
T Consensus 301 ~vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 301 KVNEK-FQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp CCCTT-SBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred EECCc-cccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcC
Confidence 44433 2357899999997652 12346799999999999988
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-27 Score=241.84 Aligned_cols=301 Identities=15% Similarity=0.085 Sum_probs=183.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCC----ccccCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRS----DYEFTDFPWPNRDDPGF 73 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 73 (511)
|++.+||+|||||++|+++|..| .|++|+|+|+++.+||+|... ..|...+..+.. ...++.. ...
T Consensus 1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~-------~~~ 73 (466)
T 3l8k_A 1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANV-------KIP 73 (466)
T ss_dssp -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCS-------CCC
T ss_pred CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccC-------CCC
Confidence 66678999999999999999999 899999999999999998751 112111100000 0001110 111
Q ss_pred CChHHHHHHH------------HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 74 PSYTEILDYL------------ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 74 ~~~~~~~~yl------------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
.....+..+. ....++.++ .+..+ ++..++. ..+.|...++ +..
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~g-~v~~id~------------------~~~~V~~~~g---~~~ 129 (466)
T 3l8k_A 74 LDFSTVQDRKDYVQELRFKQHKRNMSQYETL--TFYKG-YVKIKDP------------------THVIVKTDEG---KEI 129 (466)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCTTE--EEESE-EEEEEET------------------TEEEEEETTS---CEE
T ss_pred cCHHHHHHHHHhheeccccchHHHHHHhCCC--EEEEe-EEEEecC------------------CeEEEEcCCC---cEE
Confidence 2233333222 222233333 33333 5665553 3445554433 322
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
++.||+||+|||. .|..|.+| |.+ .++++.++..... .....+++|+|||+|.+|+|+|..|++.+.
T Consensus 130 ~~~~d~lviAtG~---~p~~p~i~---G~~----~~~t~~~~~~~~~---~l~~~~~~vvViGgG~~g~e~A~~l~~~g~ 196 (466)
T 3l8k_A 130 EAETRYMIIASGA---ETAKLRLP---GVE----YCLTSDDIFGYKT---SFRKLPQDMVIIGAGYIGLEIASIFRLMGV 196 (466)
T ss_dssp EEEEEEEEECCCE---EECCCCCT---TGG----GSBCHHHHHSTTC---SCCSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred EEecCEEEECCCC---CccCCCCC---Ccc----ceEeHHHHHHHHH---HHhhCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3899999999994 67888888 655 2455544431100 012357899999999999999999999875
Q ss_pred CCCCCcEEEEEecCceeecCc-ccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHY-RIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLL 300 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~-~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
+ |+++.|.+.. +|.. + . . +...+.
T Consensus 197 ~-----Vtlv~~~~~~-l~~~~d-------~----~----------------------------~~~~l~---------- 221 (466)
T 3l8k_A 197 Q-----THIIEMLDRA-LITLED-------Q----D----------------------------IVNTLL---------- 221 (466)
T ss_dssp E-----EEEECSSSSS-CTTSCC-------H----H----------------------------HHHHHH----------
T ss_pred E-----EEEEEeCCcC-CCCCCC-------H----H----------------------------HHHHHH----------
Confidence 4 9999998752 3322 1 0 0 000000
Q ss_pred cCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC---Cc--EEEc--CCc--eeeccEEEEecCCC
Q 010421 301 KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK---GG--LEFE--DNT--KLEADVVILCTGYD 370 (511)
Q Consensus 301 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~---~~--v~~~--dG~--~~~~D~VI~aTG~~ 370 (511)
+.++ |+++.+. +.+++. ++ |.++ ||+ ++++|.||+|||++
T Consensus 222 ---------------------------~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~ 271 (466)
T 3l8k_A 222 ---------------------------SILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRR 271 (466)
T ss_dssp ---------------------------HHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEE
T ss_pred ---------------------------hcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCC
Confidence 1111 4455443 555554 33 5666 676 69999999999999
Q ss_pred Ccccc-cccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 371 GKKKL-KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 371 ~~~~~-~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
++..+ ++. .++..++++ +.+...+ .++.||+|++|.... +.....+..|++.+|..+.|.
T Consensus 272 p~~~l~l~~-----~gl~~~~~G-i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 272 PVIPEGARE-----IGLSISKTG-IVVDETM-KTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp ECCCTTTGG-----GTCCBCSSS-BCCCTTC-BCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred cccccchhh-----cCceeCCCC-EeECCCc-cCCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 98762 111 112223344 5554433 357899999998766 345678999999999988764
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-27 Score=237.43 Aligned_cols=292 Identities=14% Similarity=0.105 Sum_probs=186.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCC--cEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHN--PVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~--v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
+.+||+|||||++|+++|..| .|.+ |+|+|+++.++ |....+ ++... .......+
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~-------y~~~~l--~~~~~------------~~~~~~~~ 66 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIP-------YERPPL--SKEYL------------AREKTFER 66 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCC-------BCSGGG--GTTTT------------TTSSCSGG
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCC-------cCcccC--CHHHH------------cCCCCHHH
Confidence 357999999999999999999 6766 99999987652 211100 00000 00001112
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+..+...+.++.++ .++++++|+.++.. .+.|.+.++. .+.||+||+|||. .
T Consensus 67 ~~~~~~~~~~~~~i--~~~~~~~v~~id~~------------------~~~v~~~~g~-----~~~~d~lvlAtG~---~ 118 (415)
T 3lxd_A 67 ICIRPAQFWEDKAV--EMKLGAEVVSLDPA------------------AHTVKLGDGS-----AIEYGKLIWATGG---D 118 (415)
T ss_dssp GBSSCHHHHHHTTE--EEEETCCEEEEETT------------------TTEEEETTSC-----EEEEEEEEECCCE---E
T ss_pred hccCCHHHHHHCCc--EEEeCCEEEEEECC------------------CCEEEECCCC-----EEEeeEEEEccCC---c
Confidence 22222344456677 78888899999862 2357766554 7899999999994 6
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccC-CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLK-DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~-~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
|..|.+| |.+.. .+++.....+... ....... +++|+|||+|.+|+|+|..+.+.+.+ |+++.+.+.+
T Consensus 119 ~~~~~i~---g~~~~--~v~~~~~~~d~~~-l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~-----Vtvv~~~~~~ 187 (415)
T 3lxd_A 119 PRRLSCV---GADLA--GVHAVRTKEDADR-LMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVN-----VTLLEALPRV 187 (415)
T ss_dssp CCCCBTT---SSCCB--TEECCCSHHHHHH-HHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSST
T ss_pred cCCCCCC---Ccccc--CEEEEcCHHHHHH-HHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCe-----EEEEecCCch
Confidence 7888888 54421 1222222111100 0012234 89999999999999999999998754 9999998753
Q ss_pred eecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccc
Q 010421 238 TVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASC 317 (511)
Q Consensus 238 ~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 317 (511)
+ ++.. + ..
T Consensus 188 l-~~~~------~----~~------------------------------------------------------------- 195 (415)
T 3lxd_A 188 L-ARVA------G----EA------------------------------------------------------------- 195 (415)
T ss_dssp T-TTTS------C----HH-------------------------------------------------------------
T ss_pred h-hhhc------C----HH-------------------------------------------------------------
Confidence 2 2110 0 00
Q ss_pred cccccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCC
Q 010421 318 QMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPS 391 (511)
Q Consensus 318 ~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
+.+.+.+.+++.+|+++.+. +.+++.+ +|+++||+++++|.||+|||++++..+.+..+... +
T Consensus 196 ----~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~-----~-- 264 (415)
T 3lxd_A 196 ----LSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASG-----G-- 264 (415)
T ss_dssp ----HHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCC-----S--
T ss_pred ----HHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCc-----C--
Confidence 00111234555678888764 7777653 47889999999999999999999976543222111 1
Q ss_pred CcccceeeecCCCCCceEEEeecccch------------hhhhHHHHHHHHHHHhcCCC
Q 010421 392 GLLPLYRGTIHPLIPNMAFVGYIESVS------------NLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 392 ~~~~ly~~~~~~~~pnl~~iG~~~~~~------------~~~~~e~qa~~~a~~l~g~~ 438 (511)
+++.+..++ .++.||+|++|...... .+..+..||+.+|+.+.|+.
T Consensus 265 ~gi~vd~~~-~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 322 (415)
T 3lxd_A 265 NGVDVDEFC-RTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP 322 (415)
T ss_dssp SSEECCTTC-BCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEECCCC-CcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC
Confidence 123333332 35789999999754321 24789999999999998864
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-28 Score=243.15 Aligned_cols=280 Identities=13% Similarity=0.091 Sum_probs=183.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++.+|+|||||+||++||..| .+.+|+|||+++.++ |....+ ++. +.. ....+++.
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~-------y~~~~l--~~~---l~g----------~~~~~~l~ 65 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP-------YYRPRL--NEI---IAK----------NKSIDDIL 65 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC-------BCGGGH--HHH---HHS----------CCCGGGTB
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC-------cccChh--hHH---HcC----------CCCHHHcc
Confidence 457899999999999999999 789999999987763 211110 000 000 01112222
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+..++.+++++ .++++++|+++++. + .+|++.++. ++.||+||+|||+ .|+
T Consensus 66 ~~~~~~~~~~~i--~~~~~~~V~~id~~----------------~--~~v~~~~g~-----~~~yd~lvlAtG~---~p~ 117 (385)
T 3klj_A 66 IKKNDWYEKNNI--KVITSEFATSIDPN----------------N--KLVTLKSGE-----KIKYEKLIIASGS---IAN 117 (385)
T ss_dssp SSCHHHHHHTTC--EEECSCCEEEEETT----------------T--TEEEETTSC-----EEECSEEEECCCE---EEC
T ss_pred CCCHHHHHHCCC--EEEeCCEEEEEECC----------------C--CEEEECCCC-----EEECCEEEEecCC---CcC
Confidence 333444566788 88999999999872 1 157776654 7999999999994 688
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.|.+| |.+ .+++...+.+.... ......+++|+|||+|.+|+|+|..|++.+.+ ||++.|++.+ ++
T Consensus 118 ~p~i~---G~~----~v~~~~~~~d~~~l-~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~-----Vtvv~~~~~~-l~ 183 (385)
T 3klj_A 118 KIKVP---HAD----EIFSLYSYDDALKI-KDECKNKGKAFIIGGGILGIELAQAIIDSGTP-----ASIGIILEYP-LE 183 (385)
T ss_dssp CCCCT---TCS----CEECCSSHHHHHHH-HHHHHHHSCEEEECCSHHHHHHHHHHHHHTCC-----EEEECSSSSS-CT
T ss_pred CCCCC---CCC----CeEEeCCHHHHHHH-HHHhhcCCeEEEECCCHHHHHHHHHHHhCCCe-----EEEEEcCCcc-ch
Confidence 88888 655 34554433321100 01112378999999999999999999998765 9999998753 23
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
+.. + ... .
T Consensus 184 ~~~------~----~~~----------------------------~---------------------------------- 191 (385)
T 3klj_A 184 RQL------D----RDG----------------------------G---------------------------------- 191 (385)
T ss_dssp TTS------C----HHH----------------------------H----------------------------------
T ss_pred hhc------C----HHH----------------------------H----------------------------------
Confidence 211 0 000 0
Q ss_pred ccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceee
Q 010421 321 IMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRG 399 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 399 (511)
+.+.+.+++.+|+++.+. +.++ |+++++|.||+|||++++..+.+..+.. . ++++.+...
T Consensus 192 ---~~~~~~l~~~gV~~~~~~~v~~i---------g~~~~~D~vv~a~G~~p~~~~~~~~gl~------~-~~gi~vd~~ 252 (385)
T 3klj_A 192 ---LFLKDKLDRLGIKIYTNSNFEEM---------GDLIRSSCVITAVGVKPNLDFIKDTEIA------S-KRGILVNDH 252 (385)
T ss_dssp ---HHHHHHHHTTTCEEECSCCGGGC---------HHHHHHSEEEECCCEEECCGGGTTSCCC------B-SSSEEECTT
T ss_pred ---HHHHHHHHhCCCEEEeCCEEEEc---------CeEEecCeEEECcCcccChhhhhhcCCC------c-CCCEEECCC
Confidence 011123445567776654 4443 6779999999999999997664322211 1 122434333
Q ss_pred ecCCCCCceEEEeeccc-----chhhhhHHHHHHHHHHHhcCCC
Q 010421 400 TIHPLIPNMAFVGYIES-----VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 400 ~~~~~~pnl~~iG~~~~-----~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+ .++.||+|++|.... ...+..+..||+.+|+.+.|+.
T Consensus 253 ~-~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~ 295 (385)
T 3klj_A 253 M-ETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED 295 (385)
T ss_dssp C-BCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred c-ccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence 2 357899999997654 3346789999999999998853
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=226.18 Aligned_cols=184 Identities=17% Similarity=0.279 Sum_probs=126.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
|++.+||+||||||||++||.+| .|++|+|||+. ..||.+.... +........++.+ +...++.+
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~-~~gg~~~~G~-----~~~~~~i~~~~g~-------~~~i~~~~ 67 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGF-MAGGVAAGGQ-----LTTTTIIENFPGF-------PNGIDGNE 67 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS-SGGGCCTTCG-----GGGSSEECCSTTC-------TTCEEHHH
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcccCCC-----cCChHHhhhccCC-------cccCCHHH
Confidence 88889999999999999999999 99999999995 4555432211 1111111112211 22346788
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.+++...+++++. .+. ..+|..+... ...+.+.+.++. ++.||+||+|||+ .
T Consensus 68 l~~~~~~~~~~~~~--~~~-~~~v~~~~~~----------------~~~~~~~~~~~~-----~~~~~~liiATG~---~ 120 (314)
T 4a5l_A 68 LMMNMRTQSEKYGT--TII-TETIDHVDFS----------------TQPFKLFTEEGK-----EVLTKSVIIATGA---T 120 (314)
T ss_dssp HHHHHHHHHHHTTC--EEE-CCCEEEEECS----------------SSSEEEEETTCC-----EEEEEEEEECCCE---E
T ss_pred HHHHHHHHHhhcCc--EEE-EeEEEEeecC----------------CCceEEEECCCe-----EEEEeEEEEcccc---c
Confidence 88899999988886 443 3455555542 233344444333 7999999999994 6
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
|+.|.+| |.+.+.+..++...+.... ...+.+++|+|||+|.+|+|+|..|++.+.+ ||++.|.+.
T Consensus 121 ~~~~~ip---G~~~~~~~~~~~~~~~~~~----~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~-----Vt~v~~~~~ 186 (314)
T 4a5l_A 121 AKRMHVP---GEDKYWQNGVSACAICDGA----VPIFRNKVLMVVGGGDAAMEEALHLTKYGSK-----VIILHRRDA 186 (314)
T ss_dssp ECCCCCT---THHHHBTTTEESCHHHHTT----SGGGTTSEEEEECSSHHHHHHHHHHTTTSSE-----EEEECSSSS
T ss_pred ccccCCC---ccccccccceeeehhhhhh----hhhcCCCeEEEECCChHHHHHHHHHHHhCCe-----eeeeccccc
Confidence 7888888 7766555555554443211 2346789999999999999999999988764 999998764
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=222.76 Aligned_cols=281 Identities=16% Similarity=0.173 Sum_probs=177.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.+||+||||||||++||.+| .|++|+|||++ ..||.+.. .||+. +. ......+++.
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~~~-~~~~~--------------~~-----~~~~~~~~~~ 63 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRVTQ-NSHGF--------------IT-----RDGIKPEEFK 63 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGGSS-CBCCS--------------TT-----CTTBCHHHHH
T ss_pred CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCeeee-ecCCc--------------cC-----CCCCCHHHHH
Confidence 468999999999999999999 89999999995 56776554 33321 11 1123456776
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+.....+.+++. ...+..++..+... .++.++|.+.++. ++.||+|||||| +.|+
T Consensus 64 ~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~v~~~~g~-----~~~a~~liiATG---s~p~ 118 (304)
T 4fk1_A 64 EIGLNEVMKYPS--VHYYEKTVVMITKQ---------------STGLFEIVTKDHT-----KYLAERVLLATG---MQEE 118 (304)
T ss_dssp HHHHHHHTTSTT--EEEEECCEEEEEEC---------------TTSCEEEEETTCC-----EEEEEEEEECCC---CEEE
T ss_pred HHHHHHHHhcCC--EEEEeeEEEEeeec---------------CCCcEEEEECCCC-----EEEeCEEEEccC---Cccc
Confidence 666666666654 34556677777763 1566778776665 899999999999 4688
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCH-HHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSA-IDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg-~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
.|++| |.+.+.+.-++...... ....++++++|||+|..+ .++|..+.+.+. +|+++.|.+...
T Consensus 119 ~p~i~---G~~~~~~~~v~~~~~~~------~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~-----~v~i~~~~~~~~- 183 (304)
T 4fk1_A 119 FPSIP---NVREYYGKSLFSCPYCD------GWELKDQPLIIISENEDHTLHMTKLVYNWST-----DLVIATNGNELS- 183 (304)
T ss_dssp CCSCT---THHHHBTTTEESCHHHH------SGGGTTSCEEEECCSHHHHHHHHHHHTTTCS-----CEEEECSSCCCC-
T ss_pred ccccc---Cccccccceeeeccccc------hhHhcCCceeeecCCCchhhhHHHHHHhCCc-----eEEEEeccccch-
Confidence 89898 76666554444333222 234678899999998764 566666655554 488877654210
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
..
T Consensus 184 ---------------~~--------------------------------------------------------------- 185 (304)
T 4fk1_A 184 ---------------QT--------------------------------------------------------------- 185 (304)
T ss_dssp ---------------HH---------------------------------------------------------------
T ss_pred ---------------hh---------------------------------------------------------------
Confidence 00
Q ss_pred cccCCchhhhhccCeEEEEeCceeEEeCC-----cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRASKWWFWKG-----GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~i~~~~~~-----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
+.+.+.+.++.++...+..+..+ +|.++||+++++|.+|+++|..++..++..++.+ .++++.+
T Consensus 186 ------~~~~l~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~-----~~~~G~I 254 (304)
T 4fk1_A 186 ------IMDELSNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCE-----LQSNGTF 254 (304)
T ss_dssp ------HHHHHHTTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCC-----CCTTSSS
T ss_pred ------hhhhhhccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeE-----ECCCCCE
Confidence 00112222333444444444432 3788999999999888888777665443322211 2344445
Q ss_pred cceeeecCCCCCceEEEeecccc--hhhhhHHHHHHHHHHHh
Q 010421 395 PLYRGTIHPLIPNMAFVGYIESV--SNLHTAELRSIWLSRLI 434 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~~--~~~~~~e~qa~~~a~~l 434 (511)
.+..++ .++.||+|++|..... .....|-.|++.+|..+
T Consensus 255 ~vd~~~-~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i 295 (304)
T 4fk1_A 255 VIDDFG-RTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAI 295 (304)
T ss_dssp CSSTTC-BCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred EECcCC-ccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHH
Confidence 454433 4678999999986532 22445666777666544
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=242.68 Aligned_cols=289 Identities=14% Similarity=0.157 Sum_probs=186.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCC--cEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHN--PVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~--v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++|+|||||++|+++|..| .|.+ |+|+|+++..+ |....+ ++.... . ..+.. ....
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~-------y~~~~l--~~~~~~--g-~~~~~--~~~~------ 62 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP-------YDRPSL--SKAVLD--G-SLERP--PILA------ 62 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS-------BCSGGG--GTHHHH--T-SSSSC--CBSS------
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC-------cCCccc--cHHHhC--C-CCCHH--HhcC------
Confidence 5999999999999999999 7776 99999987653 211100 000000 0 00000 0000
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
...+.++.++ .++++++|+.++.. .++|.+.++. ++.||+||+|||. .|+
T Consensus 63 --~~~~~~~~~i--~~~~~~~v~~id~~------------------~~~v~~~~g~-----~~~~d~lvlAtG~---~p~ 112 (410)
T 3ef6_A 63 --EADWYGEARI--DMLTGPEVTALDVQ------------------TRTISLDDGT-----TLSADAIVIATGS---RAR 112 (410)
T ss_dssp --CTTHHHHTTC--EEEESCCEEEEETT------------------TTEEEETTSC-----EEECSEEEECCCE---EEC
T ss_pred --CHHHHHHCCC--EEEeCCEEEEEECC------------------CCEEEECCCC-----EEECCEEEEccCC---ccc
Confidence 1122345677 88999999999862 1357766654 7899999999994 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.|.+| |.+. ..+++.....+... .......+++|+|||+|.+|+|+|..+++.+.+ |+++.|.+.++..
T Consensus 113 ~~~ip---G~~~--~~v~~~~~~~d~~~-l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~-----Vtvv~~~~~~l~~ 181 (410)
T 3ef6_A 113 TMALP---GSQL--PGVVTLRTYGDVQV-LRDSWTSATRLLIVGGGLIGCEVATTARKLGLS-----VTILEAGDELLVR 181 (410)
T ss_dssp CCCCT---TTTS--TTEECCCSHHHHHH-HHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSSSSHH
T ss_pred CCCCC---Cccc--cceEEeccHHHHHH-HHHHhccCCeEEEECCCHHHHHHHHHHHhCCCe-----EEEEecCCccchh
Confidence 88888 5441 12444333322110 011234689999999999999999999988754 9999998753210
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ...
T Consensus 182 ~~~-----------~~~--------------------------------------------------------------- 187 (410)
T 3ef6_A 182 VLG-----------RRI--------------------------------------------------------------- 187 (410)
T ss_dssp HHC-----------HHH---------------------------------------------------------------
T ss_pred hcC-----------HHH---------------------------------------------------------------
Confidence 000 000
Q ss_pred ccCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCccc
Q 010421 321 IMPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLP 395 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
.+.+.+.+++.+|+++.+. +.+++.+ +|+++||+++++|.||+|||++++..+.+..+... + +++.
T Consensus 188 --~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~-----~--~gi~ 258 (410)
T 3ef6_A 188 --GAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLAC-----D--RGVI 258 (410)
T ss_dssp --HHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCB-----S--SSEE
T ss_pred --HHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCcc-----C--CeEE
Confidence 0111133445567887664 7788765 48899999999999999999999976543222211 1 2233
Q ss_pred ceeeecCCCCCceEEEeecccch----------hhhhHHHHHHHHHHHhcCCC
Q 010421 396 LYRGTIHPLIPNMAFVGYIESVS----------NLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 396 ly~~~~~~~~pnl~~iG~~~~~~----------~~~~~e~qa~~~a~~l~g~~ 438 (511)
+...+ .++.||+|++|...... .+..+..||+.+|+.+.|+.
T Consensus 259 vd~~~-~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 310 (410)
T 3ef6_A 259 VDHCG-ATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN 310 (410)
T ss_dssp CCTTS-BCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred EccCe-eECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC
Confidence 33332 35789999999765422 25789999999999998864
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=236.85 Aligned_cols=291 Identities=15% Similarity=0.189 Sum_probs=186.8
Q ss_pred CeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+||+|||||++|+++|..| . +.+|+|||+++.+|..... .+ .+. ...+....++.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~--~~-----------~~~--------~~~~~~~~~~~ 61 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGG--LS-----------AYF--------NHTINELHEAR 61 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC-------------------------------------C
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCcc--ch-----------hhh--------cCCCCCHHHhh
Confidence 6999999999999999999 4 8999999999877521110 00 000 00111111111
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+.....+++++ .++++++|++++.. ...+.+. ... ...++.||+||+||| ..|.
T Consensus 62 ~~~~~~~~~~gi--~~~~~~~V~~id~~----------------~~~v~v~--~~~--~~~~~~~d~lviAtG---~~p~ 116 (452)
T 3oc4_A 62 YITEEELRRQKI--QLLLNREVVAMDVE----------------NQLIAWT--RKE--EQQWYSYDKLILATG---ASQF 116 (452)
T ss_dssp CCCHHHHHHTTE--EEECSCEEEEEETT----------------TTEEEEE--ETT--EEEEEECSEEEECCC---CCBC
T ss_pred cCCHHHHHHCCC--EEEECCEEEEEECC----------------CCEEEEE--ecC--ceEEEEcCEEEECCC---cccC
Confidence 112233455676 77889999999873 3444443 111 223789999999999 5688
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.|++| |.+. ..++++..+...... ......+++|+|||+|.+|+|+|..+++.+.+ |+++.|.+.+ +|
T Consensus 117 ~p~i~---g~~~--~~v~~~~~~~~~~~~-~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~-----Vtlv~~~~~~-l~ 184 (452)
T 3oc4_A 117 STQIR---GSQT--EKLLKYKFLSGALAA-VPLLENSQTVAVIGAGPIGMEAIDFLVKMKKT-----VHVFESLENL-LP 184 (452)
T ss_dssp CCCCB---TTTC--TTEEEGGGCC----C-CHHHHTCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSSS-ST
T ss_pred CCCCC---CCCC--CCEEEeCCHHHHHHH-HHHHhcCCEEEEECCCHHHHHHHHHHHhCCCe-----EEEEEccCcc-cc
Confidence 88888 6542 235665554332100 01234679999999999999999999998764 9999998763 22
Q ss_pred C-cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 241 H-YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 241 ~-~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
. .+ . .
T Consensus 185 ~~~d-------~----~--------------------------------------------------------------- 190 (452)
T 3oc4_A 185 KYFD-------K----E--------------------------------------------------------------- 190 (452)
T ss_dssp TTCC-------H----H---------------------------------------------------------------
T ss_pred ccCC-------H----H---------------------------------------------------------------
Confidence 2 11 0 0
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEe--CCc--EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFW--KGG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
+.+.+.+.+++.+|+++.+. +.+++ +++ |.+++| ++++|.||+|||++++..+++. . +..++++.+
T Consensus 191 --~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~----~--~~~~~~g~i 261 (452)
T 3oc4_A 191 --MVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDK----K--IQRNLDQTI 261 (452)
T ss_dssp --HHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCT----T--SCBCTTSCB
T ss_pred --HHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHh----h--hccCCCCCE
Confidence 00111234566778888865 77776 333 556666 8999999999999999765321 1 112344445
Q ss_pred cceeeecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCC
Q 010421 395 PLYRGTIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 437 (511)
.+...+ .++.||+|++|..... .....+..|++.+|..+.|.
T Consensus 262 ~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~ 314 (452)
T 3oc4_A 262 AVDAYL-QTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEK 314 (452)
T ss_dssp CCCTTC-BCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSC
T ss_pred EECcCc-cCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCC
Confidence 554433 3578999999976543 24568999999999998875
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=245.76 Aligned_cols=298 Identities=16% Similarity=0.168 Sum_probs=192.1
Q ss_pred CeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++|+|||||++|+++|..| . +.+|+|||+++.++ |..+.+ | +.... ........+.
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~-------~~~~~l--~---~~~~~--------~~~~~~~~~~ 61 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS-------FANCGL--P---YHISG--------EIAQRSALVL 61 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS-------BCGGGH--H---HHHTS--------SSCCGGGGBC
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc-------ccccCc--h---HHhcC--------CcCChHHhhc
Confidence 5899999999999999999 3 78999999988764 111110 0 00000 1111233445
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
++++.+.+++++ .++++++|++++.. .. .+++.+..++...++.||+||+|||+ .|.
T Consensus 62 ~~~~~~~~~~~i--~~~~~~~V~~id~~----------------~~--~v~~~~~~~g~~~~~~~d~lviAtG~---~p~ 118 (565)
T 3ntd_A 62 QTPESFKARFNV--EVRVKHEVVAIDRA----------------AK--LVTVRRLLDGSEYQESYDTLLLSPGA---API 118 (565)
T ss_dssp CCHHHHHHHHCC--EEETTEEEEEEETT----------------TT--EEEEEETTTCCEEEEECSEEEECCCE---EEC
T ss_pred cCHHHHHHhcCc--EEEECCEEEEEECC----------------CC--EEEEEecCCCCeEEEECCEEEECCCC---CCC
Confidence 667777888888 78899999999872 22 35555533334447899999999994 678
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhh-hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEA-ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
.|.+| |.+.. .+++........... ......+++|+|||+|.+|+|+|..|++.+.+ |+++.|++. ++
T Consensus 119 ~p~ip---G~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~-----Vtlv~~~~~-~l 187 (565)
T 3ntd_A 119 VPPIP---GVDNP--LTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIK-----TTLLELADQ-VM 187 (565)
T ss_dssp CCCCT---TCCST--TEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSS-SC
T ss_pred CCCCC---CCCCC--CEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCc-----EEEEEcCCc-cc
Confidence 88888 65432 233333322211000 00124678999999999999999999988754 999999875 33
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
|... ... ..
T Consensus 188 ~~~~-----------~~~----------------------------~~-------------------------------- 196 (565)
T 3ntd_A 188 TPVD-----------REM----------------------------AG-------------------------------- 196 (565)
T ss_dssp TTSC-----------HHH----------------------------HH--------------------------------
T ss_pred hhcC-----------HHH----------------------------HH--------------------------------
Confidence 3221 000 00
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeC--------------------C---cEEEcCCceeeccEEEEecCCCCcccc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWK--------------------G---GLEFEDNTKLEADVVILCTGYDGKKKL 375 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--------------------~---~v~~~dG~~~~~D~VI~aTG~~~~~~~ 375 (511)
.+.+.+++.+|+++.+. +.+++. + .+++.||+++++|.||+|||++++..+
T Consensus 197 -----~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l 271 (565)
T 3ntd_A 197 -----FAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQL 271 (565)
T ss_dssp -----HHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHH
T ss_pred -----HHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHH
Confidence 01123344456666553 555543 2 256788999999999999999998765
Q ss_pred cccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-------c----hhhhhHHHHHHHHHHHhcCCC
Q 010421 376 KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-------V----SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-------~----~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.+..+ +..++.+.+.+...+ .++.||+|++|.... . .....|..|++.+|..+.|+.
T Consensus 272 ~~~~g-----~~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 339 (565)
T 3ntd_A 272 ARDAG-----LAIGELGGIKVNAMM-QTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE 339 (565)
T ss_dssp HHHHT-----CCBCTTSSBCCCTTC-BCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHhCC-----cccCCCCCEEECCCc-ccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCC
Confidence 33111 111334444444433 357899999997642 1 235679999999999998753
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=240.08 Aligned_cols=305 Identities=16% Similarity=0.181 Sum_probs=198.0
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCc----cccCCCC-CCCCCCCCC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSD----YEFTDFP-WPNRDDPGF 73 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~ 73 (511)
+..+||+|||||++|+++|.+| .|++|+|+|++..+||+|... ..|...+..+... -.+..+. ++.. ...+
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~-~~~~ 119 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDM-TEKV 119 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCC-TTCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHH-Hhhh
Confidence 4468999999999999999999 899999999988899998641 1121111000000 0011111 2221 1334
Q ss_pred CChHHHHHHHHH-------HH-----HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 74 PSYTEILDYLES-------YA-----KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 74 ~~~~~~~~yl~~-------~~-----~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
++..++.+++.. .. ++.++ .+.++.+|..++. ++|.+. +.
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~--------------------~~v~~~-g~----- 171 (523)
T 1mo9_A 120 VGIKEVVDLFRAGRNGPHGIMNFQSKEQLNL--EYILNCPAKVIDN--------------------HTVEAA-GK----- 171 (523)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHTSCC--CEEESSCCEEEET--------------------TEEEET-TE-----
T ss_pred hhHHHHHHHHHhhhhhhhhhhhhcccccCCc--EEEEeeEEEEeeC--------------------CEEEEC-CE-----
Confidence 457777777653 33 55666 5665677776653 145553 21
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccC-ccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhc
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYC-KLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESN 220 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~-~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~ 220 (511)
.+.||+||+|||+ .|..|.+| |.+. . .++++.++. .+ ....+++|+|||+|.+|+|+|..+++.+
T Consensus 172 ~~~~d~lViATGs---~p~~p~i~---G~~~-~-~v~~~~~~~~~l------~~~~g~~vvViGgG~~g~E~A~~l~~~G 237 (523)
T 1mo9_A 172 VFKAKNLILAVGA---GPGTLDVP---GVNA-K-GVFDHATLVEEL------DYEPGSTVVVVGGSKTAVEYGCFFNATG 237 (523)
T ss_dssp EEEBSCEEECCCE---ECCCCCST---TTTS-B-TEEEHHHHHHHC------CSCCCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred EEEeCEEEECCCC---CCCCCCCC---Cccc-C-cEeeHHHHHHHH------HhcCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999994 67888888 6543 1 256666554 32 1234599999999999999999999887
Q ss_pred CCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcc
Q 010421 221 QGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLL 300 (511)
Q Consensus 221 ~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
.+ |+++.|.+. ++|... ...
T Consensus 238 ~~-----Vtlv~~~~~-~l~~~~-----------~~~------------------------------------------- 257 (523)
T 1mo9_A 238 RR-----TVMLVRTEP-LKLIKD-----------NET------------------------------------------- 257 (523)
T ss_dssp CE-----EEEECSSCT-TTTCCS-----------HHH-------------------------------------------
T ss_pred Ce-----EEEEEecCc-cccccc-----------HHH-------------------------------------------
Confidence 54 999999875 233211 000
Q ss_pred cCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc------EEEcCCc-eeeccEEEEecCCC
Q 010421 301 KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG------LEFEDNT-KLEADVVILCTGYD 370 (511)
Q Consensus 301 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~------v~~~dG~-~~~~D~VI~aTG~~ 370 (511)
...+.+.+++.+|+++.+. |.+++. ++ |+++||+ ++++|.||+|||++
T Consensus 258 ----------------------~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~ 315 (523)
T 1mo9_A 258 ----------------------RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315 (523)
T ss_dssp ----------------------HHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred ----------------------HHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence 0011123445567777664 667754 44 5677887 79999999999999
Q ss_pred Cccc-ccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 371 GKKK-LKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 371 ~~~~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
++.. +++..+ +..++++.+.+..++ .++.||+|++|..... ...+.+..|++.+|..+.|+
T Consensus 316 p~~~~~l~~~g-----l~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 378 (523)
T 1mo9_A 316 PRSAELAKILG-----LDLGPKGEVLVNEYL-QTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGE 378 (523)
T ss_dssp ECCHHHHHHHT-----CCBCTTSCBCCCTTS-BCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTC
T ss_pred cCCccCHHHcC-----CccCCCCCEEECCCC-ccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9975 332211 111233444444433 3578999999987653 44678999999999999874
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=238.77 Aligned_cols=309 Identities=16% Similarity=0.149 Sum_probs=193.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc-c--CCCcEEEc--------CCCCcCccccCC-CcCceeccCCCC----ccccCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL-R--HHNPVVFE--------ASDSIGGIWKSC-SYNSTKLQSHRS----DYEFTDFP 64 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l-~--g~~v~v~e--------~~~~~GG~w~~~-~~~~~~~~~~~~----~~~~~~~~ 64 (511)
|++.+||+|||||++|+++|..| . |++|+|+| +...+||+|... .+|...+..... ...+..+.
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g 83 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFG 83 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcC
Confidence 55568999999999999999999 5 89999999 357899998651 122211110000 00112222
Q ss_pred CCCCCCCC--CCChHHHHHHHHHHH-----------Hhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 65 WPNRDDPG--FPSYTEILDYLESYA-----------KHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 65 ~~~~~~~~--~~~~~~~~~yl~~~~-----------~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
+... .. .....++.++.+.+. ++. ++ .+..+ ++..++. ++|
T Consensus 84 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g-~~~~i~~--------------------~~v 138 (495)
T 2wpf_A 84 WEFD--GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGL--DFFLG-WGSLESK--------------------NVV 138 (495)
T ss_dssp EECC--GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTE--EEEES-EEEEEET--------------------TEE
T ss_pred cccC--CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--EEEEe-EEEEeeC--------------------CEE
Confidence 2110 01 223445555544433 233 44 44444 3544432 257
Q ss_pred EEEeCCC---CceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCC
Q 010421 131 AVQTHNS---NSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKK 207 (511)
Q Consensus 131 ~~~~~~~---~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~ 207 (511)
.+.+..+ .....+.||+||+|||+ .|..|.+| |.+ .++++.++..+. ..+++|+|||+|.
T Consensus 139 ~v~~~~~~~~~~~~~~~~d~lViATGs---~p~~p~i~---G~~----~~~~~~~~~~~~-------~~~~~vvViGgG~ 201 (495)
T 2wpf_A 139 VVRETADPKSAVKERLQADHILLATGS---WPQMPAIP---GIE----HCISSNEAFYLP-------EPPRRVLTVGGGF 201 (495)
T ss_dssp EEESSSSTTSCEEEEEEEEEEEECCCE---EECCCCCT---TGG----GCEEHHHHTTCS-------SCCSEEEEECSSH
T ss_pred EEeecCCccCCCCeEEEcCEEEEeCCC---CcCCCCCC---Ccc----ccccHHHHHhhh-------hcCCeEEEECCCH
Confidence 7763211 00127899999999994 57888888 653 256666665432 3578999999999
Q ss_pred CHHHHHHHHHHh---cCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHH
Q 010421 208 SAIDLAKECAES---NQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRG 284 (511)
Q Consensus 208 sg~d~a~~l~~~---~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (511)
+|+|+|..|++. +. +||++.|.+. ++|..+ . ..
T Consensus 202 ig~E~A~~l~~~~~~g~-----~Vtlv~~~~~-~l~~~d-------~----~~--------------------------- 237 (495)
T 2wpf_A 202 ISVEFAGIFNAYKPPGG-----KVTLCYRNNL-ILRGFD-------E----TI--------------------------- 237 (495)
T ss_dssp HHHHHHHHHHHHCCTTC-----EEEEEESSSS-SCTTSC-------H----HH---------------------------
T ss_pred HHHHHHHHHHhhCCCCC-----eEEEEEcCCc-cccccC-------H----HH---------------------------
Confidence 999999999998 65 4999999875 333321 0 00
Q ss_pred HHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEEcCCcee
Q 010421 285 VSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEFEDNTKL 358 (511)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~~dG~~~ 358 (511)
.+.+.+.+++.+|+++.+. |.+++.+ .|+++||+++
T Consensus 238 --------------------------------------~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i 279 (495)
T 2wpf_A 238 --------------------------------------REEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTL 279 (495)
T ss_dssp --------------------------------------HHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEE
T ss_pred --------------------------------------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEE
Confidence 0011133455567887774 7777643 3678899999
Q ss_pred eccEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 359 EADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 359 ~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
++|.||+|||++++...+. ..-.++..++++.+.+...+ .++.||+|++|.... +...+.+..|++.+|..+.|.
T Consensus 280 ~~D~vv~a~G~~p~~~~L~---l~~~gl~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 355 (495)
T 2wpf_A 280 DVDVVMMAIGRIPRTNDLQ---LGNVGVKLTPKGGVQVDEFS-RTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN 355 (495)
T ss_dssp EESEEEECSCEEECCGGGT---GGGTTCCBCTTSSBCCCTTC-BCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred EcCEEEECCCCcccccccc---hhhcCccCCCCCCEEECCCC-ccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999875211 01011111334445454433 357899999998765 334678999999999988764
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=233.24 Aligned_cols=309 Identities=12% Similarity=0.087 Sum_probs=193.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCC----ccccCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRS----DYEFTDFPWPNRDDPGF 73 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 73 (511)
|+..+||+|||||++|+++|..| .|++|+|+|+++.+||+|... ..|...+..... ...+..+.++.. ...
T Consensus 3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~--~~~ 80 (482)
T 1ojt_A 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYP--EPE 80 (482)
T ss_dssp SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCC--CCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccC--CCc
Confidence 54568999999999999999999 899999999998999987541 111110000000 000111111110 111
Q ss_pred CChHHHHH-----------HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC-------
Q 010421 74 PSYTEILD-----------YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH------- 135 (511)
Q Consensus 74 ~~~~~~~~-----------yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------- 135 (511)
.....+.. .+...+++.++ .++.++.+. ++ .+.+.|...++
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~------------------~~~v~v~~~~g~~~~~~~ 139 (482)
T 1ojt_A 81 LDIDMLRAYKDGVVSRLTGGLAGMAKSRKV--DVIQGDGQF-LD------------------PHHLEVSLTAGDAYEQAA 139 (482)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEEEEE-EE------------------TTEEEEEEEEEEETTEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEeeEEEE-cc------------------CCEEEEEecCCccccccc
Confidence 22223322 23445566676 677766543 22 33455554443
Q ss_pred CCCceeEEEeCEEEEeecccCCCCCCCC-CCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHH
Q 010421 136 NSNSIQRYGFEFLVVCTGKYGDVPIIPA-FPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAK 214 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~~~p~~p~-~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~ 214 (511)
.+++..++.||+||+|||.. |..|+ ++ . + ..++++.+...+. ..+++|+|||+|.+|+|+|.
T Consensus 140 ~~g~~~~i~ad~lViAtGs~---p~~~~~i~---~-~---~~v~~~~~~~~~~-------~~~~~vvViGgG~ig~E~A~ 202 (482)
T 1ojt_A 140 PTGEKKIVAFKNCIIAAGSR---VTKLPFIP---E-D---PRIIDSSGALALK-------EVPGKLLIIGGGIIGLEMGT 202 (482)
T ss_dssp EEEEEEEEEEEEEEECCCEE---ECCCSSCC---C-C---TTEECHHHHTTCC-------CCCSEEEEESCSHHHHHHHH
T ss_pred ccCcceEEEcCEEEECCCCC---CCCCCCCC---c-c---CcEEcHHHHhccc-------ccCCeEEEECCCHHHHHHHH
Confidence 11223478999999999964 56655 43 1 1 1366666654422 24799999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 010421 215 ECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLL 294 (511)
Q Consensus 215 ~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (511)
.|++.+.+ ||++.|.+. ++|..+ ..
T Consensus 203 ~l~~~G~~-----Vtlv~~~~~-~l~~~~-----------~~-------------------------------------- 227 (482)
T 1ojt_A 203 VYSTLGSR-----LDVVEMMDG-LMQGAD-----------RD-------------------------------------- 227 (482)
T ss_dssp HHHHHTCE-----EEEECSSSS-SSTTSC-----------HH--------------------------------------
T ss_pred HHHHcCCe-----EEEEEECCc-cccccC-----------HH--------------------------------------
Confidence 99998764 999999875 333221 00
Q ss_pred ccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcC----CceeeccEEEE
Q 010421 295 WKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFED----NTKLEADVVIL 365 (511)
Q Consensus 295 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~d----G~~~~~D~VI~ 365 (511)
+.+.+.+.+++.+|+++.+. +.+++.+ + |+++| |+++++|.||+
T Consensus 228 ---------------------------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~ 280 (482)
T 1ojt_A 228 ---------------------------LVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLV 280 (482)
T ss_dssp ---------------------------HHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEE
T ss_pred ---------------------------HHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEE
Confidence 00111234556678888875 7777643 2 66777 77899999999
Q ss_pred ecCCCCccccc--ccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 366 CTGYDGKKKLK--AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 366 aTG~~~~~~~~--~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
|||++|+..++ +..+ +..+.++.+.+..++ .++.||+|++|..... ...+.+..|++.+|..+.|+
T Consensus 281 a~G~~p~~~~l~~~~~g-----l~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 349 (482)
T 1ojt_A 281 AAGRAPNGKLISAEKAG-----VAVTDRGFIEVDKQM-RTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGH 349 (482)
T ss_dssp CCCEEECGGGTTGGGTT-----CCCCTTSCCCCCTTS-BCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCcCCCCCChhhcC-----ceeCCCCCEeeCCCc-ccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCC
Confidence 99999997652 2111 111233445454433 3578999999987653 34578999999999999874
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-26 Score=221.91 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=121.0
Q ss_pred CC-CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 1 MA-NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 1 m~-~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
|+ +.+||+||||||||++||.+| .|++|+|||+ ..+||++.... + ...++ ........
T Consensus 2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~~~~---~-------i~~~p--------~~~~~~~~ 62 (312)
T 4gcm_A 2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMANTE---E-------VENFP--------GFEMITGP 62 (312)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGGGCS---C-------BCCST--------TCSSBCHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeeeccc---c-------cCCcC--------CccccchH
Confidence 65 369999999999999999999 8999999998 56888765310 0 00111 12234566
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD 157 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~ 157 (511)
++.........++.. .+..+..+..... ... .+...++. ++.||+||+|||+
T Consensus 63 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----------------~~~-~~~~~~~~-----~~~~d~liiAtGs--- 114 (312)
T 4gcm_A 63 DLSTKMFEHAKKFGA--VYQYGDIKSVEDK-----------------GEY-KVINFGNK-----ELTAKAVIIATGA--- 114 (312)
T ss_dssp HHHHHHHHHHHHTTC--EEEECCCCEEEEC-----------------SSC-EEEECSSC-----EEEEEEEEECCCE---
T ss_pred HHHHHHHHHHhhccc--cccceeeeeeeee-----------------ecc-eeeccCCe-----EEEeceeEEcccC---
Confidence 777666666666655 4555544444332 111 23333333 7999999999994
Q ss_pred CCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+.|++| |.+.+.++.++.....+ .....+|+|+|||+|.+|+|+|..|++.+.+ ||++.|++.
T Consensus 115 ~~~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~-----Vtlv~~~~~ 179 (312)
T 4gcm_A 115 EYKKIGVP---GEQELGGRGVSYCAVCD------GAFFKNKRLFVIGGGDSAVEEGTFLTKFADK-----VTIVHRRDE 179 (312)
T ss_dssp EECCCCCT---TTTTTBTTTEESCHHHH------GGGGTTCEEEEECCSHHHHHHHHHHTTTCSE-----EEEECSSSS
T ss_pred ccCcCCCC---ChhhhCCccEEeeeccC------ccccCCCEEEEECCCHHHHHHHHHHHhcCCE-----EEEEecccc
Confidence 68888888 77777665555544433 2346789999999999999999999888754 999999875
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-27 Score=239.22 Aligned_cols=289 Identities=12% Similarity=0.139 Sum_probs=183.3
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
++|+|||||++|+++|..| .|. +|+|||+++..+ |....+ ++..+... . .+ .. +.
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~-------y~~~~l--~~~~l~~~-~-~~----~~------~~ 60 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP-------YQRPPL--SKAYLKSG-G-DP----NS------LM 60 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS-------BCSGGG--GTGGGGSC-C-CT----TS------SB
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------CCCccC--CHHHHCCC-C-CH----HH------cc
Confidence 6899999999999999999 676 899999987552 211111 11111000 0 00 01 11
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+...+.+++++ .++. ++|+.++.. . ..|++.++. ++.||+||+|||. .|+
T Consensus 61 ~~~~~~~~~~~i--~~~~-~~v~~id~~----------------~--~~v~~~~g~-----~~~~d~lvlAtG~---~p~ 111 (404)
T 3fg2_P 61 FRPEKFFQDQAI--ELIS-DRMVSIDRE----------------G--RKLLLASGT-----AIEYGHLVLATGA---RNR 111 (404)
T ss_dssp SSCHHHHHHTTE--EEEC-CCEEEEETT----------------T--TEEEESSSC-----EEECSEEEECCCE---EEC
T ss_pred CCCHHHHHhCCC--EEEE-EEEEEEECC----------------C--CEEEECCCC-----EEECCEEEEeeCC---Ccc
Confidence 111223345666 6666 889988862 1 257766654 7899999999994 577
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.|.+| |.+. . .+++.....+... .......+++|+|||+|.+|+|+|..+.+.+.+ |+++.+.+.++..
T Consensus 112 ~~~i~---g~~~-~-~v~~~~~~~d~~~-l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~-----Vtvv~~~~~~~~~ 180 (404)
T 3fg2_P 112 MLDVP---NASL-P-DVLYLRTLDESEV-LRQRMPDKKHVVVIGAGFIGLEFAATARAKGLE-----VDVVELAPRVMAR 180 (404)
T ss_dssp CCCST---TTTS-T-TEECCSSHHHHHH-HHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSSTTTT
T ss_pred CCCCC---CCCC-C-cEEEECCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCE-----EEEEeCCCcchhh
Confidence 88888 5431 1 2332222211100 012234689999999999999999999988754 9999998753211
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
... ..
T Consensus 181 ~~~-----------~~---------------------------------------------------------------- 185 (404)
T 3fg2_P 181 VVT-----------PE---------------------------------------------------------------- 185 (404)
T ss_dssp TSC-----------HH----------------------------------------------------------------
T ss_pred ccC-----------HH----------------------------------------------------------------
Confidence 110 00
Q ss_pred ccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 321 IMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
+.+.+.+.+++.+|+++.+. |.+++.+ +|+++||+++++|.||+|||++++..+.+..+... + + ++
T Consensus 186 -~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~-----~-~-Gi 257 (404)
T 3fg2_P 186 -ISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPT-----A-A-GI 257 (404)
T ss_dssp -HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCB-----S-S-SE
T ss_pred -HHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCC-----C-C-CE
Confidence 00111234556678888774 7777653 48889999999999999999999976543222211 1 2 23
Q ss_pred cceeeecCCCCCceEEEeecccch-----------hhhhHHHHHHHHHHHhcCCC
Q 010421 395 PLYRGTIHPLIPNMAFVGYIESVS-----------NLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~~~-----------~~~~~e~qa~~~a~~l~g~~ 438 (511)
.+...+ .++.||+|++|...... .+..+..||+.+|+.+.|+.
T Consensus 258 ~vd~~~-~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 311 (404)
T 3fg2_P 258 IVDQQL-LTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA 311 (404)
T ss_dssp EECTTS-BCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC
T ss_pred EECCCc-ccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC
Confidence 333322 35789999999765422 25789999999999998864
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=237.30 Aligned_cols=294 Identities=19% Similarity=0.231 Sum_probs=182.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCCh
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
|+ .+||+|||||++|+++|..| . +.+|+|||+++.+++.... .|. . .......
T Consensus 1 M~-~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~---------~p~------------~-~~~~~~~ 57 (449)
T 3kd9_A 1 MS-LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCG---------IPY------------V-VEGLSTP 57 (449)
T ss_dssp -C-CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--------------------------------------
T ss_pred CC-cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcC---------Ccc------------c-cCCCCCH
Confidence 53 57999999999999999999 3 7899999998766422110 000 0 0111122
Q ss_pred HHHHHH-HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 77 TEILDY-LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 77 ~~~~~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.++..+ .+.+++++++ .++++++|++++. ..+.|.+.++ ..++.||+||+|||.
T Consensus 58 ~~~~~~~~~~~~~~~gi--~v~~~~~v~~i~~------------------~~~~v~~~~g----~~~~~~d~lviAtG~- 112 (449)
T 3kd9_A 58 DKLMYYPPEVFIKKRGI--DLHLNAEVIEVDT------------------GYVRVRENGG----EKSYEWDYLVFANGA- 112 (449)
T ss_dssp --------CTHHHHTTC--EEETTCEEEEECS------------------SEEEEECSSS----EEEEECSEEEECCCE-
T ss_pred HHhhhcCHHHHHHhcCc--EEEecCEEEEEec------------------CCCEEEECCc----eEEEEcCEEEECCCC-
Confidence 233332 2444567888 8899999998865 2245543222 236899999999994
Q ss_pred CCCCCCCCCCCCCCCCcccceEEeccccCccch-hhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 156 GDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDK-EAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 156 ~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~-~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.|..|.+| |.+. . .++.......... ......+.+++|+|||+|.+|+|+|..+++.+.+ |+++.|+
T Consensus 113 --~p~~p~i~---G~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~-----Vtlv~~~ 180 (449)
T 3kd9_A 113 --SPQVPAIE---GVNL-K-GVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKN-----VTMIVRG 180 (449)
T ss_dssp --EECCCSCB---TTTS-T-TEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESS
T ss_pred --CCCCCCCC---CCCC-C-CEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCe-----EEEEEcC
Confidence 67888888 5442 1 1332222211100 0011223789999999999999999999998754 9999998
Q ss_pred CceeecC-cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccc
Q 010421 235 THWTVPH-YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEED 313 (511)
Q Consensus 235 ~~~~~p~-~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 313 (511)
+.+ ++. .+ ... .
T Consensus 181 ~~~-l~~~~~-----------~~~----------------------------~--------------------------- 193 (449)
T 3kd9_A 181 ERV-LRRSFD-----------KEV----------------------------T--------------------------- 193 (449)
T ss_dssp SST-TTTTSC-----------HHH----------------------------H---------------------------
T ss_pred Ccc-chhhcC-----------HHH----------------------------H---------------------------
Confidence 753 222 11 000 0
Q ss_pred cccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc---EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccC
Q 010421 314 YASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG---LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEH 389 (511)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~---v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+.+.+.+++. |+++.+. +.+++.++ .++.||+++++|.||+|||++++..+.+.++.. .+
T Consensus 194 ----------~~l~~~l~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~-----~~ 257 (449)
T 3kd9_A 194 ----------DILEEKLKKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVR-----IG 257 (449)
T ss_dssp ----------HHHHHHHTTT-SEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECCHHHHHTTCC-----BC
T ss_pred ----------HHHHHHHHhC-cEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCCcc-----CC
Confidence 0111234455 6777664 67776553 456788889999999999999987654322221 12
Q ss_pred CCCcccceeeecCCCCCceEEEeeccc-----------chhhhhHHHHHHHHHHHhcCCC
Q 010421 390 PSGLLPLYRGTIHPLIPNMAFVGYIES-----------VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 390 ~~~~~~ly~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+.+.+.+... +.++.||+|++|.... +...+.+..|++.+|..+.|+.
T Consensus 258 ~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~ 316 (449)
T 3kd9_A 258 ETGAIWTNEK-MQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKE 316 (449)
T ss_dssp TTSSBCCCTT-CBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEECCC-CccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCC
Confidence 3344444433 2357899999997642 1345689999999999998753
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=236.98 Aligned_cols=308 Identities=15% Similarity=0.126 Sum_probs=188.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc-----cCCCCCCCCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE-----FTDFPWPNRDDPGFPS 75 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 75 (511)
.+||+|||||++|+++|..| .|++|+|+|+++.+||+|... ..|...+......+. +..+.++.. ......
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGG-EGVTMD 80 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECG-GGCEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccC-CCCccC
Confidence 47999999999999999999 899999999998999998641 111110000000000 110111100 000111
Q ss_pred hHHH-----------HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 76 YTEI-----------LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 76 ~~~~-----------~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
..++ ...+....++.++ .++.++.+ .++ .+.++|...++ ...++.
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~~-~i~------------------~~~~~v~~~~G---~~~~~~ 136 (468)
T 2qae_A 81 SAKMQQQKERAVKGLTGGVEYLFKKNKV--TYYKGEGS-FET------------------AHSIRVNGLDG---KQEMLE 136 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEE-EEE------------------TTEEEEEETTS---CEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE-Eee------------------CCEEEEEecCC---ceEEEE
Confidence 2222 2233455566677 66666543 343 23344543222 223789
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCC
Q 010421 145 FEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPE 224 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 224 (511)
||+||+|||. .|..|+++ |.+. . .++++.++..+. ..+++|+|||+|.+|+|+|..+++.+.+
T Consensus 137 ~d~lviAtG~---~p~~p~~~---g~~~-~-~v~t~~~~~~~~-------~~~~~vvViGgG~~g~E~A~~l~~~g~~-- 199 (468)
T 2qae_A 137 TKKTIIATGS---EPTELPFL---PFDE-K-VVLSSTGALALP-------RVPKTMVVIGGGVIGLELGSVWARLGAE-- 199 (468)
T ss_dssp EEEEEECCCE---EECCBTTB---CCCS-S-SEECHHHHHTCS-------SCCSEEEEECCSHHHHHHHHHHHHTTCE--
T ss_pred cCEEEECCCC---CcCCCCCC---CCCc-C-ceechHHHhhcc-------cCCceEEEECCCHHHHHHHHHHHHhCCE--
Confidence 9999999995 57777777 5432 1 366665554321 3579999999999999999999988754
Q ss_pred CCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCC
Q 010421 225 GQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304 (511)
Q Consensus 225 ~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (511)
|+++.|.+. ++|..+ ...
T Consensus 200 ---Vtlv~~~~~-~l~~~d-----------~~~----------------------------------------------- 217 (468)
T 2qae_A 200 ---VTVVEFAPR-CAPTLD-----------EDV----------------------------------------------- 217 (468)
T ss_dssp ---EEEECSSSS-SSTTSC-----------HHH-----------------------------------------------
T ss_pred ---EEEEecCCc-ccccCC-----------HHH-----------------------------------------------
Confidence 999999875 333321 000
Q ss_pred CCCCccccccccccccccCCchhhhh-ccCeEEEEeCc-eeEEeCCc----EEEc--CC--ceeeccEEEEecCCCCccc
Q 010421 305 KPDHPFEEDYASCQMAIMPEGFFSEA-EKGKIVFKRAS-KWWFWKGG----LEFE--DN--TKLEADVVILCTGYDGKKK 374 (511)
Q Consensus 305 ~p~~~~~~~~~~~~~~~~~~~~~~~l-~~g~v~v~~~~-i~~~~~~~----v~~~--dG--~~~~~D~VI~aTG~~~~~~ 374 (511)
.+.+.+.+ ++.+|+++.+. +.+++.++ |.++ || +++++|.||+|||++++..
T Consensus 218 ------------------~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 279 (468)
T 2qae_A 218 ------------------TNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTG 279 (468)
T ss_dssp ------------------HHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCT
T ss_pred ------------------HHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCC
Confidence 00111334 55567777764 77776432 4554 77 5699999999999999876
Q ss_pred ccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc--chhhhhHHHHHHHHHHHhcCC
Q 010421 375 LKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES--VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~~a~~l~g~ 437 (511)
++. ..-.++..++.+.+.+..++ .++.||+|++|.... +...+.+..|++.+|..+.|+
T Consensus 280 ~l~---l~~~gl~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 340 (468)
T 2qae_A 280 GLG---LDKINVAKNERGFVKIGDHF-ETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGK 340 (468)
T ss_dssp TSC---HHHHTCCBCTTSCBCCCTTS-BCSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCC---chhcCCccCCCCCEeECCCc-ccCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCC
Confidence 421 01011111233445454443 357899999998766 345678999999999999875
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-27 Score=234.99 Aligned_cols=282 Identities=15% Similarity=0.129 Sum_probs=184.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
..||+|||||++|+++|..| .| +|+|+|+++..+ +.. +.+. . ..... ...+++..
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--~~~---~~l~----~---~~~g~----------~~~~~~~~ 64 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--YSK---PMLS----H---YIAGF----------IPRNRLFP 64 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--CCS---TTHH----H---HHTTS----------SCGGGGCS
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--ccc---chhH----H---HHhCC----------CCHHHhcc
Confidence 36999999999999999999 77 999999976542 111 1000 0 00000 01111212
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+...+.+++++ .++++++|+.++.. .++|+ .++. ++.||+||+|||+ .|+.
T Consensus 65 ~~~~~~~~~~v--~~~~g~~v~~id~~------------------~~~V~-~~g~-----~~~~d~lViATGs---~p~~ 115 (367)
T 1xhc_A 65 YSLDWYRKRGI--EIRLAEEAKLIDRG------------------RKVVI-TEKG-----EVPYDTLVLATGA---RARE 115 (367)
T ss_dssp SCHHHHHHHTE--EEECSCCEEEEETT------------------TTEEE-ESSC-----EEECSEEEECCCE---EECC
T ss_pred CCHHHHHhCCc--EEEECCEEEEEECC------------------CCEEE-ECCc-----EEECCEEEECCCC---CCCC
Confidence 22334456777 78888889988862 24566 4443 7999999999994 6788
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|.+| |.+ .++++..+.+.... ......+++|+|||+|.+|+|+|..|++.+.+ ||++.|.+. ++|
T Consensus 116 p~i~---G~~----~v~~~~~~~~~~~l-~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~-----Vtlv~~~~~-~l~- 180 (367)
T 1xhc_A 116 PQIK---GKE----YLLTLRTIFDADRI-KESIENSGEAIIIGGGFIGLELAGNLAEAGYH-----VKLIHRGAM-FLG- 180 (367)
T ss_dssp CCSB---TGG----GEECCCSHHHHHHH-HHHHHHHSEEEEEECSHHHHHHHHHHHHTTCE-----EEEECSSSC-CTT-
T ss_pred CCCC---CcC----CEEEEcCHHHHHHH-HHHhhcCCcEEEECCCHHHHHHHHHHHhCCCE-----EEEEeCCCe-ecc-
Confidence 8888 622 35554443321100 00111458999999999999999999988754 999999874 222
Q ss_pred cccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccc
Q 010421 242 YRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAI 321 (511)
Q Consensus 242 ~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 321 (511)
.+ ....
T Consensus 181 ~~-----------~~~~--------------------------------------------------------------- 186 (367)
T 1xhc_A 181 LD-----------EELS--------------------------------------------------------------- 186 (367)
T ss_dssp CC-----------HHHH---------------------------------------------------------------
T ss_pred CC-----------HHHH---------------------------------------------------------------
Confidence 11 0000
Q ss_pred cCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeee
Q 010421 322 MPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGT 400 (511)
Q Consensus 322 ~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~ 400 (511)
+.+.+.+++.+|+++.+. +.+++.++|+++||+ +++|.||+|||++++..+.+.++... + +.+.+...+
T Consensus 187 --~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~-----~--~gi~Vd~~~ 256 (367)
T 1xhc_A 187 --NMIKDMLEETGVKFFLNSELLEANEEGVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHT-----G--RGILIDDNF 256 (367)
T ss_dssp --HHHHHHHHHTTEEEECSCCEEEECSSEEEETTEE-EECSCEEEECCEEECCHHHHHTTCCB-----S--SSEECCTTS
T ss_pred --HHHHHHHHHCCCEEEcCCEEEEEEeeEEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCC-----C--CCEEECCCc
Confidence 011134556678888874 888887889999998 99999999999999976543222111 1 123333322
Q ss_pred cCCCCCceEEEeeccc-----chhhhhHHHHHHHHHHHhcCC
Q 010421 401 IHPLIPNMAFVGYIES-----VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 401 ~~~~~pnl~~iG~~~~-----~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.++.||+|++|.... ...++.+..|++.+|..+.|.
T Consensus 257 -~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~ 297 (367)
T 1xhc_A 257 -RTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 297 (367)
T ss_dssp -BCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred -ccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 357899999997743 234678999999999999875
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=239.24 Aligned_cols=309 Identities=17% Similarity=0.134 Sum_probs=182.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccc-----cCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYE-----FTDFPWPNRDDPGFP 74 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 74 (511)
+.+||+|||||++|+++|..| .|++|+|+|+++.+||+|... .+|...+..+...+. +..+.++.. ....
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~--~~~~ 101 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVA--NPKL 101 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECC--CCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccC--CCcc
Confidence 458999999999999999999 899999999999999998751 222221111111110 111111110 1111
Q ss_pred ChHHHHHH-----------HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEE
Q 010421 75 SYTEILDY-----------LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY 143 (511)
Q Consensus 75 ~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 143 (511)
....+..+ +....++.++ .+..+. +..++ .+.+.| ... +++..++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~~------------------~~~~~v--~~~-~g~~~~~ 157 (491)
T 3urh_A 102 NLQKMMAHKDATVKSNVDGVSFLFKKNKI--DGFQGT-GKVLG------------------QGKVSV--TNE-KGEEQVL 157 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESE-EEECS------------------SSEEEE--ECT-TSCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEec------------------CCEEEE--EeC-CCceEEE
Confidence 22233222 2223334444 333332 22111 233344 332 2334479
Q ss_pred EeCEEEEeecccCCCCCCCCCCCCCCCCc-ccce-EEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 144 GFEFLVVCTGKYGDVPIIPAFPNNKGPEV-FEGQ-VLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 144 ~~d~vVlAtG~~~~~p~~p~~~~~~g~~~-~~g~-~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
.||+||+|||.. | |.+| |.+. +.+. ++++.+... ....+++|+|||+|.+|+|+|..|++.+.
T Consensus 158 ~~d~lViATGs~---p--~~ip---g~~~~~~~~~~~~~~~~~~-------~~~~~~~vvViGgG~~g~E~A~~l~~~g~ 222 (491)
T 3urh_A 158 EAKNVVIATGSD---V--AGIP---GVEVAFDEKTIVSSTGALA-------LEKVPASMIVVGGGVIGLELGSVWARLGA 222 (491)
T ss_dssp ECSEEEECCCEE---C--CCBT---TBCCCCCSSSEECHHHHTS-------CSSCCSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred EeCEEEEccCCC---C--CCCC---CcccccCCeeEEehhHhhh-------hhhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 999999999964 3 2345 4432 3333 333333332 22467999999999999999999999876
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ |+++.|.+.. +|..+ ...
T Consensus 223 ~-----Vtlv~~~~~~-l~~~d-----------~~~-------------------------------------------- 241 (491)
T 3urh_A 223 K-----VTVVEFLDTI-LGGMD-----------GEV-------------------------------------------- 241 (491)
T ss_dssp E-----EEEECSSSSS-SSSSC-----------HHH--------------------------------------------
T ss_pred E-----EEEEeccccc-cccCC-----------HHH--------------------------------------------
Confidence 4 9999998752 23221 000
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcC---C--ceeeccEEEEecCCCC
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFED---N--TKLEADVVILCTGYDG 371 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~d---G--~~~~~D~VI~aTG~~~ 371 (511)
.+.+.+.+++.+|+++.+. +.+++.+ + |.+.+ | +++++|.||+|||++|
T Consensus 242 ---------------------~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p 300 (491)
T 3urh_A 242 ---------------------AKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKP 300 (491)
T ss_dssp ---------------------HHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEE
T ss_pred ---------------------HHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCcc
Confidence 0011233455567777764 6666543 2 55553 5 4699999999999999
Q ss_pred cccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCCC
Q 010421 372 KKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+..++. ..-.++..++++.+.+...+ .++.||||++|.... +...+.+..|++.+|..+.|+.
T Consensus 301 ~~~~l~---l~~~g~~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 364 (491)
T 3urh_A 301 STDGLG---LAKAGVVLDSRGRVEIDRHF-QTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA 364 (491)
T ss_dssp CCTTSC---HHHHTCCBCTTSCBCCCTTC-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCccC---chhcCceECCCCCEeECCCC-CCCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 876421 11111222334445554443 367899999998763 4456789999999999998753
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-26 Score=233.42 Aligned_cols=302 Identities=17% Similarity=0.176 Sum_probs=186.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCC----ccccCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRS----DYEFTDFPWPNRDDPGF 73 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 73 (511)
|++.+||+|||||++|+++|.+| .|++|+|||++ .+||+|... ..|...+..... ......+.++.. ...
T Consensus 1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~--~~~ 77 (463)
T 2r9z_A 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQAS--GGT 77 (463)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC-----
T ss_pred CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccC--CCC
Confidence 66679999999999999999999 89999999997 789998641 112111000000 000111111110 111
Q ss_pred CChHHHHHHHHHH-----------HHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 74 PSYTEILDYLESY-----------AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 74 ~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
....++.++.+.+ .++.++ .+..+ ++..++. ++|.+ ++. +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~~--------------------~~v~~-~g~-----~ 128 (463)
T 2r9z_A 78 LDWPRLVAGRDRYIGAINSFWDGYVERLGI--TRVDG-HARFVDA--------------------HTIEV-EGQ-----R 128 (463)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CEEEEET--------------------TEEEE-TTE-----E
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEe-EEEEccC--------------------CEEEE-CCE-----E
Confidence 2333444333332 234455 44444 3433332 24666 322 7
Q ss_pred EEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC
Q 010421 143 YGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 143 ~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
+.||+||+|||. .|..|.+| |.+ .++++.++..+ ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 129 ~~~d~lviAtGs---~p~~p~i~---G~~----~~~~~~~~~~~-------~~~~~~vvVvGgG~~g~e~A~~l~~~G~~ 191 (463)
T 2r9z_A 129 LSADHIVIATGG---RPIVPRLP---GAE----LGITSDGFFAL-------QQQPKRVAIIGAGYIGIELAGLLRSFGSE 191 (463)
T ss_dssp EEEEEEEECCCE---EECCCSCT---TGG----GSBCHHHHHHC-------SSCCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred EEcCEEEECCCC---CCCCCCCC---Ccc----ceecHHHHhhh-------hccCCEEEEECCCHHHHHHHHHHHhcCCE
Confidence 899999999994 57788888 653 24455544332 13478999999999999999999988754
Q ss_pred CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccC
Q 010421 223 PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKY 302 (511)
Q Consensus 223 ~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
|+++.|++.. ++..+ . ...
T Consensus 192 -----Vtlv~~~~~~-l~~~~-------~----~~~-------------------------------------------- 210 (463)
T 2r9z_A 192 -----VTVVALEDRL-LFQFD-------P----LLS-------------------------------------------- 210 (463)
T ss_dssp -----EEEECSSSSS-STTSC-------H----HHH--------------------------------------------
T ss_pred -----EEEEEcCCcc-ccccC-------H----HHH--------------------------------------------
Confidence 9999998652 22211 0 000
Q ss_pred CCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEcCCc-eeeccEEEEecCCCCccccc
Q 010421 303 GLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFEDNT-KLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 303 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~dG~-~~~~D~VI~aTG~~~~~~~~ 376 (511)
+.+.+.+++.+|+++.+. +.+++.+ .|+++||+ ++++|.||+|||++++...+
T Consensus 211 ---------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l 269 (463)
T 2r9z_A 211 ---------------------ATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDL 269 (463)
T ss_dssp ---------------------HHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTS
T ss_pred ---------------------HHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCC
Confidence 011123445567777764 7777542 37788999 89999999999999987521
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
...-.++..++++.+.+...+ .++.||+|++|.... +...+.+..|++.+|..+.|.
T Consensus 270 ---~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 327 (463)
T 2r9z_A 270 ---GLEAAGIEVQSNGMVPTDAYQ-NTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDG 327 (463)
T ss_dssp ---CHHHHTCCCCTTSCCCCCTTS-BCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred ---CchhcCCccCCCCCEeECCCC-ccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 100011111334445454443 467899999998764 334678999999999988764
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-27 Score=237.46 Aligned_cols=287 Identities=13% Similarity=0.095 Sum_probs=184.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
+.+||+|||||++|+++|..| .|. +|+|+|+++.++ |..+. .++....- .. ++ ..
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~-------~~~~~--~~~~~~~~-~~--~~---~~------ 64 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP-------YDRPP--LSKDFMAH-GD--AE---KI------ 64 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC-------BCSGG--GGTHHHHH-CC--GG---GS------
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc-------ccCCC--CCHHHhCC-Cc--hh---hh------
Confidence 357999999999999999999 666 599999987552 11110 00000000 00 00 00
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+++ .++++++ .++++++|+.++.. .++|++.++. ++.||+||+|||. .
T Consensus 65 ---~~~-~~~~~~v--~~~~~~~v~~i~~~------------------~~~v~~~~g~-----~~~~d~lviAtG~---~ 112 (408)
T 2gqw_A 65 ---RLD-CKRAPEV--EWLLGVTAQSFDPQ------------------AHTVALSDGR-----TLPYGTLVLATGA---A 112 (408)
T ss_dssp ---BCC-CTTSCSC--EEEETCCEEEEETT------------------TTEEEETTSC-----EEECSEEEECCCE---E
T ss_pred ---hHH-HHHHCCC--EEEcCCEEEEEECC------------------CCEEEECCCC-----EEECCEEEECCCC---C
Confidence 001 2234566 78888889998852 2467776553 7899999999994 5
Q ss_pred CCCCCC-CCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 159 PIIPAF-PNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 159 p~~p~~-~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
|..|.+ | |.+ . .+++.....+... .......+++|+|||+|.+|+|+|..|++.+.+ ||++.|.+.
T Consensus 113 ~~~~~i~~---G~~--~-~v~~~~~~~~~~~-l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~-----Vtlv~~~~~- 179 (408)
T 2gqw_A 113 PRALPTLQ---GAT--M-PVHTLRTLEDARR-IQAGLRPQSRLLIVGGGVIGLELAATARTAGVH-----VSLVETQPR- 179 (408)
T ss_dssp ECCCGGGT---TCS--S-CEEECCSHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSS-
T ss_pred CCCCCccC---CCC--C-cEEEECCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCE-----EEEEEeCCc-
Confidence 788887 8 654 2 2444333222110 001223589999999999999999999988754 999999875
Q ss_pred eecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccc
Q 010421 238 TVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASC 317 (511)
Q Consensus 238 ~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 317 (511)
++|+.. + ...
T Consensus 180 ~l~~~~------~----~~~------------------------------------------------------------ 189 (408)
T 2gqw_A 180 LMSRAA------P----ATL------------------------------------------------------------ 189 (408)
T ss_dssp SSTTTS------C----HHH------------------------------------------------------------
T ss_pred cccccc------C----HHH------------------------------------------------------------
Confidence 233210 0 000
Q ss_pred cccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccc
Q 010421 318 QMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPL 396 (511)
Q Consensus 318 ~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (511)
.+.+.+.+++.+|+++.+. +.++++++|+++||+++++|.||+|||++++..+.+..+.. .+ + ++.+
T Consensus 190 -----~~~l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~-----~~-~-gi~V 257 (408)
T 2gqw_A 190 -----ADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLA-----CD-D-GIFV 257 (408)
T ss_dssp -----HHHHHHHHHHTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSCEEECCHHHHHHTCC-----BS-S-SEEC
T ss_pred -----HHHHHHHHHHcCcEEEeCCEEEEEECCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCCC-----CC-C-CEEE
Confidence 0011123455567888774 77887557889999999999999999999987654322211 11 2 2444
Q ss_pred eeeecCCCCCceEEEeecccch-----------hhhhHHHHHHHHHHHhcCCC
Q 010421 397 YRGTIHPLIPNMAFVGYIESVS-----------NLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 397 y~~~~~~~~pnl~~iG~~~~~~-----------~~~~~e~qa~~~a~~l~g~~ 438 (511)
..++ .++.||+|++|...... .+..+..||+.+|..+.|+.
T Consensus 258 d~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 309 (408)
T 2gqw_A 258 DAYG-RTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPT 309 (408)
T ss_dssp CTTC-BCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTT
T ss_pred CCCC-ccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCC
Confidence 4433 35789999999765421 35679999999999998754
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-26 Score=235.67 Aligned_cols=305 Identities=17% Similarity=0.154 Sum_probs=185.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCc----cccCCCCCCCC---CC-C
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSD----YEFTDFPWPNR---DD-P 71 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~----~~~~~~~~~~~---~~-~ 71 (511)
+.+||+|||||++|+++|..| .|++|+|+|++ .+||+|... ..|...+...... .....+.+... .. .
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH 88 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence 358999999999999999999 89999999996 789998641 1111100000000 00011111100 00 0
Q ss_pred CCCChHHHHHHH-----------HHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCce
Q 010421 72 GFPSYTEILDYL-----------ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSI 140 (511)
Q Consensus 72 ~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (511)
......++.++. ....++.++ .+..+ ++..++ ...+.|...++ +.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~------------------~~~~~v~~~~g---~~ 144 (479)
T 2hqm_A 89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKV--DVVFG-WARFNK------------------DGNVEVQKRDN---TT 144 (479)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTE--EEEEE-EEEECT------------------TSCEEEEESSS---CC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-EEEEee------------------CCEEEEEeCCC---cE
Confidence 112233333332 233334444 44444 343321 23344544332 22
Q ss_pred eEEEeCEEEEeecccCCCCCCC-CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHh
Q 010421 141 QRYGFEFLVVCTGKYGDVPIIP-AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAES 219 (511)
Q Consensus 141 ~~~~~d~vVlAtG~~~~~p~~p-~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~ 219 (511)
.++.||+||+|||. .|..| .+| |.+ .++++.++..+ ...+++|+|||+|.+|+|+|..|++.
T Consensus 145 ~~~~~d~lviAtGs---~p~~p~~i~---g~~----~~~~~~~~~~l-------~~~~~~vvViGgG~ig~E~A~~l~~~ 207 (479)
T 2hqm_A 145 EVYSANHILVATGG---KAIFPENIP---GFE----LGTDSDGFFRL-------EEQPKKVVVVGAGYIGIELAGVFHGL 207 (479)
T ss_dssp EEEEEEEEEECCCE---EECCCTTST---TGG----GSBCHHHHHHC-------SSCCSEEEEECSSHHHHHHHHHHHHT
T ss_pred EEEEeCEEEEcCCC---CCCCCCCCC---Ccc----cccchHHHhcc-------cccCCeEEEECCCHHHHHHHHHHHHc
Confidence 36899999999994 57788 788 653 23454444332 13578999999999999999999988
Q ss_pred cCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCc
Q 010421 220 NQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPL 299 (511)
Q Consensus 220 ~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (511)
+.+ |+++.|.+.. +|..+ ....
T Consensus 208 g~~-----Vtlv~~~~~~-l~~~d-----------~~~~----------------------------------------- 229 (479)
T 2hqm_A 208 GSE-----THLVIRGETV-LRKFD-----------ECIQ----------------------------------------- 229 (479)
T ss_dssp TCE-----EEEECSSSSS-CTTSC-----------HHHH-----------------------------------------
T ss_pred CCc-----eEEEEeCCcc-ccccC-----------HHHH-----------------------------------------
Confidence 754 9999998752 33321 0000
Q ss_pred ccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC------cEEEcCC-ceeeccEEEEecCCCC
Q 010421 300 LKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG------GLEFEDN-TKLEADVVILCTGYDG 371 (511)
Q Consensus 300 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~------~v~~~dG-~~~~~D~VI~aTG~~~ 371 (511)
+.+.+.+++.+|+++.+. +.+++.+ .|+++|| +++++|.||+|||++|
T Consensus 230 ------------------------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p 285 (479)
T 2hqm_A 230 ------------------------NTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKS 285 (479)
T ss_dssp ------------------------HHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEE
T ss_pred ------------------------HHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCC
Confidence 011123444467777764 7777542 3677899 7899999999999999
Q ss_pred cccc-cccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 372 KKKL-KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 372 ~~~~-~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+..+ ++.. ++..++++.+.+...+ .++.||+|++|.... +...+.+..|++.+|..+.|.
T Consensus 286 ~~~l~l~~~-----gl~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (479)
T 2hqm_A 286 HLGMGSENV-----GIKLNSHDQIIADEYQ-NTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGP 347 (479)
T ss_dssp CCCSSGGGG-----TCCBCTTSCBCCCTTC-BCSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSC
T ss_pred ccccChhhc-----CceECCCCCEeECCCC-ccCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 8743 2211 1112334445454443 467899999998754 345678999999999988763
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-26 Score=229.36 Aligned_cols=291 Identities=13% Similarity=0.151 Sum_probs=188.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCCh
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
|++.+||+|||||++|+++|..| .| .+|+|+|++. |..|....++. .+ ......
T Consensus 1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~~l~~-------------~~-------~~~~~~ 58 (384)
T 2v3a_A 1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKPMLST-------------GF-------SKNKDA 58 (384)
T ss_dssp ---CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGGGGGG-------------TT-------TTTCCH
T ss_pred CCCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcccccH-------------HH-------hCCCCH
Confidence 66678999999999999999999 55 5689999975 33333200000 00 111223
Q ss_pred HHHH-HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 77 TEIL-DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 77 ~~~~-~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.++. .++..+++++++ .++++++|..++.. .++|.+.++ ++.||+||+|||.
T Consensus 59 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~------------------~~~v~~~~~------~~~~d~lviAtG~- 111 (384)
T 2v3a_A 59 DGLAMAEPGAMAEQLNA--RILTHTRVTGIDPG------------------HQRIWIGEE------EVRYRDLVLAWGA- 111 (384)
T ss_dssp HHHEEECHHHHHHHTTC--EEECSCCCCEEEGG------------------GTEEEETTE------EEECSEEEECCCE-
T ss_pred HHhhccCHHHHHHhCCc--EEEeCCEEEEEECC------------------CCEEEECCc------EEECCEEEEeCCC-
Confidence 4443 356667777887 77778889888762 135665321 6899999999994
Q ss_pred CCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 156 GDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 156 ~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|..|++| |.+. ..++++.++.+.... ......+++|+|||+|.+|+|+|..+++.+.+ |+++.|.+
T Consensus 112 --~p~~p~i~---g~~~--~~v~~~~~~~~~~~~-~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~-----Vtlv~~~~ 178 (384)
T 2v3a_A 112 --EPIRVPVE---GDAQ--DALYPINDLEDYARF-RQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQ-----LDVVAPCE 178 (384)
T ss_dssp --EECCCCCB---STTT--TCEEECSSHHHHHHH-HHHHTTCCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSS
T ss_pred --CcCCCCCC---CcCc--CCEEEECCHHHHHHH-HHhhccCCeEEEECCCHHHHHHHHHHHhCCCe-----EEEEecCc
Confidence 57788787 5432 235665554332100 01234589999999999999999999998754 99999976
Q ss_pred ceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccc
Q 010421 236 HWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYA 315 (511)
Q Consensus 236 ~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 315 (511)
. +++... + ...
T Consensus 179 ~-~~~~~~------~----~~~---------------------------------------------------------- 189 (384)
T 2v3a_A 179 Q-VMPGLL------H----PAA---------------------------------------------------------- 189 (384)
T ss_dssp S-SSTTTS------C----HHH----------------------------------------------------------
T ss_pred c-hhhccc------C----HHH----------------------------------------------------------
Confidence 4 222210 0 000
Q ss_pred cccccccCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCC
Q 010421 316 SCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHP 390 (511)
Q Consensus 316 ~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
.+.+.+.+++.+|+++.+. +.+++.+ .|+++||+++++|.||+|||++++..+.+.++.. .+
T Consensus 190 -------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~-----~~- 256 (384)
T 2v3a_A 190 -------AKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLA-----VN- 256 (384)
T ss_dssp -------HHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCC-----BS-
T ss_pred -------HHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCC-----CC-
Confidence 0111233445567777764 7777532 3678899999999999999999987654322211 11
Q ss_pred CCcccceeeecCCCCCceEEEeecccc-----hhhhhHHHHHHHHHHHhcCC
Q 010421 391 SGLLPLYRGTIHPLIPNMAFVGYIESV-----SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 391 ~~~~~ly~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~ 437 (511)
++ +.+..+ +.++.||+|++|..... ..+..+..||+.+|..+.|+
T Consensus 257 ~g-i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~ 306 (384)
T 2v3a_A 257 RG-IVVDRS-LRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGN 306 (384)
T ss_dssp SS-EEECTT-CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred CC-EEECCC-CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCC
Confidence 22 444443 33678999999977531 12456889999999999875
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=235.19 Aligned_cols=302 Identities=16% Similarity=0.135 Sum_probs=183.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc-----ccCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY-----EFTDFPWPNRDDPG 72 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 72 (511)
|++.+||+|||||++|+++|..| .|++|+|+|++ .+||+|... ..|...+..+...+ ....+.++.. ..
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~--~~ 77 (450)
T 1ges_A 1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTT--IN 77 (450)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEE--EE
T ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCC--CC
Confidence 66678999999999999999999 89999999997 789998631 11111000000000 0011111000 00
Q ss_pred CCChHHHHHHHH-----------HHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 73 FPSYTEILDYLE-----------SYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 73 ~~~~~~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
.....++.++.+ ...++.++ .+..+ ++..++. ++|.+ ++.
T Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~i~~--------------------~~v~~-~g~----- 128 (450)
T 1ges_A 78 KFNWETLIASRTAYIDRIHTSYENVLGKNNV--DVIKG-FARFVDA--------------------KTLEV-NGE----- 128 (450)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CCEEEET--------------------TEEEE-TTE-----
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-EEEEecC--------------------CEEEE-CCE-----
Confidence 112233333322 22344555 44444 3333332 14655 322
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
++.||+||+|||+ .|..|.+| |.+ .++++.++..+ ...+++|+|||+|.+|+|+|..|++.+.
T Consensus 129 ~~~~d~lviAtGs---~p~~p~i~---g~~----~~~~~~~~~~~-------~~~~~~vvViGgG~~g~e~A~~l~~~g~ 191 (450)
T 1ges_A 129 TITADHILIATGG---RPSHPDIP---GVE----YGIDSDGFFAL-------PALPERVAVVGAGYIGVELGGVINGLGA 191 (450)
T ss_dssp EEEEEEEEECCCE---EECCCCST---TGG----GSBCHHHHHHC-------SSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred EEEeCEEEECCCC---CCCCCCCC---Ccc----ceecHHHhhhh-------hhcCCeEEEECCCHHHHHHHHHHHhcCC
Confidence 7899999999994 57888888 653 23455444332 1347899999999999999999998875
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ |+++.|.+. ++|..+ . ...
T Consensus 192 ~-----Vtlv~~~~~-~l~~~~-------~----~~~------------------------------------------- 211 (450)
T 1ges_A 192 K-----THLFEMFDA-PLPSFD-------P----MIS------------------------------------------- 211 (450)
T ss_dssp E-----EEEECSSSS-SSTTSC-------H----HHH-------------------------------------------
T ss_pred E-----EEEEEeCCc-hhhhhh-------H----HHH-------------------------------------------
Confidence 4 999999865 223221 0 000
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEEcCCceeeccEEEEecCCCCcccc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEFEDNTKLEADVVILCTGYDGKKKL 375 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~~dG~~~~~D~VI~aTG~~~~~~~ 375 (511)
+.+.+.+++.+|+++.+. +.+++.+ .|+++||+++++|.||+|||++++...
T Consensus 212 ----------------------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~ 269 (450)
T 1ges_A 212 ----------------------ETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDN 269 (450)
T ss_dssp ----------------------HHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTT
T ss_pred ----------------------HHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCC
Confidence 001123344456777664 6777542 367889999999999999999998752
Q ss_pred cccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 376 KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+ ...-.++..++++.+.+...+ .++.||+|++|.... +...+.+..|++.+|..+.|.
T Consensus 270 l---~~~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T 1ges_A 270 I---NLEAAGVKTNEKGYIVVDKYQ-NTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNN 328 (450)
T ss_dssp S---CHHHHTCCBCTTSCBCCCTTS-BCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred C---CchhcCceECCCCCEeECCCC-ccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 1 000011112334445554443 467899999998764 345678999999999988764
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-26 Score=235.60 Aligned_cols=310 Identities=16% Similarity=0.124 Sum_probs=189.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----c-cCCCCCCCC-----C
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----E-FTDFPWPNR-----D 69 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~-~~~~~~~~~-----~ 69 (511)
..+||+|||||++|+++|..| .|++|+|+|+++.+||+|... ..|...+......+ . +..+.++.. +
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL 84 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 468999999999999999999 899999999998999998641 11111000000000 0 000000000 0
Q ss_pred CCCCCChH----HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 70 DPGFPSYT----EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 70 ~~~~~~~~----~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
...+.... .+..++...+++.++ .+++++.+. ++ .+.|+|.+.++ ...++.|
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~------------------~~~~~v~~~~G---~~~~i~~ 140 (470)
T 1dxl_A 85 AAMMGQKDKAVSNLTRGIEGLFKKNKV--TYVKGYGKF-VS------------------PSEISVDTIEG---ENTVVKG 140 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCEEE-EE------------------TTEEEECCSSS---CCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-ec------------------CCEEEEEeCCC---ceEEEEc
Confidence 00000111 122334555666777 677776553 32 23455543332 2237899
Q ss_pred CEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCC
Q 010421 146 EFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEG 225 (511)
Q Consensus 146 d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 225 (511)
|+||+|||. .|..|.++ |.+. ..++++.+...+. ..+++|+|||+|.+|+|+|..|++.+.+
T Consensus 141 d~lIiAtGs---~p~~p~~~---g~~~--~~v~~~~~~~~~~-------~~~~~vvViGgG~~g~e~A~~l~~~g~~--- 202 (470)
T 1dxl_A 141 KHIIIATGS---DVKSLPGV---TIDE--KKIVSSTGALALS-------EIPKKLVVIGAGYIGLEMGSVWGRIGSE--- 202 (470)
T ss_dssp SEEEECCCE---EECCBTTB---CCCS--SSEECHHHHTTCS-------SCCSEEEESCCSHHHHHHHHHHHHHTCE---
T ss_pred CEEEECCCC---CCCCCCCC---CCCc--ccEEeHHHhhhhh-------hcCCeEEEECCCHHHHHHHHHHHHcCCc---
Confidence 999999995 56777777 5432 1366666554422 2578999999999999999999998764
Q ss_pred CcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCC
Q 010421 226 QPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLK 305 (511)
Q Consensus 226 ~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (511)
|+++.|++. ++|... ..+ .
T Consensus 203 --Vtli~~~~~-~l~~~~-----------~~~----------------------------~------------------- 221 (470)
T 1dxl_A 203 --VTVVEFASE-IVPTMD-----------AEI----------------------------R------------------- 221 (470)
T ss_dssp --EEEECSSSS-SSTTSC-----------HHH----------------------------H-------------------
T ss_pred --EEEEEcCCc-cccccc-----------HHH----------------------------H-------------------
Confidence 999999875 333221 000 0
Q ss_pred CCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEc---CC--ceeeccEEEEecCCCCcccc
Q 010421 306 PDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFE---DN--TKLEADVVILCTGYDGKKKL 375 (511)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~---dG--~~~~~D~VI~aTG~~~~~~~ 375 (511)
+.+.+.+++.+|+++.+. +.+++.++ |.++ || +++++|.||+|||++++..+
T Consensus 222 ------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 283 (470)
T 1dxl_A 222 ------------------KQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSG 283 (470)
T ss_dssp ------------------HHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTT
T ss_pred ------------------HHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCC
Confidence 001123445567777664 77776543 3444 55 56999999999999998765
Q ss_pred cccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 376 KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
+. + .-.++..+..+.+.+..++ .++.||+|++|..... ...+.+..|++.+|..+.|+
T Consensus 284 l~-~--~~~gl~~~~~G~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 342 (470)
T 1dxl_A 284 LN-L--DKIGVETDKLGRILVNERF-STNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGK 342 (470)
T ss_dssp SC-C--TTTTCCBCSSSCBCCCTTC-BCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred CC-c--hhcCCccCCCCCEeECcCC-ccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 21 0 1011111233445454443 3678999999987653 34568999999999999875
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=234.57 Aligned_cols=303 Identities=13% Similarity=0.089 Sum_probs=186.3
Q ss_pred CCC-CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccC----CCCccccCCCCCCCCCCCC
Q 010421 1 MAN-YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQS----HRSDYEFTDFPWPNRDDPG 72 (511)
Q Consensus 1 m~~-~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 72 (511)
|++ .+||+|||||++|+++|..| .|++|+|+|+ +.+||+|... ..|...+.. +.....+..+.++.. ..
T Consensus 1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~--~~ 77 (463)
T 4dna_A 1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVG--ES 77 (463)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEEC--CC
T ss_pred CCCCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccC--CC
Confidence 543 58999999999999999999 8999999999 7899988641 111110000 000001111111100 01
Q ss_pred CCChHHH-----------HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 73 FPSYTEI-----------LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 73 ~~~~~~~-----------~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
.....++ ..++....++.++ .+..+ ++..++ ..++.+.+. + .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~--------------------~~~v~~~~~--~--~ 130 (463)
T 4dna_A 78 RFDWAKLVAAKEQEIARLEGLYRKGLANAGA--EILDT-RAELAG--------------------PNTVKLLAS--G--K 130 (463)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEES-CEEESS--------------------SSEEEETTT--T--E
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEee--------------------CCEEEEecC--C--e
Confidence 1122222 2333444444555 34433 333221 124555211 2 2
Q ss_pred EEEeCEEEEeecccCCCCC-CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhc
Q 010421 142 RYGFEFLVVCTGKYGDVPI-IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESN 220 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~-~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~ 220 (511)
.+.||+||+|||. .|. .|.+| |.+. ++++.++..+ ...+++|+|||+|.+|+|+|..+++.+
T Consensus 131 ~~~~d~lviAtG~---~p~~~p~i~---G~~~----~~~~~~~~~~-------~~~~~~v~ViGgG~~g~e~A~~l~~~g 193 (463)
T 4dna_A 131 TVTAERIVIAVGG---HPSPHDALP---GHEL----CITSNEAFDL-------PALPESILIAGGGYIAVEFANIFHGLG 193 (463)
T ss_dssp EEEEEEEEECCCE---EECCCTTST---TGGG----CBCHHHHTTC-------SSCCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred EEEeCEEEEecCC---CcccCCCCC---Cccc----cccHHHHhhh-------hcCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 7899999999994 577 88888 6542 3444444432 235789999999999999999999887
Q ss_pred CCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcc
Q 010421 221 QGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLL 300 (511)
Q Consensus 221 ~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
.+ |+++.|.+..+ |..+ ...
T Consensus 194 ~~-----Vt~v~~~~~~l-~~~~-----------~~~------------------------------------------- 213 (463)
T 4dna_A 194 VK-----TTLIYRGKEIL-SRFD-----------QDM------------------------------------------- 213 (463)
T ss_dssp CE-----EEEECSSSSSS-TTSC-----------HHH-------------------------------------------
T ss_pred Ce-----EEEEEcCCccc-cccC-----------HHH-------------------------------------------
Confidence 54 99999987532 3221 000
Q ss_pred cCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEE-EcCCceeeccEEEEecCCCCcc
Q 010421 301 KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLE-FEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 301 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~-~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
.+.+.+.+++.+|+++.+. +.+++.+ .|+ ++||+ +++|.||+|||++++.
T Consensus 214 ----------------------~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~ 270 (463)
T 4dna_A 214 ----------------------RRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNT 270 (463)
T ss_dssp ----------------------HHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESC
T ss_pred ----------------------HHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCC
Confidence 0111234555677888764 7777643 366 77888 9999999999999987
Q ss_pred cccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 374 KLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.++. ..-.++..++++.+.+..++. ++.||+|++|.... +...+.+..|++.+|..+.|.
T Consensus 271 ~~l~---l~~~g~~~~~~G~i~vd~~~~-t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 271 NGLG---LEAAGVRTNELGAIIVDAFSR-TSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp TTSS---TGGGTCCBCTTSCBCCCTTCB-CSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCC---ccccCceECCCCCEeECcCCC-CCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence 6421 111112223444455554433 78899999998765 334578999999999998764
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-26 Score=233.47 Aligned_cols=304 Identities=16% Similarity=0.172 Sum_probs=186.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCC----ccccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRS----DYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 76 (511)
.+||+|||||++|+++|..| .|++|+|+|++ .+||+|... ..|...+..... ...+..+.++.. ......
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAE--NVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECC--SCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccC--CCccCH
Confidence 47999999999999999999 89999999997 899988531 111110000000 000000111000 000111
Q ss_pred H-----------HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 77 T-----------EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 77 ~-----------~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
. .+.+++...+++.++ .++.++.+. ++ .+.+.|...++ . .++.|
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-id------------------~~~v~V~~~~G---~-~~i~~ 134 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKV--EIVKGEAYF-VD------------------ANTVRVVNGDS---A-QTYTF 134 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC--EEEESEEEE-EE------------------TTEEEEEETTE---E-EEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-cc------------------CCeEEEEeCCC---c-EEEEe
Confidence 1 133445556666777 677766543 33 33455554332 1 27899
Q ss_pred CEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCC
Q 010421 146 EFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEG 225 (511)
Q Consensus 146 d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 225 (511)
|+||+|||. .|..|.++ |.+. .++++.+...+. ..+++|+|||+|.+|+|+|..|++.+.+
T Consensus 135 d~lViATGs---~p~~~~~~---g~~~---~v~~~~~~~~~~-------~~~~~vvViGgG~~g~e~A~~l~~~g~~--- 195 (455)
T 1ebd_A 135 KNAIIATGS---RPIELPNF---KFSN---RILDSTGALNLG-------EVPKSLVVIGGGYIGIELGTAYANFGTK--- 195 (455)
T ss_dssp SEEEECCCE---EECCBTTB---CCCS---SEECHHHHHTCS-------SCCSEEEEECCSHHHHHHHHHHHHTTCE---
T ss_pred CEEEEecCC---CCCCCCCC---Cccc---eEecHHHHhccc-------cCCCeEEEECCCHHHHHHHHHHHHcCCc---
Confidence 999999995 57777777 5432 256665543321 2578999999999999999999988754
Q ss_pred CcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCC
Q 010421 226 QPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLK 305 (511)
Q Consensus 226 ~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (511)
|+++.|.+. ++|... ....
T Consensus 196 --Vtlv~~~~~-~l~~~~-----------~~~~----------------------------------------------- 214 (455)
T 1ebd_A 196 --VTILEGAGE-ILSGFE-----------KQMA----------------------------------------------- 214 (455)
T ss_dssp --EEEEESSSS-SSTTSC-----------HHHH-----------------------------------------------
T ss_pred --EEEEEcCCc-cccccC-----------HHHH-----------------------------------------------
Confidence 999999875 333221 0000
Q ss_pred CCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--cE--EEc---CCceeeccEEEEecCCCCcccccc
Q 010421 306 PDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--GL--EFE---DNTKLEADVVILCTGYDGKKKLKA 377 (511)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~v--~~~---dG~~~~~D~VI~aTG~~~~~~~~~ 377 (511)
+.+.+.+++.+|+++.+. +.+++.+ ++ .++ +++++++|.||+|||++++..++.
T Consensus 215 ------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~ 276 (455)
T 1ebd_A 215 ------------------AIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELG 276 (455)
T ss_dssp ------------------HHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSS
T ss_pred ------------------HHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCC
Confidence 001123444567777764 6677532 33 443 456799999999999999876421
Q ss_pred cCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 378 FLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
+ .-.++..++++.+.+...+ .++.||+|++|..... ...+.+..|++.+|..+.|+
T Consensus 277 -~--~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (455)
T 1ebd_A 277 -L--EQIGIKMTNRGLIEVDQQC-RTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH 333 (455)
T ss_dssp -T--TTTTCCBCTTSCBCCCTTC-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred -h--hhcCCccCCCCCEeeCCCc-ccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 0 1011111233445554443 3678999999987653 34568999999999999875
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=234.62 Aligned_cols=314 Identities=14% Similarity=0.106 Sum_probs=191.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--c---CCCcEEEcCCCCcCccccCC-CcCceeccCCCC----ccccCCCCCCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R---HHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRS----DYEFTDFPWPNRDDPGF 73 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~---g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 73 (511)
.+||+|||||++|+++|..| . |++|+|||+++ +||+|... ..|...+..... ...+..+.++.......
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK 80 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence 47999999999999999999 5 99999999987 99987641 112111100000 00112222210000111
Q ss_pred CChHHHH-----------HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 74 PSYTEIL-----------DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 74 ~~~~~~~-----------~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
.....+. .++..+.+++++ .++.++ +..++...+. .++. +.+...+ ++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~i~~~~~~------------~~~~--~~V~~~~-g~~~~ 142 (499)
T 1xdi_A 81 ISLPQIHARVKTLAAAQSADITAQLLSMGV--QVIAGR-GELIDSTPGL------------ARHR--IKATAAD-GSTSE 142 (499)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESE-EEECCSSSCC------------SSEE--EEEECTT-SCEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEecCcccC------------CCCE--EEEEeCC-CcEEE
Confidence 2233332 334556667777 666664 5544331000 0133 3343322 22236
Q ss_pred EEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC
Q 010421 143 YGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 143 ~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
+.||+||+|||. .|..|.++ |.+.. .++++.+...+. ..+++|+|||+|.+|+|+|..+++.+.+
T Consensus 143 ~~~d~lviATGs---~p~~p~i~---g~~~~--~v~~~~~~~~~~-------~~~~~vvViGgG~ig~E~A~~l~~~g~~ 207 (499)
T 1xdi_A 143 HEADVVLVATGA---SPRILPSA---QPDGE--RILTWRQLYDLD-------ALPDHLIVVGSGVTGAEFVDAYTELGVP 207 (499)
T ss_dssp EEESEEEECCCE---EECCCGGG---CCCSS--SEEEGGGGGGCS-------SCCSSEEEESCSHHHHHHHHHHHHTTCC
T ss_pred EEeCEEEEcCCC---CCCCCCCC---CCCcC--cEEehhHhhhhh-------ccCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 899999999994 57778777 54432 266666554422 3568999999999999999999988765
Q ss_pred CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccC
Q 010421 223 PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKY 302 (511)
Q Consensus 223 ~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
|+++.|.+. ++|..+ ....
T Consensus 208 -----Vtlv~~~~~-~l~~~d-----------~~~~-------------------------------------------- 226 (499)
T 1xdi_A 208 -----VTVVASQDH-VLPYED-----------ADAA-------------------------------------------- 226 (499)
T ss_dssp -----EEEECSSSS-SSCCSS-----------HHHH--------------------------------------------
T ss_pred -----EEEEEcCCc-cccccC-----------HHHH--------------------------------------------
Confidence 999999875 333321 0000
Q ss_pred CCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEcCCceeeccEEEEecCCCCcccccc
Q 010421 303 GLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFEDNTKLEADVVILCTGYDGKKKLKA 377 (511)
Q Consensus 303 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~dG~~~~~D~VI~aTG~~~~~~~~~ 377 (511)
..+.+.+++.+|+++.+. |.+++.++ |.+.||+++++|.||+|+|++++..++.
T Consensus 227 ---------------------~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~ 285 (499)
T 1xdi_A 227 ---------------------LVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLG 285 (499)
T ss_dssp ---------------------HHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSC
T ss_pred ---------------------HHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCC
Confidence 011123445567777764 77776443 4556888899999999999999976521
Q ss_pred cCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 378 FLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
+ .-.++..+..+.+.+...+ .++.||+|++|..... ...+.+..|++.+|..+.|+
T Consensus 286 -l--~~~gl~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 342 (499)
T 1xdi_A 286 -L--ERVGIQLGRGNYLTVDRVS-RTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE 342 (499)
T ss_dssp -T--TTTTCCCBTTTBCCCCSSS-BCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred -c--hhcCceECCCCCEEECCCc-ccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 0 1011111233445454443 3578999999987653 33568999999999999885
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-26 Score=234.27 Aligned_cols=308 Identities=16% Similarity=0.133 Sum_probs=189.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc------ccCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY------EFTDFPWPNRDDPGF 73 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 73 (511)
+.+||+|||||++|+++|..| .|++|+|+|+++.+||+|... ..|...+......+ .+..+.++.. ...
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~--~~~ 82 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMS--EVR 82 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEES--CEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccC--CCc
Confidence 357999999999999999999 899999999998999998641 11211110000000 1111111100 001
Q ss_pred CChHHHHHH-----------HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 74 PSYTEILDY-----------LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 74 ~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
....++..+ +....++.++ .++.++. ..++ .+.++|.+.++ + ..+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~-~~~~------------------~~~~~v~~~~g--g-~~~ 138 (474)
T 1zmd_A 83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKV--VHVNGYG-KITG------------------KNQVTATKADG--G-TQV 138 (474)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEE-EEEE------------------TTEEEEECTTS--C-EEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEE-EEec------------------CCEEEEEecCC--C-cEE
Confidence 122232222 2445556666 6666643 3332 23445543321 1 136
Q ss_pred EEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC
Q 010421 143 YGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 143 ~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
+.||+||+|||+ .|..|.++ |.+.. .++++.++..+. ..+++|+|||+|.+|+|+|..|++.+.+
T Consensus 139 ~~~d~lViAtGs---~p~~p~i~---g~~~~--~v~t~~~~~~~~-------~~~~~vvViGgG~~g~E~A~~l~~~g~~ 203 (474)
T 1zmd_A 139 IDTKNILIATGS---EVTPFPGI---TIDED--TIVSSTGALSLK-------KVPEKMVVIGAGVIGVELGSVWQRLGAD 203 (474)
T ss_dssp EEEEEEEECCCE---EECCCTTC---CCCSS--SEECHHHHTTCS-------SCCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred EEeCEEEECCCC---CCCCCCCC---CCCcC--cEEcHHHHhhcc-------ccCceEEEECCCHHHHHHHHHHHHcCCE
Confidence 899999999995 57777777 54321 367776665432 2468999999999999999999988754
Q ss_pred CCCCcEEEEEecCceeec-CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 223 PEGQPCTMIVRTTHWTVP-HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 223 ~~~~~Vtl~~R~~~~~~p-~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
|+++.|++. ++| ..+ . ...
T Consensus 204 -----Vtlv~~~~~-~l~~~~~-------~----~~~------------------------------------------- 223 (474)
T 1zmd_A 204 -----VTAVEFLGH-VGGVGID-------M----EIS------------------------------------------- 223 (474)
T ss_dssp -----EEEECSSSS-SSCSSCC-------H----HHH-------------------------------------------
T ss_pred -----EEEEeccCc-cCCcccC-------H----HHH-------------------------------------------
Confidence 999999875 333 211 0 000
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c-EEE-------cCCceeeccEEEEecCCC
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G-LEF-------EDNTKLEADVVILCTGYD 370 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~-v~~-------~dG~~~~~D~VI~aTG~~ 370 (511)
+.+.+.+++.+|+++.+. |.+++.+ + +.+ .+|+++++|.||+|||++
T Consensus 224 ----------------------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~ 281 (474)
T 1zmd_A 224 ----------------------KNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRR 281 (474)
T ss_dssp ----------------------HHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred ----------------------HHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCC
Confidence 011123445567777764 6677543 2 433 356679999999999999
Q ss_pred CcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 371 GKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
++..++. ..-.++..++++.+.+...+ .++.||+|++|..... ...+.+..|++.+|..+.|+
T Consensus 282 p~~~~l~---l~~~g~~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 345 (474)
T 1zmd_A 282 PFTKNLG---LEELGIELDPRGRIPVNTRF-QTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG 345 (474)
T ss_dssp ECCTTSS---HHHHTCCCCTTSCCCCCTTC-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCcCC---chhcCCccCCCCCEEECcCC-ccCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence 9876421 00011111233445554443 3678999999987653 34578999999999999875
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-26 Score=235.50 Aligned_cols=300 Identities=14% Similarity=0.152 Sum_probs=178.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccC----CCCccccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQS----HRSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
.+||+|||||++|+++|..| .|++|+|+|++ .+||+|... ..|...+.. .........+.+... .....
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~---~~~~~ 77 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK---FSFNL 77 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC---CCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC---CccCH
Confidence 48999999999999999999 89999999997 589998641 112110000 000000111111110 01122
Q ss_pred HHHH-----------HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC--------CC
Q 010421 77 TEIL-----------DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH--------NS 137 (511)
Q Consensus 77 ~~~~-----------~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~ 137 (511)
.++. .++....++.++ .+..++ +..++ . ++|++.+. .+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~id------------------~--~~v~v~~~~~~~~~~~~~ 134 (500)
T 1onf_A 78 PLLVERRDKYIQRLNNIYRQNLSKDKV--DLYEGT-ASFLS------------------E--NRILIKGTKDNNNKDNGP 134 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESC-CCCC----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEee------------------C--CEEEEEeccccccccccC
Confidence 2222 223334455555 454442 22221 1 12333320 00
Q ss_pred CceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHH
Q 010421 138 NSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECA 217 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~ 217 (511)
+...++.||+||+||| ..|..|++| |.+ .++++.++..+. . +++|+|||+|.+|+|+|..|+
T Consensus 135 ~~~~~~~~d~lViAtG---s~p~~p~i~---G~~----~~~~~~~~~~~~-------~-~~~vvViGgG~ig~E~A~~l~ 196 (500)
T 1onf_A 135 LNEEILEGRNILIAVG---NKPVFPPVK---GIE----NTISSDEFFNIK-------E-SKKIGIVGSGYIAVELINVIK 196 (500)
T ss_dssp ------CBSSEEECCC---CCBCCCSCT---TGG----GCEEHHHHTTCC-------C-CSEEEEECCSHHHHHHHHHHH
T ss_pred CCceEEEeCEEEECCC---CCCCCCCCC---CCC----cccCHHHHhccC-------C-CCeEEEECChHHHHHHHHHHH
Confidence 0112689999999999 468888888 653 356776665432 2 789999999999999999999
Q ss_pred HhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccC
Q 010421 218 ESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKL 297 (511)
Q Consensus 218 ~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (511)
+.+.+ ||++.|.+. ++|..+ ...
T Consensus 197 ~~g~~-----Vtlv~~~~~-~l~~~d-----------~~~---------------------------------------- 219 (500)
T 1onf_A 197 RLGID-----SYIFARGNR-ILRKFD-----------ESV---------------------------------------- 219 (500)
T ss_dssp TTTCE-----EEEECSSSS-SCTTSC-----------HHH----------------------------------------
T ss_pred HcCCe-----EEEEecCCc-cCcccc-----------hhh----------------------------------------
Confidence 88754 999999875 334322 000
Q ss_pred CcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEEcCCce-eeccEEEEecCCC
Q 010421 298 PLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEFEDNTK-LEADVVILCTGYD 370 (511)
Q Consensus 298 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~~dG~~-~~~D~VI~aTG~~ 370 (511)
.+.+.+.+++.+|+++.+. +.+++++ .|+++||++ +++|.||+|||++
T Consensus 220 -------------------------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~ 274 (500)
T 1onf_A 220 -------------------------INVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRS 274 (500)
T ss_dssp -------------------------HHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBC
T ss_pred -------------------------HHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCC
Confidence 0011134555667887775 7777642 367789988 9999999999999
Q ss_pred Cccc-c-cccCCCcccccccCCCCcccceeeecCCCCCceEEEeecc---------------------------------
Q 010421 371 GKKK-L-KAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIE--------------------------------- 415 (511)
Q Consensus 371 ~~~~-~-~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~--------------------------------- 415 (511)
++.. + .+..+ +.. ..+.+.+...+ .++.||+|++|...
T Consensus 275 p~~~~l~~~~~g-----~~~-~~G~i~vd~~~-~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 347 (500)
T 1onf_A 275 PDTENLKLEKLN-----VET-NNNYIVVDENQ-RTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDI 347 (500)
T ss_dssp CTTTTSSCTTTT-----CCB-SSSCEEECTTC-BCSSSSEEECSTTEEEC------------------------------
T ss_pred cCCCCCCchhcC-----ccc-cCCEEEECCCc-ccCCCCEEEEecccccccccccccccccccccccccccccccccccc
Confidence 9874 2 12111 111 23334444433 36789999999655
Q ss_pred -c-chhhhhHHHHHHHHHHHhcCC
Q 010421 416 -S-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 416 -~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
. +...+.|..|++.+|..+.|.
T Consensus 348 ~~~~~~~~~A~~~g~~aa~~i~g~ 371 (500)
T 1onf_A 348 FYNVQLTPVAINAGRLLADRLFLK 371 (500)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCcccchhHHHHHHHHHHHHHhCC
Confidence 1 223568999999999998763
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=228.43 Aligned_cols=309 Identities=17% Similarity=0.140 Sum_probs=183.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCC-CccccCCCCCCCCC--CCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHR-SDYEFTDFPWPNRD--DPGFP 74 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~ 74 (511)
|+..+||+|||||++|+++|.+| .|++|+|+|++ .+||+|... .+|...+.... ..+.....|+.... .....
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (467)
T 1zk7_A 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 79 (467)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc
Confidence 77789999999999999999999 89999999997 899998741 11111000000 00001111111000 01111
Q ss_pred ChHHHH-------HHHH-----HHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 75 SYTEIL-------DYLE-----SYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 75 ~~~~~~-------~yl~-----~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
...++. ++++ ...++. ++ .+..+ ++..++ .+.++|.+.++ +..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~g-~~~~~~------------------~~~~~v~~~~g---~~~ 135 (467)
T 1zk7_A 80 DRSKLLAQQQARVDELRHAKYEGILGGNPAI--TVVHG-EARFKD------------------DQSLTVRLNEG---GER 135 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTE--EEEEE-EEEEEE------------------TTEEEEEETTS---SEE
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhccCCe--EEEEE-EEEEcc------------------CCEEEEEeCCC---ceE
Confidence 222222 2332 122223 33 33333 454444 22344544332 223
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 142 RYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
++.||+||+|||+ .|..|.+| |.+.. .++++.+...+ ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 136 ~~~~d~lviAtGs---~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~l~~~g~ 200 (467)
T 1zk7_A 136 VVMFDRCLVATGA---SPAVPPIP---GLKES--PYWTSTEALAS-------DTIPERLAVIGSSVVALELAQAFARLGS 200 (467)
T ss_dssp EEECSEEEECCCE---EECCCCCT---TTTTS--CCBCHHHHHHC-------SSCCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred EEEeCEEEEeCCC---CCCCCCCC---CCCcC--ceecHHHHhcc-------cccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 7899999999994 67888888 65432 24455444332 2357999999999999999999998876
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ |+++.|++. ++| .+ . ...
T Consensus 201 ~-----Vtlv~~~~~-~l~-~~-------~----~~~------------------------------------------- 219 (467)
T 1zk7_A 201 K-----VTVLARNTL-FFR-ED-------P----AIG------------------------------------------- 219 (467)
T ss_dssp E-----EEEECSSCT-TTT-SC-------H----HHH-------------------------------------------
T ss_pred E-----EEEEEECCc-cCC-CC-------H----HHH-------------------------------------------
Confidence 4 999999874 223 21 0 000
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEcCCceeeccEEEEecCCCCccccc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFEDNTKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~dG~~~~~D~VI~aTG~~~~~~~~ 376 (511)
+.+.+.+++.+|+++.+. +.+++.++ |.++ +.++++|.||+|||++++..++
T Consensus 220 ----------------------~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l 276 (467)
T 1zk7_A 220 ----------------------EAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSL 276 (467)
T ss_dssp ----------------------HHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTS
T ss_pred ----------------------HHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcC
Confidence 011123444567777663 66665322 3444 5679999999999999986532
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
. ..-.++..+..+.+.+...+ .++.||+|++|..... ...+.+..|++.+|..+.+.
T Consensus 277 ~---l~~~gl~~~~~G~i~vd~~~-~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 334 (467)
T 1zk7_A 277 A---LDAAGVTVNAQGAIVIDQGM-RTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 334 (467)
T ss_dssp C---GGGGTCCBCTTSCBCCCTTC-BCSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred C---chhcCCcCCCCCCEEECCCc-ccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 1 00011111233445444433 3578999999987653 34678999999999988764
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-26 Score=235.28 Aligned_cols=303 Identities=13% Similarity=0.102 Sum_probs=186.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCc----c-ccCCCCCCCCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSD----Y-EFTDFPWPNRDDPGFPS 75 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~ 75 (511)
.+||+|||||++|+++|..| .|++|+|+|++ .+||+|... ..|...+...... . .+..+.++ . .....
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~-~--~~~~~ 78 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-G--EVTFD 78 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE-E--CCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC-C--CCccC
Confidence 57999999999999999999 89999999997 789887531 1121111000000 0 01111111 0 00011
Q ss_pred hH-----------HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEE
Q 010421 76 YT-----------EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYG 144 (511)
Q Consensus 76 ~~-----------~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (511)
.. .+.+++...+++.++ .+++++.+. + + .+.++|...++ +..++.
T Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~~~~g~~~~-i----d--------------~~~v~V~~~~G---~~~~~~ 134 (464)
T 2a8x_A 79 YGIAYDRSRKVAEGRVAGVHFLMKKNKI--TEIHGYGTF-A----D--------------ANTLLVDLNDG---GTESVT 134 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECEEEEE-S----S--------------SSEEEEEETTS---CCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-e----c--------------CCeEEEEeCCC---ceEEEE
Confidence 11 223344556666777 677666542 1 1 33455544332 223789
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCC
Q 010421 145 FEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPE 224 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 224 (511)
||+||+|||+ .|..|.++ |.+. .++++.+...+. ..+++|+|||+|.+|+|+|..|++.+.+
T Consensus 135 ~d~lViAtG~---~~~~~~~~---g~~~---~~~~~~~~~~~~-------~~~~~vvViGgG~~g~E~A~~l~~~g~~-- 196 (464)
T 2a8x_A 135 FDNAIIATGS---STRLVPGT---SLSA---NVVTYEEQILSR-------ELPKSIIIAGAGAIGMEFGYVLKNYGVD-- 196 (464)
T ss_dssp EEEEEECCCE---EECCCTTC---CCBT---TEECHHHHHTCS-------SCCSEEEEECCSHHHHHHHHHHHHTTCE--
T ss_pred cCEEEECCCC---CCCCCCCC---CCCc---eEEecHHHhhcc-------ccCCeEEEECCcHHHHHHHHHHHHcCCe--
Confidence 9999999995 46777776 5432 256655543321 2578999999999999999999988754
Q ss_pred CCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCC
Q 010421 225 GQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304 (511)
Q Consensus 225 ~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (511)
||++.|.+. ++|..+ .... .
T Consensus 197 ---Vtlv~~~~~-~l~~~~-----------~~~~----------------------------~----------------- 216 (464)
T 2a8x_A 197 ---VTIVEFLPR-ALPNED-----------ADVS----------------------------K----------------- 216 (464)
T ss_dssp ---EEEECSSSS-SSTTSC-----------HHHH----------------------------H-----------------
T ss_pred ---EEEEEcCCc-cccccC-----------HHHH----------------------------H-----------------
Confidence 999999875 333321 0000 0
Q ss_pred CCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc----EEEc-CC--ceeeccEEEEecCCCCccccc
Q 010421 305 KPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG----LEFE-DN--TKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 305 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~-dG--~~~~~D~VI~aTG~~~~~~~~ 376 (511)
.+.+.+++.+|+++.+. +.++++++ +.++ || +++++|.||+|||++|+..++
T Consensus 217 --------------------~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l 276 (464)
T 2a8x_A 217 --------------------EIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGY 276 (464)
T ss_dssp --------------------HHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSS
T ss_pred --------------------HHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCC
Confidence 01123344456777764 67776432 3444 67 569999999999999987642
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g 436 (511)
. ..-.++..++++.+.+..++ .++.||+|++|..... ...+.+..|++.+|..+.|
T Consensus 277 ~---~~~~gl~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 277 G---LDKAGVALTDRKAIGVDDYM-RTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp C---HHHHTCCBCTTSSBCCCTTS-BCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred C---chhcCCccCCCCCEeECcCC-ccCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 1 01011111333445555443 3678999999987653 3457899999999999987
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-26 Score=234.47 Aligned_cols=300 Identities=14% Similarity=0.103 Sum_probs=184.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccC----CCCccccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQS----HRSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
.+||+|||||++|+++|..| .|++|+|+|+ +.+||+|... .+|...+.. +.....+..+.++.. ......
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 102 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYA--DPIFNW 102 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCC--CCEECH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccC--CCccCH
Confidence 47999999999999999999 8999999999 7899987641 122111100 000011112222111 011122
Q ss_pred HH-----------HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEE-eCCCCceeEEE
Q 010421 77 TE-----------ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQ-THNSNSIQRYG 144 (511)
Q Consensus 77 ~~-----------~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~ 144 (511)
.. +..++....++.++ .+..+ ++..++. +++.+. ++. .+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~i~~--------------------~~v~v~~~~~-----~~~ 154 (484)
T 3o0h_A 103 EKLVAAKNKEISRLEGLYREGLQNSNV--HIYES-RAVFVDE--------------------HTLELSVTGE-----RIS 154 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CEEEEET--------------------TEEEETTTCC-----EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-EEEEeeC--------------------CEEEEecCCe-----EEE
Confidence 22 22333444445555 34433 4444432 145554 222 789
Q ss_pred eCEEEEeecccCCCCC-CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCC
Q 010421 145 FEFLVVCTGKYGDVPI-IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGP 223 (511)
Q Consensus 145 ~d~vVlAtG~~~~~p~-~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 223 (511)
+|+||+|||. .|. .|.+| |.+. ++++.++..+ ...+++|+|||+|.+|+|+|..+++.+.+
T Consensus 155 ~d~lviAtG~---~p~~~p~i~---G~~~----~~~~~~~~~~-------~~~~~~v~ViGgG~~g~e~A~~l~~~g~~- 216 (484)
T 3o0h_A 155 AEKILIATGA---KIVSNSAIK---GSDL----CLTSNEIFDL-------EKLPKSIVIVGGGYIGVEFANIFHGLGVK- 216 (484)
T ss_dssp EEEEEECCCE---EECCC--CB---TGGG----SBCTTTGGGC-------SSCCSEEEEECCSHHHHHHHHHHHHTTCE-
T ss_pred eCEEEEccCC---CcccCCCCC---Cccc----cccHHHHHhH-------HhcCCcEEEECcCHHHHHHHHHHHHcCCe-
Confidence 9999999995 567 77777 6542 3444444332 24578999999999999999999988754
Q ss_pred CCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCC
Q 010421 224 EGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYG 303 (511)
Q Consensus 224 ~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (511)
|+++.|.+.. +|... ...
T Consensus 217 ----Vtli~~~~~~-l~~~~-----------~~~---------------------------------------------- 234 (484)
T 3o0h_A 217 ----TTLLHRGDLI-LRNFD-----------YDL---------------------------------------------- 234 (484)
T ss_dssp ----EEEECSSSSS-STTSC-----------HHH----------------------------------------------
T ss_pred ----EEEEECCCcc-ccccC-----------HHH----------------------------------------------
Confidence 9999998752 22221 000
Q ss_pred CCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEcCCceeeccEEEEecCCCCccccccc
Q 010421 304 LKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFEDNTKLEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 304 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~ 378 (511)
.+.+.+.+++.+|+++.+. |.+++.+ .|+++||+++++|.||+|||++++..++.
T Consensus 235 -------------------~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~- 294 (484)
T 3o0h_A 235 -------------------RQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLG- 294 (484)
T ss_dssp -------------------HHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCC-
T ss_pred -------------------HHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCC-
Confidence 0011123444567777754 7777654 37788998999999999999999876421
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
....++..++.+.+.+...+ .++.||||++|.... +...+.+..|++.+|..+.|.
T Consensus 295 --l~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 295 --LERAGVKVNEFGAVVVDEKM-TTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFEN 351 (484)
T ss_dssp --HHHHTCCBCTTSCBCCCTTS-BCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC-
T ss_pred --hhhcCceECCCCCEeECCCC-CCCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 01111212333444444433 377899999998765 344568999999999998764
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-26 Score=232.85 Aligned_cols=295 Identities=14% Similarity=0.107 Sum_probs=183.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCCh
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
|++.+||+|||||++|+++|..| .|. +|+|+|+++.++ |... ..++...... ...
T Consensus 1 M~~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~-------~~~~--~l~~~~~~~~------------~~~ 59 (431)
T 1q1r_A 1 MNANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP-------HHLP--PLSKAYLAGK------------ATA 59 (431)
T ss_dssp -CCSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC-------BCSG--GGGTTTTTTC------------SCS
T ss_pred CCCCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC-------CcCC--CCcHHHhCCC------------CCh
Confidence 66779999999999999999999 676 799999976542 2111 0011000000 000
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++.....++.++.++ .++++++|+.++.. + .+|.+.++. ++.||+||+|||.
T Consensus 60 ~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~----------------~--~~v~~~~g~-----~~~~d~lviAtG~-- 112 (431)
T 1q1r_A 60 ESLYLRTPDAYAAQNI--QLLGGTQVTAINRD----------------R--QQVILSDGR-----ALDYDRLVLATGG-- 112 (431)
T ss_dssp GGGBSSCHHHHHHTTE--EEECSCCEEEEETT----------------T--TEEEETTSC-----EEECSEEEECCCE--
T ss_pred HHhcccCHHHHHhCCC--EEEeCCEEEEEECC----------------C--CEEEECCCC-----EEECCEEEEcCCC--
Confidence 1110011233455677 78888999999862 1 257765543 7899999999995
Q ss_pred CCCCCCCCCCCCCCCcccc-e-EEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 157 DVPIIPAFPNNKGPEVFEG-Q-VLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 157 ~~p~~p~~~~~~g~~~~~g-~-~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.|+.|.+| |.+ ..+ . +.+.....+.. ........+++|+|||+|.+|+|+|..|++.+.+ |+++.|.
T Consensus 113 -~p~~~~i~---G~~-~~~~~~v~~~~~~~d~~-~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~-----Vtlv~~~ 181 (431)
T 1q1r_A 113 -RPRPLPVA---SGA-VGKANNFRYLRTLEDAE-CIRRQLIADNRLVVIGGGYIGLEVAATAIKANMH-----VTLLDTA 181 (431)
T ss_dssp -EECCCGGG---TTH-HHHSTTEEESSSHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSS
T ss_pred -CccCCCCC---Ccc-cCCCceEEEECCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCE-----EEEEEeC
Confidence 57788888 654 222 1 33322221110 0001224689999999999999999999988754 9999987
Q ss_pred CceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccc
Q 010421 235 THWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDY 314 (511)
Q Consensus 235 ~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 314 (511)
+.. +|+.. + ..+.
T Consensus 182 ~~~-l~~~~------~----~~~~-------------------------------------------------------- 194 (431)
T 1q1r_A 182 ARV-LERVT------A----PPVS-------------------------------------------------------- 194 (431)
T ss_dssp SST-TTTTS------C----HHHH--------------------------------------------------------
T ss_pred Ccc-ccchh------h----HHHH--------------------------------------------------------
Confidence 642 22110 0 0000
Q ss_pred ccccccccCCchhhhhccCeEEEEeCc-eeEEeC---C----cEEEcCCceeeccEEEEecCCCCcccccccCCCccccc
Q 010421 315 ASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK---G----GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSL 386 (511)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~---~----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~ 386 (511)
+.+.+.+++.+|+++.+. +.+++. + +|+++||+++++|.||+|||++++..+.+..+...
T Consensus 195 ---------~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~--- 262 (431)
T 1q1r_A 195 ---------AFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQV--- 262 (431)
T ss_dssp ---------HHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCB---
T ss_pred ---------HHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCC---
Confidence 001123344456777664 677754 2 37788999999999999999999876543222211
Q ss_pred ccCCCCcccceeeecCCCCCceEEEeecccch-----------hhhhHHHHHHHHHHHhcCCC
Q 010421 387 LEHPSGLLPLYRGTIHPLIPNMAFVGYIESVS-----------NLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 387 ~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~-----------~~~~~e~qa~~~a~~l~g~~ 438 (511)
+ +++.+...+ .++.||+|++|...... .+..+..||+.+|..+.|+.
T Consensus 263 --~--~gi~Vd~~~-~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 320 (431)
T 1q1r_A 263 --D--NGIVINEHM-QTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV 320 (431)
T ss_dssp --S--SSEECCTTS-BCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC
T ss_pred --C--CCEEECCCc-ccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC
Confidence 1 123333332 35789999999765421 34679999999999998753
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-26 Score=235.16 Aligned_cols=308 Identities=16% Similarity=0.139 Sum_probs=187.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc-----ccCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY-----EFTDFPWPNRDDPG 72 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 72 (511)
|+..+||+|||||++|+++|..| .|++|+|+|+++.+||+|... ..|...+......+ .+..+.++.. ...
T Consensus 2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~-~~~ 80 (478)
T 1v59_A 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVN-GDI 80 (478)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEEC-SCE
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccC-CCC
Confidence 44568999999999999999999 899999999999999988641 11111000000000 0010111000 000
Q ss_pred CCChHHHHHH-----------HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 73 FPSYTEILDY-----------LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 73 ~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
.....++..+ +...+++.++ .+++++.+.. + .+.++|.+.++. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~~-----~--------------~~~v~V~~~~G~---~~ 136 (478)
T 1v59_A 81 KINVANFQKAKDDAVKQLTGGIELLFKKNKV--TYYKGNGSFE-----D--------------ETKIRVTPVDGL---EG 136 (478)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEEEES-----S--------------SSEEEEECCTTC---TT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEEc-----c--------------CCeEEEEecCCC---cc
Confidence 1122333222 3344556666 6777765531 1 334555543331 11
Q ss_pred E------EEeCEEEEeecccCCCCCCCCCCCCCCCCcccc-eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHH
Q 010421 142 R------YGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEG-QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAK 214 (511)
Q Consensus 142 ~------~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g-~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~ 214 (511)
+ +.||+||+|||+. |. .+| |.+ +.+ .++++.+...+. ..+++|+|||+|.+|+|+|.
T Consensus 137 ~~~~~~~i~~d~lViAtGs~---p~--~~~---g~~-~~~~~v~~~~~~~~~~-------~~~~~vvViGgG~~g~e~A~ 200 (478)
T 1v59_A 137 TVKEDHILDVKNIIVATGSE---VT--PFP---GIE-IDEEKIVSSTGALSLK-------EIPKRLTIIGGGIIGLEMGS 200 (478)
T ss_dssp CCSSCEEEEEEEEEECCCEE---EC--CCT---TCC-CCSSSEECHHHHTTCS-------SCCSEEEEECCSHHHHHHHH
T ss_pred cccccceEEeCEEEECcCCC---CC--CCC---CCC-CCCceEEcHHHHHhhh-------ccCceEEEECCCHHHHHHHH
Confidence 4 8999999999965 32 234 333 222 467766665432 24799999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 010421 215 ECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLL 294 (511)
Q Consensus 215 ~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (511)
.|++.+.+ ||++.|++. ++|..+ ....
T Consensus 201 ~l~~~g~~-----Vtlv~~~~~-~l~~~~-----------~~~~------------------------------------ 227 (478)
T 1v59_A 201 VYSRLGSK-----VTVVEFQPQ-IGASMD-----------GEVA------------------------------------ 227 (478)
T ss_dssp HHHHTTCE-----EEEECSSSS-SSSSSC-----------HHHH------------------------------------
T ss_pred HHHHcCCE-----EEEEEeCCc-cccccC-----------HHHH------------------------------------
Confidence 99998754 999999875 333221 0000
Q ss_pred ccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc----EEEc-----CCceeeccE
Q 010421 295 WKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG----LEFE-----DNTKLEADV 362 (511)
Q Consensus 295 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~----v~~~-----dG~~~~~D~ 362 (511)
+.+.+.+++.+|+++.+. +.+++. ++ |+++ +|+++++|.
T Consensus 228 -----------------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~ 278 (478)
T 1v59_A 228 -----------------------------KATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEV 278 (478)
T ss_dssp -----------------------------HHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESE
T ss_pred -----------------------------HHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCE
Confidence 011123445567777764 677764 22 5555 456799999
Q ss_pred EEEecCCCCccc--ccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 363 VILCTGYDGKKK--LKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 363 VI~aTG~~~~~~--~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
||+|||++|+.. +++..+ +..++++.+.+...+ .++.||+|++|..... ...+.+..|++.+|..+.|.
T Consensus 279 vv~a~G~~p~~~~l~l~~~g-----~~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 350 (478)
T 1v59_A 279 LLVAVGRRPYIAGLGAEKIG-----LEVDKRGRLVIDDQF-NSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG 350 (478)
T ss_dssp EEECSCEEECCTTSCTTTTT-----CCBCTTSCBCCCTTS-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred EEECCCCCcCCCCCCchhcC-----ceeCCCCCEeECcCC-ccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999999999875 222111 111233445454443 3678999999987653 34568999999999988764
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=228.17 Aligned_cols=297 Identities=17% Similarity=0.203 Sum_probs=187.8
Q ss_pred CeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+||+|||||++|+++|..| . |.+|+|+|+++.++... +.+ +.. .... ... ...+++.
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~-------~~~--~~~---~~g~-~~~------~~~~~~~ 61 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLS-------CGI--ALY---LGKE-IKN------NDPRGLF 61 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCG-------GGH--HHH---HTTC-BGG------GCGGGGB
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccc-------ccc--hhh---hcCC-ccc------CCHHHhh
Confidence 4899999999999999999 4 99999999987654211 100 000 0000 000 0001111
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.++....+++++ .++++++|..++.. .+ +|.+.+..+++..++.||+||+|||. .|.
T Consensus 62 ~~~~~~~~~~gv--~~~~~~~v~~i~~~----------------~~--~v~v~~~~~g~~~~~~~d~lviAtGs---~p~ 118 (452)
T 2cdu_A 62 YSSPEELSNLGA--NVQMRHQVTNVDPE----------------TK--TIKVKDLITNEEKTEAYDKLIMTTGS---KPT 118 (452)
T ss_dssp SCCHHHHHHTTC--EEEESEEEEEEEGG----------------GT--EEEEEETTTCCEEEEECSEEEECCCE---EEC
T ss_pred hcCHHHHHHcCC--EEEeCCEEEEEEcC----------------CC--EEEEEecCCCceEEEECCEEEEccCC---CcC
Confidence 112333456777 78889999999862 22 35555532222337999999999994 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.|.+| |.+. ..++++..+.+..... .....+++|+|||+|.+|+|+|..+++.+.+ |+++.|.+. ++|
T Consensus 119 ~p~i~---g~~~--~~v~~~~~~~~~~~~~-~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~-----Vtlv~~~~~-~l~ 186 (452)
T 2cdu_A 119 VPPIP---GIDS--SRVYLCKNYNDAKKLF-EEAPKAKTITIIGSGYIGAELAEAYSNQNYN-----VNLIDGHER-VLY 186 (452)
T ss_dssp CCCCT---TTTS--TTEEECSSHHHHHHHH-HHGGGCSEEEEECCSHHHHHHHHHHHTTTCE-----EEEEESSSS-TTT
T ss_pred CCCCC---CCCC--CCEEEeCcHHHHHHHH-HHhccCCeEEEECcCHHHHHHHHHHHhcCCE-----EEEEEcCCc-hhh
Confidence 88888 6542 1366655543321100 1224689999999999999999999987654 999999875 222
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccccc
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMA 320 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 320 (511)
+.. + ..+
T Consensus 187 ~~~------~----~~~--------------------------------------------------------------- 193 (452)
T 2cdu_A 187 KYF------D----KEF--------------------------------------------------------------- 193 (452)
T ss_dssp TTS------C----HHH---------------------------------------------------------------
T ss_pred hhh------h----hhH---------------------------------------------------------------
Confidence 110 0 000
Q ss_pred ccCCchhhhhccCeEEEEeCc-eeEEeC-Cc-E--EEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCccc
Q 010421 321 IMPEGFFSEAEKGKIVFKRAS-KWWFWK-GG-L--EFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLP 395 (511)
Q Consensus 321 ~~~~~~~~~l~~g~v~v~~~~-i~~~~~-~~-v--~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
.+.+.+.+++.+|+++.+. +.+++. ++ + +..||+++++|.||+|||++++..+++.. +..+.++.+.
T Consensus 194 --~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~~------l~~~~~G~i~ 265 (452)
T 2cdu_A 194 --TDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGK------VAMLDNGAII 265 (452)
T ss_dssp --HHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTTT------SCBCTTSCBC
T ss_pred --HHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHHh------hhcCCCCCEE
Confidence 0011134455667887774 777764 33 3 34488889999999999999997653211 1112344455
Q ss_pred ceeeecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCC
Q 010421 396 LYRGTIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 396 ly~~~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 437 (511)
+..++ .++.||+|++|..... ...+.|..|++.+|..+.|.
T Consensus 266 Vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 317 (452)
T 2cdu_A 266 TDEYM-HSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTED 317 (452)
T ss_dssp CCTTS-BCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSC
T ss_pred ECCCc-CcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCC
Confidence 54443 3578999999976542 24578999999999999875
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=231.04 Aligned_cols=301 Identities=15% Similarity=0.163 Sum_probs=185.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCC----CCccccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSH----RSDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 76 (511)
.+||+|||||++|+++|..| .|++|+|+|++ .+||+|... ..|...+... .....+..+.++.. ......
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 96 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC--EGKFNW 96 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCC--CCCCCH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCC--CCccCH
Confidence 47999999999999999999 89999999975 889988541 1221111000 00011122222221 223345
Q ss_pred HHHHHHHHHHHH-----------hcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 77 TEILDYLESYAK-----------HFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 77 ~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
.++.+|.+.+.+ +.++ .+..+ ++..++ ...+.|. .++. ++.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~~~------------------~~~~~v~-~~g~-----~~~~ 149 (478)
T 3dk9_A 97 RVIKEKRDAYVSRLNAIYQNNLTKSHI--EIIRG-HAAFTS------------------DPKPTIE-VSGK-----KYTA 149 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CEEECS------------------CSSCEEE-ETTE-----EEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-EEEEee------------------CCeEEEE-ECCE-----EEEe
Confidence 555555444433 3333 23332 222211 2335565 2222 6899
Q ss_pred CEEEEeecccCCCCCCC---CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC
Q 010421 146 EFLVVCTGKYGDVPIIP---AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 146 d~vVlAtG~~~~~p~~p---~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
|+||+|||. .|..| ++| |.+ ...++.++..+. ..+++|+|||+|.+|+|+|..+++.+.+
T Consensus 150 d~lviAtG~---~p~~p~~~~i~---G~~----~~~~~~~~~~~~-------~~~~~vvViGgG~~g~E~A~~l~~~g~~ 212 (478)
T 3dk9_A 150 PHILIATGG---MPSTPHESQIP---GAS----LGITSDGFFQLE-------ELPGRSVIVGAGYIAVEMAGILSALGSK 212 (478)
T ss_dssp SCEEECCCE---EECCCCTTTST---TGG----GSBCHHHHTTCC-------SCCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred eEEEEccCC---CCCCCCcCCCC---CCc----eeEchHHhhchh-------hcCccEEEECCCHHHHHHHHHHHHcCCe
Confidence 999999994 67777 777 655 234555554422 3478999999999999999999998764
Q ss_pred CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccC
Q 010421 223 PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKY 302 (511)
Q Consensus 223 ~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
|+++.|.+..+ |..+ ... .
T Consensus 213 -----Vtlv~~~~~~l-~~~d-----------~~~----------------------------~---------------- 231 (478)
T 3dk9_A 213 -----TSLMIRHDKVL-RSFD-----------SMI----------------------------S---------------- 231 (478)
T ss_dssp -----EEEECSSSSSC-TTSC-----------HHH----------------------------H----------------
T ss_pred -----EEEEEeCCccc-cccC-----------HHH----------------------------H----------------
Confidence 99999987633 3322 000 0
Q ss_pred CCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc----EEEcC---C----ceeeccEEEEecC
Q 010421 303 GLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG----LEFED---N----TKLEADVVILCTG 368 (511)
Q Consensus 303 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~----v~~~d---G----~~~~~D~VI~aTG 368 (511)
+.+.+.+++.+|+++.+. +.+++. ++ |.+.| | +++++|.||+|||
T Consensus 232 ---------------------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G 290 (478)
T 3dk9_A 232 ---------------------TNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 290 (478)
T ss_dssp ---------------------HHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred ---------------------HHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeec
Confidence 011123445567777764 666653 33 45655 2 5689999999999
Q ss_pred CCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 369 YDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
++++...+. ..-.++..++++.+.+...+ .++.||+|++|.... +...+.+..|++.+|..+.|.
T Consensus 291 ~~p~~~~l~---l~~~g~~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 291 RVPNTKDLS---LNKLGIQTDDKGHIIVDEFQ-NTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp EEESCTTSC---GGGGTCCBCTTCCBCCCTTC-BCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCCCC---chhcCCeeCCCCCEeeCCCc-ccCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence 999875211 11111212334445454433 467899999998763 344678999999999998765
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-25 Score=226.31 Aligned_cols=295 Identities=17% Similarity=0.203 Sum_probs=186.7
Q ss_pred CeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+||+|||||++|+++|..| . +.+|+|+|+++.+|.. . +.+ + .+.. ......+++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~--~-----~~~--~----~~~~--------~~~~~~~~~~ 59 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL--S-----AGM--Q----LYLE--------GKVKDVNSVR 59 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC--G-----GGH--H----HHHT--------TSSCCGGGSB
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc--c-----ccc--h----hhhc--------CccCCHHHhh
Confidence 4899999999999999999 4 8999999998766411 1 100 0 0000 0001111112
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.++....+++++ .++++++|..++.. .+ +|.+.+..+++..++.||+||+|||. .|.
T Consensus 60 ~~~~~~~~~~gv--~~~~~~~v~~i~~~----------------~~--~v~~~~~~~g~~~~~~~d~lviAtG~---~p~ 116 (447)
T 1nhp_A 60 YMTGEKMESRGV--NVFSNTEITAIQPK----------------EH--QVTVKDLVSGEERVENYDKLIISPGA---VPF 116 (447)
T ss_dssp SCCHHHHHHTTC--EEEETEEEEEEETT----------------TT--EEEEEETTTCCEEEEECSEEEECCCE---EEC
T ss_pred cCCHHHHHHCCC--EEEECCEEEEEeCC----------------CC--EEEEEecCCCceEEEeCCEEEEcCCC---CcC
Confidence 222334455677 78889999998862 22 46665522233335899999999994 578
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhcc--CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLL--KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~--~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
.|.+| |.+. . .++++..+.+..... .... .+++|+|||+|.+|+|+|..+++.+.+ |+++.|.+. +
T Consensus 117 ~p~i~---G~~~-~-~v~~~~~~~~~~~l~-~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~-----Vtlv~~~~~-~ 184 (447)
T 1nhp_A 117 ELDIP---GKDL-D-NIYLMRGRQWAIKLK-QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKK-----VTVIDILDR-P 184 (447)
T ss_dssp CCCST---TTTS-B-SEECCCHHHHHHHHH-HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSS-T
T ss_pred CCCCC---CCCC-C-CeEEECCHHHHHHHH-HHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCe-----EEEEecCcc-c
Confidence 88888 6542 2 366655543311000 1112 689999999999999999999988754 999999764 2
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
+++.. + ..
T Consensus 185 l~~~~------~----~~-------------------------------------------------------------- 192 (447)
T 1nhp_A 185 LGVYL------D----KE-------------------------------------------------------------- 192 (447)
T ss_dssp TTTTC------C----HH--------------------------------------------------------------
T ss_pred ccccC------C----HH--------------------------------------------------------------
Confidence 22110 0 00
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCCc-E--EEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG-L--EFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~-v--~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
+.+.+.+.+++.+|+++.+. +.+++.++ + +..+|+++++|.||+|||++++..+.+.. +..+.++.+
T Consensus 193 ---~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~d~vi~a~G~~p~~~~~~~~------~~~~~~G~i 263 (447)
T 1nhp_A 193 ---FTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGT------LELHPNGLI 263 (447)
T ss_dssp ---HHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECSCEEESCGGGTTT------SCBCTTSCB
T ss_pred ---HHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEECCCEEECCEEEECcCCCCChHHHHhh------hhhcCCCcE
Confidence 00111234556678888864 77887543 2 33367789999999999999987653211 111233434
Q ss_pred cceeeecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCC
Q 010421 395 PLYRGTIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 437 (511)
.+...+ .++.||+|++|..... ...+.+..|++.+|..+.|.
T Consensus 264 ~Vd~~~-~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 316 (447)
T 1nhp_A 264 KTDEYM-RTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEP 316 (447)
T ss_dssp CCCTTC-BCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSC
T ss_pred EECccc-cCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCC
Confidence 444433 3578999999976542 23578999999999999875
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-26 Score=235.29 Aligned_cols=304 Identities=14% Similarity=0.072 Sum_probs=183.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-CCcCceeccCCC----CccccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHR----SDYEFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 76 (511)
.+||+|||||++|+++|..| .|++|+|+|++ .+||+|.. ...|...+..+. ....++.+.++.. ......
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 84 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVD--RISVNG 84 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECS--EEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCC--CCccCH
Confidence 37999999999999999999 89999999996 59998753 112221110000 0001112222111 112355
Q ss_pred HHHHHHHHHHHHhcCC---------CCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 77 TEILDYLESYAKHFDV---------FKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~---------~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
.++.+++..+.+++.. ...-.+..+..- .+.++|.+.++. ++.||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~--------------------~~~~~v~~~~~~-----~~~~d~ 139 (492)
T 3ic9_A 85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKF--------------------LDEHTLQVDDHS-----QVIAKR 139 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEE--------------------EETTEEEETTTE-----EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEE--------------------ecCCEEEEcCCc-----EEEeCE
Confidence 6677776665554321 000011111111 122356664432 799999
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCc
Q 010421 148 LVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQP 227 (511)
Q Consensus 148 vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~ 227 (511)
||+||| +.|..|.++ +.. ...++++.++..+ ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 140 lViATG---s~p~~p~~~---~~~--~~~v~t~~~~~~~-------~~~~k~vvViGgG~ig~E~A~~l~~~g~~----- 199 (492)
T 3ic9_A 140 IVIATG---SRPNYPEFL---AAA--GSRLLTNDNLFEL-------NDLPKSVAVFGPGVIGLELGQALSRLGVI----- 199 (492)
T ss_dssp EEECCC---EECCCCHHH---HTT--GGGEECHHHHTTC-------SSCCSEEEEESSCHHHHHHHHHHHHTTCE-----
T ss_pred EEEccC---CCCcCCCCC---Ccc--CCcEEcHHHHhhh-------hhcCCeEEEECCCHHHHHHHHHHHHcCCe-----
Confidence 999999 467888765 322 2346666665442 24589999999999999999999998764
Q ss_pred EEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCC
Q 010421 228 CTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPD 307 (511)
Q Consensus 228 Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 307 (511)
|+++.|++.. +|..+ . .. .
T Consensus 200 Vtlv~~~~~~-l~~~d-------~----~~----------------------------~--------------------- 218 (492)
T 3ic9_A 200 VKVFGRSGSV-ANLQD-------E----EM----------------------------K--------------------- 218 (492)
T ss_dssp EEEECCTTCC-TTCCC-------H----HH----------------------------H---------------------
T ss_pred EEEEEECCcc-cccCC-------H----HH----------------------------H---------------------
Confidence 9999998763 23221 0 00 0
Q ss_pred CccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEc--CC--ceeeccEEEEecCCCCccccccc
Q 010421 308 HPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFE--DN--TKLEADVVILCTGYDGKKKLKAF 378 (511)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~--dG--~~~~~D~VI~aTG~~~~~~~~~~ 378 (511)
+.+.+.+++. |+++.+. +.+++. ++ +.+. || +++++|.||+|||++|+..++.
T Consensus 219 ----------------~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~- 280 (492)
T 3ic9_A 219 ----------------RYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLG- 280 (492)
T ss_dssp ----------------HHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSC-
T ss_pred ----------------HHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCC-
Confidence 0011234444 6666654 666643 33 4454 67 5699999999999999876521
Q ss_pred CCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcC
Q 010421 379 LPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g 436 (511)
..-.++..++++.+.+....+.++.||+|++|..... ...+.+..|++.+|..+.+
T Consensus 281 --l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 281 --LENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp --GGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred --hhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 1111122233344433312234578999999987654 3456899999999998865
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-25 Score=227.30 Aligned_cols=307 Identities=15% Similarity=0.149 Sum_probs=188.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc-c--CCCcEEEc--------CCCCcCccccCC-CcCceeccCCCCc----cccCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL-R--HHNPVVFE--------ASDSIGGIWKSC-SYNSTKLQSHRSD----YEFTDFPWP 66 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l-~--g~~v~v~e--------~~~~~GG~w~~~-~~~~~~~~~~~~~----~~~~~~~~~ 66 (511)
..+||+|||||++|+++|..| . |++|+|+| +...+||+|... .+|...+...... .....+.+.
T Consensus 2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~ 81 (490)
T 1fec_A 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE 81 (490)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence 458999999999999999999 5 89999999 357899988641 1222111000000 001111111
Q ss_pred CCCCCC--CCChHHHHHHH-----------HHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEE
Q 010421 67 NRDDPG--FPSYTEILDYL-----------ESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAV 132 (511)
Q Consensus 67 ~~~~~~--~~~~~~~~~yl-----------~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (511)
.. .. .....++.++. ....++. ++ .+..+ ++..++. . ++.+
T Consensus 82 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g-~~~~i~~------------------~--~v~v 136 (490)
T 1fec_A 82 LD--RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGL--TFHQG-FGALQDN------------------H--TVLV 136 (490)
T ss_dssp CC--GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTE--EEEES-EEEEEET------------------T--EEEE
T ss_pred cC--CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEe-EEEEeeC------------------C--EEEE
Confidence 00 00 11233333332 2333444 55 45544 3555542 1 3555
Q ss_pred EeC--CCCc-eeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCH
Q 010421 133 QTH--NSNS-IQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSA 209 (511)
Q Consensus 133 ~~~--~~~~-~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg 209 (511)
.+. .+++ ...+.||+||+|||+ .|..|.+| |.+ .++++.++..+. ..+++|+|||+|.+|
T Consensus 137 ~~~~~~~g~~~~~~~~d~lviAtGs---~p~~p~i~---g~~----~~~~~~~~~~~~-------~~~~~vvViGgG~ig 199 (490)
T 1fec_A 137 RESADPNSAVLETLDTEYILLATGS---WPQHLGIE---GDD----LCITSNEAFYLD-------EAPKRALCVGGGYIS 199 (490)
T ss_dssp ESSSSTTSCEEEEEEEEEEEECCCE---EECCCCSB---TGG----GCBCHHHHTTCS-------SCCSEEEEECSSHHH
T ss_pred EeeccCCCCceEEEEcCEEEEeCCC---CCCCCCCC---Ccc----ceecHHHHhhhh-------hcCCeEEEECCCHHH
Confidence 431 1121 137899999999994 57788787 653 244555544321 357899999999999
Q ss_pred HHHHHHHHHh---cCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHH
Q 010421 210 IDLAKECAES---NQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVS 286 (511)
Q Consensus 210 ~d~a~~l~~~---~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (511)
+|+|..|++. +. +|+++.|.+. ++|..+ ...
T Consensus 200 ~E~A~~l~~~~~~g~-----~Vtlv~~~~~-~l~~~d-----------~~~----------------------------- 233 (490)
T 1fec_A 200 IEFAGIFNAYKARGG-----QVDLAYRGDM-ILRGFD-----------SEL----------------------------- 233 (490)
T ss_dssp HHHHHHHHHHSCTTC-----EEEEEESSSS-SSTTSC-----------HHH-----------------------------
T ss_pred HHHHHHHHhhccCcC-----eEEEEEcCCC-cccccC-----------HHH-----------------------------
Confidence 9999999998 65 4999999875 333321 000
Q ss_pred HHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC-----cEEEcCCceeec
Q 010421 287 KFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG-----GLEFEDNTKLEA 360 (511)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----~v~~~dG~~~~~ 360 (511)
...+.+.+++.+|+++.+. +.+++.+ .|+++||+++++
T Consensus 234 ------------------------------------~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~ 277 (490)
T 1fec_A 234 ------------------------------------RKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADY 277 (490)
T ss_dssp ------------------------------------HHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred ------------------------------------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEc
Confidence 0011234556678888874 7777643 367789989999
Q ss_pred cEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 361 DVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 361 D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
|.||+|||++++...+ ...-.++..++++.+.+...+ .++.||+|++|.... +...+.+..|++.+|..+.|.
T Consensus 278 D~vv~a~G~~p~~~~L---~l~~~gl~~~~~G~I~Vd~~~-~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 351 (490)
T 1fec_A 278 DVVMLAIGRVPRSQTL---QLEKAGVEVAKNGAIKVDAYS-KTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN 351 (490)
T ss_dssp SEEEECSCEEESCTTS---CGGGGTCCBCTTSCBCCCTTC-BCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CEEEEccCCCcCcccc---CchhcCccCCCCCCEEECCCC-ccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 9999999999987521 001111112334445554443 357899999998765 335678999999999988764
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-25 Score=225.62 Aligned_cols=299 Identities=17% Similarity=0.166 Sum_probs=184.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc----ccCCCCCCCCCCCCCCCh
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY----EFTDFPWPNRDDPGFPSY 76 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (511)
.+||+|||||++|+++|..| .|.+|+|+|++. +||+|... ..|...+......+ .+..+.++. ......
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~---~~~~~~ 81 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKA---KPELDL 81 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEEC---CCEECH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCC---CCCcCH
Confidence 47999999999999999999 899999999976 99988541 11211100000000 011111110 011122
Q ss_pred HHH-------HHH----HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEe
Q 010421 77 TEI-------LDY----LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGF 145 (511)
Q Consensus 77 ~~~-------~~y----l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (511)
.++ .++ +....++.++ .+..++.+ .++. ++|.+. +. ++.|
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~-~~~~--------------------~~v~v~-g~-----~~~~ 132 (464)
T 2eq6_A 82 KKLGGWRDQVVKKLTGGVGTLLKGNGV--ELLRGFAR-LVGP--------------------KEVEVG-GE-----RYGA 132 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESCEE-EEET--------------------TEEEET-TE-----EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEeeeEE-EccC--------------------CEEEEc-cE-----EEEe
Confidence 222 222 2334455666 56666543 2321 145554 22 7899
Q ss_pred CEEEEeecccCCCCCCCC-CCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCC
Q 010421 146 EFLVVCTGKYGDVPIIPA-FPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPE 224 (511)
Q Consensus 146 d~vVlAtG~~~~~p~~p~-~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 224 (511)
|+||+|||+ .|..|+ ++ +. +.++++.++..+. ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 133 d~lViATGs---~p~~p~gi~---~~----~~v~~~~~~~~l~------~~~~~~vvViGgG~~g~e~A~~l~~~g~~-- 194 (464)
T 2eq6_A 133 KSLILATGS---EPLELKGFP---FG----EDVWDSTRALKVE------EGLPKRLLVIGGGAVGLELGQVYRRLGAE-- 194 (464)
T ss_dssp EEEEECCCE---EECCBTTBC---CS----SSEECHHHHTCGG------GCCCSEEEEECCSHHHHHHHHHHHHTTCE--
T ss_pred CEEEEcCCC---CCCCCCCCC---CC----CcEEcHHHHHhhh------hhcCCEEEEECCCHHHHHHHHHHHHCCCe--
Confidence 999999995 567664 65 42 1466776665432 22578999999999999999999988754
Q ss_pred CCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCC
Q 010421 225 GQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304 (511)
Q Consensus 225 ~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (511)
|+++.|.+. ++|... ..+ .
T Consensus 195 ---Vtlv~~~~~-~l~~~~-----------~~~----------------------------~------------------ 213 (464)
T 2eq6_A 195 ---VTLIEYMPE-ILPQGD-----------PET----------------------------A------------------ 213 (464)
T ss_dssp ---EEEECSSSS-SSTTSC-----------HHH----------------------------H------------------
T ss_pred ---EEEEEcCCc-cccccC-----------HHH----------------------------H------------------
Confidence 999999875 333221 000 0
Q ss_pred CCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEc-C--Cc--eeeccEEEEecCCCCccc
Q 010421 305 KPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFE-D--NT--KLEADVVILCTGYDGKKK 374 (511)
Q Consensus 305 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~-d--G~--~~~~D~VI~aTG~~~~~~ 374 (511)
+.+.+.+++.+|+++.+. +.+++.+ + |.++ | |+ ++++|.||+|||++++..
T Consensus 214 -------------------~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 274 (464)
T 2eq6_A 214 -------------------ALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE 274 (464)
T ss_dssp -------------------HHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred -------------------HHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence 011123445567777764 6676543 2 5565 6 87 799999999999999876
Q ss_pred ccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 375 LKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
++. ....++..++++.+.+...+ .++.||+|++|..... ...+.+..|++.+|..+.|.
T Consensus 275 ~l~---l~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 334 (464)
T 2eq6_A 275 GLG---LEKAGVKVDERGFIRVNARM-ETSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGK 334 (464)
T ss_dssp TSS---HHHHTCCBCTTSCBCCCTTC-BCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CCC---hhhcCceecCCCCEEECCCc-ccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 421 01011111233445454443 3678999999987653 34568999999999999874
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-25 Score=230.15 Aligned_cols=303 Identities=16% Similarity=0.140 Sum_probs=182.7
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCcc---ccCCCCCCCCCCCCCCChHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDY---EFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 78 (511)
+||+|||||++|+++|..| .|++|+|+|+++.+||+|... ..|...+......+ ....+.++.. .......+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~--~~~~~~~~ 79 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVK--GVELDLPA 79 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEEC--CEEECHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccC--CCccCHHH
Confidence 6999999999999999999 899999999998999998641 11211110000000 0011111100 00112222
Q ss_pred HHHH-----------HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 79 ILDY-----------LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 79 ~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
+..+ +...+++.++ .+..++.+ .+ + ...+.|.. ++ . ++.||+
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~~-~i----~--------------~~~~~v~~-~g---~--~~~~d~ 132 (455)
T 2yqu_A 80 LMAHKDKVVQANTQGVEFLFKKNGI--ARHQGTAR-FL----S--------------ERKVLVEE-TG---E--ELEARY 132 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCEE-ES----S--------------SSEEEETT-TC---C--EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEE-Ee----c--------------CCeEEEee-CC---E--EEEecE
Confidence 2222 3344555666 55655432 11 1 22333322 22 2 789999
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCc
Q 010421 148 LVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQP 227 (511)
Q Consensus 148 vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~ 227 (511)
||+|||+ .|..|.++ |.+. ..++++.++..+. ..+++|+|||+|.+|+|+|..|++.+.+
T Consensus 133 lviAtG~---~p~~~~~~---g~~~--~~v~~~~~~~~~~-------~~~~~vvIiGgG~~g~e~A~~l~~~g~~----- 192 (455)
T 2yqu_A 133 ILIATGS---APLIPPWA---QVDY--ERVVTSTEALSFP-------EVPKRLIVVGGGVIGLELGVVWHRLGAE----- 192 (455)
T ss_dssp EEECCCE---EECCCTTB---CCCS--SSEECHHHHTCCS-------SCCSEEEEECCSHHHHHHHHHHHHTTCE-----
T ss_pred EEECCCC---CCCCCCCC---CCCc--CcEechHHhhccc-------cCCCeEEEECCCHHHHHHHHHHHHcCCE-----
Confidence 9999995 57777776 5332 1366766654422 3568999999999999999999988754
Q ss_pred EEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCC
Q 010421 228 CTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPD 307 (511)
Q Consensus 228 Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 307 (511)
|+++.+.+. ++|... ..+.
T Consensus 193 V~lv~~~~~-~l~~~~-----------~~~~------------------------------------------------- 211 (455)
T 2yqu_A 193 VIVLEYMDR-ILPTMD-----------LEVS------------------------------------------------- 211 (455)
T ss_dssp EEEECSSSS-SCTTSC-----------HHHH-------------------------------------------------
T ss_pred EEEEecCCc-cccccC-----------HHHH-------------------------------------------------
Confidence 999999875 233221 0000
Q ss_pred CccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCCcccccccCCCc
Q 010421 308 HPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEP 382 (511)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~ 382 (511)
+.+.+.+++.+|+++.+. +.+++. ++ +.++||+++++|.||+|||++++..++. .+
T Consensus 212 ----------------~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~---~~ 272 (455)
T 2yqu_A 212 ----------------RAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLS---LE 272 (455)
T ss_dssp ----------------HHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCC---GG
T ss_pred ----------------HHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCC---hh
Confidence 001122333456777653 666653 23 4456888899999999999999875421 11
Q ss_pred ccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 383 FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 383 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
..++..+.++.+.+...+ .++.|++|++|..... ...+.+..|++.+|..+.|+
T Consensus 273 ~~g~~~~~~g~i~vd~~~-~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 327 (455)
T 2yqu_A 273 NAGLSTDERGRIPVDEHL-RTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRG 327 (455)
T ss_dssp GGTCCCCTTSCCCCCTTS-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred hcCCccCCCCcEeECCCc-ccCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCC
Confidence 111111223334444443 3678999999977553 33567999999999998764
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-25 Score=227.15 Aligned_cols=298 Identities=18% Similarity=0.186 Sum_probs=183.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCC----ccccCC---CCCCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRS----DYEFTD---FPWPNRDDPGF 73 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~ 73 (511)
.+||+|||||++|+++|..| .|.+|+|+|+ +.+||+|... ..|...+..... ...+.. +.++.. ...
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 81 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVA--SPR 81 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC--CCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccC--CCc
Confidence 47999999999999999999 8999999999 7899998641 122111000000 001111 222211 112
Q ss_pred CChHHHHHH-----------HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE
Q 010421 74 PSYTEILDY-----------LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR 142 (511)
Q Consensus 74 ~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 142 (511)
....++..+ +..+.++.++ .++.++.+. ++. ++|.+.+ .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~~~-~~~--------------------~~v~v~~------~~ 132 (458)
T 1lvl_A 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGV--KVVHGWAKV-LDG--------------------KQVEVDG------QR 132 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECSCEEE-EET--------------------TEEEETT------EE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEEEEEE-ccC--------------------CEEEEee------EE
Confidence 233444333 2344556666 566665433 221 2465543 27
Q ss_pred EEeCEEEEeecccCCCCCCCC-CCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 143 YGFEFLVVCTGKYGDVPIIPA-FPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 143 ~~~d~vVlAtG~~~~~p~~p~-~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
+.||+||+|||+ .|..|+ ++ . .+.++++.++..+. ..+++|+|||+|.+|+|+|..|++.+.
T Consensus 133 ~~~d~lviATGs---~p~~~~~~~---~----~~~v~~~~~~~~~~-------~~~~~vvViGgG~~g~e~A~~l~~~g~ 195 (458)
T 1lvl_A 133 IQCEHLLLATGS---SSVELPMLP---L----GGPVISSTEALAPK-------ALPQHLVVVGGGYIGLELGIAYRKLGA 195 (458)
T ss_dssp EECSEEEECCCE---EECCBTTBC---C----BTTEECHHHHTCCS-------SCCSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred EEeCEEEEeCCC---CCCCCCCCC---c----cCcEecHHHHhhhh-------ccCCeEEEECcCHHHHHHHHHHHHCCC
Confidence 899999999995 466554 43 1 12467776665432 257899999999999999999999876
Q ss_pred CCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCccc
Q 010421 222 GPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLK 301 (511)
Q Consensus 222 ~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+ |+++.|.+. ++|... ....
T Consensus 196 ~-----Vtlv~~~~~-~l~~~~-----------~~~~------------------------------------------- 215 (458)
T 1lvl_A 196 Q-----VSVVEARER-ILPTYD-----------SELT------------------------------------------- 215 (458)
T ss_dssp E-----EEEECSSSS-SSTTSC-----------HHHH-------------------------------------------
T ss_pred e-----EEEEEcCCc-cccccC-----------HHHH-------------------------------------------
Confidence 4 999999875 333221 0000
Q ss_pred CCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEc--CC--ceeeccEEEEecCCCCccccc
Q 010421 302 YGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFE--DN--TKLEADVVILCTGYDGKKKLK 376 (511)
Q Consensus 302 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~--dG--~~~~~D~VI~aTG~~~~~~~~ 376 (511)
+.+.+.+++.+|+++.+. +.+++.+++.+. +| +++++|.||+|||++++..++
T Consensus 216 ----------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l 273 (458)
T 1lvl_A 216 ----------------------APVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGF 273 (458)
T ss_dssp ----------------------HHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSSS
T ss_pred ----------------------HHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCCC
Confidence 001122334456676664 677765335444 67 579999999999999987642
Q ss_pred ccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCC
Q 010421 377 AFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 437 (511)
. ....++..+.. .+.+...+ .++.||+|++|..... ...+.+..|++.+|..+.|+
T Consensus 274 ~---~~~~g~~~~~~-~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 330 (458)
T 1lvl_A 274 N---LECLDLKMNGA-AIAIDERC-QTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK 330 (458)
T ss_dssp S---GGGSCCCEETT-EECCCTTC-BCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred C---cHhcCCcccCC-EEeECCCC-cCCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 1 01011111122 34444433 3678999999987653 34568999999999999874
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=224.07 Aligned_cols=307 Identities=17% Similarity=0.160 Sum_probs=186.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcC--------CCCcCccccCC-CcCceeccCCCC----ccccCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEA--------SDSIGGIWKSC-SYNSTKLQSHRS----DYEFTDFPWPN 67 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~--------~~~~GG~w~~~-~~~~~~~~~~~~----~~~~~~~~~~~ 67 (511)
+.+||+|||||++|+++|..| .|.+|+|+|+ ...+||+|... .+|...+..+.. ......+.+..
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~ 84 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV 84 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence 358999999999999999999 8999999997 56799998651 122211100000 00111222221
Q ss_pred CCCCCCCChHHHHHHHHHHHHh-----------cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC
Q 010421 68 RDDPGFPSYTEILDYLESYAKH-----------FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN 136 (511)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (511)
. ........++..+.+.+.++ .++ .+ +..++..++ .. .+.+...
T Consensus 85 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~~-i~g~~~~~~------------------~~--~v~v~~~- 139 (488)
T 3dgz_A 85 A-QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKV--KY-FNIKASFVD------------------EH--TVRGVDK- 139 (488)
T ss_dssp C-SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ECCEEEESS------------------SS--EEEEECT-
T ss_pred C-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EE-EEEEEEEcc------------------CC--eEEEEeC-
Confidence 1 12234555666665544432 222 11 222322211 22 3444432
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCC-CCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHH
Q 010421 137 SNSIQRYGFEFLVVCTGKYGDVPIIPA-FPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKE 215 (511)
Q Consensus 137 ~~~~~~~~~d~vVlAtG~~~~~p~~p~-~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~ 215 (511)
++...++.||+||+||| +.|..|. +| |.+. ..+++.++..+ ...+++|+|||+|.+|+|+|..
T Consensus 140 ~g~~~~~~~d~lViATG---s~p~~p~~i~---G~~~---~~~~~~~~~~~-------~~~~~~vvViGgG~ig~E~A~~ 203 (488)
T 3dgz_A 140 GGKATLLSAEHIVIATG---GRPRYPTQVK---GALE---YGITSDDIFWL-------KESPGKTLVVGASYVALECAGF 203 (488)
T ss_dssp TSCEEEEEEEEEEECCC---EEECCCSSCB---THHH---HCBCHHHHTTC-------SSCCCSEEEECCSHHHHHHHHH
T ss_pred CCceEEEECCEEEEcCC---CCCCCCCCCC---Cccc---ccCcHHHHHhh-------hhcCCeEEEECCCHHHHHHHHH
Confidence 23344799999999999 4688887 88 6532 23455554432 2356899999999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhc
Q 010421 216 CAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLW 295 (511)
Q Consensus 216 l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (511)
+++.+.+ ||++.|+. ++|..+ . .+ .
T Consensus 204 l~~~g~~-----Vtlv~~~~--~l~~~d-------~----~~----------------------------~--------- 228 (488)
T 3dgz_A 204 LTGIGLD-----TTVMMRSI--PLRGFD-------Q----QM----------------------------S--------- 228 (488)
T ss_dssp HHHTTCC-----EEEEESSC--SSTTSC-------H----HH----------------------------H---------
T ss_pred HHHcCCc-----eEEEEcCc--ccccCC-------H----HH----------------------------H---------
Confidence 9998765 99999864 233221 0 00 0
Q ss_pred cCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc---EEEcC---Cc--eeeccEEE
Q 010421 296 KLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG---LEFED---NT--KLEADVVI 364 (511)
Q Consensus 296 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~---v~~~d---G~--~~~~D~VI 364 (511)
+.+.+.+++.+|+++.+. +.+++. ++ |++.+ |+ ++++|.||
T Consensus 229 ----------------------------~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi 280 (488)
T 3dgz_A 229 ----------------------------SLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVL 280 (488)
T ss_dssp ----------------------------HHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEE
T ss_pred ----------------------------HHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEE
Confidence 011123455567777764 666643 22 55554 55 37899999
Q ss_pred EecCCCCcccccccCCCcccccccC-CCCcccceeeecCCCCCceEEEeecc-c-chhhhhHHHHHHHHHHHhcCC
Q 010421 365 LCTGYDGKKKLKAFLPEPFQSLLEH-PSGLLPLYRGTIHPLIPNMAFVGYIE-S-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 365 ~aTG~~~~~~~~~~~~~~~~~~~~~-~~~~~~ly~~~~~~~~pnl~~iG~~~-~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+|||++|+..++.. .-.++..+ +++.+.+..++ .++.||||++|... . +...+.+..|++.+|..+.|.
T Consensus 281 ~a~G~~p~~~~l~l---~~~g~~~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (488)
T 3dgz_A 281 WAIGRVPETRTLNL---EKAGISTNPKNQKIIVDAQE-ATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGK 352 (488)
T ss_dssp ECSCEEESCGGGTG---GGGTCCBCSSSCCBCCCTTS-BCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred EcccCCcccCcCCc---cccCcEecCCCCeEeECCCC-ccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence 99999998765321 11112223 34445554443 35789999999875 2 344578999999999998764
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=223.56 Aligned_cols=309 Identities=14% Similarity=0.088 Sum_probs=184.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC------cCccccCC-CcCceeccCCCCcc-----ccCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS------IGGIWKSC-SYNSTKLQSHRSDY-----EFTDFPWPNR 68 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~------~GG~w~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~ 68 (511)
+.+||+|||||++|+++|..| .|++|+|+|++.. +||+|... ..|...+......+ .+..+.++..
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 81 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 468999999999999999999 8999999999874 55555331 11111100000000 0111111100
Q ss_pred CCCCCCChHHHHHHHH-----------HHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC
Q 010421 69 DDPGFPSYTEILDYLE-----------SYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS 137 (511)
Q Consensus 69 ~~~~~~~~~~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (511)
........+..+.. ...++.++ .+..++ +..++ ...+.|...+
T Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~~------------------~~~~~v~~~~--- 135 (476)
T 3lad_A 82 --EVAIDVPTMIARKDQIVRNLTGGVASLIKANGV--TLFEGH-GKLLA------------------GKKVEVTAAD--- 135 (476)
T ss_dssp --CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESE-EEECS------------------TTCEEEECTT---
T ss_pred --CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEec------------------CCEEEEEcCC---
Confidence 11122333333322 33344455 444433 22211 3344454322
Q ss_pred CceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHH
Q 010421 138 NSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECA 217 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~ 217 (511)
+....+.||+||+|||. .|..|..+ +.+ ...++++.+...+ ...+++|+|||+|.+|+|+|..++
T Consensus 136 g~~~~~~~d~lvlAtG~---~p~~~~~~---~~~--~~~v~~~~~~~~~-------~~~~~~v~ViGgG~~g~e~A~~l~ 200 (476)
T 3lad_A 136 GSSQVLDTENVILASGS---KPVEIPPA---PVD--QDVIVDSTGALDF-------QNVPGKLGVIGAGVIGLELGSVWA 200 (476)
T ss_dssp SCEEEECCSCEEECCCE---EECCCTTS---CCC--SSSEEEHHHHTSC-------SSCCSEEEEECCSHHHHHHHHHHH
T ss_pred CceEEEEcCEEEEcCCC---CCCCCCCC---CCC--cccEEechhhhcc-------ccCCCeEEEECCCHHHHHHHHHHH
Confidence 33347899999999995 45655433 211 2246676665542 246789999999999999999999
Q ss_pred HhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccC
Q 010421 218 ESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKL 297 (511)
Q Consensus 218 ~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (511)
+.+.+ |+++.|.+. ++|... ..
T Consensus 201 ~~g~~-----Vtlv~~~~~-~l~~~~-----------~~----------------------------------------- 222 (476)
T 3lad_A 201 RLGAE-----VTVLEAMDK-FLPAVD-----------EQ----------------------------------------- 222 (476)
T ss_dssp HTTCE-----EEEEESSSS-SSTTSC-----------HH-----------------------------------------
T ss_pred HcCCc-----EEEEecCCC-cCcccC-----------HH-----------------------------------------
Confidence 88764 999999875 233221 00
Q ss_pred CcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--EEEcCC---ceeeccEEEEecCC
Q 010421 298 PLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G--LEFEDN---TKLEADVVILCTGY 369 (511)
Q Consensus 298 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~--v~~~dG---~~~~~D~VI~aTG~ 369 (511)
+.+.+.+.+++.+|+++.+. +.+++.+ + +++.++ +++++|.||+|||+
T Consensus 223 ------------------------~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~ 278 (476)
T 3lad_A 223 ------------------------VAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR 278 (476)
T ss_dssp ------------------------HHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred ------------------------HHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence 00111234556678888775 7777643 2 566655 56999999999999
Q ss_pred CCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCCC
Q 010421 370 DGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+|+..++. ..-.++..++++.+.+...+ .++.||||++|.... +...+.+..|++.+|..+.|+.
T Consensus 279 ~p~~~~l~---~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (476)
T 3lad_A 279 RPVTTDLL---AADSGVTLDERGFIYVDDYC-ATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 344 (476)
T ss_dssp EECCTTCC---SSCCSCCBCTTSCBCCCTTS-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCCC---ccccCccccCCCCEeeCCCc-ccCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 99875321 11111222334445444443 367899999998764 3446789999999999987653
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=222.69 Aligned_cols=307 Identities=18% Similarity=0.188 Sum_probs=184.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC--------CcCccccCC-CcCceeccCCCC----ccccCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD--------SIGGIWKSC-SYNSTKLQSHRS----DYEFTDFPWPN 67 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~--------~~GG~w~~~-~~~~~~~~~~~~----~~~~~~~~~~~ 67 (511)
..+||+|||||++|+++|..| .|.+|+|+|+++ .+||+|... ..|...+..+.. ...+..+.++.
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~ 110 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV 110 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence 357999999999999999999 899999999954 789988651 122211111000 00111222221
Q ss_pred CCCCCCCChHHHHHHHHHHHHh-----------cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC
Q 010421 68 RDDPGFPSYTEILDYLESYAKH-----------FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN 136 (511)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (511)
. .........+.++.+.+.++ .++ .+. ..++..++. . ++.+...+
T Consensus 111 ~-~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV--~~i-~g~a~~~d~------------------~--~v~v~~~~ 166 (519)
T 3qfa_A 111 E-ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV--VYE-NAYGQFIGP------------------H--RIKATNNK 166 (519)
T ss_dssp C-SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEE-CSEEEEEET------------------T--EEEEECTT
T ss_pred C-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEeeC------------------C--EEEEEcCC
Confidence 1 12234556666665554432 233 222 233433332 2 34444322
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHH
Q 010421 137 SNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216 (511)
Q Consensus 137 ~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l 216 (511)
++..++.||+|||||| +.|..|.+| |.+. .++++.++..+ ....++|+|||+|.+|+|+|..|
T Consensus 167 -g~~~~i~~d~lViATG---s~p~~p~i~---G~~~---~~~t~~~~~~l-------~~~~~~vvVIGgG~ig~E~A~~l 229 (519)
T 3qfa_A 167 -GKEKIYSAERFLIATG---ERPRYLGIP---GDKE---YCISSDDLFSL-------PYCPGKTLVVGASYVALECAGFL 229 (519)
T ss_dssp -CCCCEEEEEEEEECCC---EEECCCCCT---THHH---HCBCHHHHTTC-------SSCCCSEEEECCSHHHHHHHHHH
T ss_pred -CCEEEEECCEEEEECC---CCcCCCCCC---CccC---ceEcHHHHhhh-------hhcCCeEEEECCcHHHHHHHHHH
Confidence 3334799999999999 468888888 6443 24455554432 24567899999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhcc
Q 010421 217 AESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWK 296 (511)
Q Consensus 217 ~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
++.+.+ ||++.|+. ++|..+ . .. .
T Consensus 230 ~~~G~~-----Vtlv~~~~--~l~~~d-------~----~~----------------------------~---------- 253 (519)
T 3qfa_A 230 AGIGLD-----VTVMVRSI--LLRGFD-------Q----DM----------------------------A---------- 253 (519)
T ss_dssp HHTTCC-----EEEEESSC--SSTTSC-------H----HH----------------------------H----------
T ss_pred HHcCCe-----EEEEeccc--ccccCC-------H----HH----------------------------H----------
Confidence 998765 99999852 333322 0 00 0
Q ss_pred CCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeE---EeC---CcE--E--EcCCc---eeeccE
Q 010421 297 LPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWW---FWK---GGL--E--FEDNT---KLEADV 362 (511)
Q Consensus 297 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~---~~~---~~v--~--~~dG~---~~~~D~ 362 (511)
+.+.+.+++.+|+++.+. +.+ +.. +++ . ..+|. ++++|.
T Consensus 254 ---------------------------~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~ 306 (519)
T 3qfa_A 254 ---------------------------NKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNT 306 (519)
T ss_dssp ---------------------------HHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESE
T ss_pred ---------------------------HHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCE
Confidence 011123445566666653 333 332 222 2 24553 468999
Q ss_pred EEEecCCCCcccccccCCCcccccccC-CCCcccceeeecCCCCCceEEEeecc-c-chhhhhHHHHHHHHHHHhcCC
Q 010421 363 VILCTGYDGKKKLKAFLPEPFQSLLEH-PSGLLPLYRGTIHPLIPNMAFVGYIE-S-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 363 VI~aTG~~~~~~~~~~~~~~~~~~~~~-~~~~~~ly~~~~~~~~pnl~~iG~~~-~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
||+|||++|+..++. ..-.++..+ ..+.+.+...+ .++.||||++|... . +...+.+..|++.+|..+.|.
T Consensus 307 vi~a~G~~p~~~~l~---l~~~gl~~~~~~G~I~Vd~~~-~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~ 380 (519)
T 3qfa_A 307 VMLAIGRDACTRKIG---LETVGVKINEKTGKIPVTDEE-QTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 380 (519)
T ss_dssp EEECSCEEESCSSSC---STTTTCCCCTTTCCBCCCTTS-BCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSC
T ss_pred EEEecCCcccCCCCC---hhhcCcEEcCCCCeEeeCCCC-ccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 999999999876422 111112122 23445554443 36789999999876 3 345678999999999988764
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-25 Score=226.87 Aligned_cols=296 Identities=16% Similarity=0.213 Sum_probs=183.9
Q ss_pred CeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+||+|||||++|+++|..| . +.+|+|+|+++..++... .+ +. ... ......+++.
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~--~~---~~~---------~~~~~~~~l~ 95 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-------GL--PY---VIS---------GAIASTEKLI 95 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-------GH--HH---HHT---------TSSSCGGGGB
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-------Cc--ch---hhc---------CCcCCHHHhh
Confidence 6999999999999999999 3 899999999876642211 00 00 000 0001111111
Q ss_pred -HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 81 -DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 81 -~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+.+.+.+++++ .++++++|+.++.. .+ .|.+.+..+++..++.||+||+|||. .|
T Consensus 96 ~~~~~~~~~~~gv--~~~~~~~v~~i~~~----------------~~--~v~v~~~~~g~~~~~~~d~lviAtG~---~p 152 (480)
T 3cgb_A 96 ARNVKTFRDKYGI--DAKVRHEVTKVDTE----------------KK--IVYAEHTKTKDVFEFSYDRLLIATGV---RP 152 (480)
T ss_dssp SSCHHHHHHTTCC--EEESSEEEEEEETT----------------TT--EEEEEETTTCCEEEEECSEEEECCCE---EE
T ss_pred hcCHHHHHhhcCC--EEEeCCEEEEEECC----------------CC--EEEEEEcCCCceEEEEcCEEEECCCC---cc
Confidence 123344466677 78888999999862 22 35555422233346899999999994 57
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhh-hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEA-ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
..|++| |.+. . .+++...+.+..... ......+++|+|||+|.+|+|+|..+++.+.+ |+++.|.+. +
T Consensus 153 ~~p~i~---G~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~-----Vtlv~~~~~-~ 221 (480)
T 3cgb_A 153 VMPEWE---GRDL-Q-GVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKK-----VRMIERNDH-I 221 (480)
T ss_dssp CCCCCB---TTTS-B-TEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCE-----EEEECCGGG-T
T ss_pred cCCCCC---CccC-C-CEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCe-----EEEEEeCCc-h
Confidence 888888 6542 1 255544333211000 00012689999999999999999999988754 999999764 2
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
++... ..+ .
T Consensus 222 l~~~~-----------~~~----------------------------~-------------------------------- 230 (480)
T 3cgb_A 222 GTIYD-----------GDM----------------------------A-------------------------------- 230 (480)
T ss_dssp TSSSC-----------HHH----------------------------H--------------------------------
T ss_pred hhcCC-----------HHH----------------------------H--------------------------------
Confidence 22111 000 0
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCCc-E--EEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcc
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG-L--EFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLL 394 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~-v--~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
+.+.+.+++.+|+++.+. +.+++.++ + +..++.++++|.||+|||++++..+++..+.. .++++.+
T Consensus 231 -----~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~~l~~~g~~-----~~~~G~I 300 (480)
T 3cgb_A 231 -----EYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNIR-----TNHKGAI 300 (480)
T ss_dssp -----HHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCGGGTTSCCC-----BCTTSCB
T ss_pred -----HHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChHHHHhCCcc-----cCCCCCE
Confidence 011123444556776654 66776543 3 23355689999999999999987654322211 1233444
Q ss_pred cceeeecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCC
Q 010421 395 PLYRGTIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 395 ~ly~~~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 437 (511)
.+...+ .++.||+|++|..... .....+..|++.+|..+.|+
T Consensus 301 ~Vd~~~-~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 353 (480)
T 3cgb_A 301 EVNAYM-QTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDK 353 (480)
T ss_dssp CCCTTS-BCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred EECCCc-cCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCC
Confidence 444433 3568999999976531 23578999999999999875
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-25 Score=223.28 Aligned_cols=297 Identities=13% Similarity=0.044 Sum_probs=188.0
Q ss_pred CeEEEECCCHHHHHHHHhc-c----CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL-R----HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~----g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
++|+|||||++|+++|..| . +.+|+|+|+++.++..... + + . .......+++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~---~-----------------~--~-~~~~~~~~~~ 58 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPAL---P-----------------H--V-AIGVRDVDEL 58 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSS---C-----------------C--C-CSSCCCCCCE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccch---h-----------------h--c-ccCCcCHHHH
Confidence 5899999999999999999 4 7899999998755321110 0 0 0 0111222333
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
..++...++++++ .+..+ +|+.++.. . ..|++.++. +...++.||+||+|||. .|
T Consensus 59 ~~~~~~~~~~~gv--~~~~~-~v~~i~~~----------------~--~~V~~~~g~-~~~~~~~~d~lViAtG~---~~ 113 (409)
T 3h8l_A 59 KVDLSEALPEKGI--QFQEG-TVEKIDAK----------------S--SMVYYTKPD-GSMAEEEYDYVIVGIGA---HL 113 (409)
T ss_dssp EEEHHHHTGGGTC--EEEEC-EEEEEETT----------------T--TEEEEECTT-SCEEEEECSEEEECCCC---EE
T ss_pred HHHHHHHHhhCCe--EEEEe-eEEEEeCC----------------C--CEEEEccCC-cccceeeCCEEEECCCC---Cc
Confidence 4556666677787 66665 89988862 1 157777654 23346899999999994 67
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCC-------------------C------CHHHHHH
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFK-------------------K------SAIDLAK 214 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G-------------------~------sg~d~a~ 214 (511)
+.|.+| |.+. ...+...+..............++++|||+| . .++|+|.
T Consensus 114 ~~~~ip---G~~~---~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~ 187 (409)
T 3h8l_A 114 ATELVK---GWDK---YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSL 187 (409)
T ss_dssp CGGGSB---THHH---HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHH
T ss_pred CccCCC---Chhh---cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHH
Confidence 777777 6553 2333333332110000000112567799999 2 2788887
Q ss_pred HHHHhcCCC---CCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHH
Q 010421 215 ECAESNQGP---EGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIES 291 (511)
Q Consensus 215 ~l~~~~~~~---~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (511)
.++...... ...+|+++.+.+ ++|... ..+
T Consensus 188 ~~~~~l~~~g~~~~~~v~~~~~~~--~l~~~~-----------~~~---------------------------------- 220 (409)
T 3h8l_A 188 MLHGYFKKKGMLDKVHVTVFSPGE--YLSDLS-----------PNS---------------------------------- 220 (409)
T ss_dssp HHHHHHHTTTCTTTEEEEEECSSS--SSTTBC-----------HHH----------------------------------
T ss_pred HHHHHHHHcCCCCCeEEEEEeCCc--cccccC-----------HHH----------------------------------
Confidence 665431110 012589998876 333321 000
Q ss_pred HHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCCC
Q 010421 292 YLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGYD 370 (511)
Q Consensus 292 ~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~~ 370 (511)
.+.+.+.+++.+|+++.+. |.++++++|+++||+++++|.||+|||++
T Consensus 221 -------------------------------~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~ 269 (409)
T 3h8l_A 221 -------------------------------RKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYT 269 (409)
T ss_dssp -------------------------------HHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEE
T ss_pred -------------------------------HHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCC
Confidence 0011133455578888865 89999999999999999999999999999
Q ss_pred CcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc---chhhhhHHHHHHHHHHHhcCCC
Q 010421 371 GKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES---VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~---~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
++..+.+ .+. ++ .+.++.+.+...+..+++||+|++|.... +.....++.||+.+|+.+.+.+
T Consensus 270 ~~~~l~~-~~~---~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 270 GNPALKN-STP---DL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp CCHHHHT-SCG---GG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHh-ccc---cC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 8743221 111 11 23445566666666678999999998764 3345789999999999886543
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=222.67 Aligned_cols=305 Identities=18% Similarity=0.202 Sum_probs=184.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-------C--CcCccccCC-CcCceeccCCCCc----cccCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-------D--SIGGIWKSC-SYNSTKLQSHRSD----YEFTDFPWP 66 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-------~--~~GG~w~~~-~~~~~~~~~~~~~----~~~~~~~~~ 66 (511)
+.+||+|||||++|+++|..| .|++|+|+|+. . .+||+|... ..|...+..+... .....+.++
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~ 87 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN 87 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 358999999999999999999 89999999942 1 389988651 1221111000000 001111111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc-----------CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC
Q 010421 67 NRDDPGFPSYTEILDYLESYAKHF-----------DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH 135 (511)
Q Consensus 67 ~~~~~~~~~~~~~~~yl~~~~~~~-----------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (511)
.. ........++.++...+.+.+ ++ .+ +..++..++ ... +.+...
T Consensus 88 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~a~~~~------------------~~~--v~v~~~ 143 (483)
T 3dgh_A 88 VD-DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKV--EY-INGLGSFVD------------------SHT--LLAKLK 143 (483)
T ss_dssp CC-CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ECSEEEEEE------------------TTE--EEEECT
T ss_pred cC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EE-EEeEEEEcc------------------CCE--EEEEeC
Confidence 11 122345566666655554432 22 12 222333222 222 333332
Q ss_pred CCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHH
Q 010421 136 NSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKE 215 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~ 215 (511)
+ +. .++.||+||+||| +.|..|.+| |.+.+ .+++.++..+ ...+++|+|||+|.+|+|+|..
T Consensus 144 ~-g~-~~~~~d~lviATG---s~p~~p~i~---G~~~~---~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~ 205 (483)
T 3dgh_A 144 S-GE-RTITAQTFVIAVG---GRPRYPDIP---GAVEY---GITSDDLFSL-------DREPGKTLVVGAGYIGLECAGF 205 (483)
T ss_dssp T-CC-EEEEEEEEEECCC---EEECCCSST---THHHH---CBCHHHHTTC-------SSCCCEEEEECCSHHHHHHHHH
T ss_pred C-Ce-EEEEcCEEEEeCC---CCcCCCCCC---Ccccc---cCcHHHHhhh-------hhcCCcEEEECCCHHHHHHHHH
Confidence 2 22 3789999999999 468888888 65432 3455554432 2357899999999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhc
Q 010421 216 CAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLW 295 (511)
Q Consensus 216 l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (511)
+++.+.+ |+++.|.. ++|..+ . ..
T Consensus 206 l~~~g~~-----Vtlv~~~~--~l~~~d-------~----~~-------------------------------------- 229 (483)
T 3dgh_A 206 LKGLGYE-----PTVMVRSI--VLRGFD-------Q----QM-------------------------------------- 229 (483)
T ss_dssp HHHTTCE-----EEEEESSC--SSTTSC-------H----HH--------------------------------------
T ss_pred HHHcCCE-----EEEEeCCC--CCcccC-------H----HH--------------------------------------
Confidence 9998764 99998843 333221 0 00
Q ss_pred cCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc---EEEcCCc-----eeeccEEE
Q 010421 296 KLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG---LEFEDNT-----KLEADVVI 364 (511)
Q Consensus 296 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~---v~~~dG~-----~~~~D~VI 364 (511)
.+.+.+.+++.+|+++.+. +.+++. ++ |++.++. ++++|.||
T Consensus 230 ---------------------------~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi 282 (483)
T 3dgh_A 230 ---------------------------AELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVL 282 (483)
T ss_dssp ---------------------------HHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEE
T ss_pred ---------------------------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEE
Confidence 0011123445567777764 666653 33 6676664 68999999
Q ss_pred EecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecc-c-chhhhhHHHHHHHHHHHhcCC
Q 010421 365 LCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIE-S-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 365 ~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~-~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+|||++|+..++.+ .-.++..++ +.+.+...+ .++.||+|++|... . +...+.+..|++.+|..+.|.
T Consensus 283 ~a~G~~p~~~~l~l---~~~gl~~~~-G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (483)
T 3dgh_A 283 WAIGRKGLVDDLNL---PNAGVTVQK-DKIPVDSQE-ATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGG 352 (483)
T ss_dssp ECSCEEECCGGGTG---GGTTCCCBT-TBBCCCTTC-BCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred ECcccccCcCcCCc---hhcCccccC-CEEEECcCC-ccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 99999998765321 111111123 445554443 46789999999875 2 445678999999999998765
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-25 Score=225.49 Aligned_cols=167 Identities=21% Similarity=0.275 Sum_probs=116.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||++|+++|..| .|++|+|||+.+.+||.|.+ ..| .+....++.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~-gip------------------------~~~~~~~~~ 175 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVY-GIP------------------------GFKLEKSVV 175 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHH-TSC------------------------TTTSCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeee-cCC------------------------CccCCHHHH
Confidence 357999999999999999999 89999999999999998865 221 111224667
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
++..++++++++ .+++++.|. . .|++.+. .+.||+||+|||.. .|+
T Consensus 176 ~~~~~~l~~~gv--~~~~~~~v~---~---------------------~v~~~~~------~~~~d~vvlAtG~~--~~~ 221 (456)
T 2vdc_G 176 ERRVKLLADAGV--IYHPNFEVG---R---------------------DASLPEL------RRKHVAVLVATGVY--KAR 221 (456)
T ss_dssp HHHHHHHHHTTC--EEETTCCBT---T---------------------TBCHHHH------HSSCSEEEECCCCC--EEC
T ss_pred HHHHHHHHHCCc--EEEeCCEec---c---------------------EEEhhHh------HhhCCEEEEecCCC--CCC
Confidence 777778888887 677776542 0 1222222 34699999999964 466
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchh---hh--------hhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEE
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKE---AA--------SQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCT 229 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~---~~--------~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vt 229 (511)
.+.+| |.+ ..| ++++.+|...... .. .....+|+|+|||+|.+|+|+|..+.+.+. ++|+
T Consensus 222 ~~~ip---G~~-~~g-v~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga----~~Vt 292 (456)
T 2vdc_G 222 DIKAP---GSG-LGN-IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGA----TSVK 292 (456)
T ss_dssp CTTCS---CCT-TTT-EEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTC----SEEE
T ss_pred CCCCC---CCc-CCC-cEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCC----CEEE
Confidence 77777 644 222 4444333110000 00 012578999999999999999999988864 3599
Q ss_pred EEEecCce
Q 010421 230 MIVRTTHW 237 (511)
Q Consensus 230 l~~R~~~~ 237 (511)
++.|++..
T Consensus 293 iv~r~~~~ 300 (456)
T 2vdc_G 293 CLYRRDRK 300 (456)
T ss_dssp EECSSCST
T ss_pred EEEeCCcc
Confidence 99998764
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-24 Score=225.73 Aligned_cols=311 Identities=18% Similarity=0.183 Sum_probs=181.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-C-------CcCccccC-CCcCceeccCCCC----ccccCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-D-------SIGGIWKS-CSYNSTKLQSHRS----DYEFTDFPWPN 67 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~-------~~GG~w~~-~~~~~~~~~~~~~----~~~~~~~~~~~ 67 (511)
..+||+|||||++|++||..| .|++|+|||+. + .+||+|.. ..+|...+..... ......+.+..
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~ 185 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSL 185 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCccc
Confidence 357999999999999999999 89999999973 2 37777643 1222221110000 00011111110
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCC-------CceE-eeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCc
Q 010421 68 RDDPGFPSYTEILDYLESYAKHFDVF-------KCVR-FNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS 139 (511)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~~~~~~-------~~i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (511)
..........++.+|++.+++++... ..+. ....+..++ .|.+.+.+.+ ++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~--------------------~~~v~v~~~~-g~ 244 (598)
T 2x8g_A 186 DRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLIS--------------------PHEVQITDKN-QK 244 (598)
T ss_dssp CGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEE--------------------TTEEEEECTT-CC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcC--------------------CCEEEEEeCC-CC
Confidence 00012345677777777665542110 0111 112222222 2346655432 33
Q ss_pred eeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHh
Q 010421 140 IQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAES 219 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~ 219 (511)
..++.||+||+|||+ .|+.|++| |.+.+ .+++.++... ...+++|+|||+|.+|+|+|..|++.
T Consensus 245 ~~~~~~d~lviAtGs---~p~~p~i~---G~~~~---~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~l~~~ 308 (598)
T 2x8g_A 245 VSTITGNKIILATGE---RPKYPEIP---GAVEY---GITSDDLFSL-------PYFPGKTLVIGASYVALECAGFLASL 308 (598)
T ss_dssp EEEEEEEEEEECCCE---EECCCSST---THHHH---CEEHHHHTTC-------SSCCCSEEEECCSHHHHHHHHHHHHT
T ss_pred eEEEEeCEEEEeCCC---CCCCCCCC---Ccccc---eEcHHHHhhC-------ccCCCEEEEECCCHHHHHHHHHHHHc
Confidence 346899999999994 68888888 65432 3455444332 24578999999999999999999998
Q ss_pred cCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCc
Q 010421 220 NQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPL 299 (511)
Q Consensus 220 ~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (511)
+.+ ||++.|+ .++|..+ . .. ...
T Consensus 309 g~~-----Vtlv~~~--~~l~~~d-------~----~~----------------------------~~~----------- 331 (598)
T 2x8g_A 309 GGD-----VTVMVRS--ILLRGFD-------Q----QM----------------------------AEK----------- 331 (598)
T ss_dssp TCC-----EEEEESS--CSSTTSC-------H----HH----------------------------HHH-----------
T ss_pred CCE-----EEEEECC--cCcCcCC-------H----HH----------------------------HHH-----------
Confidence 765 9999987 2333321 0 00 000
Q ss_pred ccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEe--------C---CcEE----EcCCceee--cc
Q 010421 300 LKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFW--------K---GGLE----FEDNTKLE--AD 361 (511)
Q Consensus 300 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--------~---~~v~----~~dG~~~~--~D 361 (511)
+.+.+++.+|+++.+. +.+++ + +++. +.+|++++ +|
T Consensus 332 --------------------------~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D 385 (598)
T 2x8g_A 332 --------------------------VGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFE 385 (598)
T ss_dssp --------------------------HHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEES
T ss_pred --------------------------HHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCC
Confidence 0112333445555542 33331 1 2232 35787654 99
Q ss_pred EEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecc-c-chhhhhHHHHHHHHHHHhcCC
Q 010421 362 VVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIE-S-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 362 ~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~-~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
.||+|||++++..++. ....++..++.+.+.+...+ .++.|++|++|... . +...+.+..|++.+|..+.+.
T Consensus 386 ~vi~a~G~~p~~~~l~---~~~~gl~~~~~G~i~vd~~~-~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 459 (598)
T 2x8g_A 386 TVIFAVGREPQLSKVL---CETVGVKLDKNGRVVCTDDE-QTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAG 459 (598)
T ss_dssp EEEECSCEEECGGGTB---CGGGCCCBCTTSCBCCCTTS-BCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCccccCccC---chhcCceECCCCcEEeCCCC-cCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence 9999999999876421 01111112334445554443 46789999999873 3 335678999999999988653
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-25 Score=237.06 Aligned_cols=268 Identities=20% Similarity=0.189 Sum_probs=188.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
..+||+|||||++|+++|..| .|++|+|||+++.+||.|... .+ +.+....++
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~------------------------p~~~~~~~~ 445 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESAL------------------------PGLSAWGRV 445 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTS------------------------TTCGGGGHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCC------------------------CchhHHHHH
Confidence 357999999999999999999 899999999999999987651 11 222345678
Q ss_pred HHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 80 LDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 80 ~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
.+|+...++++ ++ .++++++|+ ..+. .++.+|+||+|||... .
T Consensus 446 ~~~~~~~~~~~~gv--~~~~~~~v~----------------------------~~~~-----~~~~~d~lvlAtG~~~-~ 489 (690)
T 3k30_A 446 KEYREAVLAELPNV--EIYRESPMT----------------------------GDDI-----VEFGFEHVITATGATW-R 489 (690)
T ss_dssp HHHHHHHHHTCTTE--EEESSCCCC----------------------------HHHH-----HHTTCCEEEECCCEEE-C
T ss_pred HHHHHHHHHHcCCC--EEEECCeec----------------------------HHHH-----hhcCCCEEEEcCCCcc-c
Confidence 88888888876 55 455443321 1111 1567999999999752 2
Q ss_pred ------CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEEC--CCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 159 ------PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVG--FKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 159 ------p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG--~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
|..|.+| |.+. ..++++.++.. .....+++|+||| +|.+|+|+|..|++.+.+ |++
T Consensus 490 ~~~~~~~~~~~i~---G~~~--~~v~~~~~~l~------~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~-----Vtl 553 (690)
T 3k30_A 490 TDGVARFHTTALP---IAEG--MQVLGPDDLFA------GRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYE-----VSI 553 (690)
T ss_dssp SSCCSSSCSSCCC---BCTT--SEEECHHHHHT------TCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCE-----EEE
T ss_pred cccccccCCCCCC---CCCC--CcEEcHHHHhC------CCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCe-----eEE
Confidence 5567777 5542 35677666543 2345788999999 999999999999998754 999
Q ss_pred EEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcc
Q 010421 231 IVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPF 310 (511)
Q Consensus 231 ~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 310 (511)
+.+.+.. .+... + .
T Consensus 554 v~~~~~l-~~~~~----~------~------------------------------------------------------- 567 (690)
T 3k30_A 554 VTPGAQV-SSWTN----N------T------------------------------------------------------- 567 (690)
T ss_dssp EESSSST-TGGGG----G------G-------------------------------------------------------
T ss_pred Eeccccc-ccccc----c------c-------------------------------------------------------
Confidence 9987642 11100 0 0
Q ss_pred ccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEc-----CCceeeccEEEEecCCCCcccccccCCCccc
Q 010421 311 EEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFE-----DNTKLEADVVILCTGYDGKKKLKAFLPEPFQ 384 (511)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~-----dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~ 384 (511)
.....+.+.+++.+|+++.+. |.+++++++.+. +++++++|.||+|||++++..+...+..
T Consensus 568 ----------~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~--- 634 (690)
T 3k30_A 568 ----------FEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPREELYLDLVA--- 634 (690)
T ss_dssp ----------TCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHH---
T ss_pred ----------hhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhh---
Confidence 000112244566678888875 888988886654 4556999999999999998764321100
Q ss_pred ccccCCCCcccceeeecCCCCCceEEEeecccchhhhhHHHHHHHHHHHhcCCCC
Q 010421 385 SLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLIDDKFK 439 (511)
Q Consensus 385 ~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~ 439 (511)
. .. .++.||+|++|....+..+..+..|++.+|..+.+.+.
T Consensus 635 ------~----~~----~t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~l~ 675 (690)
T 3k30_A 635 ------R----RD----AGEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVLP 675 (690)
T ss_dssp ------H----HH----HTSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCCCC
T ss_pred ------h----hc----ccCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhhcc
Confidence 0 00 46789999999887766677799999999999987643
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-24 Score=217.61 Aligned_cols=171 Identities=20% Similarity=0.216 Sum_probs=114.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc-c--------CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL-R--------HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGF 73 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l-~--------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (511)
+.++|+|||||++|+++|..| . +.+|+|||+.+.+||.|.+... +.+
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~------------------------p~~ 57 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVA------------------------PDH 57 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSC------------------------TTC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccC------------------------CCC
Confidence 357999999999999999999 6 8999999999889998865111 223
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 74 PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+...++..++..+++++++ .++.+.+| . . .|++.++ .+.||+||+|||
T Consensus 58 ~~~~~~~~~~~~~~~~~~v--~~~~~v~v---~------------------~---~v~~~~~------~~~~d~lViAtG 105 (456)
T 1lqt_A 58 PKIKSISKQFEKTAEDPRF--RFFGNVVV---G------------------E---HVQPGEL------SERYDAVIYAVG 105 (456)
T ss_dssp TGGGGGHHHHHHHHTSTTE--EEEESCCB---T------------------T---TBCHHHH------HHHSSEEEECCC
T ss_pred CCHHHHHHHHHHHHhcCCC--EEEeeEEE---C------------------C---EEEECCC------eEeCCEEEEeeC
Confidence 3455677888888877665 44444221 1 0 1333332 468999999999
Q ss_pred ccCCCCCCCCCCCCCCCCcccceEEeccccCc----c-chhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC-------
Q 010421 154 KYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCK----L-DKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ------- 221 (511)
Q Consensus 154 ~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~----~-~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~------- 221 (511)
+. .|+.|.+| |.+ +.| ++++.++.. . +.......+.+++|+|||+|.+|+|+|..|++...
T Consensus 106 ~~--~~~~~~ip---G~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi 178 (456)
T 1lqt_A 106 AQ--SDRMLNIP---GED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDI 178 (456)
T ss_dssp CC--EECCCCCT---TTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCC
T ss_pred CC--CCCCCCCC---CCC-CCC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCc
Confidence 63 36677788 655 344 666655410 0 00000112478999999999999999999987410
Q ss_pred ---------CCCCCcEEEEEecCc
Q 010421 222 ---------GPEGQPCTMIVRTTH 236 (511)
Q Consensus 222 ---------~~~~~~Vtl~~R~~~ 236 (511)
....++|+++.|++.
T Consensus 179 ~~~~~~~l~~~g~~~V~lv~r~~~ 202 (456)
T 1lqt_A 179 ADHALESLRPRGIQEVVIVGRRGP 202 (456)
T ss_dssp CHHHHHHHTTCCCCEEEEECSSCG
T ss_pred cHHHHHHHHHCCCcEEEEEecCCh
Confidence 000246999999875
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-24 Score=221.59 Aligned_cols=307 Identities=13% Similarity=0.137 Sum_probs=181.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
+++|||||||++|+.+|+.| .+++|+|+|+++.. .|..+ +++.. .......++..
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~-------~~~Pl-------L~~va---------~G~l~~~~i~~ 98 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF-------LFTPL-------LPSAP---------VGTVDEKSIIE 98 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE-------ECGGG-------GGGTT---------TTSSCGGGGEE
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc-------ccccc-------hhHHh---------hccccHHHhhh
Confidence 46899999999999999999 78999999998643 11100 00000 00111111111
Q ss_pred HHHHHHHhcCCCCceE-eeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC---------------CCCceeEEEe
Q 010421 82 YLESYAKHFDVFKCVR-FNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH---------------NSNSIQRYGF 145 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~~~~ 145 (511)
.+..+..... ..+. ...+|++|+.. .. +|++++. ..+...++.|
T Consensus 99 p~~~~~~~~~--~~v~~~~~~v~~ID~~----------------~k--~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~Y 158 (502)
T 4g6h_A 99 PIVNFALKKK--GNVTYYEAEATSINPD----------------RN--TVTIKSLSAVSQLYQPENHLGLHQAEPAEIKY 158 (502)
T ss_dssp EHHHHHTTCS--SCEEEEEEEEEEEEGG----------------GT--EEEEEEEEEEEECSSSCCCCCCCTTCCEEEEC
T ss_pred hHHHHHHhhc--CCeEEEEEEEEEEEhh----------------hC--EEEEeecccceeecccccccccccCCceEEeC
Confidence 1222221111 1233 35688898873 11 3444331 0122347999
Q ss_pred CEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccch---------hhh-------hhccCCCcEEEECCCCCH
Q 010421 146 EFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDK---------EAA-------SQLLKDKKVAVVGFKKSA 209 (511)
Q Consensus 146 d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~---------~~~-------~~~~~~k~V~VvG~G~sg 209 (511)
|+|||||| +.|+.+++| |.+... +......+... +.. +......+++|||+|.+|
T Consensus 159 D~LViAtG---s~~~~~~ip---G~~e~a---~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tG 229 (502)
T 4g6h_A 159 DYLISAVG---AEPNTFGIP---GVTDYG---HFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTG 229 (502)
T ss_dssp SEEEECCC---CEECCTTCT---THHHHC---EECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHH
T ss_pred CEEEEcCC---cccccCCcc---Cccccc---CCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcch
Confidence 99999999 567888888 654321 11111100000 000 011123479999999999
Q ss_pred HHHHHHHHHhcCC---------CCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhh
Q 010421 210 IDLAKECAESNQG---------PEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSP 280 (511)
Q Consensus 210 ~d~a~~l~~~~~~---------~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 280 (511)
+|+|.+|++.... ....+|+++.+.+. ++|..+ .+..
T Consensus 230 vE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~-il~~~~-----------~~~~---------------------- 275 (502)
T 4g6h_A 230 VEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPI-VLNMFE-----------KKLS---------------------- 275 (502)
T ss_dssp HHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSS-SSTTSC-----------HHHH----------------------
T ss_pred hhhHHHHHHHHHHHHHhhcccccccceeEEeccccc-cccCCC-----------HHHH----------------------
Confidence 9999998864310 00124899988876 444432 0000
Q ss_pred hHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEE----cCC
Q 010421 281 LRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEF----EDN 355 (511)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~----~dG 355 (511)
+...+.+++.+|+++.+. |.+++++++.+ +||
T Consensus 276 -------------------------------------------~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg 312 (502)
T 4g6h_A 276 -------------------------------------------SYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDG 312 (502)
T ss_dssp -------------------------------------------HHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTS
T ss_pred -------------------------------------------HHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCc
Confidence 011134556678888876 88899888655 355
Q ss_pred c----eeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc---chhhhhHHHHHH
Q 010421 356 T----KLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES---VSNLHTAELRSI 428 (511)
Q Consensus 356 ~----~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~---~~~~~~~e~qa~ 428 (511)
+ ++++|.||||||.+++....+ +... .+...+..+.+.+...+..+++||+|++|.+.. +.+.+.|..||+
T Consensus 313 ~~~~~~i~ad~viwa~Gv~~~~~~~~-l~~~-~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~ 390 (502)
T 4g6h_A 313 KITEETIPYGTLIWATGNKARPVITD-LFKK-IPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAE 390 (502)
T ss_dssp CEEEEEEECSEEEECCCEECCHHHHH-HHHH-SGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHH
T ss_pred ccceeeeccCEEEEccCCcCCHHHHh-HHHh-ccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHH
Confidence 4 589999999999998742211 1000 011123445566777677789999999997653 234578999999
Q ss_pred HHHHHhcCCCCCC
Q 010421 429 WLSRLIDDKFKLP 441 (511)
Q Consensus 429 ~~a~~l~g~~~lp 441 (511)
++|+.|.+..+.+
T Consensus 391 ~~A~ni~~~~~~~ 403 (502)
T 4g6h_A 391 YLAKNFDKMAQIP 403 (502)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccc
Confidence 9999997655433
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-24 Score=218.01 Aligned_cols=299 Identities=14% Similarity=0.156 Sum_probs=188.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc-c----CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL-R----HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPS 75 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l-~----g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (511)
|+..++|+|||||++|+++|..| . +++|+|+|+++... |..... .+ ......
T Consensus 1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~-------~~~~~~-------~~---------~~g~~~ 57 (437)
T 3sx6_A 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ-------FVPSNP-------WV---------GVGWKE 57 (437)
T ss_dssp CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE-------CGGGHH-------HH---------HHTSSC
T ss_pred CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc-------ccCCcc-------cc---------ccCccC
Confidence 66668999999999999999999 4 78999999987541 100000 00 012234
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+++..++..++++.++ .+. ..+|+.++.. +. +|++.++. ++.||+||+|||
T Consensus 58 ~~~~~~~l~~~~~~~gv--~~~-~~~v~~id~~----------------~~--~V~~~~g~-----~i~~d~lviAtG-- 109 (437)
T 3sx6_A 58 RDDIAFPIRHYVERKGI--HFI-AQSAEQIDAE----------------AQ--NITLADGN-----TVHYDYLMIATG-- 109 (437)
T ss_dssp HHHHEEECHHHHHTTTC--EEE-CSCEEEEETT----------------TT--EEEETTSC-----EEECSEEEECCC--
T ss_pred HHHHHHHHHHHHHHCCC--EEE-EeEEEEEEcC----------------CC--EEEECCCC-----EEECCEEEECCC--
Confidence 55666667777777777 554 5689998862 11 57666553 799999999999
Q ss_pred CCCCCCCCCCCCCCCCcccceEEeccccCccchhh--hhhccCCCcEEEECCCCCH------HHHHHHHHHh----cCCC
Q 010421 156 GDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEA--ASQLLKDKKVAVVGFKKSA------IDLAKECAES----NQGP 223 (511)
Q Consensus 156 ~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~--~~~~~~~k~V~VvG~G~sg------~d~a~~l~~~----~~~~ 223 (511)
..|+.|.+| |.+.+.+...+...+.+..... ......+++++|||+|.+| +|+|..++.. +...
T Consensus 110 -~~~~~~~ip---G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~ 185 (437)
T 3sx6_A 110 -PKLAFENVP---GSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRD 185 (437)
T ss_dssp -CEECGGGST---TCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGG
T ss_pred -CCcCcccCC---CCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcc
Confidence 467778888 6654434343333332211000 0011225678899996654 8988666543 2210
Q ss_pred CCCc-EEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccC
Q 010421 224 EGQP-CTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKY 302 (511)
Q Consensus 224 ~~~~-Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
..+ |+++.+.+.. .+... .+.+
T Consensus 186 -~~~~Vtlv~~~~~~-~~~~l-~~~~------------------------------------------------------ 208 (437)
T 3sx6_A 186 -KIPSFTFITSEPYI-GHLGI-QGVG------------------------------------------------------ 208 (437)
T ss_dssp -GCSCEEEEESSSST-TCTTT-TCCT------------------------------------------------------
T ss_pred -cCcEEEEEcCCccc-ccccc-Ccch------------------------------------------------------
Confidence 012 9999987641 11000 0000
Q ss_pred CCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcC---------CceeeccEEEEecCCCCc
Q 010421 303 GLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFED---------NTKLEADVVILCTGYDGK 372 (511)
Q Consensus 303 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~d---------G~~~~~D~VI~aTG~~~~ 372 (511)
...+.+.+.+++.+|+++.+. +.+++++++++++ ++++++|.||+|+|+.++
T Consensus 209 ------------------~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~ 270 (437)
T 3sx6_A 209 ------------------DSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGV 270 (437)
T ss_dssp ------------------THHHHHHHHHHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECC
T ss_pred ------------------HHHHHHHHHHHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCc
Confidence 000111234566678888775 8889988887765 667999999999999987
Q ss_pred ccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-------------hhhhhHHHHHHHHHHHhc
Q 010421 373 KKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-------------SNLHTAELRSIWLSRLID 435 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-------------~~~~~~e~qa~~~a~~l~ 435 (511)
..+.+. .++ .++.+.+.+...+..+++||+|++|..... .+...+..|++.+|..|.
T Consensus 271 ~~~~~~-----~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~ 340 (437)
T 3sx6_A 271 PAVAGV-----EGL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK 340 (437)
T ss_dssp HHHHTS-----TTT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcc-----ccc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 554321 112 245566777776666789999999976542 234578899998888764
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=213.01 Aligned_cols=307 Identities=17% Similarity=0.128 Sum_probs=178.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCC--------CCcCccccCC-CcCceeccCCCCccc-----cCCCCCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS--------DSIGGIWKSC-SYNSTKLQSHRSDYE-----FTDFPWPNR 68 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~--------~~~GG~w~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~ 68 (511)
|||+|||||++|+.+|.++ .|.+|+|+|+. ..+||++... +.|.-.+......+. ...+.+..
T Consensus 43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~- 121 (542)
T 4b1b_A 43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF- 121 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE-
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc-
Confidence 7999999999999999999 89999999974 3488876541 122111100000000 00010000
Q ss_pred CCCCCCChHHHHHHHHHHH-----------HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC-C
Q 010421 69 DDPGFPSYTEILDYLESYA-----------KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH-N 136 (511)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 136 (511)
...-.....+.++.+.+. ++.++ .+. .....-+. .. +|.+... .
T Consensus 122 -~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V--~~i-~G~a~f~~------------------~~--~v~V~~~~~ 177 (542)
T 4b1b_A 122 -DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKV--KYI-NGLAKLKD------------------KN--TVSYYLKGD 177 (542)
T ss_dssp -EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEE-CEEEEEEE------------------TT--EEEEEEC--
T ss_pred -CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-eeeEEEcC------------------CC--cceEeeccc
Confidence 000112334444433332 22333 222 22222111 11 3444322 1
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHH
Q 010421 137 SNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKEC 216 (511)
Q Consensus 137 ~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l 216 (511)
.+..+++.+|++||||| +.|.+|+.+ +.. ...++.|.+...+. ..+++++|||+|.+|+|+|..+
T Consensus 178 ~~~~~~i~a~~iiIATG---s~P~~P~~~---~~~--~~~~~ts~~~l~l~-------~lP~~lvIIGgG~IGlE~A~~~ 242 (542)
T 4b1b_A 178 LSKEETVTGKYILIATG---CRPHIPDDV---EGA--KELSITSDDIFSLK-------KDPGKTLVVGASYVALECSGFL 242 (542)
T ss_dssp CCCEEEEEEEEEEECCC---EEECCCSSS---BTH--HHHCBCHHHHTTCS-------SCCCSEEEECCSHHHHHHHHHH
T ss_pred CCceEEEeeeeEEeccC---CCCCCCCcc---cCC--CccccCchhhhccc-------cCCceEEEECCCHHHHHHHHHH
Confidence 23344799999999999 468887543 221 11245555554432 4578999999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhcc
Q 010421 217 AESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWK 296 (511)
Q Consensus 217 ~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
++.+.+ ||++.|+. ++|..+ . .. ..
T Consensus 243 ~~lG~~-----VTii~~~~--~L~~~D-------~----ei----------------------------~~--------- 267 (542)
T 4b1b_A 243 NSLGYD-----VTVAVRSI--VLRGFD-------Q----QC----------------------------AV--------- 267 (542)
T ss_dssp HHHTCC-----EEEEESSC--SSTTSC-------H----HH----------------------------HH---------
T ss_pred HhcCCe-----EEEecccc--cccccc-------h----hH----------------------------HH---------
Confidence 999876 99998753 345433 0 00 00
Q ss_pred CCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--EEEcCCceeeccEEEEecCCCC
Q 010421 297 LPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG--LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 297 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
.+.+.+++.+|+++.+. +.+++. ++ |.+.++.++++|.|++|||.+|
T Consensus 268 ----------------------------~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~P 319 (542)
T 4b1b_A 268 ----------------------------KVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKG 319 (542)
T ss_dssp ----------------------------HHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred ----------------------------HHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccC
Confidence 11123445556777664 555543 22 5677888899999999999999
Q ss_pred cccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc--hhhhhHHHHHHHHHHHhcCC
Q 010421 372 KKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV--SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~--~~~~~~e~qa~~~a~~l~g~ 437 (511)
+...+. .+..++..+..+....-.....++.||+|++|..... ...+.+..|++.++..+.|.
T Consensus 320 nt~~L~---le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~ 384 (542)
T 4b1b_A 320 DIDGLN---LESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKD 384 (542)
T ss_dssp SCGGGC---GGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CccccC---cccceeeecccCceEeccccccccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcC
Confidence 976432 1111111122222212222345778999999987643 34578999999999988663
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-23 Score=218.37 Aligned_cols=314 Identities=11% Similarity=0.070 Sum_probs=177.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCC-----CccccCCCCCCCC---
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHR-----SDYEFTDFPWPNR--- 68 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--- 68 (511)
|+..+||+|||||++|++||..| .+.+|+|||+++.++. .. ..++..+.... ..+.|.+++....
T Consensus 8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y--~r-~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (493)
T 1m6i_A 8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY--MR-PPLSKELWFSDDPNVTKTLRFKQWNGKERSIY 84 (493)
T ss_dssp CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCB--CS-GGGGTGGGCC--CTHHHHCEEECTTSCEEESB
T ss_pred CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC--CC-CCCCHHhhcCCccchhhccccccccccccccc
Confidence 34568999999999999999988 4889999999876641 11 00000000000 0011111110000
Q ss_pred --CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeC
Q 010421 69 --DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFE 146 (511)
Q Consensus 69 --~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 146 (511)
....+....++.+ ..+.++ .++++++|++++.. .++|++.++. ++.||
T Consensus 85 ~~~~~~~~~~~~l~~-----~~~~gv--~~~~g~~v~~id~~------------------~~~V~~~~g~-----~i~yd 134 (493)
T 1m6i_A 85 FQPPSFYVSAQDLPH-----IENGGV--AVLTGKKVVQLDVR------------------DNMVKLNDGS-----QITYE 134 (493)
T ss_dssp SSCGGGSBCTTTTTT-----STTCEE--EEEETCCEEEEEGG------------------GTEEEETTSC-----EEEEE
T ss_pred ccchHhhcchhhhhh-----hhcCCe--EEEcCCEEEEEECC------------------CCEEEECCCC-----EEECC
Confidence 0001111111100 122344 67778899999862 1367776554 78999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCC--cccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCC
Q 010421 147 FLVVCTGKYGDVPIIPAFPNNKGPE--VFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPE 224 (511)
Q Consensus 147 ~vVlAtG~~~~~p~~p~~~~~~g~~--~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 224 (511)
+||+|||+ .|+.|.++ +.. .+...+.......+... .......+++|+|||+|.+|+|+|..|++.+.+ .
T Consensus 135 ~lviATGs---~p~~~~~~---~~~~~~~~~~v~~~~~~~d~~~-l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~-~ 206 (493)
T 1m6i_A 135 KCLIATGG---TPRSLSAI---DRAGAEVKSRTTLFRKIGDFRS-LEKISREVKSITIIGGGFLGSELACALGRKARA-L 206 (493)
T ss_dssp EEEECCCE---EECCCHHH---HTSCHHHHHTEEECCSHHHHHH-HHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHH-H
T ss_pred EEEECCCC---CCCCCCCc---ccccccccCceEEEcCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhh-c
Confidence 99999995 56666554 211 11112222222211000 001223589999999999999999999874210 0
Q ss_pred CCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCC
Q 010421 225 GQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGL 304 (511)
Q Consensus 225 ~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (511)
+.+|+++.+.+..+ ++.. | ..+
T Consensus 207 g~~V~~v~~~~~~~-~~~l----~------~~~----------------------------------------------- 228 (493)
T 1m6i_A 207 GTEVIQLFPEKGNM-GKIL----P------EYL----------------------------------------------- 228 (493)
T ss_dssp TCEEEEECSSSSTT-TTTS----C------HHH-----------------------------------------------
T ss_pred CCEEEEEecCcccc-cccC----C------HHH-----------------------------------------------
Confidence 12488888765311 1110 0 000
Q ss_pred CCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC----cEEEcCCceeeccEEEEecCCCCcccccccC
Q 010421 305 KPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG----GLEFEDNTKLEADVVILCTGYDGKKKLKAFL 379 (511)
Q Consensus 305 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~ 379 (511)
.+.+.+.+++.+|+++.+. |.+++.+ .|+++||+++++|.||+|+|++++..+.+..
T Consensus 229 ------------------~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~ 290 (493)
T 1m6i_A 229 ------------------SNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTG 290 (493)
T ss_dssp ------------------HHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHH
T ss_pred ------------------HHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHc
Confidence 0011234556678888774 7777532 2778899999999999999999997654322
Q ss_pred CCcccccccCC-CCcccceeeecCCCCCceEEEeecccc----------hhhhhHHHHHHHHHHHhcCCC
Q 010421 380 PEPFQSLLEHP-SGLLPLYRGTIHPLIPNMAFVGYIESV----------SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 380 ~~~~~~~~~~~-~~~~~ly~~~~~~~~pnl~~iG~~~~~----------~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+.+ .++ .+.+.+..++.. .||+|++|.+... ..+..|..|++.+|+.+.|..
T Consensus 291 gl~-----~~~~~ggi~Vd~~l~t--~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~ 353 (493)
T 1m6i_A 291 GLE-----IDSDFGGFRVNAELQA--RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 353 (493)
T ss_dssp TCC-----BCTTTCSEECCTTCEE--ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCc-----cccCCCcEEECCCccc--CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence 211 111 233333333221 4999999976432 124579999999999998753
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-23 Score=227.77 Aligned_cols=277 Identities=17% Similarity=0.172 Sum_probs=179.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-CcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-SYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
.+||+|||||++|+++|..| .|++|+|||+++.+||.|... .+| .+.....+.
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~p------------------------g~~~~~~~~ 444 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALP------------------------GLGEWSYHR 444 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTST------------------------TCGGGHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCC------------------------ChHHHHHHH
Confidence 47999999999999999999 899999999999999988651 111 111234556
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCC---
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD--- 157 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~--- 157 (511)
+|++..++.+. ..+..++.+.. + ..|++.++. .+.||+||+|||....
T Consensus 445 ~~~~~~i~~~~-----~~~~~~v~i~~-----------------~--~~v~~~~~~-----~~~~d~vviAtG~~~~~~~ 495 (729)
T 1o94_A 445 DYRETQITKLL-----KKNKESQLALG-----------------Q--KPMTADDVL-----QYGADKVIIATGARWNTDG 495 (729)
T ss_dssp HHHHHHHHHHH-----HHSTTCEEECS-----------------C--CCCCHHHHH-----TSCCSEEEECCCEEECSSC
T ss_pred HHHHHHHHHhh-----cccCCceEEEe-----------------C--eEEehhhcc-----ccCCCEEEEcCCCCccccc
Confidence 67666555431 00111222221 0 013222221 5689999999997521
Q ss_pred --CCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEEC--CCCCHHHHHHHHHHhcCCCCCCcEEEEEe
Q 010421 158 --VPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVG--FKKSAIDLAKECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 158 --~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG--~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R 233 (511)
.|..|.+| |.+.+.+.++++.++.. .....+++|+||| +|.+|+|+|..|++.+.+ ||++.|
T Consensus 496 ~~~p~~~~ip---G~~~~~~~v~~~~~~l~------~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~-----Vtlv~~ 561 (729)
T 1o94_A 496 TNCLTHDPIP---GADASLPDQLTPEQVMD------GKKKIGKRVVILNADTYFMAPSLAEKLATAGHE-----VTIVSG 561 (729)
T ss_dssp CCTTTSSCCT---TCCTTSTTEECHHHHHH------CCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCE-----EEEEES
T ss_pred ccCccCCCCC---CccccCCCEEEHHHHhc------CCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCE-----EEEEec
Confidence 15667777 76655556777666533 1335689999999 999999999999998754 999999
Q ss_pred cCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccc
Q 010421 234 TTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEED 313 (511)
Q Consensus 234 ~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 313 (511)
++ +.+... .+.
T Consensus 562 ~~--l~~~~~---~~~---------------------------------------------------------------- 572 (729)
T 1o94_A 562 VH--LANYMH---FTL---------------------------------------------------------------- 572 (729)
T ss_dssp SC--TTHHHH---HTT----------------------------------------------------------------
T ss_pred cc--cccccc---ccc----------------------------------------------------------------
Confidence 76 322100 000
Q ss_pred cccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEc----CC-ce------------------eeccEEEEecCC
Q 010421 314 YASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFE----DN-TK------------------LEADVVILCTGY 369 (511)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~----dG-~~------------------~~~D~VI~aTG~ 369 (511)
....+.+.+++.+|+++.+. +.+++++++++. ++ ++ +++|.||+|+|+
T Consensus 573 --------~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~ 644 (729)
T 1o94_A 573 --------EYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 644 (729)
T ss_dssp --------CHHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE
T ss_pred --------cHHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCC
Confidence 00011133445567777764 777777665542 33 22 899999999999
Q ss_pred CCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccchhhhhHHHHHHHHHHHhcCCC
Q 010421 370 DGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+++..+.+-+ .. . +.. ...++.|++|++|....+..+..|..|++.+|..|.+.+
T Consensus 645 ~p~~~l~~~l----~~---~------vd~-~~~t~~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 645 HSECTLWNEL----KA---R------ESE-WAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp EECCHHHHHH----HH---T------GGG-TGGGTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCChHHHHHH----hh---h------ccc-ccccCCCCeEEEeCccchhhHHHHHHHHHHHHHHhhhhc
Confidence 9987653211 00 0 001 122567999999988766566779999999999887643
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-23 Score=221.80 Aligned_cols=289 Identities=19% Similarity=0.255 Sum_probs=171.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||++|+.+|..| .|++|+|+|+++.+||.|..... + +......++.+
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~------------------~-----~~~~~~~~~~~ 429 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ------------------I-----PGKEEFYETLR 429 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT------------------S-----TTCTTHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeecccc------------------C-----CCHHHHHHHHH
Confidence 57999999999999999999 88999999999999998754100 0 11112345566
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEE-EeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY-GFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~d~vVlAtG~~~~~p~ 160 (511)
++...++++++ .+++++.|.. . .+ .||+||+|||. .|+
T Consensus 430 ~~~~~~~~~gv--~~~~~~~v~~-------------------------------~-----~~~~~d~lviAtG~---~p~ 468 (671)
T 1ps9_A 430 YYRRMIEVTGV--TLKLNHTVTA-------------------------------D-----QLQAFDETILASGI---VPR 468 (671)
T ss_dssp HHHHHHHHHTC--EEEESCCCCS-------------------------------S-----SSCCSSEEEECCCE---EEC
T ss_pred HHHHHHHHcCC--EEEeCcEecH-------------------------------H-----HhhcCCEEEEccCC---CcC
Confidence 77777778887 6666654310 0 23 79999999994 678
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeec
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVP 240 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p 240 (511)
.|.+| |.+. ..++++.++.. .....+++|+|||+|.+|+|+|..|++.+.. |+++... |. +
T Consensus 469 ~~~i~---G~~~--~~v~~~~~~l~------~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~-----vtv~~~~--~~-~ 529 (671)
T 1ps9_A 469 TPPID---GIDH--PKVLSYLDVLR------DKAPVGNKVAIIGCGGIGFDTAMYLSQPGES-----TSQNIAG--FC-N 529 (671)
T ss_dssp CCCCB---TTTS--TTEEEHHHHHT------SCCCCCSEEEEECCHHHHHHHHHHHTCCSSC-----GGGCHHH--HH-H
T ss_pred CCCCC---CCCC--CcEeeHHHHhh------CCCCCCCeEEEECCChhHHHHHHHHHhcCCC-----cccchhh--hh-h
Confidence 88888 6543 24666555432 1235689999999999999999999877643 4431100 00 0
Q ss_pred CcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc-
Q 010421 241 HYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM- 319 (511)
Q Consensus 241 ~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~- 319 (511)
.++..........+... ....... ...+. -+.+....+ +-..
T Consensus 530 ---~~g~~~~~~~~~~~~~~-~~~~~~~-------------------------~~~v~----l~~~~~~~l----~~~l~ 572 (671)
T 1ps9_A 530 ---EWGIDSSLQQAGGLSPQ-GMQIPRS-------------------------PRQIV----MLQRKASKP----GQGLG 572 (671)
T ss_dssp ---HTTBCTTCCSGGGBCTT-CCCCCCC-------------------------SSEEE----EECSSCSCT----TTTSC
T ss_pred ---hhccccccccccccccc-ccccCCC-------------------------CcEEE----EEEecchhh----ccccc
Confidence 00000000000000000 0000000 00000 000000000 0000
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeCCcEEE-cCC--ceeeccEEEEecCCCCcccccccCCCcccccccCCCCccc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEF-EDN--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLP 395 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~-~dG--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
......+.+.+++.+|+++.+. +.+++++++++ .|| +++++|.||+|||++++..+.+. +
T Consensus 573 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~-------l--------- 636 (671)
T 1ps9_A 573 KTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQP-------L--------- 636 (671)
T ss_dssp TTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEECCTTHHH-------H---------
T ss_pred cccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccccHHHHHH-------H---------
Confidence 0000112355677789999886 88899888888 688 46999999999999998654320 0
Q ss_pred ceeeecCCCCCceEEEeecccch--hhhhHHHHHHHHHHHh
Q 010421 396 LYRGTIHPLIPNMAFVGYIESVS--NLHTAELRSIWLSRLI 434 (511)
Q Consensus 396 ly~~~~~~~~pnl~~iG~~~~~~--~~~~~e~qa~~~a~~l 434 (511)
. ..-+++|++|...... ....|..|+..+|..|
T Consensus 637 -----~-~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 637 -----I-DSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp -----H-TTTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred -----H-hcCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 0 1126899999776543 3567889999998764
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=208.68 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=113.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
..++|+|||||++|+.+|..| .+ .+|+|||+.+.+||.|..... +.++...+
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~------------------------p~~~~~~~ 60 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA------------------------PDHPEVKN 60 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC------------------------TTCGGGGG
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccC------------------------CCCccHHH
Confidence 357999999999999999999 56 899999999999988865211 22233456
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+..++..+++++++ .++++++|. . .|++.+. .+.||+||+|||+. .
T Consensus 61 ~~~~~~~~~~~~gv--~~~~~~~v~---~---------------------~V~~~~~------~~~~d~lVlAtGs~--~ 106 (460)
T 1cjc_A 61 VINTFTQTARSDRC--AFYGNVEVG---R---------------------DVTVQEL------QDAYHAVVLSYGAE--D 106 (460)
T ss_dssp HHHHHHHHHTSTTE--EEEBSCCBT---T---------------------TBCHHHH------HHHSSEEEECCCCC--E
T ss_pred HHHHHHHHHHhCCc--EEEeeeEEe---e---------------------EEEeccc------eEEcCEEEEecCcC--C
Confidence 77888888887776 566665441 0 1332221 46799999999963 2
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCcc-----chhhhhhccCCCcEEEECCCCCHHHHHHHHHH---------------
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKL-----DKEAASQLLKDKKVAVVGFKKSAIDLAKECAE--------------- 218 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~-----~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~--------------- 218 (511)
|+.|.+| |.+ ..+ ++++.++... +.........+++|+|||+|.+|+|+|..|++
T Consensus 107 ~~~~~ip---G~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~ 181 (460)
T 1cjc_A 107 HQALDIP---GEE-LPG-VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAAL 181 (460)
T ss_dssp ECCCCCT---TTT-STT-EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHH
T ss_pred CCCCCCC---CCC-CCc-EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHH
Confidence 4677788 654 222 5555444110 00000012368999999999999999999983
Q ss_pred -----hcCCCCCCcEEEEEecCce
Q 010421 219 -----SNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 219 -----~~~~~~~~~Vtl~~R~~~~ 237 (511)
.+. ++|+++.|++.+
T Consensus 182 ~~l~~~g~----~~V~lv~r~~~~ 201 (460)
T 1cjc_A 182 GALRQSRV----KTVWIVGRRGPL 201 (460)
T ss_dssp HHHHTCCC----CEEEEECSSCGG
T ss_pred HHHhhCCC----cEEEEEEcCChH
Confidence 222 369999998753
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-22 Score=222.81 Aligned_cols=293 Identities=13% Similarity=0.122 Sum_probs=178.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||++|++||..| .|++|+|||+++.+||+|.. . +...+ ... ...++..
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~-~-~k~~i-------------------~~~-~~~~~~~ 185 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD-T-AGEQI-------------------DGM-DSSAWIE 185 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG-S-SCCEE-------------------TTE-EHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc-C-Ccccc-------------------CCC-CHHHHHH
Confidence 47899999999999999999 89999999999999998873 1 10000 001 1334444
Q ss_pred HHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe-CCCCceeEEEeCEEEEeecccCCCC
Q 010421 82 YLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT-HNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 82 yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
.+......+ ++ .++.+++|..+.......... ...+.+.+...+ ...+....+.||+||||||+ .|
T Consensus 186 ~~~~~l~~~~~v--~~~~~~~V~~i~~~~~~~~v~-------~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs---~p 253 (965)
T 2gag_A 186 QVTSELAEAEET--THLQRTTVFGSYDANYLIAAQ-------RRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA---HE 253 (965)
T ss_dssp HHHHHHHHSTTE--EEESSEEEEEEETTTEEEEEE-------ECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE---EE
T ss_pred HHHHHHhhcCCc--EEEeCCEEEeeecCCceeeeE-------eecccccccccccCCCCceEEEECCEEEECCCC---cc
Confidence 444444444 55 677888998886410000000 000001111000 00012236899999999995 46
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
+.|.+| |.+. .| ++++........ ......+++|+|||+|.+|+|+|..|++.+.+ |+++.+++...
T Consensus 254 ~~~~ip---G~~~-~g-v~~~~~~~~~l~--~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~-----Vtvv~~~~~~~- 320 (965)
T 2gag_A 254 RPIVFE---NNDR-PG-IMLAGAVRSYLN--RYGVRAGARIAVATTNDSAYELVRELAATGGV-----VAVIDARSSIS- 320 (965)
T ss_dssp CCCCCB---TCCS-TT-EEEHHHHHHHHH--TTCEESCSSEEEEESSTTHHHHHHHHGGGTCC-----SEEEESCSSCC-
T ss_pred CCCCCC---CCCC-CC-EEEhHHHHHHHH--hcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCc-----EEEEECCCccc-
Confidence 777788 5442 22 555543321100 01234679999999999999999999988764 99999976410
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
+ .
T Consensus 321 ~---------------~--------------------------------------------------------------- 322 (965)
T 2gag_A 321 A---------------A--------------------------------------------------------------- 322 (965)
T ss_dssp H---------------H---------------------------------------------------------------
T ss_pred h---------------h---------------------------------------------------------------
Confidence 0 0
Q ss_pred cccCCchhhhhccCeEEEEeCc-eeEEeC--C----cEEEcC-------C--ceeeccEEEEecCCCCcccccccCCCcc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRAS-KWWFWK--G----GLEFED-------N--TKLEADVVILCTGYDGKKKLKAFLPEPF 383 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~----~v~~~d-------G--~~~~~D~VI~aTG~~~~~~~~~~~~~~~ 383 (511)
.+.+++.+|+++.+. +.++++ + +|++.+ | +++++|.||+|+|++|+..+......
T Consensus 323 -------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~~g-- 393 (965)
T 2gag_A 323 -------AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQG-- 393 (965)
T ss_dssp -------HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHTTC--
T ss_pred -------HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhCCC--
Confidence 012334456666664 666654 2 466764 5 56999999999999999765431110
Q ss_pred cccccCCCCcccceeeecCCCCCceEEEeecccchhhhhHHHHHHHHHHHhc
Q 010421 384 QSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLID 435 (511)
Q Consensus 384 ~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa~~~a~~l~ 435 (511)
.+..+. ....+ +..++.||||++|.......+..+..|++.+|..+.
T Consensus 394 -~i~vd~--~~~~~--v~~ts~p~IyAaGD~a~~~~l~~A~~~G~~aA~~i~ 440 (965)
T 2gag_A 394 -KLDWDT--TIHAF--VPADAVANQHLAGAMTGRLDTASALSTGAATGAAAA 440 (965)
T ss_dssp -CEEEET--TTTEE--EECSCCTTEEECGGGGTCCSHHHHHHHHHHHHHHHH
T ss_pred -cEEEcC--ccccc--ccCCCCCCEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 010011 11111 113578999999987765445578889998888764
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-21 Score=216.44 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=113.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
.+||+|||||++|+++|..| .|+ +|+|||+.+.+||.+.+ ..|. |....++.
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~-~ip~------------------------~~~~~~~~ 241 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS-EIPQ------------------------FRLPYDVV 241 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH-TSCT------------------------TTSCHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccc-cCCc------------------------ccCCHHHH
Confidence 46899999999999999999 888 79999999999998654 2111 11123466
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
++..++.+++++ .+++++.|.. +.|++.++. .+.||+||+|||+. .|+
T Consensus 242 ~~~~~~~~~~gv--~~~~~~~v~~-----------------------~~v~~~~~~-----~~~~d~vvlAtGa~--~p~ 289 (1025)
T 1gte_A 242 NFEIELMKDLGV--KIICGKSLSE-----------------------NEITLNTLK-----EEGYKAAFIGIGLP--EPK 289 (1025)
T ss_dssp HHHHHHHHTTTC--EEEESCCBST-----------------------TSBCHHHHH-----HTTCCEEEECCCCC--EEC
T ss_pred HHHHHHHHHCCc--EEEcccEecc-----------------------ceEEhhhcC-----ccCCCEEEEecCCC--CCC
Confidence 666777777887 6777655421 013333321 46799999999962 466
Q ss_pred CCCC-CCCCCCCcccceEEeccccCccchhh---------hhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 010421 161 IPAF-PNNKGPEVFEGQVLHSIDYCKLDKEA---------ASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTM 230 (511)
Q Consensus 161 ~p~~-~~~~g~~~~~g~~~hs~~~~~~~~~~---------~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl 230 (511)
.+.+ + |.+... .++++.++....... ......+++|+|||+|.+|+|+|..+.+.+. ++||+
T Consensus 290 ~l~~~~---G~~~~~-gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~----~~Vtv 361 (1025)
T 1gte_A 290 TDDIFQ---GLTQDQ-GFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGA----RRVFL 361 (1025)
T ss_dssp CCGGGT---TCCTTT-TEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTC----SEEEE
T ss_pred CCCCCC---CCCCCC-CEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCC----CEEEE
Confidence 5543 3 333222 255555442210000 0011246799999999999999999998874 25999
Q ss_pred EEecCceeec
Q 010421 231 IVRTTHWTVP 240 (511)
Q Consensus 231 ~~R~~~~~~p 240 (511)
+.|++..++|
T Consensus 362 v~r~~~~~~~ 371 (1025)
T 1gte_A 362 VFRKGFVNIR 371 (1025)
T ss_dssp ECSSCGGGCC
T ss_pred EEecChhhCC
Confidence 9998754444
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-21 Score=196.38 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=71.4
Q ss_pred hhccCeEEEEeCc-eeEEeCCcEEEcC--C--ceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCC
Q 010421 329 EAEKGKIVFKRAS-KWWFWKGGLEFED--N--TKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHP 403 (511)
Q Consensus 329 ~l~~g~v~v~~~~-i~~~~~~~v~~~d--G--~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~ 403 (511)
.+++.+|+++.+. |.+++++++++++ | +++++|.||+|+|.+++..+.. .. ..+..+..+.+.+...+.++
T Consensus 209 ~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~-~~---~~l~~~~~g~i~vd~~lq~t 284 (430)
T 3hyw_A 209 LFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVAS-AG---DKVANPANKMVIVNRCFQNP 284 (430)
T ss_dssp HHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECCHHHHT-TC---TTTBCTTTCCBCCCTTSBCS
T ss_pred HHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCchHHHh-cc---cccccCCceEEEecccccCC
Confidence 4556678888886 8899999988865 3 3699999999999998743221 11 11111223345556666678
Q ss_pred CCCceEEEeecccc-------------hhhhhHHHHHHHHHHHhc
Q 010421 404 LIPNMAFVGYIESV-------------SNLHTAELRSIWLSRLID 435 (511)
Q Consensus 404 ~~pnl~~iG~~~~~-------------~~~~~~e~qa~~~a~~l~ 435 (511)
++||+|++|..... .+...|..||+.+|++|.
T Consensus 285 ~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~ 329 (430)
T 3hyw_A 285 TYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV 329 (430)
T ss_dssp SSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHH
Confidence 99999999976431 123579999999998774
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=195.31 Aligned_cols=259 Identities=15% Similarity=0.110 Sum_probs=161.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+|||||++|+++|.+| . ++|+|||+++.+||.|....+. +.. ++ . ...++
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~------------~~g--~~----~---~~~~~-- 163 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIK------------QEG--FN----K---DSRKV-- 163 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSE------------ETT--TT----E---EHHHH--
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccc------------cCC--CC----C---CHHHH--
Confidence 36899999999999999999 7 9999999999999987652110 000 00 0 23333
Q ss_pred HHHHHHHhc--CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 82 YLESYAKHF--DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 82 yl~~~~~~~--~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
+..+.+.+ ++ .++++++|.+++.. ...+.+...+. ++...+.||+||+|||+ .|
T Consensus 164 -~~~l~~~l~~~v--~~~~~~~v~~i~~~----------------~~~~~~~~~~~--~~~~~~~~d~lvlAtGa---~~ 219 (493)
T 1y56_A 164 -VEELVGKLNENT--KIYLETSALGVFDK----------------GEYFLVPVVRG--DKLIEILAKRVVLATGA---ID 219 (493)
T ss_dssp -HHHHHHTCCTTE--EEETTEEECCCEEC----------------SSSEEEEEEET--TEEEEEEESCEEECCCE---EE
T ss_pred -HHHHHHHHhcCC--EEEcCCEEEEEEcC----------------CcEEEEEEecC--CeEEEEECCEEEECCCC---Cc
Confidence 33334433 44 56778899888872 33454443332 23346899999999995 56
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceee
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTV 239 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~ 239 (511)
..|.+| |.+. .+ +++..++..... ......+++|+|||+|.+|+| ..+.+.+ |.+.....
T Consensus 220 ~~~~~~---g~~~-~g-v~~~~~~~~~~~--~~~~~~~~~vvViGgG~~gle--~~l~~~G-------V~v~~~~~---- 279 (493)
T 1y56_A 220 STMLFE---NNDM-PG-VFRRDFALEVMN--VWEVAPGRKVAVTGSKADEVI--QELERWG-------IDYVHIPN---- 279 (493)
T ss_dssp CCCCCT---TTTS-TT-EEEHHHHHHHHH--TSCBCSCSEEEEESTTHHHHH--HHHHHHT-------CEEEECSS----
T ss_pred cCCCCC---CCCC-CC-EEEcHHHHHHHH--hcccCCCCEEEEECCCHHHHH--HHHHhCC-------cEEEeCCe----
Confidence 777777 5442 22 455443322110 011346799999999999998 3343333 33322111
Q ss_pred cCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccc
Q 010421 240 PHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQM 319 (511)
Q Consensus 240 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 319 (511)
T Consensus 280 -------------------------------------------------------------------------------- 279 (493)
T 1y56_A 280 -------------------------------------------------------------------------------- 279 (493)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCchhhhhccCeEEEEeCceeEEeCC----cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCccc
Q 010421 320 AIMPEGFFSEAEKGKIVFKRASKWWFWKG----GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLP 395 (511)
Q Consensus 320 ~~~~~~~~~~l~~g~v~v~~~~i~~~~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
+.+++.+ +|+++||+++++|.||+|+|++++..+...++..+ ..++.+.+.
T Consensus 280 ----------------------v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~---~~~~~g~i~ 334 (493)
T 1y56_A 280 ----------------------VKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKL---RFRRGYYSP 334 (493)
T ss_dssp ----------------------EEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCE---EEETTEEEE
T ss_pred ----------------------eEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCc---cccCCceee
Confidence 2222221 25577888999999999999999976654333211 001222222
Q ss_pred -ceeeecCCCCCceEEEeecccchhhhhHHHHHHHHHHHhcCC
Q 010421 396 -LYRGTIHPLIPNMAFVGYIESVSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 396 -ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa~~~a~~l~g~ 437 (511)
+...+. +.|++|++|..........+..|++.+|..+.+.
T Consensus 335 ~vd~~~~--s~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~ 375 (493)
T 1y56_A 335 VLDEYHR--IKDGIYVAGSAVSIKPHYANYLEGKLVGAYILKE 375 (493)
T ss_dssp CCCTTSE--EETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccC--cCCCEEEEeccCCccCHHHHHHHHHHHHHHHHHH
Confidence 222222 5699999998877656677889999999877553
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-19 Score=177.02 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=69.8
Q ss_pred hhccCeEEEEeCc-eeEEeC--C--cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceee-ecC
Q 010421 329 EAEKGKIVFKRAS-KWWFWK--G--GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRG-TIH 402 (511)
Q Consensus 329 ~l~~g~v~v~~~~-i~~~~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~-~~~ 402 (511)
.+++.+|+++.+. +..++. + .|.++||+++++|.|++|+|.+++..+.+ .++ .++.+.+.+..+ +.+
T Consensus 211 ~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~------~gl-~~~~G~i~VD~~tl~~ 283 (401)
T 3vrd_B 211 GTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGKIAQS------ASL-TNDSGWCPVDIRTFES 283 (401)
T ss_dssp TSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEECHHHHH------TTC-CCTTSSBCBCTTTCBB
T ss_pred HHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCchhHhh------ccc-cccCCCEEECCCccee
Confidence 3556678888764 555442 2 38889999999999999999988632211 111 245566777766 456
Q ss_pred CCCCceEEEeecccc----hhhhhHHHHHHHHHHHhc
Q 010421 403 PLIPNMAFVGYIESV----SNLHTAELRSIWLSRLID 435 (511)
Q Consensus 403 ~~~pnl~~iG~~~~~----~~~~~~e~qa~~~a~~l~ 435 (511)
+++||+|++|..... .+...+..||+.+|++|.
T Consensus 284 t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~ 320 (401)
T 3vrd_B 284 SLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVV 320 (401)
T ss_dssp SSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 889999999986532 234678999999998764
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-13 Score=134.45 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=87.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC---------CCcCc---eeccCCCCccc----c--
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS---------CSYNS---TKLQSHRSDYE----F-- 60 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~---------~~~~~---~~~~~~~~~~~----~-- 60 (511)
|++.+||+|||||++|+++|..| .|.+|+|+|+++.+|+.|.. +.... .....+..... |
T Consensus 1 MM~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (401)
T 2gqf_A 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN 80 (401)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCH
Confidence 54568999999999999999999 89999999999888665431 01100 00000100000 0
Q ss_pred ---------CCCCCCC-CCCCCCC--ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 61 ---------TDFPWPN-RDDPGFP--SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 61 ---------~~~~~~~-~~~~~~~--~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
...++.. .....|+ ...++.+++...+++.++ .++++++|+++....+. .++.|
T Consensus 81 ~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv--~i~~~~~v~~i~~~~~g------------~~~~~ 146 (401)
T 2gqf_A 81 WDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQND------------EKVRF 146 (401)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTC--EEECSCCEEEEEECCSC------------SSCCE
T ss_pred HHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEcccCc------------CCCeE
Confidence 0111100 0012233 678888999999999998 89999999999872100 02347
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.|.+.++ ++.||+||+|||..+
T Consensus 147 ~v~~~~g------~i~ad~VVlAtG~~s 168 (401)
T 2gqf_A 147 VLQVNST------QWQCKNLIVATGGLS 168 (401)
T ss_dssp EEEETTE------EEEESEEEECCCCSS
T ss_pred EEEECCC------EEECCEEEECCCCcc
Confidence 6655322 689999999999873
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=103.64 Aligned_cols=106 Identities=28% Similarity=0.296 Sum_probs=77.7
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
+||+|||||++|+.+|..| .|.+|+|+|+++..- .. . .....++.+ +......++.++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~---~~-~---------~~~~~~~~~-------~~~~~~~~~~~~ 61 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV---KG-V---------SRVPNYPGL-------LDEPSGEELLRR 61 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTT---TT-C---------SCCCCSTTC-------TTCCCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcc---cC-c---------hhhhccCCC-------cCCCCHHHHHHH
Confidence 6999999999999999999 899999999976321 10 0 000111111 112457889999
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+.++++++ .++++ +|++++.. ++.|.|++.++ ++.+|.||+|+|..
T Consensus 62 l~~~~~~~gv--~v~~~-~v~~i~~~----------------~~~~~v~~~~g------~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 62 LEAHARRYGA--EVRPG-VVKGVRDM----------------GGVFEVETEEG------VEKAERLLLCTHKD 109 (180)
T ss_dssp HHHHHHHTTC--EEEEC-CCCEEEEC----------------SSSEEEECSSC------EEEEEEEEECCTTC
T ss_pred HHHHHHHcCC--EEEeC-EEEEEEEc----------------CCEEEEEECCC------EEEECEEEECCCCC
Confidence 9999999998 88999 99999873 34466765433 68999999999953
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=116.92 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=86.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-----CcC-------ceeccCCCCccc----c----
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-----SYN-------STKLQSHRSDYE----F---- 60 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-----~~~-------~~~~~~~~~~~~----~---- 60 (511)
+.+||+|||||++|+++|..| .|.+|+|+|+++.+|+.+... .+. ......+..... |
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD 105 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence 457999999999999999999 899999999999887655210 000 000011111000 0
Q ss_pred -------CCCCCCCC-CCCCC--CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEE
Q 010421 61 -------TDFPWPNR-DDPGF--PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEV 130 (511)
Q Consensus 61 -------~~~~~~~~-~~~~~--~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v 130 (511)
...++... ....| ....++.+.+.+.+++.++ .++++++|+++... ++.|.|
T Consensus 106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv--~i~~~~~V~~i~~~----------------~~~~~V 167 (417)
T 3v76_A 106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGV--QLRLETSIGEVERT----------------ASGFRV 167 (417)
T ss_dssp HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTC--EEECSCCEEEEEEE----------------TTEEEE
T ss_pred HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCC--EEEECCEEEEEEEe----------------CCEEEE
Confidence 00111000 00111 2456888999999988898 89999999999873 445777
Q ss_pred EEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 131 AVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+.++ ++.||+||+|||..+ .|.
T Consensus 168 ~~~~g------~i~ad~VIlAtG~~S-~p~ 190 (417)
T 3v76_A 168 TTSAG------TVDAASLVVASGGKS-IPK 190 (417)
T ss_dssp EETTE------EEEESEEEECCCCSS-CGG
T ss_pred EECCc------EEEeeEEEECCCCcc-CCC
Confidence 65433 789999999999873 443
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=115.19 Aligned_cols=128 Identities=22% Similarity=0.319 Sum_probs=85.4
Q ss_pred CeEEEECCCHHHHHHHHhc-c----CCCcEEEcCCCCcCccccCCC---cCceeccCCCCccccCC--------------
Q 010421 5 SKIAIIGAGVSGLAAVKQL-R----HHNPVVFEASDSIGGIWKSCS---YNSTKLQSHRSDYEFTD-------------- 62 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~----g~~v~v~e~~~~~GG~w~~~~---~~~~~~~~~~~~~~~~~-------------- 62 (511)
+||+|||||++|+++|..| . |++|+|||+++.+||.|.... +++...+.....+....
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~ 81 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL 81 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence 5999999999999999999 5 689999999999999876522 12222222222211100
Q ss_pred -----CCCCCC--------CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 63 -----FPWPNR--------DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 63 -----~~~~~~--------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
.++... ....|.....+..+++.+++..+. .++++++|++|++. ++.|+
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~--~i~~~~~V~~i~~~----------------~~~~~ 143 (342)
T 3qj4_A 82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGA--EVYFRHRVTQINLR----------------DDKWE 143 (342)
T ss_dssp HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTC--EEESSCCEEEEEEC----------------SSSEE
T ss_pred hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCC--EEEeCCEEEEEEEc----------------CCEEE
Confidence 011100 001222233445667777777776 89999999999983 55688
Q ss_pred EEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
|++.++. .+.||.||+|+...
T Consensus 144 v~~~~g~-----~~~ad~vV~A~p~~ 164 (342)
T 3qj4_A 144 VSKQTGS-----PEQFDLIVLTMPVP 164 (342)
T ss_dssp EEESSSC-----CEEESEEEECSCHH
T ss_pred EEECCCC-----EEEcCEEEECCCHH
Confidence 8876653 57999999999853
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.3e-10 Score=112.83 Aligned_cols=137 Identities=16% Similarity=0.147 Sum_probs=86.1
Q ss_pred CCC-CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC----cCccccCCCc--------------------CceeccC
Q 010421 1 MAN-YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS----IGGIWKSCSY--------------------NSTKLQS 53 (511)
Q Consensus 1 m~~-~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~----~GG~w~~~~~--------------------~~~~~~~ 53 (511)
|++ .+||+|||||++|+++|..| .|++|+|+|+.+. .|........ .+.....
T Consensus 1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 80 (421)
T 3nix_A 1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVR 80 (421)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEE
T ss_pred CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEe
Confidence 543 48999999999999999999 8999999999763 2322111000 0011100
Q ss_pred CCCc--cccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 54 HRSD--YEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 54 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
.... +.+...............+..+...|.+.+++.++ .++++++|++++.. ++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv--~i~~~~~v~~i~~~----------------~~~~~v~ 142 (421)
T 3nix_A 81 GKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGV--DVEYEVGVTDIKFF----------------GTDSVTT 142 (421)
T ss_dssp TTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTC--EEECSEEEEEEEEE----------------TTEEEEE
T ss_pred CCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEe----------------CCEEEEE
Confidence 0000 01111000000012235688899999999988888 89999999999873 3456666
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+...+ ++..++.+|.||.|+|..+
T Consensus 143 v~~~~-g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 143 IEDIN-GNKREIEARFIIDASGYGR 166 (421)
T ss_dssp EEETT-SCEEEEEEEEEEECCGGGC
T ss_pred EEcCC-CCEEEEEcCEEEECCCCch
Confidence 65532 4445689999999999874
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=114.86 Aligned_cols=133 Identities=11% Similarity=0.090 Sum_probs=83.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc------CC----------------CcCceeccCCCCccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK------SC----------------SYNSTKLQSHRSDYE 59 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~------~~----------------~~~~~~~~~~~~~~~ 59 (511)
.+||+||||||+|+++|..| .|++|+|+||++.+|.... .. ...+.++..+.....
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP 83 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence 58999999999999999999 9999999999887653211 00 011111111111110
Q ss_pred cC-CCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCC
Q 010421 60 FT-DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNS 137 (511)
Q Consensus 60 ~~-~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~ 137 (511)
.. ..............+..+..+|.+.+.+.+. .++++++|+.+... ++... +.... +
T Consensus 84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~--~~~~~~~v~~~~~~----------------~~~~~~v~~~~--~ 143 (397)
T 3oz2_A 84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGA--DVWVKSPALGVIKE----------------NGKVAGAKIRH--N 143 (397)
T ss_dssp EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTC--EEESSCCEEEEEEE----------------TTEEEEEEEEE--T
T ss_pred eeccccccCCceeEEEEHHHHHHHHHHHHHhcCc--EEeeeeeeeeeeec----------------cceeeeeeecc--c
Confidence 00 0000000001224688889999999988888 89999999998873 22222 22222 2
Q ss_pred CceeEEEeCEEEEeecccC
Q 010421 138 NSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~ 156 (511)
++..++.+|.||.|.|..|
T Consensus 144 ~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 144 NEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp TEEEEEEEEEEEECCCTTC
T ss_pred ccceEEEEeEEEeCCcccc
Confidence 3445789999999999875
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=102.07 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=61.7
Q ss_pred hccCeEEEEeCceeEEeCC--c--EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCCCC
Q 010421 330 AEKGKIVFKRASKWWFWKG--G--LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLI 405 (511)
Q Consensus 330 l~~g~v~v~~~~i~~~~~~--~--v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~ 405 (511)
+++.+|+++.+.+.+++.+ + |.+++| ++++|.||+|||.+++. ...++.++ + .+.+.+... +.++.
T Consensus 66 ~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~--~~~~g~~~-----~-~g~i~vd~~-~~t~~ 135 (180)
T 2ywl_A 66 ARRYGAEVRPGVVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTL--PSLLGLTR-----R-GAYIDTDEG-GRTSY 135 (180)
T ss_dssp HHHTTCEEEECCCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHH--HHHHTCCE-----E-TTEECCCTT-CBCSS
T ss_pred HHHcCCEEEeCEEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCc--cccCCCCc-----c-CceEEeCCC-CCcCC
Confidence 3444566666666666542 2 666778 89999999999999853 12122111 1 222222222 23478
Q ss_pred CceEEEeecccch--hhhhHHHHHHHHHHHhcC
Q 010421 406 PNMAFVGYIESVS--NLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 406 pnl~~iG~~~~~~--~~~~~e~qa~~~a~~l~g 436 (511)
|++|++|...... ....+..|++.+|..+.+
T Consensus 136 ~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 168 (180)
T 2ywl_A 136 PRVYAAGVARGKVPGHAIISAGDGAYVAVHLVS 168 (180)
T ss_dssp TTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCcchhhHHHHHHhHHHHHHHHHH
Confidence 9999999876543 456788899998887754
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.3e-10 Score=102.33 Aligned_cols=121 Identities=14% Similarity=0.014 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCcc-ccCCCCCCCCCCCCCCChHH
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDY-EFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (511)
++.+||+|||||++|+.+|..| .|.+|+|+|++....|.|.. +.........++ .+.+ ..-+...+
T Consensus 1 M~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~---~~~~~~~~~~~~~~~~d--------~~g~~~~~ 69 (232)
T 2cul_A 1 MAAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFL---PPKPPFPPGSLLERAYD--------PKDERVWA 69 (232)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS---CCCSCCCTTCHHHHHCC--------TTCCCHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccC---ccccccchhhHHhhhcc--------CCCCCHHH
Confidence 1458999999999999999999 89999999998443342221 111000000000 0100 00115668
Q ss_pred HHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 79 ILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 79 ~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+..++.+.+++. ++ .++ +++|+++...+ +..+.|.+.++. ++.+|.||+|+|.++
T Consensus 70 ~~~~l~~~~~~~~gv--~i~-~~~v~~i~~~~---------------~~v~~v~~~~g~-----~i~a~~VV~A~G~~s 125 (232)
T 2cul_A 70 FHARAKYLLEGLRPL--HLF-QATATGLLLEG---------------NRVVGVRTWEGP-----PARGEKVVLAVGSFL 125 (232)
T ss_dssp HHHHHHHHHHTCTTE--EEE-ECCEEEEEEET---------------TEEEEEEETTSC-----CEECSEEEECCTTCS
T ss_pred HHHHHHHHHHcCCCc--EEE-EeEEEEEEEeC---------------CEEEEEEECCCC-----EEECCEEEECCCCCh
Confidence 888898888887 76 555 67999998731 222445554442 689999999999763
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=116.41 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=86.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCcee-ccCCCCccc-cCCCCCCCCCCCCCCChHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTK-LQSHRSDYE-FTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (511)
..+||+|||||++|+++|..| .|++|+|+|+++.+|+....+.++... .-....... ...+... .....+..+
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~---~~~~~~~~~ 167 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTG---TLDHISIRQ 167 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCT---TCCEEEHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCcccccccccc---ccccCCHHH
Confidence 357999999999999999999 899999999998877532111111000 000000000 0011100 011235678
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++|.+.+++.++ .++++++|+++....+ +.+.|.|++.+..+++..++.+|.||+|+|..|
T Consensus 168 l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~-------------~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S 230 (497)
T 2bry_A 168 LQLLLLKVALLLGV--EIHWGVKFTGLQPPPR-------------KGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF 230 (497)
T ss_dssp HHHHHHHHHHHTTC--EEEESCEEEEEECCCS-------------TTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred HHHHHHHHHHhCCC--EEEeCCEEEEEEEecC-------------CCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence 88999999988888 8999999999986210 134688887543123223688999999999774
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=108.70 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=83.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCCCcCccccCC-CcCc---------e----e-ccCCCCccccCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASDSIGGIWKSC-SYNS---------T----K-LQSHRSDYEFTD 62 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~~~GG~w~~~-~~~~---------~----~-~~~~~~~~~~~~ 62 (511)
|++.+||+|||||++|+++|..| .|++ |+|+|+.+.++...... .++. + . ...+...+.+.+
T Consensus 1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~ 80 (410)
T 3c96_A 1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYID 80 (410)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEc
Confidence 65678999999999999999999 8999 99999987654321110 0000 0 0 000000011100
Q ss_pred --------CCC----CCCCCCCCCChHHHHHHHHHHHHh-cC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 63 --------FPW----PNRDDPGFPSYTEILDYLESYAKH-FD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 63 --------~~~----~~~~~~~~~~~~~~~~yl~~~~~~-~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
.+. ..........+.++.++|.+.+.+ .+ . .++++++|++++. ++.+
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~--~v~~~~~v~~i~~-----------------~~~v 141 (410)
T 3c96_A 81 QSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ--AVRTGLGVERIEE-----------------RDGR 141 (410)
T ss_dssp TTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTT--SEEESEEEEEEEE-----------------ETTE
T ss_pred CCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCc--EEEECCEEEEEec-----------------CCcc
Confidence 000 000011234567888888888765 45 3 6999999999986 2246
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+|++.+..+++..++.+|.||.|+|.+|
T Consensus 142 ~v~~~~~~~g~~~~~~ad~vV~AdG~~S 169 (410)
T 3c96_A 142 VLIGARDGHGKPQALGADVLVGADGIHS 169 (410)
T ss_dssp EEEEEEETTSCEEEEEESEEEECCCTTC
T ss_pred EEEEecCCCCCceEEecCEEEECCCccc
Confidence 7877762223334789999999999875
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=110.40 Aligned_cols=128 Identities=17% Similarity=0.206 Sum_probs=80.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc-----CccccCCCcCceec-------------cCCCCccccC-
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI-----GGIWKSCSYNSTKL-------------QSHRSDYEFT- 61 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~-----GG~w~~~~~~~~~~-------------~~~~~~~~~~- 61 (511)
+.+||+|||||++|+++|..| .|++|+|||+.+.+ |+.+......+... ..+... .+.
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~~ 103 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGV-NIAD 103 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCE-EEEC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccce-EEEC
Confidence 457999999999999999999 89999999998654 33332210000000 000000 000
Q ss_pred -------CC--CCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEE
Q 010421 62 -------DF--PWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAV 132 (511)
Q Consensus 62 -------~~--~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (511)
.. +...........+..+.++|.+.+.. . .++++++|++++.. ++.|+|++
T Consensus 104 ~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~----------------~~~v~v~~ 163 (398)
T 2xdo_A 104 EKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEN--D--TVIWDRKLVMLEPG----------------KKKWTLTF 163 (398)
T ss_dssp SSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCT--T--SEEESCCEEEEEEC----------------SSSEEEEE
T ss_pred CCCCchhhccccccCCCCCceECHHHHHHHHHhhcCC--C--EEEECCEEEEEEEC----------------CCEEEEEE
Confidence 00 10000011224567777777665432 2 68999999999973 45688877
Q ss_pred EeCCCCceeEEEeCEEEEeecccC
Q 010421 133 QTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 133 ~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++. ++.+|.||.|+|.+|
T Consensus 164 ~~g~-----~~~ad~vV~AdG~~S 182 (398)
T 2xdo_A 164 ENKP-----SETADLVILANGGMS 182 (398)
T ss_dssp TTSC-----CEEESEEEECSCTTC
T ss_pred CCCc-----EEecCEEEECCCcch
Confidence 6654 689999999999875
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-09 Score=111.28 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=88.3
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--------------CcCceeccCCCCccccCCCC-
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--------------SYNSTKLQSHRSDYEFTDFP- 64 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--------------~~~~~~~~~~~~~~~~~~~~- 64 (511)
++.+||+||||||+|+++|..| .|++|+|+|+.+.++..-... ..+.+.-..+.....|....
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 88 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI 88 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence 4568999999999999999999 899999999987654211100 00000000011111111100
Q ss_pred ----CCCCC-CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCc
Q 010421 65 ----WPNRD-DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS 139 (511)
Q Consensus 65 ----~~~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (511)
.+... .........+.+.|.+.+++.++ .++++++|++++.. ++.++|++.++. +
T Consensus 89 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~~v~v~~~~~~-g- 148 (500)
T 2qa1_A 89 DFGVLEGAWQAAKTVPQSVTETHLEQWATGLGA--DIRRGHEVLSLTDD----------------GAGVTVEVRGPE-G- 148 (500)
T ss_dssp EGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTC--EEEETCEEEEEEEE----------------TTEEEEEEEETT-E-
T ss_pred ccccCCCCCCceeecCHHHHHHHHHHHHHHCCC--EEECCcEEEEEEEc----------------CCeEEEEEEcCC-C-
Confidence 00000 01224577888999999988887 89999999999873 445778887764 2
Q ss_pred eeEEEeCEEEEeecccC
Q 010421 140 IQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~ 156 (511)
..++.+|+||.|.|.+|
T Consensus 149 ~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 149 KHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEEEEESEEEECCCTTC
T ss_pred CEEEEeCEEEECCCcch
Confidence 34789999999999985
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=112.25 Aligned_cols=135 Identities=13% Similarity=0.028 Sum_probs=85.0
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc--CccccCC-----CcCceeccCCC---------CccccCC-
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI--GGIWKSC-----SYNSTKLQSHR---------SDYEFTD- 62 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~--GG~w~~~-----~~~~~~~~~~~---------~~~~~~~- 62 (511)
++.+||+|||||++|+++|..| .|++|+|+|+.+.. |..+... .+..+.+..+. ....+..
T Consensus 4 ~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 83 (453)
T 3atr_A 4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPD 83 (453)
T ss_dssp EEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTT
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCC
Confidence 3458999999999999999999 89999999998753 2222210 00000000000 0000000
Q ss_pred ----CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCC
Q 010421 63 ----FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNS 137 (511)
Q Consensus 63 ----~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~ 137 (511)
++++. ......+.++.+.|.+.+.+.++ .++++++|+++... ++.+. |++.+..+
T Consensus 84 ~~~~~~~~~--~~~~i~r~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~----------------~~~v~gv~~~~~~~ 143 (453)
T 3atr_A 84 MQTVWTVNG--EGFELNAPLYNQRVLKEAQDRGV--EIWDLTTAMKPIFE----------------DGYVKGAVLFNRRT 143 (453)
T ss_dssp SSCEEEEEE--EEEEECHHHHHHHHHHHHHHTTC--EEESSEEEEEEEEE----------------TTEEEEEEEEETTT
T ss_pred CceEEeECC--CcEEEcHHHHHHHHHHHHHHcCC--EEEeCcEEEEEEEE----------------CCEEEEEEEEEcCC
Confidence 00000 01224677888999988888888 89999999999873 33333 55654312
Q ss_pred CceeEEEeCEEEEeecccC
Q 010421 138 NSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 138 ~~~~~~~~d~vVlAtG~~~ 156 (511)
++..++.+|.||.|+|..|
T Consensus 144 G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 144 NEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp TEEEEEECSEEEECCGGGC
T ss_pred CceEEEEcCEEEECcCCch
Confidence 4444789999999999875
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-09 Score=112.19 Aligned_cols=131 Identities=17% Similarity=0.278 Sum_probs=81.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC-------ccccCCCc-C---------cee------cc----CC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG-------GIWKSCSY-N---------STK------LQ----SH 54 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G-------G~w~~~~~-~---------~~~------~~----~~ 54 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+.++ +.|..... + +.. +. .+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 37999999999999999999 899999999987663 33332100 0 000 00 00
Q ss_pred CC----cc-ccCCCCCCCCC---CCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCC
Q 010421 55 RS----DY-EFTDFPWPNRD---DPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPA 123 (511)
Q Consensus 55 ~~----~~-~~~~~~~~~~~---~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~ 123 (511)
.. .+ .|..+..+... ...+. ...++.+.+.+.+++.++ .++++++|+++...+
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv--~I~~~t~V~~I~~~~-------------- 250 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGG--EIRFSTRVDDLHMED-------------- 250 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTC--EEESSCCEEEEEESS--------------
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEEeC--------------
Confidence 00 00 00000011000 00011 135677778888888888 899999999998731
Q ss_pred CCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 124 GHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 124 ~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+..+.|++.++. ++.||.||+|+|..+
T Consensus 251 -~~v~gV~l~~G~-----~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 251 -GQITGVTLSNGE-----EIKSRHVVLAVGHSA 277 (549)
T ss_dssp -SBEEEEEETTSC-----EEECSCEEECCCTTC
T ss_pred -CEEEEEEECCCC-----EEECCEEEECCCCCh
Confidence 233457666554 799999999999763
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-09 Score=108.96 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=89.5
Q ss_pred CC-CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC----------------------C--cCce----
Q 010421 1 MA-NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC----------------------S--YNST---- 49 (511)
Q Consensus 1 m~-~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~----------------------~--~~~~---- 49 (511)
|+ +.+||+|||||++|+++|..| .|++|+|+|+.+.++..-... . ....
T Consensus 1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (535)
T 3ihg_A 1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFV 80 (535)
T ss_dssp CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCE
T ss_pred CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCccccccee
Confidence 54 358999999999999999999 899999999987653211100 0 0000
Q ss_pred --eccCCC--Ccc----ccCC----CCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCC
Q 010421 50 --KLQSHR--SDY----EFTD----FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSG 117 (511)
Q Consensus 50 --~~~~~~--~~~----~~~~----~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~ 117 (511)
.+.... ... .+.. ............++..+..+|.+.+++.++ .++++++|++++..
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~--------- 149 (535)
T 3ihg_A 81 IRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGG--AIRFGTRLLSFRQH--------- 149 (535)
T ss_dssp EEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEE---------
T ss_pred eeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEC---------
Confidence 000000 000 0000 000000013345788999999999988887 89999999999984
Q ss_pred CCCCCCCCC----ceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 118 GNLLPAGHP----VWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 118 ~~~~~~~~~----~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++ .+++++.++++ ..++.+|+||.|+|.+|
T Consensus 150 -------~~~~~~~v~v~~~~~~~--~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 150 -------DDDAGAGVTARLAGPDG--EYDLRAGYLVGADGNRS 183 (535)
T ss_dssp -------CGGGCSEEEEEEEETTE--EEEEEEEEEEECCCTTC
T ss_pred -------CCCccccEEEEEEcCCC--eEEEEeCEEEECCCCcc
Confidence 33 67888877642 34799999999999875
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=9.6e-10 Score=110.98 Aligned_cols=129 Identities=20% Similarity=0.205 Sum_probs=82.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc---ccC---------------------CCcCceeccCCC-
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI---WKS---------------------CSYNSTKLQSHR- 55 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~---w~~---------------------~~~~~~~~~~~~- 55 (511)
+.+||+|||||++|+++|..| .|++|+|+|+.+.++.. ... .....+......
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS 101 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence 357999999999999999999 89999999998765311 000 001111111110
Q ss_pred --CccccCCCCCC--CCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE
Q 010421 56 --SDYEFTDFPWP--NRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA 131 (511)
Q Consensus 56 --~~~~~~~~~~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (511)
....++...+. .........+..+.++|.+.+.+ . .++++++|++++.. ++.|+|+
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~----------------~~~v~v~ 161 (407)
T 3rp8_A 102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--D--SVQFGKRVTRCEED----------------ADGVTVW 161 (407)
T ss_dssp CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--G--GEEESCCEEEEEEE----------------TTEEEEE
T ss_pred CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--C--EEEECCEEEEEEec----------------CCcEEEE
Confidence 00111100000 00012334678888888888866 3 79999999999973 4567777
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.++. ++.+|.||.|+|.+|
T Consensus 162 ~~~g~-----~~~a~~vV~AdG~~S 181 (407)
T 3rp8_A 162 FTDGS-----SASGDLLIAADGSHS 181 (407)
T ss_dssp ETTSC-----EEEESEEEECCCTTC
T ss_pred EcCCC-----EEeeCEEEECCCcCh
Confidence 76654 799999999999875
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=113.91 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=84.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--------------CcC---ceeccCCCC--------
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--------------SYN---STKLQSHRS-------- 56 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--------------~~~---~~~~~~~~~-------- 56 (511)
.+||+|||||++|+++|..| .|++|+|||+.+......... .++ .........
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 128 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQ 128 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcccc
Confidence 47999999999999999999 899999999987654111100 000 000000000
Q ss_pred ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCC
Q 010421 57 DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHN 136 (511)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (511)
.+.+...+.+.. .........+.+.|.+.+++.++ .++++++|++++.. ++.++|++.+.+
T Consensus 129 ~~~~~~~~~~~~-~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~l~~~----------------~~~v~v~~~~~~ 189 (570)
T 3fmw_A 129 GLDFGLVDTRHP-YTGLVPQSRTEALLAEHAREAGA--EIPRGHEVTRLRQD----------------AEAVEVTVAGPS 189 (570)
T ss_dssp CCBGGGSCCSCC-SBBCCCHHHHHHHHHHHHHHHTE--ECCBSCEEEECCBC----------------SSCEEEEEEETT
T ss_pred cccccccCCCCC-eeEEeCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEc----------------CCeEEEEEEeCC
Confidence 111111111111 12346788899999999988887 88999999999872 456778775432
Q ss_pred CCceeEEEeCEEEEeecccC
Q 010421 137 SNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 137 ~~~~~~~~~d~vVlAtG~~~ 156 (511)
++ .++.+|.||.|+|..|
T Consensus 190 -G~-~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 190 -GP-YPVRARYGVGCDGGRS 207 (570)
T ss_dssp -EE-EEEEESEEEECSCSSC
T ss_pred -Cc-EEEEeCEEEEcCCCCc
Confidence 21 3799999999999875
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-09 Score=105.55 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+.+.+.+.+++.+. .++++++|++++.. +++.|.|.+.++ +..++.+|.||+|+|.
T Consensus 148 ~~~~~~~~l~~~~~~~Gv--~i~~~~~v~~i~~~---------------~~~~~~v~~~~g---~~~~~~a~~VV~A~G~ 207 (369)
T 3dme_A 148 DSHALMLAYQGDAESDGA--QLVFHTPLIAGRVR---------------PEGGFELDFGGA---EPMTLSCRVLINAAGL 207 (369)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEC---------------TTSSEEEEECTT---SCEEEEEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEc---------------CCceEEEEECCC---ceeEEEeCEEEECCCc
Confidence 456777788888888888 89999999999983 134577766544 2237899999999998
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
++
T Consensus 208 ~s 209 (369)
T 3dme_A 208 HA 209 (369)
T ss_dssp GH
T ss_pred ch
Confidence 74
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-09 Score=109.41 Aligned_cols=134 Identities=15% Similarity=0.116 Sum_probs=88.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--------------CcCceeccCCCCccccCCCC--
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--------------SYNSTKLQSHRSDYEFTDFP-- 64 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--------------~~~~~~~~~~~~~~~~~~~~-- 64 (511)
+.+||+||||||+|+++|..| .|++|+|+|+.+.++..-... ..+.+.-..+.....+....
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 90 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD 90 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence 457999999999999999999 899999999987654211110 00000000011111111100
Q ss_pred ---CCCCC-CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCce
Q 010421 65 ---WPNRD-DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSI 140 (511)
Q Consensus 65 ---~~~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (511)
.+... .....+...+.+.|.+.+.+.++ .++++++|++++.. ++.++|++.++. + .
T Consensus 91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~----------------~~~v~v~~~~~~-g-~ 150 (499)
T 2qa2_A 91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGA--ELLRGHTVRALTDE----------------GDHVVVEVEGPD-G-P 150 (499)
T ss_dssp GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTC--EEEESCEEEEEEEC----------------SSCEEEEEECSS-C-E
T ss_pred cccCCCCCCceEecCHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEe----------------CCEEEEEEEcCC-C-c
Confidence 00000 01234578889999999988887 89999999999973 445778887764 3 3
Q ss_pred eEEEeCEEEEeecccC
Q 010421 141 QRYGFEFLVVCTGKYG 156 (511)
Q Consensus 141 ~~~~~d~vVlAtG~~~ 156 (511)
.++.+|+||.|.|.+|
T Consensus 151 ~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 151 RSLTTRYVVGCDGGRS 166 (499)
T ss_dssp EEEEEEEEEECCCTTC
T ss_pred EEEEeCEEEEccCccc
Confidence 5789999999999985
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=109.00 Aligned_cols=130 Identities=14% Similarity=0.013 Sum_probs=83.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc---cccC-----------CC----------cCceeccCCCC-
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG---IWKS-----------CS----------YNSTKLQSHRS- 56 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG---~w~~-----------~~----------~~~~~~~~~~~- 56 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+.+.. .... .. ...+....+..
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~ 85 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGE 85 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCC
Confidence 47999999999999999999 8999999999865511 0000 00 00000000000
Q ss_pred -ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce--EEEE
Q 010421 57 -DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW--EVAV 132 (511)
Q Consensus 57 -~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~--~v~~ 132 (511)
...+...............+.++.+.|.+.+++. ++ .++++++|++++.. ++.| .|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~----------------~~~v~g~v~~ 147 (399)
T 2x3n_A 86 LLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATV--EMLFETRIEAVQRD----------------ERHAIDQVRL 147 (399)
T ss_dssp EEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTE--EEECSCCEEEEEEC----------------TTSCEEEEEE
T ss_pred EEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCc--EEEcCCEEEEEEEc----------------CCceEEEEEE
Confidence 0011100000000012357788899998888877 77 78999999999873 4456 7777
Q ss_pred EeCCCCceeEEEeCEEEEeecccC
Q 010421 133 QTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 133 ~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++. ++.+|.||.|+|.+|
T Consensus 148 ~~g~-----~~~ad~vV~AdG~~s 166 (399)
T 2x3n_A 148 NDGR-----VLRPRVVVGADGIAS 166 (399)
T ss_dssp TTSC-----EEEEEEEEECCCTTC
T ss_pred CCCC-----EEECCEEEECCCCCh
Confidence 5543 789999999999875
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=107.35 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=84.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC----------------------CcCc------eeccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC----------------------SYNS------TKLQS 53 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~----------------------~~~~------~~~~~ 53 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+.++...... ..+. ..+..
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 105 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR 105 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence 36999999999999999999 899999999987765322110 0000 00000
Q ss_pred CCC--ccccCCCCC--------CCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCC
Q 010421 54 HRS--DYEFTDFPW--------PNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPA 123 (511)
Q Consensus 54 ~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~ 123 (511)
... ...+. ++. .............+.++|.+.+++. ++++++|++++..
T Consensus 106 ~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~--------------- 164 (549)
T 2r0c_A 106 VGGHEVYRIP-LGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQR--------------- 164 (549)
T ss_dssp BTSCEEEEEC-CCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEEC---------------
T ss_pred CCCceeEeec-ccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEe---------------
Confidence 000 11111 100 0000112346778888888888765 8999999999873
Q ss_pred CCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 124 GHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 124 ~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.+++++.+..+++..++.+|+||.|+|.+|
T Consensus 165 -~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S 196 (549)
T 2r0c_A 165 -DDHVRATITDLRTGATRAVHARYLVACDGASS 196 (549)
T ss_dssp -SSCEEEEEEETTTCCEEEEEEEEEEECCCTTC
T ss_pred -CCEEEEEEEECCCCCEEEEEeCEEEECCCCCc
Confidence 45678888774334445799999999999885
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.91 E-value=8.7e-09 Score=98.51 Aligned_cols=133 Identities=14% Similarity=0.118 Sum_probs=78.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCcCcc-ccCC-CcCceeccCCC-CccccCCCCCCCCCCCCC--CC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSIGGI-WKSC-SYNSTKLQSHR-SDYEFTDFPWPNRDDPGF--PS 75 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~GG~-w~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~ 75 (511)
.+||+|||||++|+++|..| . |.+|+|+|+++.+||. |... .+..+.+..+. ..+.-.+.++... ...+ ..
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~-~~~~~~~~ 117 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQ-DTYVVVKH 117 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEEC-SSEEEESC
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccC-CCEEEecC
Confidence 46999999999999999999 5 8999999999888763 3221 11111111000 0000001222111 0111 14
Q ss_pred hHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEe---------CCCCceeEEE
Q 010421 76 YTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQT---------HNSNSIQRYG 144 (511)
Q Consensus 76 ~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---------~~~~~~~~~~ 144 (511)
..++...+.+.+.+ .++ .++++++|+++... +++ ..|.+.. +..++..++.
T Consensus 118 ~~~~~~~l~~~~~~~~gv--~i~~~~~V~~i~~~----------------~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ 179 (284)
T 1rp0_A 118 AALFTSTIMSKLLARPNV--KLFNAVAAEDLIVK----------------GNRVGGVVTNWALVAQNHHTQSCMDPNVME 179 (284)
T ss_dssp HHHHHHHHHHHHHTSTTE--EEEETEEEEEEEEE----------------TTEEEEEEEEEHHHHTCTTTSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHhcCCC--EEEcCcEEEEEEec----------------CCeEEEEEEeccccccccCccccCceEEEE
Confidence 55666666555544 577 78999999999873 222 2344431 1112334799
Q ss_pred eCEEEEeeccc
Q 010421 145 FEFLVVCTGKY 155 (511)
Q Consensus 145 ~d~vVlAtG~~ 155 (511)
+|.||+|+|..
T Consensus 180 ad~VV~AtG~~ 190 (284)
T 1rp0_A 180 AKIVVSSCGHD 190 (284)
T ss_dssp EEEEEECCCSS
T ss_pred CCEEEECCCCc
Confidence 99999999965
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=112.66 Aligned_cols=168 Identities=12% Similarity=0.115 Sum_probs=94.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC-CcCccccCCCcCceeccC----------CCCc---------ccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD-SIGGIWKSCSYNSTKLQS----------HRSD---------YEF 60 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~~----------~~~~---------~~~ 60 (511)
..+||+|||||++|++||..| .|.+|+|+|++. .+|.... .|...... .... ..|
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~C---nps~ggia~~~lv~ei~algg~~~~~~d~~gi~f 103 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSC---NPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF 103 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS---SSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccc---cccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence 357999999999999999999 899999999974 3442111 11110000 0000 001
Q ss_pred CCCC---CCCCC-CCCCCChHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC
Q 010421 61 TDFP---WPNRD-DPGFPSYTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH 135 (511)
Q Consensus 61 ~~~~---~~~~~-~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (511)
.... .+... ......+..+...+...+++ .++ .+ ++++|+.+...+ +..+.|.+.++
T Consensus 104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV--~I-~~~~V~~L~~e~---------------g~V~GV~t~dG 165 (651)
T 3ces_A 104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNL--MI-FQQAVEDLIVEN---------------DRVVGAVTQMG 165 (651)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTE--EE-EECCEEEEEESS---------------SBEEEEEETTS
T ss_pred hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCC--EE-EEEEEEEEEecC---------------CEEEEEEECCC
Confidence 0000 00000 00112456777888888877 466 56 788999998621 22234555433
Q ss_pred CCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHH
Q 010421 136 NSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKE 215 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~ 215 (511)
. .+.||.||+|||.++ ..+.++ |...+ .+.+ +| |.+|.+++..
T Consensus 166 ---~--~I~Ad~VVLATGt~s---~~~~i~---G~~~~----------------------~~gr---iG-g~~a~eLA~~ 208 (651)
T 3ces_A 166 ---L--KFRAKAVVLTVGTFL---DGKIHI---GLDNY----------------------SGGR---AG-DPPSIPLSRR 208 (651)
T ss_dssp ---E--EEEEEEEEECCSTTT---CCEEEC---C---------------------------------------CCHHHHH
T ss_pred ---C--EEECCEEEEcCCCCc---cCcccc---CcccC----------------------CCCC---cc-chhhhHHHHH
Confidence 2 789999999999653 444445 43321 1223 56 7888999999
Q ss_pred HHHhcCCCCCCcEEEEEe
Q 010421 216 CAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 216 l~~~~~~~~~~~Vtl~~R 233 (511)
|.+.+.. |+.+..
T Consensus 209 L~~lG~~-----v~~~~t 221 (651)
T 3ces_A 209 LRELPLR-----VGRLKT 221 (651)
T ss_dssp HHTTTCC-----EEEECC
T ss_pred HHhcCCe-----EEEecC
Confidence 9888765 887753
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.6e-09 Score=105.61 Aligned_cols=128 Identities=18% Similarity=0.140 Sum_probs=79.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc----CccccCC-----------CcCceeccCCCCccccCCC--
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI----GGIWKSC-----------SYNSTKLQSHRSDYEFTDF-- 63 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~----GG~w~~~-----------~~~~~~~~~~~~~~~~~~~-- 63 (511)
+.+||+|||||++|+++|..| .|++|+|+|+.+.. |+.+... ..+ .....+...+.+.+.
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~ 82 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL-DSISVPSSSMEYVDALT 82 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG-GGTCBCCCEEEEEETTT
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc-ccccccccceEEEecCC
Confidence 357999999999999999999 89999999997653 2111110 000 000011111111100
Q ss_pred --CCCC-CCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCce
Q 010421 64 --PWPN-RDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSI 140 (511)
Q Consensus 64 --~~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (511)
.... ...........+.++|.+.+ -+. .++++++|++++.. ++.|+|++.++.
T Consensus 83 g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~--~i~~~~~v~~i~~~----------------~~~v~v~~~~g~---- 138 (397)
T 2vou_A 83 GERVGSVPADWRFTSYDSIYGGLYELF--GPE--RYHTSKCLVGLSQD----------------SETVQMRFSDGT---- 138 (397)
T ss_dssp CCEEEEEECCCCEEEHHHHHHHHHHHH--CST--TEETTCCEEEEEEC----------------SSCEEEEETTSC----
T ss_pred CCccccccCcccccCHHHHHHHHHHhC--CCc--EEEcCCEEEEEEec----------------CCEEEEEECCCC----
Confidence 0000 00012234566777776654 245 79999999999873 456788776653
Q ss_pred eEEEeCEEEEeecccC
Q 010421 141 QRYGFEFLVVCTGKYG 156 (511)
Q Consensus 141 ~~~~~d~vVlAtG~~~ 156 (511)
++.+|.||.|+|.+|
T Consensus 139 -~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 139 -KAEANWVIGADGGAS 153 (397)
T ss_dssp -EEEESEEEECCCTTC
T ss_pred -EEECCEEEECCCcch
Confidence 789999999999875
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.8e-09 Score=107.53 Aligned_cols=134 Identities=18% Similarity=0.166 Sum_probs=83.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC----CcCccccCCCcC------cee-----------------ccCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD----SIGGIWKSCSYN------STK-----------------LQSH 54 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~----~~GG~w~~~~~~------~~~-----------------~~~~ 54 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+ ..|.....+... ++. ....
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 86 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKE 86 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCC
Confidence 37999999999999999999 899999999986 233221110000 000 0000
Q ss_pred CC--ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEE
Q 010421 55 RS--DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVA 131 (511)
Q Consensus 55 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~ 131 (511)
.. .+.+...+...........+..+.++|.+.+.+.++ .++++++|+++... ++.. .|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~~~~V~~v~~~----------------~~~v~gv~ 148 (512)
T 3e1t_A 87 PEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGV--DVRERHEVIDVLFE----------------GERAVGVR 148 (512)
T ss_dssp SSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEE----------------TTEEEEEE
T ss_pred ccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEE----------------CCEEEEEE
Confidence 00 011111111000012235788899999999988888 89999999999973 3322 255
Q ss_pred EEeCCCCceeEEEeCEEEEeecccC
Q 010421 132 VQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 132 ~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+.+. +++..++.+|.||.|+|..|
T Consensus 149 ~~~~-dG~~~~i~ad~VI~AdG~~S 172 (512)
T 3e1t_A 149 YRNT-EGVELMAHARFIVDASGNRT 172 (512)
T ss_dssp EECS-SSCEEEEEEEEEEECCCTTC
T ss_pred EEeC-CCCEEEEEcCEEEECCCcch
Confidence 5443 23345789999999999874
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.9e-09 Score=110.45 Aligned_cols=59 Identities=8% Similarity=0.153 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+...+.+.+++.|+ .++++++|+++... ++.|.|.+.++. ++.+|.||+|+|.
T Consensus 415 ~p~~l~~aL~~~a~~~Gv--~i~~~t~V~~l~~~----------------~~~v~V~t~~G~-----~i~Ad~VVlAtG~ 471 (676)
T 3ps9_A 415 CPAELTRNVLELAQQQGL--QIYYQYQLQNFSRK----------------DDCWLLNFAGDQ-----QATHSVVVLANGH 471 (676)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEEESCCEEEEEEE----------------TTEEEEEETTSC-----EEEESEEEECCGG
T ss_pred CHHHHHHHHHHHHHhCCC--EEEeCCeeeEEEEe----------------CCeEEEEECCCC-----EEECCEEEECCCc
Confidence 346677778888888888 89999999999973 455777665543 7899999999998
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
.+
T Consensus 472 ~s 473 (676)
T 3ps9_A 472 QI 473 (676)
T ss_dssp GG
T ss_pred ch
Confidence 74
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-09 Score=106.41 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=82.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--------------CcCce-eccCCCCccccC-----
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--------------SYNST-KLQSHRSDYEFT----- 61 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--------------~~~~~-~~~~~~~~~~~~----- 61 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+.+++.-... ..+.+ ....+...+.+.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 47999999999999999999 899999999987764310000 00000 000000001100
Q ss_pred --CCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCc
Q 010421 62 --DFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS 139 (511)
Q Consensus 62 --~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (511)
.++.+.. ......+.++.++|.+.+++.++ .++++++|++++. ++ .|++.++.
T Consensus 91 ~~~~~~~~~-~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~-----------------~~--~v~~~~g~--- 145 (379)
T 3alj_A 91 VSKETFNGL-PWRIMTRSHLHDALVNRARALGV--DISVNSEAVAADP-----------------VG--RLTLQTGE--- 145 (379)
T ss_dssp EEEECGGGC-CEEEEEHHHHHHHHHHHHHHTTC--EEESSCCEEEEET-----------------TT--EEEETTSC---
T ss_pred eeeccCCCC-ceEEECHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEe-----------------CC--EEEECCCC---
Confidence 0111000 12234678889999999988888 8999999999975 23 57765543
Q ss_pred eeEEEeCEEEEeecccC
Q 010421 140 IQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~ 156 (511)
++.+|.||.|+|..|
T Consensus 146 --~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 146 --VLEADLIVGADGVGS 160 (379)
T ss_dssp --EEECSEEEECCCTTC
T ss_pred --EEEcCEEEECCCccH
Confidence 789999999999764
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.4e-09 Score=108.56 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=86.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcC------------------------ceec--cCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYN------------------------STKL--QSH 54 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~------------------------~~~~--~~~ 54 (511)
+.+||+|||||++|+++|..| .|++|+|+|+.+..+........| +... ...
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 101 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQD 101 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCC
Confidence 458999999999999999999 899999999975432110000000 0000 000
Q ss_pred CC--ccccCCCCC---CCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE
Q 010421 55 RS--DYEFTDFPW---PNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE 129 (511)
Q Consensus 55 ~~--~~~~~~~~~---~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (511)
.. .+.+..... ... ......+..+.++|.+.+++.++ .++++++|+++... +++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~V~~v~~~---------------~g~~~~ 163 (591)
T 3i3l_A 102 QAPWTFSFAAPKVAPWVFD-HAVQVKREEFDKLLLDEARSRGI--TVHEETPVTDVDLS---------------DPDRVV 163 (591)
T ss_dssp CCCEEEECCCC--CTTCCS-CEEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEECC---------------STTCEE
T ss_pred CccceeecccccccccccC-eeEEEcHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEc---------------CCCEEE
Confidence 00 011111100 000 11235678899999999988888 89999999999872 145678
Q ss_pred EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 130 VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 130 v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
|++.++ +...++.+|.||.|+|..|
T Consensus 164 V~~~~~--G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 164 LTVRRG--GESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp EEEEET--TEEEEEEESEEEECCGGGC
T ss_pred EEEecC--CceEEEEcCEEEECCCCcc
Confidence 888752 3334799999999999875
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=107.85 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=81.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc------C-c-cccC--------CC----------cCceeccCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI------G-G-IWKS--------CS----------YNSTKLQSHR 55 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~------G-G-~w~~--------~~----------~~~~~~~~~~ 55 (511)
.+||+|||||++|+++|..| .|++|+|+|+.+.. + | .+.. .. +.+.......
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 81 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG 81 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECC
Confidence 47999999999999999999 89999999997642 1 1 1110 00 0000000000
Q ss_pred CccccCCCC-CCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe
Q 010421 56 SDYEFTDFP-WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT 134 (511)
Q Consensus 56 ~~~~~~~~~-~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 134 (511)
....+. ++ .............++.+.|.+.+.+.++ .++++++|++++.. +++.+.|++.+
T Consensus 82 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~i~~~~~v~~i~~~---------------~~~~~~v~~~~ 143 (394)
T 1k0i_A 82 QRRRID-LKRLSGGKTVTVYGQTEVTRDLMEAREACGA--TTVYQAAEVRLHDL---------------QGERPYVTFER 143 (394)
T ss_dssp EEEEEC-HHHHHTSCCEEECCHHHHHHHHHHHHHHTTC--EEESSCEEEEEECT---------------TSSSCEEEEEE
T ss_pred ceEEec-cccccCCCceEEechHHHHHHHHHHHHhcCC--eEEeceeEEEEEEe---------------cCCceEEEEec
Confidence 000000 00 0000011223567777888887777777 89999999999862 13457787733
Q ss_pred CCCCceeEEEeCEEEEeecccC
Q 010421 135 HNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 135 ~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
. ++..++.+|.||.|+|.+|
T Consensus 144 ~--g~~~~~~a~~vV~AdG~~S 163 (394)
T 1k0i_A 144 D--GERLRLDCDYIAGCDGFHG 163 (394)
T ss_dssp T--TEEEEEECSEEEECCCTTC
T ss_pred C--CcEEEEEeCEEEECCCCCc
Confidence 2 3334689999999999875
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.2e-09 Score=108.43 Aligned_cols=130 Identities=20% Similarity=0.259 Sum_probs=83.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC-----CcCce------eccC---CCCcc----cc---
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC-----SYNST------KLQS---HRSDY----EF--- 60 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~-----~~~~~------~~~~---~~~~~----~~--- 60 (511)
.+||+|||||++|+++|..| .|.+|+|+|+.+.+|+..... .+... .-.. +.... .+
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE 105 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence 47999999999999999999 899999999988777532110 00000 0000 00000 00
Q ss_pred --------CCCCCCCC-CCCCCC---ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-
Q 010421 61 --------TDFPWPNR-DDPGFP---SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV- 127 (511)
Q Consensus 61 --------~~~~~~~~-~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~- 127 (511)
...++... ....|+ ....+.+.|.+.+++.++ .++++++|+++... ++.
T Consensus 106 ~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV--~i~~~~~V~~i~~~----------------~~~v 167 (447)
T 2i0z_A 106 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV--KIRTNTPVETIEYE----------------NGQT 167 (447)
T ss_dssp HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEE----------------TTEE
T ss_pred HHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEec----------------CCcE
Confidence 00111000 001122 467888888888888888 89999999999873 333
Q ss_pred eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
|.|.+.++. ++.+|.||+|||.++
T Consensus 168 ~~V~~~~G~-----~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 168 KAVILQTGE-----VLETNHVVIAVGGKS 191 (447)
T ss_dssp EEEEETTCC-----EEECSCEEECCCCSS
T ss_pred EEEEECCCC-----EEECCEEEECCCCCc
Confidence 777765442 689999999999873
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.5e-09 Score=104.69 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeee---EEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEe
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNS---KVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVC 151 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~---~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlA 151 (511)
...+...+.+.+++.++ .+++++ +|+++... ++.++ |.+.++. ++.+|.||+|
T Consensus 160 ~~~~~~~L~~~a~~~Gv--~i~~~t~~~~V~~i~~~----------------~~~v~gV~t~~G~-----~i~Ad~VV~A 216 (438)
T 3dje_A 160 ARNALVAAAREAQRMGV--KFVTGTPQGRVVTLIFE----------------NNDVKGAVTADGK-----IWRAERTFLC 216 (438)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEESTTTTCEEEEEEE----------------TTEEEEEEETTTE-----EEECSEEEEC
T ss_pred HHHHHHHHHHHHHhcCC--EEEeCCcCceEEEEEec----------------CCeEEEEEECCCC-----EEECCEEEEC
Confidence 45777888888888888 899999 99999873 45566 6665543 7899999999
Q ss_pred ecccC
Q 010421 152 TGKYG 156 (511)
Q Consensus 152 tG~~~ 156 (511)
+|.++
T Consensus 217 tG~~s 221 (438)
T 3dje_A 217 AGASA 221 (438)
T ss_dssp CGGGG
T ss_pred CCCCh
Confidence 99874
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=101.23 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
....+...+.+.+++.++ .++++++|++++.. ++.|. |.+.++ ++.+|.||+|+|
T Consensus 147 ~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~i~~~----------------~~~v~gv~~~~g------~i~a~~VV~A~G 202 (382)
T 1y56_B 147 DPFEATTAFAVKAKEYGA--KLLEYTEVKGFLIE----------------NNEIKGVKTNKG------IIKTGIVVNATN 202 (382)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEES----------------SSBEEEEEETTE------EEECSEEEECCG
T ss_pred CHHHHHHHHHHHHHHCCC--EEECCceEEEEEEE----------------CCEEEEEEECCc------EEECCEEEECcc
Confidence 456777888888888888 89999999999873 44565 554322 689999999999
Q ss_pred ccC
Q 010421 154 KYG 156 (511)
Q Consensus 154 ~~~ 156 (511)
..+
T Consensus 203 ~~s 205 (382)
T 1y56_B 203 AWA 205 (382)
T ss_dssp GGH
T ss_pred hhH
Confidence 863
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=107.80 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=85.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--c------CCCcEEEcCCCCcCccccC-C-C--------cCcee-----cc--------
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R------HHNPVVFEASDSIGGIWKS-C-S--------YNSTK-----LQ-------- 52 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~------g~~v~v~e~~~~~GG~w~~-~-~--------~~~~~-----~~-------- 52 (511)
.+||+|||||++|+++|..| . |++|+|+||.+.+|+.... . . ++... +.
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~ 114 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 114 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence 47999999999999999999 6 9999999998887753211 0 0 00000 00
Q ss_pred ---CCCCccccCCCCC--CCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 53 ---SHRSDYEFTDFPW--PNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 53 ---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
.......++..|. ..........+.++.++|.+.+++.++ .++++++|+++...+ ++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~v~~l~~~~---------------~g~ 177 (584)
T 2gmh_A 115 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGV--EVYPGYAAAEILFHE---------------DGS 177 (584)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEEECT---------------TSS
T ss_pred eeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcC---------------CCC
Confidence 0000111111110 000012234678899999999988888 899999999998731 333
Q ss_pred e-EEEEEeC---CCCce-------eEEEeCEEEEeecccC
Q 010421 128 W-EVAVQTH---NSNSI-------QRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~-~v~~~~~---~~~~~-------~~~~~d~vVlAtG~~~ 156 (511)
. .|.+.+. .+++. .++.+|.||+|+|.+|
T Consensus 178 V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 178 VKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp EEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred EEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence 3 2555430 11211 3789999999999874
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.4e-09 Score=104.86 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+...+.+.+++.|. .++++++|+++... ++.|.|++.++ ++.+|+||+|+|.
T Consensus 152 ~~~~~~~~l~~~a~~~Gv--~i~~~~~V~~i~~~----------------~~~~~V~t~~g------~i~a~~VV~A~G~ 207 (381)
T 3nyc_A 152 DTDALHQGYLRGIRRNQG--QVLCNHEALEIRRV----------------DGAWEVRCDAG------SYRAAVLVNAAGA 207 (381)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEESSCCCCEEEEE----------------TTEEEEECSSE------EEEESEEEECCGG
T ss_pred CHHHHHHHHHHHHHHCCC--EEEcCCEEEEEEEe----------------CCeEEEEeCCC------EEEcCEEEECCCh
Confidence 346677777778888888 89999999999873 34477765443 7899999999998
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
++
T Consensus 208 ~s 209 (381)
T 3nyc_A 208 WC 209 (381)
T ss_dssp GH
T ss_pred hH
Confidence 63
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=101.53 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
...+.+.+.+.+++.++ .++++++|++++.. ++.|.|.+.++ ++.+|.||+|+|..
T Consensus 148 ~~~l~~~l~~~~~~~G~--~i~~~~~V~~i~~~----------------~~~~~v~~~~g------~~~a~~vV~a~G~~ 203 (372)
T 2uzz_A 148 SELAIKTWIQLAKEAGC--AQLFNCPVTAIRHD----------------DDGVTIETADG------EYQAKKAIVCAGTW 203 (372)
T ss_dssp HHHHHHHHHHHHHHTTC--EEECSCCEEEEEEC----------------SSSEEEEESSC------EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCC--EEEcCCEEEEEEEc----------------CCEEEEEECCC------eEEcCEEEEcCCcc
Confidence 34677778788888888 88999999999873 34576655433 58999999999987
Q ss_pred C
Q 010421 156 G 156 (511)
Q Consensus 156 ~ 156 (511)
+
T Consensus 204 s 204 (372)
T 2uzz_A 204 V 204 (372)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.3e-09 Score=102.66 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 74 PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
....++.+.+.+.+++.++ .++++++|+++... ++.|.|.+.++ ++.+|.||+|+|
T Consensus 161 ~~~~~~~~~l~~~~~~~g~--~i~~~~~v~~i~~~----------------~~~~~v~~~~g------~~~a~~vV~A~G 216 (382)
T 1ryi_A 161 VEPYFVCKAYVKAAKMLGA--EIFEHTPVLHVERD----------------GEALFIKTPSG------DVWANHVVVASG 216 (382)
T ss_dssp CCHHHHHHHHHHHHHHTTC--EEETTCCCCEEECS----------------SSSEEEEETTE------EEEEEEEEECCG
T ss_pred EcHHHHHHHHHHHHHHCCC--EEEcCCcEEEEEEE----------------CCEEEEEcCCc------eEEcCEEEECCC
Confidence 4567788888888888888 88999999999862 45565654322 689999999999
Q ss_pred ccC
Q 010421 154 KYG 156 (511)
Q Consensus 154 ~~~ 156 (511)
..+
T Consensus 217 ~~s 219 (382)
T 1ryi_A 217 VWS 219 (382)
T ss_dssp GGT
T ss_pred hhH
Confidence 863
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-08 Score=104.99 Aligned_cols=134 Identities=15% Similarity=0.164 Sum_probs=85.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceec------------cCCCCc------------
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKL------------QSHRSD------------ 57 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~------------~~~~~~------------ 57 (511)
.+||+|||||++|+++|..| .|.+|+|+|+.+.+||..... -.++.. +++...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a-~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~ 204 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLA-AGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN 204 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGC-CSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhc-CceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence 47999999999999999999 899999999999888754321 000000 000000
Q ss_pred ------------------cccCCCCCCC-----C--CCC------CCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEE
Q 010421 58 ------------------YEFTDFPWPN-----R--DDP------GFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVR 106 (511)
Q Consensus 58 ------------------~~~~~~~~~~-----~--~~~------~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~ 106 (511)
+.-...++.. . ... ....+..+.+.|.+.+++.++ .++++++|+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv--~i~~~~~v~~l~ 282 (571)
T 1y0p_A 205 DPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNI--DLRMNTRGIEVL 282 (571)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTC--EEESSEEEEEEE
T ss_pred CHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCC--EEEeCCEeeEeE
Confidence 0000111110 0 000 013457888899999988888 899999999998
Q ss_pred EcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 107 FTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
..+ +++ +-|.+.+. +++..++.+|.||+|||.++
T Consensus 283 ~~~---------------~g~v~Gv~~~~~-~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 283 KDD---------------KGTVKGILVKGM-YKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp ECT---------------TSCEEEEEEEET-TTEEEEEECSEEEECCCCCT
T ss_pred EcC---------------CCeEEEEEEEeC-CCcEEEEECCeEEEeCCCcc
Confidence 731 233 23555542 24445789999999999874
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-08 Score=104.25 Aligned_cols=64 Identities=11% Similarity=-0.024 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
...+...+...+.+.|. .++++++|+++...+ ++.|.|.+.+..+++..++.+|.||+|+|.+
T Consensus 169 ~~~l~~~L~~~a~~~G~--~i~~~~~V~~l~~~~---------------g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~ 231 (561)
T 3da1_A 169 DARLTLEIMKEAVARGA--VALNYMKVESFIYDQ---------------GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW 231 (561)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEESEEEEEEEEET---------------TEEEEEEEEETTTCCEEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcC---------------CeEEEEEEEEcCCCceEEEECCEEEECCCcc
Confidence 45566667777778888 899999999999831 3346688887555555689999999999987
Q ss_pred C
Q 010421 156 G 156 (511)
Q Consensus 156 ~ 156 (511)
+
T Consensus 232 s 232 (561)
T 3da1_A 232 V 232 (561)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-08 Score=104.06 Aligned_cols=135 Identities=23% Similarity=0.265 Sum_probs=84.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--Cc--Ccee------c-cC-----------------
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--SY--NSTK------L-QS----------------- 53 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--~~--~~~~------~-~~----------------- 53 (511)
.+||+|||||++|+++|..| .|.+|+|+|+.+.+||..... .. +... . ++
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~ 200 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND 200 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 46999999999999999999 899999999998887643220 00 0000 0 00
Q ss_pred CCCc-------------cccCCCCC-----------CCCC--CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEE
Q 010421 54 HRSD-------------YEFTDFPW-----------PNRD--DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRF 107 (511)
Q Consensus 54 ~~~~-------------~~~~~~~~-----------~~~~--~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 107 (511)
+... +.-...++ +... .....++..+.+.|.+.+++.++ .++++++|+++..
T Consensus 201 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv--~i~~~~~v~~l~~ 278 (566)
T 1qo8_A 201 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGI--DTRLNSRVVKLVV 278 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTC--CEECSEEEEEEEE
T ss_pred HHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEE
Confidence 0000 00001111 1000 01113467888899999988888 8999999999987
Q ss_pred cCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 108 TGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.+ +++ +-|.+.+. +++..++.+|.||+|||.++
T Consensus 279 ~~---------------~g~v~Gv~~~~~-~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 279 ND---------------DHSVVGAVVHGK-HTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp CT---------------TSBEEEEEEEET-TTEEEEEEEEEEEECCCCCT
T ss_pred CC---------------CCcEEEEEEEeC-CCcEEEEEcCEEEEecCCcc
Confidence 31 143 23555542 24444689999999999874
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=101.03 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=32.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
|++.+||+|||||++|+++|..| .|++|+|+|+.+..
T Consensus 1 M~~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~ 39 (397)
T 2oln_A 1 MTESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFF 39 (397)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 66668999999999999999999 89999999997654
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.8e-09 Score=107.43 Aligned_cols=166 Identities=12% Similarity=0.134 Sum_probs=98.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC-CcCccccCCCcCceeccCC----------CCc---------cccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD-SIGGIWKSCSYNSTKLQSH----------RSD---------YEFT 61 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~~~----------~~~---------~~~~ 61 (511)
.+||+|||||++|+.||..| .|.+|+|+|++. .+|+.. ..|....... ... ..|.
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~---Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~ 103 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMS---CNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFK 103 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCC---SCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcC---ccccccccchHHHHHHHHHhhhHHHHHhhhccccee
Confidence 47999999999999999999 899999999974 444311 1111100000 000 0010
Q ss_pred CCCC---CCCC-CCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeC
Q 010421 62 DFPW---PNRD-DPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTH 135 (511)
Q Consensus 62 ~~~~---~~~~-~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 135 (511)
.... +... ......+..+.+.+.+.+++. ++ .+ ++++|+++... ++. +.|.+.++
T Consensus 104 ~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GV--eI-~~~~Vt~L~~e----------------~g~V~GV~t~dG 164 (637)
T 2zxi_A 104 MLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENL--YI-KQEEVVDIIVK----------------NNQVVGVRTNLG 164 (637)
T ss_dssp EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTE--EE-EESCEEEEEES----------------SSBEEEEEETTS
T ss_pred ecccccCccccchhhhCCHHHHHHHHHHHHHhCCCC--EE-EEeEEEEEEec----------------CCEEEEEEECCC
Confidence 0000 0000 001124567888888888774 66 56 68899998862 233 34555444
Q ss_pred CCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHH
Q 010421 136 NSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKE 215 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~ 215 (511)
. .+.+|.||+|||.+ ++.+.++ |...+ .+.+ + |+.++.+++..
T Consensus 165 ~-----~i~AdaVVLATG~~---s~~~~~~---G~~~~----------------------~~Gr---~-G~~~A~~la~~ 207 (637)
T 2zxi_A 165 V-----EYKTKAVVVTTGTF---LNGVIYI---GDKMI----------------------PGGR---L-GEPRSEGLSDF 207 (637)
T ss_dssp C-----EEECSEEEECCTTC---BTCEEEE---TTEEE----------------------ECSB---T-TBCCBCTHHHH
T ss_pred c-----EEEeCEEEEccCCC---ccCceec---cceec----------------------CCCC---C-CchhHHHHHHH
Confidence 3 79999999999965 3444444 43321 1122 2 35788999999
Q ss_pred HHHhcCCCCCCcEEEEEe
Q 010421 216 CAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 216 l~~~~~~~~~~~Vtl~~R 233 (511)
|.+.+.. ++.+.+
T Consensus 208 L~~lG~~-----v~~l~t 220 (637)
T 2zxi_A 208 YRRFDFP-----LIRFKT 220 (637)
T ss_dssp HHHTTCC-----CEEEEE
T ss_pred HHhcCCc-----eEEecC
Confidence 9988764 666654
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-08 Score=98.99 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
...+...+.+.+++.++ .++++++|++++.. ++.|.|.+.++ ++.+|.||+|+|..
T Consensus 149 ~~~~~~~l~~~~~~~Gv--~i~~~~~v~~i~~~----------------~~~~~v~~~~g------~~~a~~vV~A~G~~ 204 (389)
T 2gf3_A 149 SENCIRAYRELAEARGA--KVLTHTRVEDFDIS----------------PDSVKIETANG------SYTADKLIVSMGAW 204 (389)
T ss_dssp HHHHHHHHHHHHHHTTC--EEECSCCEEEEEEC----------------SSCEEEEETTE------EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCC--EEEcCcEEEEEEec----------------CCeEEEEeCCC------EEEeCEEEEecCcc
Confidence 36777888888888888 89999999999873 34566654322 68999999999976
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-07 Score=102.73 Aligned_cols=60 Identities=8% Similarity=0.195 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+...+.+.+++.|+ .++++++|+++... ++.|.|.+.++. .++.+|.||+|+|.
T Consensus 410 ~p~~l~~aL~~~a~~~Gv--~i~~~t~V~~l~~~----------------~~~v~V~t~~G~----~~i~Ad~VVlAtG~ 467 (689)
T 3pvc_A 410 CPSDLTHALMMLAQQNGM--TCHYQHELQRLKRI----------------DSQWQLTFGQSQ----AAKHHATVILATGH 467 (689)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEEESCCEEEEEEC----------------SSSEEEEEC-CC----CCEEESEEEECCGG
T ss_pred CHHHHHHHHHHHHHhCCC--EEEeCCeEeEEEEe----------------CCeEEEEeCCCc----EEEECCEEEECCCc
Confidence 345677777777888888 89999999999983 445877765542 14789999999998
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
.+
T Consensus 468 ~s 469 (689)
T 3pvc_A 468 RL 469 (689)
T ss_dssp GT
T ss_pred ch
Confidence 74
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.2e-08 Score=102.84 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=86.9
Q ss_pred CCeEEEECCCHHHHHHHHhc-c--CCCcEEEcCCCCcCccccCC------------------------CcCceeccCC--
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-R--HHNPVVFEASDSIGGIWKSC------------------------SYNSTKLQSH-- 54 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~--g~~v~v~e~~~~~GG~w~~~------------------------~~~~~~~~~~-- 54 (511)
.+||+|||||++||++|..| . |++|+|+|+.+.++...... .........+
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 111 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDP 111 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECT
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCC
Confidence 47999999999999999999 5 89999999987654322110 0000000000
Q ss_pred ---CCccc---cCCCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 55 ---RSDYE---FTDFPWP-NRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 55 ---~~~~~---~~~~~~~-~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
..... +...... ............+.++|.+.+++.+..-.++++++|++++...+. +...
T Consensus 112 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~------------~~~~ 179 (639)
T 2dkh_A 112 GQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGA------------ADYP 179 (639)
T ss_dssp TSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTC------------SSCC
T ss_pred CCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCC------------CcCC
Confidence 00000 1100000 000112356788999999999888643368999999999983110 0235
Q ss_pred eEEEEEeC---CCCceeEEEeCEEEEeecccC
Q 010421 128 WEVAVQTH---NSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 128 ~~v~~~~~---~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++|++++. .++...++.+|+||.|+|.+|
T Consensus 180 v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 180 VTVTLERCDAAHAGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp EEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred EEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence 77877751 123344799999999999885
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-08 Score=104.20 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=97.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC-CcCccccCCCcCceecc----------CCCCc---------ccc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD-SIGGIWKSCSYNSTKLQ----------SHRSD---------YEF 60 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~----------~~~~~---------~~~ 60 (511)
..+||+|||||++|++||..| .|.+|+|+|++. .+|+.+.. |..... .-... ..|
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~---ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f 96 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCN---PAIGGVAKGQITREIDALGGEMGKAIDATGIQF 96 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC---SEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccc---cchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence 358999999999999999999 899999999975 45553321 111000 00000 011
Q ss_pred CCCC---CCCCC-CCCCCChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceE-EEEEe
Q 010421 61 TDFP---WPNRD-DPGFPSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWE-VAVQT 134 (511)
Q Consensus 61 ~~~~---~~~~~-~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~ 134 (511)
.... -+... .........+...+.+.++++ ++ .+ ++.+|+.+... ++... |.+.+
T Consensus 97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV--~I-~~~~V~~L~~d----------------~g~V~GV~t~~ 157 (641)
T 3cp8_A 97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNI--DL-LQDTVIGVSAN----------------SGKFSSVTVRS 157 (641)
T ss_dssp EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTE--EE-EECCEEEEEEE----------------TTEEEEEEETT
T ss_pred hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCC--EE-EeeEEEEEEec----------------CCEEEEEEECC
Confidence 0000 00000 001234567788888888775 66 45 56789888762 33333 54444
Q ss_pred CCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHH
Q 010421 135 HNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAK 214 (511)
Q Consensus 135 ~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~ 214 (511)
+. .+.||.||+|||.++ +.+.++ |...+ .+.+++ | +.++++++.
T Consensus 158 G~-----~i~Ad~VVLATG~~s---~~~i~~---G~~~~----------------------~~g~~v--G-~~~a~~la~ 201 (641)
T 3cp8_A 158 GR-----AIQAKAAILACGTFL---NGLIHI---GMDHF----------------------PGGRST--A-EPPVEGLTE 201 (641)
T ss_dssp SC-----EEEEEEEEECCTTCB---TCEEEE---TTEEE----------------------ECSSST--T-SCCBCSHHH
T ss_pred Cc-----EEEeCEEEECcCCCC---Ccccee---eeeee----------------------cccccc--C-CchhhhhHH
Confidence 32 799999999999652 222222 22111 111221 3 577888998
Q ss_pred HHHHhcCCCCCCcEEEEEe
Q 010421 215 ECAESNQGPEGQPCTMIVR 233 (511)
Q Consensus 215 ~l~~~~~~~~~~~Vtl~~R 233 (511)
.|.+.+.. |..+..
T Consensus 202 ~L~~~G~k-----v~~l~t 215 (641)
T 3cp8_A 202 SLASLGFS-----FGRLKT 215 (641)
T ss_dssp HHHHTTCC-----EEEEEE
T ss_pred HHHhCCce-----EEeecC
Confidence 89888764 766543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-08 Score=99.34 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
.+|+||||||+||++|..| .|++|+||||.+.+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4899999999999999999 99999999997654
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-08 Score=90.93 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=29.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+++|..|++.+.+ |+++.+..
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~-----v~lie~~~ 36 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVR-----VGLLTQSL 36 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC-----EEEEESCG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC-----EEEEecCC
Confidence 4799999999999999999998765 99999873
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-07 Score=98.26 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+...+...+.+.|. .++++++|+++... ++.|.|.+.+..+++..++.+|.||+|+|.
T Consensus 147 ~~~~l~~~l~~~a~~~Gv--~i~~~~~V~~l~~~----------------~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~ 208 (501)
T 2qcu_A 147 DDARLVLANAQMVVRKGG--EVLTRTRATSARRE----------------NGLWIVEAEDIDTGKKYSWQARGLVNATGP 208 (501)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSEEEEEEEEE----------------TTEEEEEEEETTTCCEEEEEESCEEECCGG
T ss_pred cHHHHHHHHHHHHHHcCC--EEEcCcEEEEEEEe----------------CCEEEEEEEECCCCCEEEEECCEEEECCCh
Confidence 345667777777778888 89999999999873 356788887643444457899999999998
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
++
T Consensus 209 ~s 210 (501)
T 2qcu_A 209 WV 210 (501)
T ss_dssp GH
T ss_pred hH
Confidence 74
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-07 Score=97.38 Aligned_cols=134 Identities=18% Similarity=0.159 Sum_probs=84.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCcee-----------c-cCCCCcc-----------
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTK-----------L-QSHRSDY----------- 58 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~-----------~-~~~~~~~----------- 58 (511)
.+||+|||+|++|+++|..| .|.+|+|+|+.+.+||..... -.++. . +++...+
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a-~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~ 204 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLA-AGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN 204 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGC-CSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhh-CCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence 46899999999999999999 799999999999888754321 00000 0 0000000
Q ss_pred -------------------ccCCCCCC-----CC--CCC------CCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEE
Q 010421 59 -------------------EFTDFPWP-----NR--DDP------GFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVR 106 (511)
Q Consensus 59 -------------------~~~~~~~~-----~~--~~~------~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~ 106 (511)
.-...++. .. ... ....+..+...|.+.+++.++ .++++++|+++.
T Consensus 205 ~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv--~i~~~t~v~~l~ 282 (572)
T 1d4d_A 205 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGT--DIRLNSRVVRIL 282 (572)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTC--EEESSEEEEEEE
T ss_pred CHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCC--eEEecCEEEEEE
Confidence 00011111 00 000 112367888899999988888 899999999998
Q ss_pred EcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 107 FTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
..+ +++ +-|.+.+. +++..++.+|.||+|||.++
T Consensus 283 ~~~---------------~g~v~GV~~~~~-~G~~~~i~A~~VVlAtGg~~ 317 (572)
T 1d4d_A 283 EDA---------------SGKVTGVLVKGE-YTGYYVIKADAVVIAAGGFA 317 (572)
T ss_dssp EC-----------------CCEEEEEEEET-TTEEEEEECSEEEECCCCCT
T ss_pred ECC---------------CCeEEEEEEEeC-CCcEEEEEcCEEEEeCCCCc
Confidence 621 133 33555542 24445689999999999763
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-08 Score=97.77 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=60.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCc-cccCC-CcCceeccCCCCcccc--CCCCCCCCC-CCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGG-IWKSC-SYNSTKLQSHRSDYEF--TDFPWPNRD-DPGFP 74 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG-~w~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~ 74 (511)
.+||+|||||++|+++|..| . |++|+|+|+...+|| .|... .+....+. +.....+ ...++.... .....
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~-~~~~~~L~~~Gv~~~~~G~~~~~~ 157 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMR-KPADVFLDEVGVPYEDEGDYVVVK 157 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEE-TTTHHHHHHHTCCCEECSSEEEES
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcc-hHHHHHHHHcCCcccccCCeEEEe
Confidence 47999999999999999999 4 999999999988774 45331 22222221 1111000 111221100 00011
Q ss_pred ChHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEc
Q 010421 75 SYTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFT 108 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~ 108 (511)
...++.+.|...+.. .++ .++++++|+++...
T Consensus 158 ~~~d~~~~L~~~a~~~~gV--~i~~~~~V~dLi~~ 190 (344)
T 3jsk_A 158 HAALFTSTVLSKVLQRPNV--KLFNATTVEDLITR 190 (344)
T ss_dssp CHHHHHHHHHHHHHTCTTE--EEEETEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHhCCCC--EEEeCCEEEEEEec
Confidence 245555666666655 366 78889999988763
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=93.95 Aligned_cols=59 Identities=12% Similarity=-0.014 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+...+.+.+++.++ .++++++|+++...+ +..|.|.+.++ ++.+|.||+|+|.
T Consensus 172 ~~~~~~~~l~~~~~~~g~--~i~~~~~v~~i~~~~---------------~~~~~v~~~~g------~~~a~~vV~a~G~ 228 (405)
T 2gag_B 172 KHDHVAWAFARKANEMGV--DIIQNCEVTGFIKDG---------------EKVTGVKTTRG------TIHAGKVALAGAG 228 (405)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEESS---------------SBEEEEEETTC------CEEEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHCCC--EEEcCCeEEEEEEeC---------------CEEEEEEeCCc------eEECCEEEECCch
Confidence 455777888888888888 899999999998731 33355655332 6899999999998
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
.+
T Consensus 229 ~s 230 (405)
T 2gag_B 229 HS 230 (405)
T ss_dssp GH
T ss_pred hH
Confidence 63
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-08 Score=93.65 Aligned_cols=45 Identities=36% Similarity=0.530 Sum_probs=39.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNS 48 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~ 48 (511)
.+||+||||||+||+||..| .|++|+||||++.+||.+.....++
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~ 48 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDA 48 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCC
Confidence 48999999999999999999 9999999999999999876533333
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-07 Score=97.85 Aligned_cols=41 Identities=34% Similarity=0.519 Sum_probs=34.8
Q ss_pred CC-CCCeEEEECCCHHHHHHHHhc--cC------CCcEEEcCCCCcCccc
Q 010421 1 MA-NYSKIAIIGAGVSGLAAVKQL--RH------HNPVVFEASDSIGGIW 41 (511)
Q Consensus 1 m~-~~~~v~IIGaG~aGl~aa~~l--~g------~~v~v~e~~~~~GG~w 41 (511)
|+ +.+||+|||||++||+||..| .| ++|+|+|+++.+||..
T Consensus 1 M~~~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~ 50 (470)
T 3i6d_A 1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKI 50 (470)
T ss_dssp ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTC
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceE
Confidence 54 347999999999999999999 77 8999999999998743
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.6e-07 Score=94.01 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=34.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
.+||+|||||++|+++|..| .|.+|+|+||.+.+||.
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~ 79 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA 79 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence 47999999999999999999 89999999999888764
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-07 Score=103.55 Aligned_cols=36 Identities=36% Similarity=0.537 Sum_probs=31.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDS 36 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~ 36 (511)
|++.+||+|||||++|+++|.+| .|. +|+|+|++..
T Consensus 1 m~~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~ 39 (830)
T 1pj5_A 1 MASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL 39 (830)
T ss_dssp ---CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 66778999999999999999999 888 9999999875
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-07 Score=94.00 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=35.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
+||+|||||++|++||..| .|++|+|+|+++.+||...
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 41 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAY 41 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeec
Confidence 6999999999999999999 8999999999999998654
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.1e-08 Score=97.25 Aligned_cols=39 Identities=36% Similarity=0.589 Sum_probs=35.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+||+|||||++||++|..| .|.+|+|+|+++.+||....
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTN 41 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEE
Confidence 4899999999999999999 89999999999999986543
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.7e-07 Score=95.63 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=85.4
Q ss_pred CCeEEEECCCHHHHHHHHhc-c------CCCcEEEcCCCCcCccccC------------------------CCcCceecc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-R------HHNPVVFEASDSIGGIWKS------------------------CSYNSTKLQ 52 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~------g~~v~v~e~~~~~GG~w~~------------------------~~~~~~~~~ 52 (511)
.+||+||||||+||++|..| . |++|+|||+.+.....-.. ..+......
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~ 87 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY 87 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence 46899999999999999999 6 8999999997653211000 001111110
Q ss_pred CCC---Ccc---ccCCCCCC-CCCCCCCCChHHHHHHHHHHHHhcC---CCCceEeeeEEEEEEEcCCCCcccCCCCCCC
Q 010421 53 SHR---SDY---EFTDFPWP-NRDDPGFPSYTEILDYLESYAKHFD---VFKCVRFNSKVVEVRFTGSLETTDSGGNLLP 122 (511)
Q Consensus 53 ~~~---~~~---~~~~~~~~-~~~~~~~~~~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~ 122 (511)
.+. ... .+.+.... ............+.++|.+.+++.+ + .++++++|++++...... . .
T Consensus 88 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v--~v~~g~~v~~~~~d~~~~--~-----~- 157 (665)
T 1pn0_A 88 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRI--KVERPLIPEKMEIDSSKA--E-----D- 157 (665)
T ss_dssp EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSS--CEECSEEEEEEEECGGGT--T-----C-
T ss_pred eCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCce--EEEeCCEEEEEEecCccc--c-----c-
Confidence 000 000 01110000 0001223567888899998888876 5 799999999998731000 0 0
Q ss_pred CCCCceEEEEEeC---------------------------------------CCCceeEEEeCEEEEeecccC
Q 010421 123 AGHPVWEVAVQTH---------------------------------------NSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 123 ~~~~~~~v~~~~~---------------------------------------~~~~~~~~~~d~vVlAtG~~~ 156 (511)
......+|++.+. .++...++.+|+||-|.|.+|
T Consensus 158 ~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S 230 (665)
T 1pn0_A 158 PEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHS 230 (665)
T ss_dssp TTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTC
T ss_pred CCCCCEEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCC
Confidence 0023467776652 224345799999999999986
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-07 Score=94.92 Aligned_cols=38 Identities=37% Similarity=0.578 Sum_probs=34.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
+||+|||||++||+||..| .|.+|+|+|+++.+||...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT 40 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCcee
Confidence 4899999999999999999 8999999999999988654
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-07 Score=93.75 Aligned_cols=95 Identities=20% Similarity=0.186 Sum_probs=73.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|++|+.+|..| .|.+|+++|+.+.+. +. ...++.+
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l--------------------------------~~--~~~~~~~ 212 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL--------------------------------PT--MDLEVSR 212 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999976531 10 1256777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+.+++.++ .++++++|++++.. ++.+.+.+.++. ++.+|.||+|+|..
T Consensus 213 ~l~~~l~~~Gv--~i~~~~~V~~i~~~----------------~~~v~v~~~~g~-----~i~~D~vv~A~G~~ 263 (455)
T 2yqu_A 213 AAERVFKKQGL--TIRTGVRVTAVVPE----------------AKGARVELEGGE-----VLEADRVLVAVGRR 263 (455)
T ss_dssp HHHHHHHHHTC--EEECSCCEEEEEEE----------------TTEEEEEETTSC-----EEEESEEEECSCEE
T ss_pred HHHHHHHHCCC--EEEECCEEEEEEEe----------------CCEEEEEECCCe-----EEEcCEEEECcCCC
Confidence 78888888888 89999999999873 333455554432 78999999999954
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=94.93 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~ 37 (511)
.+||+|||||++|+++|..| . |++|+|+|+....
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~ 73 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP 73 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 37999999999999999999 6 9999999997543
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=97.75 Aligned_cols=59 Identities=19% Similarity=0.356 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
.+.++..+|.+.+++.++ .++++ +|+++.... ++ .+.|.+.++. ++.+|.||.|+|
T Consensus 163 ~~~~l~~~L~~~a~~~gv--~~~~~-~v~~i~~~~---------------~g~~~~v~~~~g~-----~i~ad~vV~A~G 219 (538)
T 2aqj_A 163 DAHLVADFLKRWAVERGV--NRVVD-EVVDVRLNN---------------RGYISNLLTKEGR-----TLEADLFIDCSG 219 (538)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEEEC-CEEEEEECT---------------TSCEEEEEETTSC-----EECCSEEEECCG
T ss_pred eHHHHHHHHHHHHHHCCC--EEEEe-eEeEEEEcC---------------CCcEEEEEECCCc-----EEEeCEEEECCC
Confidence 457888899999988888 78888 899998721 22 2455554432 789999999999
Q ss_pred ccC
Q 010421 154 KYG 156 (511)
Q Consensus 154 ~~~ 156 (511)
..|
T Consensus 220 ~~s 222 (538)
T 2aqj_A 220 MRG 222 (538)
T ss_dssp GGC
T ss_pred Cch
Confidence 875
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-07 Score=87.66 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=61.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcC-ccccCC-CcCceeccCCC-CccccCCCCCCCCCCCC--CC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIG-GIWKSC-SYNSTKLQSHR-SDYEFTDFPWPNRDDPG--FP 74 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~G-G~w~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~ 74 (511)
.+||+|||||++|+++|..| . |++|+|+|+.+.+| |.|... .+....+.... ..+.-...++... ... ..
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~-g~~~~~~ 143 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDE-GDYVVVK 143 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEEC-SSEEEES
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccC-CCeEEEc
Confidence 35999999999999999999 5 99999999998887 455321 12222111100 0000111122111 011 11
Q ss_pred ChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEc
Q 010421 75 SYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFT 108 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~ 108 (511)
...++...+.+.+... ++ .++.+++|+++...
T Consensus 144 ~~~~~~~~L~~~a~~~~GV--~i~~~~~V~~Ll~~ 176 (326)
T 2gjc_A 144 HAALFISTVLSKVLQLPNV--KLFNATCVEDLVTR 176 (326)
T ss_dssp CHHHHHHHHHHHHHTSTTE--EEETTEEEEEEEEC
T ss_pred chHHHHHHHHHHHHHhcCc--EEEecceeeeeeec
Confidence 3456666666666554 66 77888999999873
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.9e-07 Score=92.66 Aligned_cols=63 Identities=10% Similarity=0.084 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
..+...+...+.+.|. .+.++++|+++...+ +..|.|.+.+..+++..++.+|.||+|+|.++
T Consensus 188 ~~l~~~l~~~a~~~Ga--~i~~~t~V~~l~~~~---------------~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 188 ARLVIDNIKKAAEDGA--YLVSKMKAVGFLYEG---------------DQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHHHHHHHTTC--EEESSEEEEEEEEET---------------TEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCC--eEEeccEEEEEEEeC---------------CEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 3444445566677787 889999999998731 33466777764334444689999999999874
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=88.75 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=79.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+.. . ...++.+
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------~--~~~~~~~ 228 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA--------------------------------S--MDGEVAK 228 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS--------------------------------S--SCHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc--------------------------------c--cCHHHHH
Confidence 46899999999999999999 8999999999865421 1 1256778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|++++... .++.+.|.+.+..++...++.+|.||+|+|. .|+.
T Consensus 229 ~l~~~l~~~gv--~i~~~~~v~~i~~~~--------------~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~---~p~~ 289 (478)
T 1v59_A 229 ATQKFLKKQGL--DFKLSTKVISAKRND--------------DKNVVEIVVEDTKTNKQENLEAEVLLVAVGR---RPYI 289 (478)
T ss_dssp HHHHHHHHTTC--EEECSEEEEEEEEET--------------TTTEEEEEEEETTTTEEEEEEESEEEECSCE---EECC
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEec--------------CCCeEEEEEEEcCCCCceEEECCEEEECCCC---CcCC
Confidence 88888888899 899999999998620 0334567666322222337899999999995 4555
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 290 ~ 290 (478)
T 1v59_A 290 A 290 (478)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-07 Score=92.49 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=57.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC-CCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS-DSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~-~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
..+||+|||||++||++|..| .|++|+|+|++ +.+||.|.....+. +.+.. +....+.+... ...+ ...
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~---~~~~~-~~~~~~~~e~G-~~~~---~~~ 114 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKK---GEPSP-FADPAQYAEAG-AMRL---PSF 114 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCT---TSCCS-SSSTTCCEESS-CCCE---ETT
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccc---ccccc-ccCCCcEEecC-ceee---cch
Confidence 457999999999999999999 89999999999 99999887522111 11110 00001111000 0111 123
Q ss_pred HHHHHHHHHhcCCCCceEeeeE
Q 010421 80 LDYLESYAKHFDVFKCVRFNSK 101 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~ 101 (511)
..++.++++++++...+.++..
T Consensus 115 ~~~~~~~~~~lGl~~~~~~~~~ 136 (376)
T 2e1m_A 115 HPLTLALIDKLGLKRRLFFNVD 136 (376)
T ss_dssp CHHHHHHHHHTTCCEEEECSSC
T ss_pred HHHHHHHHHHcCCCcceeeccc
Confidence 4577788899998655555544
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-06 Score=89.55 Aligned_cols=64 Identities=11% Similarity=0.021 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+..+...|.+.+.+.++ .++++++|+++.... ++ .+-|.+.+..+++...+.++.||+|||.
T Consensus 142 g~~l~~~L~~~~~~~gv--~i~~~~~v~~L~~~~---------------~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg 204 (588)
T 2wdq_A 142 GHALLHTLYQQNLKNHT--TIFSEWYALDLVKNQ---------------DGAVVGCTALCIETGEVVYFKARATVLATGG 204 (588)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEETEEEEEEEECT---------------TSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCcEEEEEEECC---------------CCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence 46777888888888888 899999999998721 22 2345555433455557899999999997
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
++
T Consensus 205 ~~ 206 (588)
T 2wdq_A 205 AG 206 (588)
T ss_dssp CG
T ss_pred Cc
Confidence 63
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-06 Score=87.71 Aligned_cols=100 Identities=17% Similarity=0.292 Sum_probs=77.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. -.+++.+
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~d~~~~~ 221 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL--------------------------------RK--FDESVIN 221 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC--------------------------------cc--cchhhHH
Confidence 46899999999999999999 889999999976541 11 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeE-EEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQR-YGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~d~vVlAtG~~~~~p~ 160 (511)
++.+..++.++ .++++++|++++... ++...|.+.++. + +.+|.||+|+|. .|+
T Consensus 222 ~l~~~l~~~gv--~i~~~~~v~~i~~~~---------------~~~~~v~~~~g~-----~~~~~D~vi~a~G~---~p~ 276 (500)
T 1onf_A 222 VLENDMKKNNI--NIVTFADVVEIKKVS---------------DKNLSIHLSDGR-----IYEHFDHVIYCVGR---SPD 276 (500)
T ss_dssp HHHHHHHHTTC--EEECSCCEEEEEESS---------------TTCEEEEETTSC-----EEEEESEEEECCCB---CCT
T ss_pred HHHHHHHhCCC--EEEECCEEEEEEEcC---------------CceEEEEECCCc-----EEEECCEEEECCCC---CcC
Confidence 88888888899 899999999998721 234566665443 4 899999999994 566
Q ss_pred CC
Q 010421 161 IP 162 (511)
Q Consensus 161 ~p 162 (511)
..
T Consensus 277 ~~ 278 (500)
T 1onf_A 277 TE 278 (500)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=92.32 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 76 YTEILDYLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+..+...|.+.+.+.+ + .+.++++|+++... +++ +-|.+.+..+++...+.++.||+|||
T Consensus 133 g~~l~~~L~~~~~~~gnv--~i~~~~~v~~l~~~----------------~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 194 (602)
T 1kf6_A 133 GFHMLHTLFQTSLQFPQI--QRFDEHFVLDILVD----------------DGHVRGLVAMNMMEGTLVQIRANAVVMATG 194 (602)
T ss_dssp HHHHHHHHHHHHTTCTTE--EEEETEEEEEEEEE----------------TTEEEEEEEEETTTTEEEEEECSCEEECCC
T ss_pred HHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEEe----------------CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 4677777777777776 6 78899999999873 222 22444443345555789999999999
Q ss_pred ccC
Q 010421 154 KYG 156 (511)
Q Consensus 154 ~~~ 156 (511)
.++
T Consensus 195 g~s 197 (602)
T 1kf6_A 195 GAG 197 (602)
T ss_dssp CCG
T ss_pred CCc
Confidence 874
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=89.17 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=78.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+|+|+.+.+. +. ..+++.+
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 214 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEIL--------------------------------PQ--GDPETAA 214 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 47899999999999999999 899999999976541 10 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|++++.. ++...|++.+..+++..++.+|.||+|+|. .|+.
T Consensus 215 ~l~~~l~~~gV--~i~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~---~p~~ 273 (464)
T 2eq6_A 215 LLRRALEKEGI--RVRTKTKAVGYEKK----------------KDGLHVRLEPAEGGEGEEVVVDKVLVAVGR---KPRT 273 (464)
T ss_dssp HHHHHHHHTTC--EEECSEEEEEEEEE----------------TTEEEEEEEETTCCSCEEEEESEEEECSCE---EESC
T ss_pred HHHHHHHhcCC--EEEcCCEEEEEEEe----------------CCEEEEEEeecCCCceeEEEcCEEEECCCc---ccCC
Confidence 88888888898 89999999999873 334566665221123346899999999995 4555
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
+
T Consensus 274 ~ 274 (464)
T 2eq6_A 274 E 274 (464)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=9.4e-07 Score=90.55 Aligned_cols=170 Identities=15% Similarity=0.087 Sum_probs=89.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCce--eccCCCCccccCCCCCCC-------CCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNST--KLQSHRSDYEFTDFPWPN-------RDD 70 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~ 70 (511)
.++|+|||+|.+|+.+|..| . +.+|+++++++.+-- .. .... ..-.|...-.|..++... ...
T Consensus 227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p--~~--~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 302 (463)
T 3s5w_A 227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP--AD--DSPFVNEVFAPKFTDLIYSREHAERERLLREYHN 302 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB--CC--CCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGG
T ss_pred CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC--cc--CCccchhccChhHHHHHhcCCHHHHHHHHHHhhc
Confidence 57899999999999999999 4 789999999765410 00 0000 000000000000000000 000
Q ss_pred --CCCCChH---HHHH--HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEE
Q 010421 71 --PGFPSYT---EILD--YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY 143 (511)
Q Consensus 71 --~~~~~~~---~~~~--yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 143 (511)
..-.... ++.+ |.+.+....++ .++++++|++++.. ++.|.|++++..+++..++
T Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v--~i~~~~~v~~v~~~----------------~~~~~v~~~~~~~g~~~~~ 364 (463)
T 3s5w_A 303 TNYSVVDTDLIERIYGVFYRQKVSGIPRH--AFRCMTTVERATAT----------------AQGIELALRDAGSGELSVE 364 (463)
T ss_dssp GTSSCBCHHHHHHHHHHHHHHHHHCCCCS--EEETTEEEEEEEEE----------------TTEEEEEEEETTTCCEEEE
T ss_pred cCCCcCCHHHHHHHHHHHHHHHhcCCCCe--EEEeCCEEEEEEec----------------CCEEEEEEEEcCCCCeEEE
Confidence 0000111 1110 11111112355 78899999999873 5668899987655665679
Q ss_pred EeCEEEEeecccCCCCC--CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCC
Q 010421 144 GFEFLVVCTGKYGDVPI--IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFK 206 (511)
Q Consensus 144 ~~d~vVlAtG~~~~~p~--~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G 206 (511)
.+|.||+|||.. |+ .+-+. ++....|.+....+++... ......+|-++|..
T Consensus 365 ~~D~Vv~AtG~~---p~~~~~~l~---~l~~~~g~i~v~~~~~~~~-----~~~~~~~Ifa~G~~ 418 (463)
T 3s5w_A 365 TYDAVILATGYE---RQLHRQLLE---PLAEYLGDHEIGRDYRLQT-----DERCKVAIYAQGFS 418 (463)
T ss_dssp EESEEEECCCEE---CCC-CTTTG---GGGGGBC--CCCTTSBCCB-----CTTBCSEEEESSCC
T ss_pred ECCEEEEeeCCC---CCCccchhH---HHHHHhCCcccCccccccc-----CCCCCCeEEEcCCC
Confidence 999999999965 44 33233 3222225555555554311 11124568888863
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=9.8e-07 Score=88.08 Aligned_cols=96 Identities=13% Similarity=0.180 Sum_probs=75.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. ..+ ...++.+
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------------------------~~~-~~~~~~~ 191 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVM--------------------------------PGL-LHPAAAK 191 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS--------------------------------TTT-SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchh--------------------------------hcc-cCHHHHH
Confidence 57899999999999999999 899999999976541 111 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+..++.++ .++++++|.+++.. ++.+.|.+.++. ++.+|.||+|+|..
T Consensus 192 ~l~~~l~~~gv--~i~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~i~~d~vv~a~G~~ 242 (384)
T 2v3a_A 192 AVQAGLEGLGV--RFHLGPVLASLKKA----------------GEGLEAHLSDGE-----VIPCDLVVSAVGLR 242 (384)
T ss_dssp HHHHHHHTTTC--EEEESCCEEEEEEE----------------TTEEEEEETTSC-----EEEESEEEECSCEE
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEec----------------CCEEEEEECCCC-----EEECCEEEECcCCC
Confidence 88888888888 89999999999873 334566665543 78999999999954
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.8e-07 Score=91.25 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=30.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
||+|||||++|+++|..| .|.+|+|+|+. ..||.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~ 36 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS 36 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence 799999999999999999 89999999998 55553
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-06 Score=91.01 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+..+...|.+.+.+.++ .++++++|+++... +++ .-|.+.+..+++...+.++.||+|||.
T Consensus 154 G~~l~~~L~~~~~~~gv--~i~~~~~v~~Li~~----------------~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG 215 (621)
T 2h88_A 154 GHSLLHTLYGRSLRYDT--SYFVEYFALDLLME----------------NGECRGVIALCIEDGTIHRFRAKNTVIATGG 215 (621)
T ss_dssp HHHHHHHHHHHHTTSCC--EEEETEEEEEEEEE----------------TTEEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCC--EEEEceEEEEEEEE----------------CCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 55777778887877787 89999999999862 232 234555433455567899999999997
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
++
T Consensus 216 ~~ 217 (621)
T 2h88_A 216 YG 217 (621)
T ss_dssp CG
T ss_pred cc
Confidence 63
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.8e-07 Score=92.76 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=32.1
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG 39 (511)
.+||+|||||++|+++|..| .|.+|+|+||....+|
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~G~~V~vlEk~~~~~g 44 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEG 44 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTTTSCEEEECSSCTTC-
T ss_pred CCCEEEECccHHHHHHHHHHhcCCcEEEEECCCCCCC
Confidence 47999999999999999999 8899999999877654
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=90.71 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEe
Q 010421 74 PSYTEILDYLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVC 151 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlA 151 (511)
..+..+.++|.+.+++ .++ .++++ +|++++... ++ ...|.+.++. ++.+|.||.|
T Consensus 172 ~~r~~l~~~L~~~a~~~~Gv--~i~~~-~v~~i~~~~---------------~g~~~~v~~~~g~-----~i~ad~vV~A 228 (526)
T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGV--THIRD-HVSQIINNQ---------------HGDIEKLITKQNG-----EISGQLFIDC 228 (526)
T ss_dssp ECHHHHHHHHHHHHHHTSCC--EEEEC-CEEEEEECT---------------TSCEEEEEESSSC-----EEECSEEEEC
T ss_pred EcHHHHHHHHHHHHHhcCCC--EEEEe-EEEEEEecC---------------CCcEEEEEECCCC-----EEEcCEEEEC
Confidence 3577888999999988 888 78888 699998721 22 1244444332 6899999999
Q ss_pred ecccC
Q 010421 152 TGKYG 156 (511)
Q Consensus 152 tG~~~ 156 (511)
+|..|
T Consensus 229 dG~~S 233 (526)
T 2pyx_A 229 TGAKS 233 (526)
T ss_dssp SGGGC
T ss_pred CCcch
Confidence 99875
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=88.79 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=77.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. -..++.+
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 212 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL--------------------------------PS--FDPMISE 212 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh--------------------------------hh--hhHHHHH
Confidence 46899999999999999999 899999999976541 11 1246777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++... ++...|++.++. ++.+|.||+|+|. .|+.
T Consensus 213 ~l~~~l~~~Gv--~i~~~~~v~~i~~~~---------------~~~~~v~~~~g~-----~i~~D~vv~a~G~---~p~~ 267 (450)
T 1ges_A 213 TLVEVMNAEGP--QLHTNAIPKAVVKNT---------------DGSLTLELEDGR-----SETVDCLIWAIGR---EPAN 267 (450)
T ss_dssp HHHHHHHHHSC--EEECSCCEEEEEECT---------------TSCEEEEETTSC-----EEEESEEEECSCE---EESC
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEeC---------------CcEEEEEECCCc-----EEEcCEEEECCCC---CcCC
Confidence 88888888898 899999999998721 334567665543 7899999999995 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 268 ~ 268 (450)
T 1ges_A 268 D 268 (450)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-07 Score=94.43 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=73.0
Q ss_pred CeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCc---Ccccc--CCCcC-----cee----c---cCCCCcccc--C
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSI---GGIWK--SCSYN-----STK----L---QSHRSDYEF--T 61 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~---GG~w~--~~~~~-----~~~----~---~~~~~~~~~--~ 61 (511)
+||+|||||++|+++|..| . |++|+|+|+++.+ |+... .+... ++. + ..+...+.+ .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 4899999999999999999 6 9999999998766 32111 10110 000 0 000000000 0
Q ss_pred CCCCCCC--CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCc
Q 010421 62 DFPWPNR--DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS 139 (511)
Q Consensus 62 ~~~~~~~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (511)
+..+... .......+.++.+.|.+.+++.++ .++++++|++++. . .
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~-----------------~----------~--- 128 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGI--AIRFESPLLEHGE-----------------L----------P--- 128 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTC--EEETTCCCCSGGG-----------------C----------C---
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCC--EEEeCCEeccchh-----------------c----------c---
Confidence 0001000 001124678899999999988887 7899988876542 1 0
Q ss_pred eeEEEeCEEEEeecccC
Q 010421 140 IQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 140 ~~~~~~d~vVlAtG~~~ 156 (511)
++.+|.||.|+|.+|
T Consensus 129 --~~~ad~vV~AdG~~S 143 (381)
T 3c4a_A 129 --LADYDLVVLANGVNH 143 (381)
T ss_dssp --GGGCSEEEECCGGGG
T ss_pred --cccCCEEEECCCCCc
Confidence 356999999999885
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=87.37 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=77.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+. +. ...++.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 215 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL--------------------------------SG--FEKQMAA 215 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 47899999999999999999 899999999976541 11 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|++++.. ++...+++.+. +...++.+|.||+|+|. .|+.
T Consensus 216 ~l~~~l~~~gv--~i~~~~~v~~i~~~----------------~~~~~v~~~~~--g~~~~~~~D~vv~a~G~---~p~~ 272 (455)
T 1ebd_A 216 IIKKRLKKKGV--EVVTNALAKGAEER----------------EDGVTVTYEAN--GETKTIDADYVLVTVGR---RPNT 272 (455)
T ss_dssp HHHHHHHHTTC--EEEESEEEEEEEEE----------------TTEEEEEEEET--TEEEEEEESEEEECSCE---EESC
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEe----------------CCeEEEEEEeC--CceeEEEcCEEEECcCC---Cccc
Confidence 88888888898 89999999999863 33355665522 12237899999999995 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
+
T Consensus 273 ~ 273 (455)
T 1ebd_A 273 D 273 (455)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-06 Score=87.16 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=80.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~d~~~~~ 243 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTIL--------------------------------GG--MDGEVAK 243 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS--------------------------------SS--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccc--------------------------------cc--CCHHHHH
Confidence 46899999999999999999 889999999976541 11 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++...+.+.+..+++..++.+|.||+|+|. .|+.
T Consensus 244 ~l~~~l~~~gV--~v~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~---~p~~ 302 (491)
T 3urh_A 244 QLQRMLTKQGI--DFKLGAKVTGAVKS----------------GDGAKVTFEPVKGGEATTLDAEVVLIATGR---KPST 302 (491)
T ss_dssp HHHHHHHHTTC--EEECSEEEEEEEEE----------------TTEEEEEEEETTSCCCEEEEESEEEECCCC---EECC
T ss_pred HHHHHHHhCCC--EEEECCeEEEEEEe----------------CCEEEEEEEecCCCceEEEEcCEEEEeeCC---ccCC
Confidence 88888888898 89999999999873 345567777643333347899999999994 5555
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 303 ~ 303 (491)
T 3urh_A 303 D 303 (491)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=91.33 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHHHhc-CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEe
Q 010421 74 PSYTEILDYLESYAKHF-DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVC 151 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlA 151 (511)
....++.++|.+.+++. ++ .++++ +|+++.... ++ .+.|.+.++. ++.+|.||+|
T Consensus 191 ~~~~~l~~~L~~~~~~~~Gv--~i~~~-~V~~i~~~~---------------~g~~~~v~~~~G~-----~i~ad~vI~A 247 (550)
T 2e4g_A 191 FDAHLVADFLRRFATEKLGV--RHVED-RVEHVQRDA---------------NGNIESVRTATGR-----VFDADLFVDC 247 (550)
T ss_dssp ECHHHHHHHHHHHHHHHSCC--EEEEC-CEEEEEECT---------------TSCEEEEEETTSC-----EEECSEEEEC
T ss_pred EcHHHHHHHHHHHHHhcCCc--EEEEC-eEeEEEEcC---------------CCCEEEEEECCCC-----EEECCEEEEC
Confidence 46778899999999888 88 88999 999998721 22 2345544432 7899999999
Q ss_pred ecccC
Q 010421 152 TGKYG 156 (511)
Q Consensus 152 tG~~~ 156 (511)
+|..|
T Consensus 248 ~G~~S 252 (550)
T 2e4g_A 248 SGFRG 252 (550)
T ss_dssp CGGGC
T ss_pred CCCch
Confidence 99874
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.3e-06 Score=85.87 Aligned_cols=102 Identities=21% Similarity=0.302 Sum_probs=76.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+.. .. -.+++.+
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~--~~~~~~~ 224 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG-------------------------------VG--IDMEISK 224 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC-------------------------------SS--CCHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC-------------------------------cc--cCHHHHH
Confidence 46899999999999999999 8999999999765410 01 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+..++.++ .++++++|++++... ++...+++.+...+...++.+|.||+|+|..
T Consensus 225 ~l~~~l~~~Gv--~i~~~~~v~~i~~~~---------------~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~ 281 (474)
T 1zmd_A 225 NFQRILQKQGF--KFKLNTKVTGATKKS---------------DGKIDVSIEAASGGKAEVITCDVLLVCIGRR 281 (474)
T ss_dssp HHHHHHHHTTC--EEECSEEEEEEEECT---------------TSCEEEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred HHHHHHHHCCC--EEEeCceEEEEEEcC---------------CceEEEEEEecCCCCceEEEcCEEEECcCCC
Confidence 88888888999 899999999998721 2225666543211122378999999999953
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=5.4e-06 Score=88.15 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
+..+...|.+.+.+.++ .+.++++|+++... +++ .-|.+.+..+++...+.+|.||+|||.
T Consensus 157 G~~l~~~L~~~a~~~gv--~i~~~~~v~~L~~~----------------~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG 218 (660)
T 2bs2_A 157 GHTMLFAVANECLKLGV--SIQDRKEAIALIHQ----------------DGKCYGAVVRDLVTGDIIAYVAKGTLIATGG 218 (660)
T ss_dssp HHHHHHHHHHHHHHHTC--EEECSEEEEEEEEE----------------TTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCC--EEEECcEEEEEEec----------------CCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence 56777888888888888 89999999999862 222 224444433455556899999999997
Q ss_pred c
Q 010421 155 Y 155 (511)
Q Consensus 155 ~ 155 (511)
+
T Consensus 219 ~ 219 (660)
T 2bs2_A 219 Y 219 (660)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.4e-06 Score=87.06 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=76.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++|+|||+|++|+.+|..| .|.+|+++|+.+.+.. .. ...++.
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~--~~~~~~ 194 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG-------------------------------VY--LDKEFT 194 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------TT--CCHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccc-------------------------------cc--CCHHHH
Confidence 457999999999999999999 8999999999765411 00 135677
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+++.+.+++.++ .++++++|++++.. +..+.+.+ ++. ++.+|.||+|+|. .|+
T Consensus 195 ~~l~~~l~~~gv--~i~~~~~v~~i~~~----------------~~v~~v~~-~~~-----~i~~d~vi~a~G~---~p~ 247 (447)
T 1nhp_A 195 DVLTEEMEANNI--TIATGETVERYEGD----------------GRVQKVVT-DKN-----AYDADLVVVAVGV---RPN 247 (447)
T ss_dssp HHHHHHHHTTTE--EEEESCCEEEEECS----------------SBCCEEEE-SSC-----EEECSEEEECSCE---EES
T ss_pred HHHHHHHHhCCC--EEEcCCEEEEEEcc----------------CcEEEEEE-CCC-----EEECCEEEECcCC---CCC
Confidence 888888888888 89999999999862 22234444 322 7899999999995 455
Q ss_pred CCCC
Q 010421 161 IPAF 164 (511)
Q Consensus 161 ~p~~ 164 (511)
.+.+
T Consensus 248 ~~~~ 251 (447)
T 1nhp_A 248 TAWL 251 (447)
T ss_dssp CGGG
T ss_pred hHHH
Confidence 5433
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=87.43 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=30.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~ 37 (511)
+.+||+|||||++|+++|..| .| .+|+|+|++..+
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~ 59 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAP 59 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSST
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCC
Confidence 357999999999999999999 78 899999994443
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.1e-06 Score=86.85 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=78.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ..+++.+
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 222 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV--------------------------------PT--MDAEIRK 222 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc--------------------------------cc--ccHHHHH
Confidence 47899999999999999999 899999999976541 11 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|.+++.. ++...|.+.+..+++..++.+|.||+|+|. .|+.
T Consensus 223 ~l~~~l~~~gv--~i~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~---~p~~ 281 (470)
T 1dxl_A 223 QFQRSLEKQGM--KFKLKTKVVGVDTS----------------GDGVKLTVEPSAGGEQTIIEADVVLVSAGR---TPFT 281 (470)
T ss_dssp HHHHHHHHSSC--CEECSEEEEEEECS----------------SSSEEEEEEESSSCCCEEEEESEEECCCCE---EECC
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEEc----------------CCeEEEEEEecCCCcceEEECCEEEECCCC---CcCC
Confidence 88888888898 89999999999862 334566665321222237899999999995 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 282 ~ 282 (470)
T 1dxl_A 282 S 282 (470)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-06 Score=84.18 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=77.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+.. . ....++.+
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~-------------------------------~--~~~~~~~~ 198 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA-------------------------------R--VAGEALSE 198 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------T--TSCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh-------------------------------h--hcCHHHHH
Confidence 57899999999999999999 8899999999765410 0 12367788
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
++.+..++.++ .++++++|++++.. +++ ..|.+.++. ++.+|.||+|+|. .|+
T Consensus 199 ~l~~~l~~~GV--~i~~~~~v~~i~~~----------------~~~v~~v~l~dG~-----~i~aD~Vv~a~G~---~p~ 252 (415)
T 3lxd_A 199 FYQAEHRAHGV--DLRTGAAMDCIEGD----------------GTKVTGVRMQDGS-----VIPADIVIVGIGI---VPC 252 (415)
T ss_dssp HHHHHHHHTTC--EEEETCCEEEEEES----------------SSBEEEEEESSSC-----EEECSEEEECSCC---EES
T ss_pred HHHHHHHhCCC--EEEECCEEEEEEec----------------CCcEEEEEeCCCC-----EEEcCEEEECCCC---ccC
Confidence 88888899999 89999999999872 222 246665554 7999999999994 455
Q ss_pred C
Q 010421 161 I 161 (511)
Q Consensus 161 ~ 161 (511)
.
T Consensus 253 ~ 253 (415)
T 3lxd_A 253 V 253 (415)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.5e-06 Score=92.24 Aligned_cols=36 Identities=50% Similarity=0.688 Sum_probs=34.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
.+||+|||||++|+++|..| .|++|+|+|+++.+||
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg 373 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG 373 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence 47999999999999999999 8999999999998888
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-06 Score=87.09 Aligned_cols=106 Identities=16% Similarity=0.030 Sum_probs=71.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhh
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLL 277 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 277 (511)
|+|+|||+|..|+.+|..|.+.+.. .+||++.+++.+...... .....
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~---~~VtlI~~~~~~~~~p~l--------------~~v~~--------------- 50 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPD---LKITLISDRPYFGFTPAF--------------PHLAM--------------- 50 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTT---CEEEEECSSSEEECGGGH--------------HHHHH---------------
T ss_pred CcEEEECCCHHHHHHHHHHhccCcC---CeEEEEcCCCCCccCccH--------------HHHhc---------------
Confidence 7899999999999999999987643 469999998754321100 00000
Q ss_pred hhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEeCC--cEEEcCC
Q 010421 278 LSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKG--GLEFEDN 355 (511)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~--~v~~~dG 355 (511)
.. +.++ .+...+.+.+++.+|+++.+.+.+++.+ .|+++||
T Consensus 51 -----------------g~-------~~~~-------------~i~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g 93 (430)
T 3hyw_A 51 -----------------GW-------RKFE-------------DISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSG 93 (430)
T ss_dssp -----------------TC-------SCGG-------------GSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTC
T ss_pred -----------------CC-------CCHH-------------HhhhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCC
Confidence 00 0000 0001122345566899999999999754 4899999
Q ss_pred ceeeccEEEEecCCCCc
Q 010421 356 TKLEADVVILCTGYDGK 372 (511)
Q Consensus 356 ~~~~~D~VI~aTG~~~~ 372 (511)
+++++|.+|+|||-++.
T Consensus 94 ~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 94 KKIEYDYLVIATGPKLV 110 (430)
T ss_dssp CEEECSEEEECCCCEEE
T ss_pred CEEECCEEEEeCCCCcc
Confidence 99999999999998754
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-06 Score=89.17 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 74 PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
..+..+.+.|.+.+.+.++ .++++ +|+++.... ++ .+.|++.++. ++.+|.||.|+
T Consensus 170 ~~~~~l~~~L~~~a~~~gv--~~~~~-~v~~i~~~~---------------~~~~~~v~~~~g~-----~~~ad~vV~A~ 226 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGV--RHVVD-DVQHVGQDE---------------RGWISGVHTKQHG-----EISGDLFVDCT 226 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTC--EEEEC-CEEEEEECT---------------TSCEEEEEESSSC-----EEECSEEEECC
T ss_pred EcHHHHHHHHHHHHHHCCC--EEEEC-eEeEEEEcC---------------CCCEEEEEECCCC-----EEEcCEEEECC
Confidence 4678888999999988888 88898 999998721 22 2445554432 78999999999
Q ss_pred cccC
Q 010421 153 GKYG 156 (511)
Q Consensus 153 G~~~ 156 (511)
|..|
T Consensus 227 G~~S 230 (511)
T 2weu_A 227 GFRG 230 (511)
T ss_dssp GGGC
T ss_pred Ccch
Confidence 9875
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-06 Score=86.63 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=77.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--c---CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R---HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
.++++|||+|+.|+.+|..| . |.+|+++|+.+.+. +. -..+
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l--------------------------------~~--~d~~ 232 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--------------------------------RG--FDSE 232 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--------------------------------TT--SCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc--------------------------------cc--cCHH
Confidence 46899999999999999999 6 99999999976541 11 1346
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.+.+.+.+++.++ .++++++|++++... ++...|.+.++. ++.+|.||+|+|. .
T Consensus 233 ~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~---------------~~~~~v~~~~G~-----~i~~D~vv~a~G~---~ 287 (490)
T 1fec_A 233 LRKQLTEQLRANGI--NVRTHENPAKVTKNA---------------DGTRHVVFESGA-----EADYDVVMLAIGR---V 287 (490)
T ss_dssp HHHHHHHHHHHTTE--EEEETCCEEEEEECT---------------TSCEEEEETTSC-----EEEESEEEECSCE---E
T ss_pred HHHHHHHHHHhCCC--EEEeCCEEEEEEEcC---------------CCEEEEEECCCc-----EEEcCEEEEccCC---C
Confidence 77888888888898 899999999998721 334667665543 7899999999995 4
Q ss_pred CCCC
Q 010421 159 PIIP 162 (511)
Q Consensus 159 p~~p 162 (511)
|+..
T Consensus 288 p~~~ 291 (490)
T 1fec_A 288 PRSQ 291 (490)
T ss_dssp ESCT
T ss_pred cCcc
Confidence 5543
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.4e-06 Score=84.92 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=75.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+... . ...++.+
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~-------------------------------~--~~~~~~~ 189 (410)
T 3ef6_A 143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR-------------------------------V--LGRRIGA 189 (410)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH-------------------------------H--HCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh-------------------------------h--cCHHHHH
Confidence 57899999999999999999 88999999997543110 0 1246778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+..++.++ .++++++|.+++.. +....|.+.++. ++.+|.||+|+|..
T Consensus 190 ~l~~~l~~~GV--~i~~~~~v~~i~~~----------------~~~~~v~~~dg~-----~i~aD~Vv~a~G~~ 240 (410)
T 3ef6_A 190 WLRGLLTELGV--QVELGTGVVGFSGE----------------GQLEQVMASDGR-----SFVADSALICVGAE 240 (410)
T ss_dssp HHHHHHHHHTC--EEECSCCEEEEECS----------------SSCCEEEETTSC-----EEECSEEEECSCEE
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEecc----------------CcEEEEEECCCC-----EEEcCEEEEeeCCe
Confidence 88888888898 89999999999862 233457776654 79999999999954
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.5e-06 Score=86.17 Aligned_cols=100 Identities=10% Similarity=0.128 Sum_probs=77.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--c---CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R---HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
.++++|||+|+.|+.+|..| . |.+|+++++.+.+. +. -..+
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l--------------------------------~~--~d~~ 236 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL--------------------------------RG--FDET 236 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC--------------------------------TT--SCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc--------------------------------cc--cCHH
Confidence 46899999999999999999 6 99999999976541 11 1346
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCC
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
+.+.+.+.+++.++ .++++++|++++... ++...|++.++. ++.+|.||+|+|. .
T Consensus 237 ~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~---------------~~~~~v~~~~G~-----~i~~D~vv~a~G~---~ 291 (495)
T 2wpf_A 237 IREEVTKQLTANGI--EIMTNENPAKVSLNT---------------DGSKHVTFESGK-----TLDVDVVMMAIGR---I 291 (495)
T ss_dssp HHHHHHHHHHHTTC--EEEESCCEEEEEECT---------------TSCEEEEETTSC-----EEEESEEEECSCE---E
T ss_pred HHHHHHHHHHhCCC--EEEeCCEEEEEEEcC---------------CceEEEEECCCc-----EEEcCEEEECCCC---c
Confidence 77888888888899 899999999998721 334567665543 7899999999995 4
Q ss_pred CCCC
Q 010421 159 PIIP 162 (511)
Q Consensus 159 p~~p 162 (511)
|+..
T Consensus 292 p~~~ 295 (495)
T 2wpf_A 292 PRTN 295 (495)
T ss_dssp ECCG
T ss_pred cccc
Confidence 5543
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=5.9e-06 Score=83.73 Aligned_cols=98 Identities=12% Similarity=0.211 Sum_probs=74.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. .. ....++.+
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~~-~~~~~~~~ 195 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL--------------------------------ER-VTAPPVSA 195 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT--------------------------------TT-TSCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc--------------------------------cc-hhhHHHHH
Confidence 57899999999999999999 899999999975431 00 01356777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+..++.++ .++++++|++++... + ++. ..|.+.++. ++.+|.||+|+|..
T Consensus 196 ~l~~~l~~~GV--~i~~~~~v~~i~~~~-~-------------~~~v~~v~~~~G~-----~i~~D~Vv~a~G~~ 249 (431)
T 1q1r_A 196 FYEHLHREAGV--DIRTGTQVCGFEMST-D-------------QQKVTAVLCEDGT-----RLPADLVIAGIGLI 249 (431)
T ss_dssp HHHHHHHHHTC--EEECSCCEEEEEECT-T-------------TCCEEEEEETTSC-----EEECSEEEECCCEE
T ss_pred HHHHHHHhCCe--EEEeCCEEEEEEecc-C-------------CCcEEEEEeCCCC-----EEEcCEEEECCCCC
Confidence 88888888898 899999999998610 0 233 346655543 78999999999953
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.1e-06 Score=84.17 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=75.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~d~~~~~ 219 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVA--------------------------------NL--QDEEMKR 219 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCT--------------------------------TC--CCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc--------------------------------cc--CCHHHHH
Confidence 47899999999999999999 899999999986541 11 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++. + .++++++|++++.. ++...+.+.+. +++..++.+|.||+|+|. .|+.
T Consensus 220 ~l~~~l~~~-V--~i~~~~~v~~i~~~----------------~~~v~v~~~~~-~G~~~~i~~D~Vi~a~G~---~p~~ 276 (492)
T 3ic9_A 220 YAEKTFNEE-F--YFDAKARVISTIEK----------------EDAVEVIYFDK-SGQKTTESFQYVLAATGR---KANV 276 (492)
T ss_dssp HHHHHHHTT-S--EEETTCEEEEEEEC----------------SSSEEEEEECT-TCCEEEEEESEEEECSCC---EESC
T ss_pred HHHHHHhhC-c--EEEECCEEEEEEEc----------------CCEEEEEEEeC-CCceEEEECCEEEEeeCC---ccCC
Confidence 777776665 6 78999999999873 33455666531 233347899999999994 5665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 277 ~ 277 (492)
T 3ic9_A 277 D 277 (492)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=6.8e-06 Score=84.13 Aligned_cols=102 Identities=20% Similarity=0.158 Sum_probs=77.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ...++.+
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 216 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL--------------------------------PN--EDADVSK 216 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 47899999999999999999 899999999976541 11 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|++++.. ++...+.+.+ +++..++.+|.||+|+|. .|+.
T Consensus 217 ~l~~~l~~~gv--~i~~~~~v~~i~~~----------------~~~~~v~~~~--~g~~~~~~~D~vv~a~G~---~p~~ 273 (464)
T 2a8x_A 217 EIEKQFKKLGV--TILTATKVESIADG----------------GSQVTVTVTK--DGVAQELKAEKVLQAIGF---APNV 273 (464)
T ss_dssp HHHHHHHHHTC--EEECSCEEEEEEEC----------------SSCEEEEEES--SSCEEEEEESEEEECSCE---EECC
T ss_pred HHHHHHHHcCC--EEEeCcEEEEEEEc----------------CCeEEEEEEc--CCceEEEEcCEEEECCCC---CccC
Confidence 88888888898 89999999999872 2334565542 122237899999999995 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 274 ~ 274 (464)
T 2a8x_A 274 E 274 (464)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=82.88 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=80.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..| .|.+|+++++. .+. +.+ ..++.+
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l--------------------------------~~~--d~~~~~ 231 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVL--------------------------------RGF--DQQMAE 231 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSS--------------------------------TTS--CHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCC--------------------------------ccc--CHHHHH
Confidence 46899999999999999999 89999999984 220 111 356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|.+++... ++...|++.++.+++..++.+|.||+|+|. .|+.
T Consensus 232 ~l~~~l~~~Gv--~i~~~~~v~~i~~~~---------------~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~---~p~~ 291 (483)
T 3dgh_A 232 LVAASMEERGI--PFLRKTVPLSVEKQD---------------DGKLLVKYKNVETGEESEDVYDTVLWAIGR---KGLV 291 (483)
T ss_dssp HHHHHHHHTTC--CEEETEEEEEEEECT---------------TSCEEEEEEETTTCCEEEEEESEEEECSCE---EECC
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEcC---------------CCcEEEEEecCCCCceeEEEcCEEEECccc---ccCc
Confidence 88888888898 899999999998731 445667777765455557899999999995 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 292 ~ 292 (483)
T 3dgh_A 292 D 292 (483)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.2e-06 Score=83.22 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=75.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..| .|.+|+++++.+.+.. .. -..++.+
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~--~d~~~~~ 193 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP-------------------------------KY--FDKEMVA 193 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------TT--CCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc-------------------------------cc--CCHHHHH
Confidence 46899999999999999999 8999999999765410 00 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+.+++.++ .++++++|++++.. ++...|.+.++ ++.+|.||+|+| ..|+.
T Consensus 194 ~l~~~l~~~GV--~i~~~~~v~~i~~~----------------~~~v~v~~~~g------~i~aD~Vv~A~G---~~p~~ 246 (452)
T 3oc4_A 194 EVQKSLEKQAV--IFHFEETVLGIEET----------------ANGIVLETSEQ------EISCDSGIFALN---LHPQL 246 (452)
T ss_dssp HHHHHHHTTTE--EEEETCCEEEEEEC----------------SSCEEEEESSC------EEEESEEEECSC---CBCCC
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEcc----------------CCeEEEEECCC------EEEeCEEEECcC---CCCCh
Confidence 88888888888 89999999999862 33444554221 789999999999 45665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 247 ~ 247 (452)
T 3oc4_A 247 A 247 (452)
T ss_dssp S
T ss_pred H
Confidence 4
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.3e-06 Score=86.91 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=76.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+|+|+.+.+. +. ..+++.+
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 230 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM--------------------------------QG--ADRDLVK 230 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 899999999976541 11 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe-CCCCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT-HNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
++.+..++.++ .++++++|.+++.. ++...|.+.+ ...++ ++.+|.||+|+|. .|+
T Consensus 231 ~l~~~l~~~gV--~i~~~~~v~~i~~~----------------~~~~~v~~~~~~~~g~--~~~~D~vv~a~G~---~p~ 287 (482)
T 1ojt_A 231 VWQKQNEYRFD--NIMVNTKTVAVEPK----------------EDGVYVTFEGANAPKE--PQRYDAVLVAAGR---APN 287 (482)
T ss_dssp HHHHHHGGGEE--EEECSCEEEEEEEE----------------TTEEEEEEESSSCCSS--CEEESCEEECCCE---EEC
T ss_pred HHHHHHHhcCC--EEEECCEEEEEEEc----------------CCeEEEEEeccCCCce--EEEcCEEEECcCC---CcC
Confidence 88888888888 89999999999873 2335566665 11122 6789999999995 455
Q ss_pred C
Q 010421 161 I 161 (511)
Q Consensus 161 ~ 161 (511)
.
T Consensus 288 ~ 288 (482)
T 1ojt_A 288 G 288 (482)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=77.62 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=72.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|.+|+.+|..| .+.+|+++++.+.+ ....+..+
T Consensus 152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~------------------------------------~~~~~~~~ 195 (335)
T 2zbw_A 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF------------------------------------RAHEASVK 195 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC------------------------------------CSCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc------------------------------------CccHHHHH
Confidence 46899999999999999999 78899999996433 11134556
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+..++.++ .++++++|.+++.. ++...|.+.+..+++..++.+|.||+|+|..
T Consensus 196 ~l~~~l~~~gv--~v~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (335)
T 2zbw_A 196 ELMKAHEEGRL--EVLTPYELRRVEGD----------------ERVRWAVVFHNQTQEELALEVDAVLILAGYI 251 (335)
T ss_dssp HHHHHHHTTSS--EEETTEEEEEEEES----------------SSEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HHHhccccCCe--EEecCCcceeEccC----------------CCeeEEEEEECCCCceEEEecCEEEEeecCC
Confidence 67777777788 89999999999872 2223466664323333478999999999954
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.19 E-value=7e-06 Score=84.26 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
.++|+|||+|+.|+.+|..| . +.+|+++++.+.+.. .. ...++.
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~-------------------------------~~--~~~~~~ 205 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP-------------------------------GF--TSKSLS 205 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST-------------------------------TT--SCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc-------------------------------cc--cCHHHH
Confidence 47899999999999999999 6 999999999754310 01 135677
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+.+.+++.++ .++++++|++++.. ++..+|.+.+++ ++.+|.||+|+|..
T Consensus 206 ~~l~~~l~~~GV--~i~~~~~v~~i~~~----------------~~~v~v~~~~g~-----~i~aD~Vv~a~G~~ 257 (472)
T 3iwa_A 206 QMLRHDLEKNDV--VVHTGEKVVRLEGE----------------NGKVARVITDKR-----TLDADLVILAAGVS 257 (472)
T ss_dssp HHHHHHHHHTTC--EEECSCCEEEEEES----------------SSBEEEEEESSC-----EEECSEEEECSCEE
T ss_pred HHHHHHHHhcCC--EEEeCCEEEEEEcc----------------CCeEEEEEeCCC-----EEEcCEEEECCCCC
Confidence 888888888898 89999999999872 445567776654 79999999999953
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=8.5e-06 Score=78.79 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=72.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|++|+.+|..| .+.+|+++++.+.+ .....+.+
T Consensus 145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~------------------------------------~~~~~~~~ 188 (320)
T 1trb_A 145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF------------------------------------RAEKILIK 188 (320)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC------------------------------------CCCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc------------------------------------ccCHHHHH
Confidence 46899999999999999999 78899999986432 11245566
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCC-CceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNS-NSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+.+++.++ .++++++|++++... +....|.+.+..+ ++..++.+|.||+|+|..
T Consensus 189 ~l~~~l~~~gv--~i~~~~~v~~i~~~~---------------~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~ 246 (320)
T 1trb_A 189 RLMDKVENGNI--ILHTNRTLEEVTGDQ---------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 246 (320)
T ss_dssp HHHHHHHTSSE--EEECSCEEEEEEECS---------------SSEEEEEEECCTTCCCCEEEECSEEEECSCEE
T ss_pred HHHHhcccCCe--EEEcCceeEEEEcCC---------------CceEEEEEEeccCCCceEEEEcCEEEEEeCCC
Confidence 66666777788 889999999998721 2223466665322 333478999999999954
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.6e-06 Score=84.35 Aligned_cols=99 Identities=19% Similarity=0.165 Sum_probs=75.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ..+++.+
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~d~~~~~ 219 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA--------------------------------PT--LDEDVTN 219 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc--------------------------------cc--CCHHHHH
Confidence 46899999999999999999 889999999976541 11 1356778
Q ss_pred HHHHHH-HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYA-KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+.. ++.++ .++++++|++++.. ++...+.+.+. +++..++.+|.||+|+|..
T Consensus 220 ~l~~~l~~~~gv--~i~~~~~v~~i~~~----------------~~~~~v~~~~~-~g~~~~i~~D~vv~a~G~~ 275 (468)
T 2qae_A 220 ALVGALAKNEKM--KFMTSTKVVGGTNN----------------GDSVSLEVEGK-NGKRETVTCEALLVSVGRR 275 (468)
T ss_dssp HHHHHHHHHTCC--EEECSCEEEEEEEC----------------SSSEEEEEECC----EEEEEESEEEECSCEE
T ss_pred HHHHHHhhcCCc--EEEeCCEEEEEEEc----------------CCeEEEEEEcC-CCceEEEECCEEEECCCcc
Confidence 888888 88898 89999999999872 33456666521 1222378999999999953
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.5e-06 Score=82.79 Aligned_cols=92 Identities=21% Similarity=0.296 Sum_probs=73.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+.. .. ...++.+
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~--~~~~~~~ 191 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS-------------------------------RA--APATLAD 191 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-------------------------------cc--cCHHHHH
Confidence 57899999999999999999 8999999999765410 01 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+..++.++ .++++++|++++ . + .|++.++. ++.+|.||+|+|..
T Consensus 192 ~l~~~l~~~GV--~i~~~~~v~~i~-~----------------~---~v~~~~g~-----~i~~D~vi~a~G~~ 238 (408)
T 2gqw_A 192 FVARYHAAQGV--DLRFERSVTGSV-D----------------G---VVLLDDGT-----RIAADMVVVGIGVL 238 (408)
T ss_dssp HHHHHHHHTTC--EEEESCCEEEEE-T----------------T---EEEETTSC-----EEECSEEEECSCEE
T ss_pred HHHHHHHHcCc--EEEeCCEEEEEE-C----------------C---EEEECCCC-----EEEcCEEEECcCCC
Confidence 88888888899 899999999987 2 2 46665543 78999999999953
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-06 Score=84.88 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=71.9
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHH
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLC 275 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~ 275 (511)
.||||+|||+|..|+-+|..|.+.+.. .+|+++.+++........ .. ....
T Consensus 1 aGKkVvIIG~G~AG~~aA~~L~~~~~~---~~Vtlie~~~~~~~~p~~-------~~-------v~~g------------ 51 (401)
T 3vrd_B 1 AGRKVVVVGGGTGGATAAKYIKLADPS---IEVTLIEPNETYYTCYMS-------NE-------VIGG------------ 51 (401)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCTT---SEEEEECSCSSEECSTTH-------HH-------HHHT------------
T ss_pred CcCEEEEECCcHHHHHHHHHHHhcCcC---CeEEEEeCCCCCCCccCH-------HH-------HhcC------------
Confidence 489999999999999999999887643 469999887754322110 00 0000
Q ss_pred hhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEeCC--cEEEc
Q 010421 276 LLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKG--GLEFE 353 (511)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~--~v~~~ 353 (511)
... ++ .. ..+ ++.+.+.+|+++.+.+..++.+ .|++.
T Consensus 52 --------------------~~~-------~~--------~~---~~~---~~~~~~~gv~~i~~~v~~id~~~~~v~~~ 90 (401)
T 3vrd_B 52 --------------------DRE-------LA--------SL---RVG---YDGLRAHGIQVVHDSALGIDPDKKLVKTA 90 (401)
T ss_dssp --------------------SSC-------GG--------GG---EEC---SHHHHHTTCEEECSCEEEEETTTTEEEET
T ss_pred --------------------CCC-------HH--------HH---hhC---HHHHHHCCCEEEEeEEEEEEccCcEEEec
Confidence 000 00 00 000 1233345688888888888754 48889
Q ss_pred CCceeeccEEEEecCCCCccc
Q 010421 354 DNTKLEADVVILCTGYDGKKK 374 (511)
Q Consensus 354 dG~~~~~D~VI~aTG~~~~~~ 374 (511)
+|.++++|.+|+|||.+++.+
T Consensus 91 ~g~~i~yd~LviAtG~~~~~~ 111 (401)
T 3vrd_B 91 GGAEFAYDRCVVAPGIDLLYD 111 (401)
T ss_dssp TSCEEECSEEEECCCEEECGG
T ss_pred ccceeecceeeeccCCccccC
Confidence 999999999999999987653
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.6e-06 Score=83.76 Aligned_cols=97 Identities=20% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.+.. . ....++.+
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------------~--~~~~~~~~ 188 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA-------------------------------R--VVTPEISS 188 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------T--TSCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh-------------------------------h--ccCHHHHH
Confidence 46899999999999999999 8899999999754310 1 12357788
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+..++.++ .++++++|.+++..+ +....|.+.++. ++.+|.||+|+|..
T Consensus 189 ~l~~~l~~~GV--~i~~~~~v~~i~~~~---------------~~v~~V~~~dG~-----~i~aD~Vv~a~G~~ 240 (404)
T 3fg2_P 189 YFHDRHSGAGI--RMHYGVRATEIAAEG---------------DRVTGVVLSDGN-----TLPCDLVVVGVGVI 240 (404)
T ss_dssp HHHHHHHHTTC--EEECSCCEEEEEEET---------------TEEEEEEETTSC-----EEECSEEEECCCEE
T ss_pred HHHHHHHhCCc--EEEECCEEEEEEecC---------------CcEEEEEeCCCC-----EEEcCEEEECcCCc
Confidence 88888888999 899999999998731 122235555554 78999999999954
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-05 Score=81.40 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=78.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 225 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL--------------------------------PA--VDEQVAK 225 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999976541 11 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++...+.+.+++ + ..++.+|.||+|+|. .|+.
T Consensus 226 ~l~~~l~~~Gv--~v~~~~~v~~i~~~----------------~~~~~v~~~~~~-g-~~~~~~D~vi~a~G~---~p~~ 282 (476)
T 3lad_A 226 EAQKILTKQGL--KILLGARVTGTEVK----------------NKQVTVKFVDAE-G-EKSQAFDKLIVAVGR---RPVT 282 (476)
T ss_dssp HHHHHHHHTTE--EEEETCEEEEEEEC----------------SSCEEEEEESSS-E-EEEEEESEEEECSCE---EECC
T ss_pred HHHHHHHhCCC--EEEECCEEEEEEEc----------------CCEEEEEEEeCC-C-cEEEECCEEEEeeCC---cccC
Confidence 88888888888 89999999999873 344567776543 2 337899999999995 4555
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 283 ~ 283 (476)
T 3lad_A 283 T 283 (476)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=82.32 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=79.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++...+ +.+ ..++.+
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l---------------------------------~~~--d~~~~~ 229 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL---------------------------------RGF--DQQMSS 229 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS---------------------------------TTS--CHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc---------------------------------ccC--CHHHHH
Confidence 35799999999999999999 89999999985211 111 356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|.+++... ++...|++.+..+++..++.+|.||+|+|. .|+.
T Consensus 230 ~l~~~l~~~gv--~~~~~~~v~~i~~~~---------------~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~---~p~~ 289 (488)
T 3dgz_A 230 LVTEHMESHGT--QFLKGCVPSHIKKLP---------------TNQLQVTWEDHASGKEDTGTFDTVLWAIGR---VPET 289 (488)
T ss_dssp HHHHHHHHTTC--EEEETEEEEEEEECT---------------TSCEEEEEEETTTTEEEEEEESEEEECSCE---EESC
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEcC---------------CCcEEEEEEeCCCCeeEEEECCEEEEcccC---Cccc
Confidence 88888888898 899999999998731 445667777754444456899999999994 4555
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 290 ~ 290 (488)
T 3dgz_A 290 R 290 (488)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.3e-06 Score=84.74 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=72.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++|+|||+|++|+.+|..| .|.+|+++|+.+.+.. . ...++.
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------~--~~~~~~ 230 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT--------------------------------I--YDGDMA 230 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS--------------------------------S--SCHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh--------------------------------c--CCHHHH
Confidence 357899999999999999999 8999999999754421 0 135677
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+++.+.+++.++ .++++++|++++.. ++.+.+.+ ++ . ++.+|.||+|+|..
T Consensus 231 ~~l~~~l~~~Gv--~i~~~~~v~~i~~~----------------~~v~~v~~-~~---~--~i~~D~vi~a~G~~ 281 (480)
T 3cgb_A 231 EYIYKEADKHHI--EILTNENVKAFKGN----------------ERVEAVET-DK---G--TYKADLVLVSVGVK 281 (480)
T ss_dssp HHHHHHHHHTTC--EEECSCCEEEEEES----------------SBEEEEEE-TT---E--EEECSEEEECSCEE
T ss_pred HHHHHHHHHcCc--EEEcCCEEEEEEcC----------------CcEEEEEE-CC---C--EEEcCEEEECcCCC
Confidence 888888888998 89999999999862 22223333 22 1 78999999999954
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.8e-06 Score=85.87 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=74.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||++|+.+|..| .|.+|+|+|+.+.+. +. ..+++.+
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 216 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL--------------------------------PT--YDSELTA 216 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 899999999976542 10 1346777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|++++. ++ +.+.. .+++..++.+|.||+|+|. .|+.
T Consensus 217 ~l~~~l~~~gv--~i~~~~~v~~i~~-----------------~~---v~v~~-~~G~~~~i~~D~vv~a~G~---~p~~ 270 (458)
T 1lvl_A 217 PVAESLKKLGI--ALHLGHSVEGYEN-----------------GC---LLAND-GKGGQLRLEADRVLVAVGR---RPRT 270 (458)
T ss_dssp HHHHHHHHHTC--EEETTCEEEEEET-----------------TE---EEEEC-SSSCCCEECCSCEEECCCE---EECC
T ss_pred HHHHHHHHCCC--EEEECCEEEEEEe-----------------CC---EEEEE-CCCceEEEECCEEEECcCC---CcCC
Confidence 88888888898 8999999999874 11 33332 1232237899999999995 4555
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
+
T Consensus 271 ~ 271 (458)
T 1lvl_A 271 K 271 (458)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-06 Score=87.23 Aligned_cols=47 Identities=43% Similarity=0.615 Sum_probs=40.4
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCccccCCCcCc
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGGIWKSCSYNS 48 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG~w~~~~~~~ 48 (511)
++.+||+|||||++||+||..| .| .+|+|+|+++.+||.+.....++
T Consensus 4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G 53 (424)
T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHG 53 (424)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCC
Confidence 3568999999999999999999 88 89999999999999877633333
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=7.1e-06 Score=84.82 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=76.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ...++.+
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~d~~~~~ 227 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL--------------------------------PY--EDADAAL 227 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS--------------------------------CC--SSHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 899999999976541 11 1346778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+.+++.++ .++++++|++++.. ++...|...++. ++.+|.||+|+|. .|+.
T Consensus 228 ~l~~~l~~~GV--~i~~~~~V~~i~~~----------------~~~v~v~~~~g~-----~i~aD~Vv~a~G~---~p~~ 281 (499)
T 1xdi_A 228 VLEESFAERGV--RLFKNARAASVTRT----------------GAGVLVTMTDGR-----TVEGSHALMTIGS---VPNT 281 (499)
T ss_dssp HHHHHHHHTTC--EEETTCCEEEEEEC----------------SSSEEEEETTSC-----EEEESEEEECCCE---EECC
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEe----------------CCEEEEEECCCc-----EEEcCEEEECCCC---CcCC
Confidence 88888888998 89999999999872 233445443332 7899999999995 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 282 ~ 282 (499)
T 1xdi_A 282 S 282 (499)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=5.6e-06 Score=84.84 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=73.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. + ...++.+
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~---~~~~~~~ 220 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF--------------------------------R---EDPAIGE 220 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--------------------------------T---SCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC--------------------------------C---CCHHHHH
Confidence 46899999999999999999 899999999975431 1 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+..++.++ .++++++|++++.. ++.+.|.+. + . ++.+|.||+|+|..
T Consensus 221 ~l~~~l~~~Gv--~i~~~~~v~~i~~~----------------~~~~~v~~~-~---~--~i~aD~Vv~a~G~~ 270 (467)
T 1zk7_A 221 AVTAAFRAEGI--EVLEHTQASQVAHM----------------DGEFVLTTT-H---G--ELRADKLLVATGRT 270 (467)
T ss_dssp HHHHHHHHTTC--EEETTCCEEEEEEE----------------TTEEEEEET-T---E--EEEESEEEECSCEE
T ss_pred HHHHHHHhCCC--EEEcCCEEEEEEEe----------------CCEEEEEEC-C---c--EEEcCEEEECCCCC
Confidence 88888888898 89999999999872 334555543 1 1 78999999999953
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=5.9e-06 Score=84.55 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=75.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. .. -..++.+
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 211 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL--------------------------------FQ--FDPLLSA 211 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 899999999976541 11 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. ++...|++.++ +. ++.+|.||+|+|. .|+.
T Consensus 212 ~l~~~l~~~gv--~i~~~~~v~~i~~~----------------~~~~~v~~~~G---~~-~i~~D~vv~a~G~---~p~~ 266 (463)
T 2r9z_A 212 TLAENMHAQGI--ETHLEFAVAALERD----------------AQGTTLVAQDG---TR-LEGFDSVIWAVGR---APNT 266 (463)
T ss_dssp HHHHHHHHTTC--EEESSCCEEEEEEE----------------TTEEEEEETTC---CE-EEEESEEEECSCE---EESC
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEe----------------CCeEEEEEeCC---cE-EEEcCEEEECCCC---CcCC
Confidence 78888888888 89999999999873 22355665443 21 5899999999995 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 267 ~ 267 (463)
T 2r9z_A 267 R 267 (463)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.9e-06 Score=84.68 Aligned_cols=99 Identities=17% Similarity=0.310 Sum_probs=74.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+.. .. ...++.+
T Consensus 194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~--~~~~~~~ 240 (490)
T 2bc0_A 194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA-------------------------------GY--YDRDLTD 240 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------TT--SCHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh-------------------------------hH--HHHHHHH
Confidence 57899999999999999999 8999999999765410 01 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|++++. + +....|.+ ++. ++.+|.||+|+|. .|+.
T Consensus 241 ~l~~~l~~~GV--~i~~~~~v~~i~~--~--------------~~v~~v~~-~g~-----~i~~D~Vi~a~G~---~p~~ 293 (490)
T 2bc0_A 241 LMAKNMEEHGI--QLAFGETVKEVAG--N--------------GKVEKIIT-DKN-----EYDVDMVILAVGF---RPNT 293 (490)
T ss_dssp HHHHHHHTTTC--EEEETCCEEEEEC--S--------------SSCCEEEE-SSC-----EEECSEEEECCCE---EECC
T ss_pred HHHHHHHhCCe--EEEeCCEEEEEEc--C--------------CcEEEEEE-CCc-----EEECCEEEECCCC---CcCh
Confidence 88888888898 8999999999985 1 11112443 332 7899999999995 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
+
T Consensus 294 ~ 294 (490)
T 2bc0_A 294 T 294 (490)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=82.70 Aligned_cols=105 Identities=17% Similarity=0.079 Sum_probs=78.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~d~~~~~ 232 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL--------------------------------RS--FDSMIST 232 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--------------------------------TT--SCHHHHH
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 899999999976541 11 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCce--eEEEeCEEEEeecccCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSI--QRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~d~vVlAtG~~~~~ 158 (511)
++.+..++.++ .++++++|++++... ++ ...|.+.+..+++. .++.+|.||+|+|. .
T Consensus 233 ~~~~~l~~~gv--~i~~~~~v~~i~~~~---------------~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~---~ 292 (478)
T 3dk9_A 233 NCTEELENAGV--EVLKFSQVKEVKKTL---------------SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR---V 292 (478)
T ss_dssp HHHHHHHHTTC--EEETTEEEEEEEECS---------------SSEEEEEEECCTTSCCEEEEEEEESEEEECSCE---E
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEcC---------------CCcEEEEEEccCCCCcccceEEEcCEEEEeecc---c
Confidence 88888888898 899999999998731 33 34555554322222 47899999999995 4
Q ss_pred CCCC
Q 010421 159 PIIP 162 (511)
Q Consensus 159 p~~p 162 (511)
|+..
T Consensus 293 p~~~ 296 (478)
T 3dk9_A 293 PNTK 296 (478)
T ss_dssp ESCT
T ss_pred cCCC
Confidence 5554
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.1e-06 Score=84.85 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ..+++.+
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~d~~~~~ 230 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL--------------------------------RK--FDECIQN 230 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc--------------------------------cc--cCHHHHH
Confidence 47899999999999999999 899999999976541 11 1356777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+.+..++.++ .++++++|++++... ++ ...|.+.+++ .++.+|.||+|+|. .|+
T Consensus 231 ~l~~~l~~~Gv--~i~~~~~v~~i~~~~---------------~~~~~~v~~~~G~----~~i~~D~vv~a~G~---~p~ 286 (479)
T 2hqm_A 231 TITDHYVKEGI--NVHKLSKIVKVEKNV---------------ETDKLKIHMNDSK----SIDDVDELIWTIGR---KSH 286 (479)
T ss_dssp HHHHHHHHHTC--EEECSCCEEEEEECC----------------CCCEEEEETTSC----EEEEESEEEECSCE---EEC
T ss_pred HHHHHHHhCCe--EEEeCCEEEEEEEcC---------------CCcEEEEEECCCc----EEEEcCEEEECCCC---CCc
Confidence 88888888898 899999999998721 22 2456654431 27899999999995 455
Q ss_pred C
Q 010421 161 I 161 (511)
Q Consensus 161 ~ 161 (511)
.
T Consensus 287 ~ 287 (479)
T 2hqm_A 287 L 287 (479)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.5e-05 Score=79.94 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=77.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++. .+. +.+ .+++.+
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l--------------------------------~~~--d~~~~~ 254 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--------------------------------RGF--DQDMAN 254 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS--------------------------------TTS--CHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccc--------------------------------ccC--CHHHHH
Confidence 35799999999999999999 89999999984 220 111 356788
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
++.+..++.++ .++++++|.++....+. ..+...+.+...++++..++.+|.||+|+|. .|+.
T Consensus 255 ~~~~~l~~~GV--~v~~~~~v~~v~~~~~~------------~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~---~p~~ 317 (519)
T 3qfa_A 255 KIGEHMEEHGI--KFIRQFVPIKVEQIEAG------------TPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR---DACT 317 (519)
T ss_dssp HHHHHHHHTTC--EEEESEEEEEEEEEECC------------TTCEEEEEEEESSSSCEEEEEESEEEECSCE---EESC
T ss_pred HHHHHHHHCCC--EEEeCCeEEEEEEccCC------------CCceEEEEEEECCCcEEEEEECCEEEEecCC---cccC
Confidence 88888888898 89999988888763211 0244556665544334346789999999994 5655
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 318 ~ 318 (519)
T 3qfa_A 318 R 318 (519)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.13 E-value=8e-06 Score=84.77 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=77.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+..|..+ .|.+|+|+++...+ +. ..+++.+
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L---------------------------------~~--~D~ei~~ 267 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL---------------------------------RG--FDQQCAV 267 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS---------------------------------TT--SCHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc---------------------------------cc--cchhHHH
Confidence 46899999999999999999 99999999874321 11 1357888
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.++...++.++ .++++++|.+++.. ++...|.+.++. ++.+|.|++|+| ..|++
T Consensus 268 ~l~~~l~~~gi--~~~~~~~v~~~~~~----------------~~~~~v~~~~~~-----~~~~D~vLvAvG---R~Pnt 321 (542)
T 4b1b_A 268 KVKLYMEEQGV--MFKNGILPKKLTKM----------------DDKILVEFSDKT-----SELYDTVLYAIG---RKGDI 321 (542)
T ss_dssp HHHHHHHHTTC--EEEETCCEEEEEEE----------------TTEEEEEETTSC-----EEEESEEEECSC---EEESC
T ss_pred HHHHHHHhhcc--eeecceEEEEEEec----------------CCeEEEEEcCCC-----eEEEEEEEEccc---ccCCc
Confidence 88888999998 89999999999874 344455554443 678999999999 56776
Q ss_pred CC
Q 010421 162 PA 163 (511)
Q Consensus 162 p~ 163 (511)
-.
T Consensus 322 ~~ 323 (542)
T 4b1b_A 322 DG 323 (542)
T ss_dssp GG
T ss_pred cc
Confidence 54
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=9.2e-06 Score=82.41 Aligned_cols=95 Identities=17% Similarity=0.299 Sum_probs=74.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..+ .|.+|+|+|+.+.+. +.+ .+++.+
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll--------------------------------~~~--d~~~~~ 192 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKIN--------------------------------KLM--DADMNQ 192 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCS--------------------------------TTS--CGGGGH
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccc--------------------------------ccc--cchhHH
Confidence 46899999999999999999 899999999976552 111 234566
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. .+.+++++ ++.+|.||+|+|. .|+.
T Consensus 193 ~~~~~l~~~gV--~i~~~~~v~~~~~~--------------------~v~~~~g~-----~~~~D~vl~a~G~---~Pn~ 242 (437)
T 4eqs_A 193 PILDELDKREI--PYRLNEEINAINGN--------------------EITFKSGK-----VEHYDMIIEGVGT---HPNS 242 (437)
T ss_dssp HHHHHHHHTTC--CEEESCCEEEEETT--------------------EEEETTSC-----EEECSEEEECCCE---EESC
T ss_pred HHHHHhhccce--EEEeccEEEEecCC--------------------eeeecCCe-----EEeeeeEEEEece---ecCc
Confidence 77777888888 89999999887641 36666665 7899999999994 5654
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 243 ~ 243 (437)
T 4eqs_A 243 K 243 (437)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=82.53 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=74.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+.. .. ...++.+
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~--~~~~~~~ 195 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY-------------------------------KY--FDKEFTD 195 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT-------------------------------TT--SCHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh-------------------------------hh--hhhhHHH
Confidence 46899999999999999999 7899999999754410 01 1356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+.+..++.++ .++++++|++++.. +++......++ + ++.+|.||+|+|. .|+.
T Consensus 196 ~l~~~l~~~Gv--~i~~~~~v~~i~~~----------------~~~v~~v~~~g---~--~i~~D~vv~a~G~---~p~~ 249 (452)
T 2cdu_A 196 ILAKDYEAHGV--NLVLGSKVAAFEEV----------------DDEIITKTLDG---K--EIKSDIAILCIGF---RPNT 249 (452)
T ss_dssp HHHHHHHHTTC--EEEESSCEEEEEEE----------------TTEEEEEETTS---C--EEEESEEEECCCE---EECC
T ss_pred HHHHHHHHCCC--EEEcCCeeEEEEcC----------------CCeEEEEEeCC---C--EEECCEEEECcCC---CCCH
Confidence 88888888999 89999999999862 23222111222 2 7899999999995 4554
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 250 ~ 250 (452)
T 2cdu_A 250 E 250 (452)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=85.01 Aligned_cols=111 Identities=14% Similarity=0.252 Sum_probs=75.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. + ....++.+
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~--~~~~~~~~ 196 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM--------------------------------T--PVDREMAG 196 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC--------------------------------T--TSCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc--------------------------------h--hcCHHHHH
Confidence 46899999999999999999 889999999976431 1 11356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCc--ccCCCCC-CCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLET--TDSGGNL-LPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+..++.++ .++++++|.+++...+... -..+... ....++...+.+.++. ++.+|.||+|+|..
T Consensus 197 ~l~~~l~~~GV--~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-----~i~~D~vi~a~G~~ 266 (565)
T 3ntd_A 197 FAHQAIRDQGV--DLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGE-----LLETDLLIMAIGVR 266 (565)
T ss_dssp HHHHHHHHTTC--EEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSC-----EEEESEEEECSCEE
T ss_pred HHHHHHHHCCC--EEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCC-----EEEcCEEEECcCCc
Confidence 88888888898 8999999999986210000 0000000 0001344555554433 78999999999953
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-06 Score=90.54 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=32.6
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCcee
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTK 50 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~ 50 (511)
|+|+|||||++||+||..| .|++|+|+|+++.+||.......++..
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~ 49 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFT 49 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEE
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEE
Confidence 6899999999999999999 999999999999999965442334433
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.7e-06 Score=83.46 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=75.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 236 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL--------------------------------RN--FDYDLRQ 236 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999976541 11 1246777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+.+++.++ .++++++|++++.. ++.+.|.+.++. ++.+|.||+|+|..
T Consensus 237 ~l~~~l~~~Gv--~i~~~~~V~~i~~~----------------~~~v~v~~~~g~-----~i~aD~Vi~A~G~~ 287 (484)
T 3o0h_A 237 LLNDAMVAKGI--SIIYEATVSQVQST----------------ENCYNVVLTNGQ-----TICADRVMLATGRV 287 (484)
T ss_dssp HHHHHHHHHTC--EEESSCCEEEEEEC----------------SSSEEEEETTSC-----EEEESEEEECCCEE
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEee----------------CCEEEEEECCCc-----EEEcCEEEEeeCCC
Confidence 78888888898 89999999999873 345667766553 78999999999953
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-06 Score=90.13 Aligned_cols=40 Identities=28% Similarity=0.521 Sum_probs=36.2
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T 52 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAST 52 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCE
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeee
Confidence 46999999999999999999 48999999999999996543
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-06 Score=85.93 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=38.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~GG~w~~ 43 (511)
|...+||+|||||++||++|..| . |.+|+|+|+++.+||.+..
T Consensus 4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~ 49 (399)
T 1v0j_A 4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS 49 (399)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence 33468999999999999999999 6 8999999999999998876
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.5e-06 Score=87.04 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=38.6
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+..+||+|||||++||+||..| .|.+|+|+|+++.+||.+..
T Consensus 9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence 3458999999999999999999 89999999999999998765
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=6.5e-06 Score=81.52 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=71.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. + -.+++.++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~---~~~~~~~~ 188 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL--------------------------------G---LDEELSNM 188 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT--------------------------------T---CCHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec--------------------------------c---CCHHHHHH
Confidence 6899999999999999999 899999999976541 1 13577788
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
+.+..++.++ .++++++|++++. + .|++.++ ++.+|.||+|+|. .|+.
T Consensus 189 l~~~l~~~gV--~i~~~~~v~~i~~-----------------~---~v~~~~g------~i~~D~vi~a~G~---~p~~ 236 (367)
T 1xhc_A 189 IKDMLEETGV--KFFLNSELLEANE-----------------E---GVLTNSG------FIEGKVKICAIGI---VPNV 236 (367)
T ss_dssp HHHHHHHTTE--EEECSCCEEEECS-----------------S---EEEETTE------EEECSCEEEECCE---EECC
T ss_pred HHHHHHHCCC--EEEcCCEEEEEEe-----------------e---EEEECCC------EEEcCEEEECcCC---CcCH
Confidence 8888888898 8899999998863 1 3555432 3899999999995 4554
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.3e-06 Score=83.17 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=38.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
..+||+|||||++|+++|..| .|.+|+|+|+++.+||.|..
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 70 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD 70 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence 357999999999999999999 89999999999999999886
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=98.03 E-value=3e-06 Score=87.79 Aligned_cols=49 Identities=43% Similarity=0.588 Sum_probs=39.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCce
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNST 49 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~ 49 (511)
|++.+||+|||||++||++|..| .|++|+|+|+++.+||.+.....++.
T Consensus 10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~ 60 (504)
T 1sez_A 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGL 60 (504)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTE
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCe
Confidence 44458999999999999999999 89999999999999998766343333
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=81.90 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=72.4
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. ...+ ..
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~-------------------------------~~~l--~~ 226 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM-------------------------------GKIL--PE 226 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT-------------------------------TTTS--CH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc-------------------------------cccC--CH
Confidence 46899999999999999998 268899999864321 0111 14
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
++.+++.+..++.++ .++++++|++++.. ++...|.+.++. ++.+|.||+|+|..
T Consensus 227 ~~~~~~~~~l~~~GV--~v~~~~~V~~i~~~----------------~~~~~v~l~dG~-----~i~aD~Vv~a~G~~ 281 (493)
T 1m6i_A 227 YLSNWTMEKVRREGV--KVMPNAIVQSVGVS----------------SGKLLIKLKDGR-----KVETDHIVAAVGLE 281 (493)
T ss_dssp HHHHHHHHHHHTTTC--EEECSCCEEEEEEE----------------TTEEEEEETTSC-----EEEESEEEECCCEE
T ss_pred HHHHHHHHHHHhcCC--EEEeCCEEEEEEec----------------CCeEEEEECCCC-----EEECCEEEECCCCC
Confidence 677788888888888 89999999999862 333456655543 79999999999954
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.4e-05 Score=84.88 Aligned_cols=66 Identities=11% Similarity=-0.031 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhc--CCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEee
Q 010421 76 YTEILDYLESYAKHF--DVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~--~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
+..+...|.+.+++. ++ .+..++.|+++...++ ..++. -|...+..+++...+.++.||+||
T Consensus 165 G~~i~~~L~~~a~~~~~gV--~i~~~~~v~dLi~~~~-------------~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLAT 229 (662)
T 3gyx_A 165 GESYKVIVAEAAKNALGQD--RIIERIFIVKLLLDKN-------------TPNRIAGAVGFNLRANEVHIFKANAMVVAC 229 (662)
T ss_dssp ETSHHHHHHHHHHHHHCTT--TEECSEEECCCEECSS-------------STTBEEEEEEEESSSSCEEEEECSEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCc--EEEEceEEEEEEEeCC-------------ccceEEEEEEEEcCCCcEEEEEeCEEEECC
Confidence 456667777777776 77 8899999998876310 00132 233444334555678999999999
Q ss_pred cccC
Q 010421 153 GKYG 156 (511)
Q Consensus 153 G~~~ 156 (511)
|.++
T Consensus 230 GG~g 233 (662)
T 3gyx_A 230 GGAV 233 (662)
T ss_dssp CCBC
T ss_pred Cccc
Confidence 9873
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.01 E-value=3e-06 Score=88.14 Aligned_cols=43 Identities=42% Similarity=0.647 Sum_probs=38.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|.+.+||+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 1 m~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t 45 (520)
T 1s3e_A 1 MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT 45 (520)
T ss_dssp --CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence 66778999999999999999999 89999999999999997554
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.5e-05 Score=75.08 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=69.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|.+|+.+|..| .+.+|+++++.+.+. ...++.+
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~------------------------------------~~~~~~~ 206 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ------------------------------------GHGKTAH 206 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS------------------------------------SCSHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC------------------------------------CCHHHHH
Confidence 46899999999999999999 788999999975431 0113445
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+....++.++ .++++++|.+++.. +++ ..|.+.. .+++..++.+|.||+|+|..
T Consensus 207 ~l~~~~~~~gv--~i~~~~~v~~i~~~----------------~~~v~~v~~~~-~~g~~~~i~~D~vi~a~G~~ 262 (360)
T 3ab1_A 207 EVERARANGTI--DVYLETEVASIEES----------------NGVLTRVHLRS-SDGSKWTVEADRLLILIGFK 262 (360)
T ss_dssp SSHHHHHHTSE--EEESSEEEEEEEEE----------------TTEEEEEEEEE-TTCCEEEEECSEEEECCCBC
T ss_pred HHHHHhhcCce--EEEcCcCHHHhccC----------------CCceEEEEEEe-cCCCeEEEeCCEEEECCCCC
Confidence 55566666677 78899999999873 222 2455552 12333478999999999953
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-05 Score=81.66 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=75.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++++|||+|..|+.+|..| .|.+|+++++.+.+. +. ...++.++
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~~ 260 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK--------------------------------LI--KDNETRAY 260 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--------------------------------TC--CSHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc--------------------------------cc--ccHHHHHH
Confidence 7899999999999999999 889999999976541 11 13567788
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc---eEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV---WEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
+.+.+++.++ .++++++|++++..+ ++. +.|.+.++ + .++.+|.||+|+|. .|
T Consensus 261 l~~~l~~~GV--~i~~~~~V~~i~~~~---------------~~~v~~~~v~~~~G---~-~~i~aD~Vv~A~G~---~p 316 (523)
T 1mo9_A 261 VLDRMKEQGM--EIISGSNVTRIEEDA---------------NGRVQAVVAMTPNG---E-MRIETDFVFLGLGE---QP 316 (523)
T ss_dssp HHHHHHHTTC--EEESSCEEEEEEECT---------------TSBEEEEEEEETTE---E-EEEECSCEEECCCC---EE
T ss_pred HHHHHHhCCc--EEEECCEEEEEEEcC---------------CCceEEEEEEECCC---c-EEEEcCEEEECcCC---cc
Confidence 8888888898 899999999998721 232 45555332 1 26899999999994 45
Q ss_pred CC
Q 010421 160 II 161 (511)
Q Consensus 160 ~~ 161 (511)
+.
T Consensus 317 ~~ 318 (523)
T 1mo9_A 317 RS 318 (523)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.3e-05 Score=80.11 Aligned_cols=99 Identities=9% Similarity=0.055 Sum_probs=75.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||+|+.|+.+|..+ .|.+|+++++.+.+. +. ...++.+
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l--------------------------------~~--~~~~~~~ 215 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL--------------------------------SR--FDQDMRR 215 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 889999999976541 11 1346778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEE-EEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVA-VQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
.+.+.+++.++ .++++++|.+++... ++...|. +.++ ++.+|.||+|+|. .|+
T Consensus 216 ~l~~~l~~~Gv--~i~~~~~v~~i~~~~---------------~~~~~v~~~~~g------~i~aD~Vv~a~G~---~p~ 269 (463)
T 4dna_A 216 GLHAAMEEKGI--RILCEDIIQSVSADA---------------DGRRVATTMKHG------EIVADQVMLALGR---MPN 269 (463)
T ss_dssp HHHHHHHHTTC--EEECSCCEEEEEECT---------------TSCEEEEESSSC------EEEESEEEECSCE---EES
T ss_pred HHHHHHHHCCC--EEECCCEEEEEEEcC---------------CCEEEEEEcCCC------eEEeCEEEEeeCc---ccC
Confidence 88888888898 899999999998731 3334454 3332 3899999999995 455
Q ss_pred CC
Q 010421 161 IP 162 (511)
Q Consensus 161 ~p 162 (511)
..
T Consensus 270 ~~ 271 (463)
T 4dna_A 270 TN 271 (463)
T ss_dssp CT
T ss_pred CC
Confidence 44
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=80.15 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=69.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+.. .. ...++.+
T Consensus 148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~~--~~~~~~~ 194 (449)
T 3kd9_A 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR-------------------------------RS--FDKEVTD 194 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch-------------------------------hh--cCHHHHH
Confidence 46899999999999999999 8899999999765411 00 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+..++. + .++++++|.+++.. +.......++. ++.+|.||+|+|..
T Consensus 195 ~l~~~l~~~-v--~i~~~~~v~~i~~~-----------------~~v~~v~~~g~-----~i~~D~Vv~a~G~~ 243 (449)
T 3kd9_A 195 ILEEKLKKH-V--NLRLQEITMKIEGE-----------------ERVEKVVTDAG-----EYKAELVILATGIK 243 (449)
T ss_dssp HHHHHHTTT-S--EEEESCCEEEEECS-----------------SSCCEEEETTE-----EEECSEEEECSCEE
T ss_pred HHHHHHHhC-c--EEEeCCeEEEEecc-----------------CcEEEEEeCCC-----EEECCEEEEeeCCc
Confidence 777777666 6 88999999998752 12222233332 78999999999953
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.7e-06 Score=87.36 Aligned_cols=40 Identities=40% Similarity=0.675 Sum_probs=37.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||++||+||..| .| .+|+|+|+++.+||.+..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t 50 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT 50 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceee
Confidence 47999999999999999999 88 999999999999997654
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=80.79 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=37.3
Q ss_pred hhhccCeEEEEeCceeEEeCC--cEEEcCCceeeccEEEEecCCCCccc
Q 010421 328 SEAEKGKIVFKRASKWWFWKG--GLEFEDNTKLEADVVILCTGYDGKKK 374 (511)
Q Consensus 328 ~~l~~g~v~v~~~~i~~~~~~--~v~~~dG~~~~~D~VI~aTG~~~~~~ 374 (511)
+.+++.+|+++.+.+..++.+ .|.+++|+++.+|.||+|||.+++.+
T Consensus 67 ~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~ 115 (437)
T 3sx6_A 67 HYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFE 115 (437)
T ss_dssp HHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECGG
T ss_pred HHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcc
Confidence 445556778887778888764 48889998899999999999987643
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.1e-05 Score=83.02 Aligned_cols=93 Identities=20% Similarity=0.299 Sum_probs=73.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 232 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM--------------------------------PP--IDYEMAA 232 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc--------------------------------cc--CCHHHHH
Confidence 46899999999999999999 889999999976441 11 2356778
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+..++.++ .++++++|.+++.. .+ .|.+.++. ++.+|.||+|+|..
T Consensus 233 ~l~~~l~~~GV--~i~~~~~v~~i~~~----------------~~--~v~~~~g~-----~i~~D~Vi~a~G~~ 281 (588)
T 3ics_A 233 YVHEHMKNHDV--ELVFEDGVDALEEN----------------GA--VVRLKSGS-----VIQTDMLILAIGVQ 281 (588)
T ss_dssp HHHHHHHHTTC--EEECSCCEEEEEGG----------------GT--EEEETTSC-----EEECSEEEECSCEE
T ss_pred HHHHHHHHcCC--EEEECCeEEEEecC----------------CC--EEEECCCC-----EEEcCEEEEccCCC
Confidence 88888888898 89999999999862 11 36665543 78999999999953
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=8e-06 Score=83.99 Aligned_cols=49 Identities=37% Similarity=0.469 Sum_probs=41.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCCcCccccCC-CcCceec
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDSIGGIWKSC-SYNSTKL 51 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~~GG~w~~~-~~~~~~~ 51 (511)
+.+||+|||||++||++|..| .| .+|+|+|+++.+||.|... .+++..+
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~ 60 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTW 60 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEE
Confidence 357999999999999999999 66 7999999999999998862 4445443
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.6e-06 Score=84.84 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=37.6
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
++.+||+|||||++||+||..| .|++|+|+|+++.+||.+..
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 52 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWT 52 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCE
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceee
Confidence 3467999999999999999999 89999999999999996543
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.9e-06 Score=84.27 Aligned_cols=41 Identities=41% Similarity=0.505 Sum_probs=37.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+.+||+|||||++||+||..| .|++|+|+|+++.+||.+..
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 46 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWT 46 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceec
Confidence 357999999999999999999 89999999999999998764
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=6e-05 Score=73.19 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=68.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|++|+.+|..| .+.+|+++++.+.+. . .. .
T Consensus 173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~--------------------------------~----~~---~ 213 (338)
T 3itj_A 173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLR--------------------------------A----ST---I 213 (338)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--------------------------------S----CH---H
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccC--------------------------------C----CH---H
Confidence 46899999999999999999 788999999975431 0 11 2
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+.+.++.++ .++++++|.+++... ++...|.+.+..+++..++.+|.||+|+|..
T Consensus 214 ~~~~l~~~~gv--~i~~~~~v~~i~~~~---------------~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 270 (338)
T 3itj_A 214 MQKRAEKNEKI--EILYNTVALEAKGDG---------------KLLNALRIKNTKKNEETDLPVSGLFYAIGHT 270 (338)
T ss_dssp HHHHHHHCTTE--EEECSEEEEEEEESS---------------SSEEEEEEEETTTTEEEEEECSEEEECSCEE
T ss_pred HHHHHHhcCCe--EEeecceeEEEEccc---------------CcEEEEEEEECCCCceEEEEeCEEEEEeCCC
Confidence 22333344477 788899999998731 2233477777444444578999999999954
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=2.3e-05 Score=78.77 Aligned_cols=47 Identities=15% Similarity=0.037 Sum_probs=35.7
Q ss_pred hhhccCeEEEEeCceeEEeCC--cEEEcCCce----eeccEEEEecCCCCccc
Q 010421 328 SEAEKGKIVFKRASKWWFWKG--GLEFEDNTK----LEADVVILCTGYDGKKK 374 (511)
Q Consensus 328 ~~l~~g~v~v~~~~i~~~~~~--~v~~~dG~~----~~~D~VI~aTG~~~~~~ 374 (511)
+.+++.+++++.+.+.+++.+ .|.+++|+. +++|.||+|||.++..+
T Consensus 64 ~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 64 EALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp HHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred HHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence 445555678887777788755 588888764 89999999999987643
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.8e-05 Score=76.75 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=67.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|.+|+.+|..| .+.+|+++++.+.+.. +. + .........+.+
T Consensus 166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~-------~~----------------~----d~~~~~~~~~~~ 218 (369)
T 3d1c_A 166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLND-------PD----------------A----DPSVRLSPYTRQ 218 (369)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC-------------------------------------CTTSCCHHHHH
T ss_pred CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCC-------CC----------------C----CCCccCCHHHHH
Confidence 35899999999999999999 7899999999764310 00 0 011112245566
Q ss_pred HHHHHHHhcC-CCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEE-EeCEEEEeecc
Q 010421 82 YLESYAKHFD-VFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY-GFEFLVVCTGK 154 (511)
Q Consensus 82 yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~d~vVlAtG~ 154 (511)
++....++.+ + .++++++|.+++.. ++...|.+.++. .+ .+|.||+|||.
T Consensus 219 ~l~~~l~~~g~v--~~~~~~~v~~i~~~----------------~~~~~v~~~~g~-----~~~~~d~vi~a~G~ 270 (369)
T 3d1c_A 219 RLGNVIKQGARI--EMNVHYTVKDIDFN----------------NGQYHISFDSGQ-----SVHTPHEPILATGF 270 (369)
T ss_dssp HHHHHHHTTCCE--EEECSCCEEEEEEE----------------TTEEEEEESSSC-----CEEESSCCEECCCB
T ss_pred HHHHHHhhCCcE--EEecCcEEEEEEec----------------CCceEEEecCCe-----EeccCCceEEeecc
Confidence 7777777665 7 78889999999752 334556665553 44 46999999995
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=97.89 E-value=6.6e-05 Score=72.09 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|++|+.+|..| .+.+|+++++.+.+. ..+.
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------------------------~~~~--- 184 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK------------------------------------ADQV--- 184 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC------------------------------------SCHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC------------------------------------ccHH---
Confidence 46899999999999999999 778999999865430 0112
Q ss_pred HHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+..++ .++ .++++++|+++... +++. .|.+.+..+++..++.+|.||+|+|..
T Consensus 185 -~~~~l~~~~gv--~v~~~~~v~~i~~~----------------~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 241 (310)
T 1fl2_A 185 -LQDKLRSLKNV--DIILNAQTTEVKGD----------------GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLL 241 (310)
T ss_dssp -HHHHHHTCTTE--EEESSEEEEEEEES----------------SSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred -HHHHHhhCCCe--EEecCCceEEEEcC----------------CCcEEEEEEEECCCCcEEEEEcCEEEEeeCCc
Confidence 2222333 466 78889999999862 2222 467776444555578999999999953
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=9.4e-06 Score=80.84 Aligned_cols=42 Identities=38% Similarity=0.544 Sum_probs=37.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|+ .+||+|||||++|+++|..| .|.+|+|+|+++.+||.|..
T Consensus 1 m~-~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 44 (384)
T 2bi7_A 1 MK-SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 44 (384)
T ss_dssp -C-CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred CC-cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence 53 47999999999999999999 78999999999999999876
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.9e-05 Score=72.55 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=66.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|.+|+.+|..| .+.+|+++++.+.+. ....
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------------------------~~~~--- 192 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR------------------------------------ANKV--- 192 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC------------------------------------SCHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC------------------------------------cchH---
Confidence 46899999999999999999 788999999865330 0112
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+.+.++.++ .++++++|+++... +....|.+.+..+++..++.+|.||+|+|..
T Consensus 193 ~~~~l~~~~gv--~i~~~~~v~~i~~~----------------~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 248 (325)
T 2q7v_A 193 AQARAFANPKM--KFIWDTAVEEIQGA----------------DSVSGVKLRNLKTGEVSELATDGVFIFIGHV 248 (325)
T ss_dssp HHHHHHTCTTE--EEECSEEEEEEEES----------------SSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred HHHHHHhcCCc--eEecCCceEEEccC----------------CcEEEEEEEECCCCcEEEEEcCEEEEccCCC
Confidence 22233334466 78889999999862 2223466664333444578999999999953
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=8.4e-05 Score=79.09 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHhcc------CCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQLR------HHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l~------g~~v~v~e~~~~ 36 (511)
.+||+|||||++||+||..|. |.+|+|+||...
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 369999999999999999883 689999999764
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.7e-06 Score=83.59 Aligned_cols=40 Identities=35% Similarity=0.580 Sum_probs=36.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||++||++|.+| .|. +|+|+|+++.+||....
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t 45 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRS 45 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCE
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEE
Confidence 37999999999999999999 788 99999999999987654
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.84 E-value=4e-05 Score=73.00 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=29.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+.+|..|++.+.+ |+++.+.+
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~-----v~lie~~~ 35 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKN-----ILLVDAGE 35 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC-----EEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCC-----EEEEeCCC
Confidence 4799999999999999999998754 99999864
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=82.67 Aligned_cols=40 Identities=30% Similarity=0.529 Sum_probs=36.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+|||||++||++|..| .| .+|+|+|+++.+||....
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~ 47 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT 47 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence 57999999999999999999 77 999999999999997665
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.1e-05 Score=82.92 Aligned_cols=41 Identities=34% Similarity=0.632 Sum_probs=36.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
..+||+|||||++||++|..| .|++|+|+|+++.+||....
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t 57 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGT 57 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCE
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeee
Confidence 357999999999999999999 89999999999999997655
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00015 Score=70.11 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|..|+.+|..| .+.+|+++++.+.+. ......
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~------------------------------------~~~~~~- 196 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR------------------------------------AHEHSV- 196 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS------------------------------------SCHHHH-
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC------------------------------------ccHHHH-
Confidence 46899999999999999999 778899999865430 011111
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
..+++.++ .++++++|.+++.. ++...|++.+..+++..++.+|.||+|+|..
T Consensus 197 ---~~l~~~gv--~~~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 249 (332)
T 3lzw_A 197 ---ENLHASKV--NVLTPFVPAELIGE----------------DKIEQLVLEEVKGDRKEILEIDDLIVNYGFV 249 (332)
T ss_dssp ---HHHHHSSC--EEETTEEEEEEECS----------------SSCCEEEEEETTSCCEEEEECSEEEECCCEE
T ss_pred ---HHHhcCCe--EEEeCceeeEEecC----------------CceEEEEEEecCCCceEEEECCEEEEeeccC
Confidence 12456777 88889999999862 2345688887655555679999999999954
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=9.6e-05 Score=71.73 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=67.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|..|+.+|..| .+.+|+++++.+.+. ..+.+
T Consensus 159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~------------------------------------~~~~~-- 200 (333)
T 1vdc_A 159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR------------------------------------ASKIM-- 200 (333)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC------------------------------------SCHHH--
T ss_pred CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC------------------------------------ccHHH--
Confidence 46899999999999999999 788999999975430 01111
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCC--CceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGH--PVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+.++.++ .++++++|.+++... + ....|.+.+..+++..++.+|.||+|+|..
T Consensus 201 -~~~~~~~~gv--~i~~~~~v~~i~~~~---------------~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 258 (333)
T 1vdc_A 201 -QQRALSNPKI--DVIWNSSVVEAYGDG---------------ERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHE 258 (333)
T ss_dssp -HHHHHTCTTE--EEECSEEEEEEEESS---------------SSSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred -HHHHHhCCCe--eEecCCceEEEeCCC---------------CccceeeEEEEecCCCceEEEecCEEEEEeCCc
Confidence 1233445666 788899999998721 1 222366665433444578999999999953
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.2e-05 Score=83.03 Aligned_cols=39 Identities=36% Similarity=0.560 Sum_probs=36.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+||+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t 80 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWS 80 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCE
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCccee
Confidence 7999999999999999999 89999999999999997554
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.80 E-value=1.4e-05 Score=80.92 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|++.+||+|||||++|+++|..| .|.+|+|+|+++.+||.+..
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence 66678999999999999999999 89999999999999998765
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.80 E-value=7e-05 Score=76.58 Aligned_cols=102 Identities=27% Similarity=0.343 Sum_probs=71.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +.+ ..+++.+
T Consensus 172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~~-~d~~~~~ 218 (466)
T 3l8k_A 172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL--------------------------------ITL-EDQDIVN 218 (466)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--------------------------------TTS-CCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC--------------------------------CCC-CCHHHHH
Confidence 46899999999999999999 889999999976541 111 0245555
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
.+++..+ + .++++++|++++... ++...|.+.+. +++..++.+|.||+|+|. .|+.
T Consensus 219 ~l~~~l~---v--~i~~~~~v~~i~~~~---------------~~~v~v~~~~~-~G~~~~i~~D~vi~a~G~---~p~~ 274 (466)
T 3l8k_A 219 TLLSILK---L--NIKFNSPVTEVKKIK---------------DDEYEVIYSTK-DGSKKSIFTNSVVLAAGR---RPVI 274 (466)
T ss_dssp HHHHHHC---C--CEECSCCEEEEEEEE---------------TTEEEEEECCT-TSCCEEEEESCEEECCCE---EECC
T ss_pred HHHhcCE---E--EEEECCEEEEEEEcC---------------CCcEEEEEEec-CCceEEEEcCEEEECcCC---Cccc
Confidence 5555443 5 788999999998731 14445655521 233347899999999995 4555
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 275 ~ 275 (466)
T 3l8k_A 275 P 275 (466)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00011 Score=71.02 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=66.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.+. ..+.+.+
T Consensus 155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~------------------------------------~~~~l~~ 198 (319)
T 3cty_A 155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM------------------------------------CENAYVQ 198 (319)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC------------------------------------SCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC------------------------------------CCHHHHH
Confidence 36899999999999999999 778999999864330 0122323
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCC-ceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHP-VWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+.++ .++++++|+++... ++ .-.|.+.+..+++..++.+|.||+|+|..
T Consensus 199 ----~l~~~gv--~i~~~~~v~~i~~~----------------~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (319)
T 3cty_A 199 ----EIKKRNI--PYIMNAQVTEIVGD----------------GKKVTGVKYKDRTTGEEKLIETDGVFIYVGLI 251 (319)
T ss_dssp ----HHHHTTC--CEECSEEEEEEEES----------------SSSEEEEEEEETTTCCEEEECCSEEEECCCEE
T ss_pred ----HHhcCCc--EEEcCCeEEEEecC----------------CceEEEEEEEEcCCCceEEEecCEEEEeeCCc
Confidence 3335677 88999999999872 22 22466664323444468999999999954
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.1e-05 Score=76.15 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=35.4
Q ss_pred hhccCeEEEEeC-ceeEEeCC--cEEEcCCceeeccEEEEecCCCCcc
Q 010421 329 EAEKGKIVFKRA-SKWWFWKG--GLEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 329 ~l~~g~v~v~~~-~i~~~~~~--~v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
.+++.+|+++.+ .+.+++.+ .|.+++|+++.+|.+|+|||.++..
T Consensus 71 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~ 118 (385)
T 3klj_A 71 WYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANK 118 (385)
T ss_dssp HHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred HHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCC
Confidence 344557888877 48888754 4889999999999999999987653
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=9.7e-05 Score=71.17 Aligned_cols=95 Identities=22% Similarity=0.248 Sum_probs=69.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.+. . .+ .
T Consensus 154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~--------------------------------~----~~---~ 194 (323)
T 3f8d_A 154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK--------------------------------A----QP---I 194 (323)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC--------------------------------S----CH---H
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC--------------------------------c----CH---H
Confidence 46899999999999999999 888999999975431 1 11 2
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+++...++.++ .++++++|.+++.. +....|.+.+..+++..++.+|.||+|+|..
T Consensus 195 ~~~~~~~~~gv--~~~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 250 (323)
T 3f8d_A 195 YVETVKKKPNV--EFVLNSVVKEIKGD----------------KVVKQVVVENLKTGEIKELNVNGVFIEIGFD 250 (323)
T ss_dssp HHHHHHTCTTE--EEECSEEEEEEEES----------------SSEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HHHHHHhCCCc--EEEeCCEEEEEecc----------------CceeEEEEEECCCCceEEEEcCEEEEEECCC
Confidence 33444445577 78889999999872 2334577776443444578999999999954
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=8.8e-05 Score=71.26 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=65.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.+. ..+++
T Consensus 143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------------------------~~~~~-- 184 (311)
T 2q0l_A 143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR------------------------------------CAPIT-- 184 (311)
T ss_dssp TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC------------------------------------SCHHH--
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC------------------------------------CCHHH--
Confidence 47899999999999999999 788999999865330 01122
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+...++.++ .++++++|.++.... ++...|.+.+..+++..++.+|.||+|+|..
T Consensus 185 -~~~l~~~~gv--~v~~~~~v~~i~~~~---------------~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 240 (311)
T 2q0l_A 185 -LEHAKNNDKI--EFLTPYVVEEIKGDA---------------SGVSSLSIKNTATNEKRELVVPGFFIFVGYD 240 (311)
T ss_dssp -HHHHHTCTTE--EEETTEEEEEEEEET---------------TEEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred -HHHHhhCCCe--EEEeCCEEEEEECCC---------------CcEeEEEEEecCCCceEEEecCEEEEEecCc
Confidence 2222233566 778899999998621 1222466664333444578999999999953
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=81.80 Aligned_cols=54 Identities=26% Similarity=0.503 Sum_probs=42.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCcCceeccCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSYNSTKLQSH 54 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~~ 54 (511)
|++.+||+|||||++|+++|..| .|. +|+|+|+++.+||.+....+.+..++..
T Consensus 1 ~~~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g 57 (472)
T 1b37_A 1 ATVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELG 57 (472)
T ss_dssp ----CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeC
Confidence 34568999999999999999999 788 8999999999999988755555555443
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00021 Score=75.51 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=72.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||..|+.+|..| .|.+|+++++. .+. +. ..+++.+
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l--------------------------------~~--~d~~~~~ 330 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILL--------------------------------RG--FDQQMAE 330 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS--------------------------------TT--SCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCc--------------------------------Cc--CCHHHHH
Confidence 35799999999999999999 88999999985 220 11 1246677
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEc-----CCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFT-----GSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++.+..++.++ .+++++++.++... .+. ..+...+.+...+ ++...+.+|.||+|+|.
T Consensus 331 ~~~~~l~~~gv--~i~~~~~v~~v~~~~~~~~~~~------------~~~~~~v~~~~~~-g~~~~~~~D~vi~a~G~-- 393 (598)
T 2x8g_A 331 KVGDYMENHGV--KFAKLCVPDEIKQLKVVDTENN------------KPGLLLVKGHYTD-GKKFEEEFETVIFAVGR-- 393 (598)
T ss_dssp HHHHHHHHTTC--EEEETEEEEEEEEEECCBTTTT------------BCCEEEEEEEETT-SCEEEEEESEEEECSCE--
T ss_pred HHHHHHHhCCC--EEEECCeEEEEEeccccccccC------------CCceEEEEEEeCC-CcEEeccCCEEEEEeCC--
Confidence 78888888888 89999888887642 110 0244455543222 33334569999999995
Q ss_pred CCCCC
Q 010421 157 DVPII 161 (511)
Q Consensus 157 ~~p~~ 161 (511)
.|+.
T Consensus 394 -~p~~ 397 (598)
T 2x8g_A 394 -EPQL 397 (598)
T ss_dssp -EECG
T ss_pred -cccc
Confidence 4554
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.73 E-value=2e-05 Score=77.90 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=36.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+||+|||||++|+++|..| .|.+|+|+|+++.+||....
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence 6999999999999999999 78999999999999998765
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.8e-05 Score=81.82 Aligned_cols=41 Identities=39% Similarity=0.597 Sum_probs=37.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
..+||+|||||++||++|..| .|++|+|+|+++.+||.+..
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~ 74 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRT 74 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceee
Confidence 357999999999999999999 89999999999999997643
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.7e-05 Score=72.25 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=65.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|..|+.+|..| .+.+|+++++.+.+. . .+.+
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~--------------------------------~----~~~~-- 196 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR--------------------------------A----SKIM-- 196 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS--------------------------------S----CTTH--
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC--------------------------------c----cHHH--
Confidence 47899999999999999999 788999999875430 0 0011
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+.+.++.++ .++++++|++++.. ++...|.+++..+++..++.+|.||+|+|..
T Consensus 197 -~~~~~~~~gV--~v~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (335)
T 2a87_A 197 -LDRARNNDKI--RFLTNHTVVAVDGD----------------TTVTGLRVRDTNTGAETTLPVTGVFVAIGHE 251 (335)
T ss_dssp -HHHHHHCTTE--EEECSEEEEEEECS----------------SSCCEEEEEEETTSCCEEECCSCEEECSCEE
T ss_pred -HHHHhccCCc--EEEeCceeEEEecC----------------CcEeEEEEEEcCCCceEEeecCEEEEccCCc
Confidence 1223345666 78889999999862 2222466654323333478999999999953
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=8.4e-05 Score=76.61 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=70.3
Q ss_pred CeEEEECCCHHHHHHHHhc--c--------------CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R--------------HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNR 68 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~--------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (511)
..++|||||+.|+.+|..| . +.+|+++|+.+.+-
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il------------------------------ 267 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL------------------------------ 267 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS------------------------------
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc------------------------------
Confidence 3699999999999999877 1 25799999987651
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC-CCC--ceeEEEe
Q 010421 69 DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH-NSN--SIQRYGF 145 (511)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~--~~~~~~~ 145 (511)
+.+ .+++.+++++..++.|+ .++++++|++++.. .+.+... .++ ...++.|
T Consensus 268 --~~~--~~~~~~~~~~~L~~~GV--~v~~~~~v~~v~~~--------------------~~~~~~~~~dg~~~~~~i~a 321 (502)
T 4g6h_A 268 --NMF--EKKLSSYAQSHLENTSI--KVHLRTAVAKVEEK--------------------QLLAKTKHEDGKITEETIPY 321 (502)
T ss_dssp --TTS--CHHHHHHHHHHHHHTTC--EEETTEEEEEECSS--------------------EEEEEEECTTSCEEEEEEEC
T ss_pred --cCC--CHHHHHHHHHHHHhcce--eeecCceEEEEeCC--------------------ceEEEEEecCcccceeeecc
Confidence 222 36788999999999999 89999999998751 1322221 112 1236899
Q ss_pred CEEEEeeccc
Q 010421 146 EFLVVCTGKY 155 (511)
Q Consensus 146 d~vVlAtG~~ 155 (511)
|.||.|+|..
T Consensus 322 d~viwa~Gv~ 331 (502)
T 4g6h_A 322 GTLIWATGNK 331 (502)
T ss_dssp SEEEECCCEE
T ss_pred CEEEEccCCc
Confidence 9999999954
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.67 E-value=2.9e-05 Score=78.87 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=39.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|...+||+|||+|.+|+++|..| .|.+|+++|+++.+||.+..
T Consensus 17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s 61 (475)
T 3p1w_A 17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETAS 61 (475)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccc
Confidence 44568999999999999999999 99999999999999998765
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.9e-05 Score=75.64 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=32.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|++.+||+|||||++|+++|.+| .|.+|+|+|+..
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 55678999999999999999999 899999999965
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00025 Score=73.49 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=69.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|.+|+.+|..| .+.+|+++++.+.+. . . .
T Consensus 355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~--------------------------------~----~----~ 394 (521)
T 1hyu_A 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--------------------------------A----D----Q 394 (521)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC--------------------------------S----C----H
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC--------------------------------c----C----H
Confidence 46899999999999999999 788999999865430 0 0 2
Q ss_pred HHHHHHHh-cCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 82 YLESYAKH-FDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 82 yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
++.+..++ .++ .++++++|+++... +++. .|.+.+..+++..++.+|.||+|+|. .|
T Consensus 395 ~l~~~l~~~~gV--~v~~~~~v~~i~~~----------------~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~---~p 453 (521)
T 1hyu_A 395 VLQDKVRSLKNV--DIILNAQTTEVKGD----------------GSKVVGLEYRDRVSGDIHSVALAGIFVQIGL---LP 453 (521)
T ss_dssp HHHHHHTTCTTE--EEECSEEEEEEEEC----------------SSSEEEEEEEETTTCCEEEEECSEEEECCCE---EE
T ss_pred HHHHHHhcCCCc--EEEeCCEEEEEEcC----------------CCcEEEEEEEeCCCCceEEEEcCEEEECcCC---CC
Confidence 23333334 366 78889999999862 2232 46677654455557899999999995 45
Q ss_pred CC
Q 010421 160 II 161 (511)
Q Consensus 160 ~~ 161 (511)
+.
T Consensus 454 n~ 455 (521)
T 1hyu_A 454 NT 455 (521)
T ss_dssp SC
T ss_pred Cc
Confidence 54
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00026 Score=67.82 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|+.|+.+|..| .+.+|+++++.+.+. ... .
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------~~~---~ 187 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR------------------------------------AAP---S 187 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB------------------------------------SCH---H
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC------------------------------------CCH---H
Confidence 46899999999999999999 788999999875430 011 2
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+++...++.++ .++++++|.+++... +....|.+. ..+++..++.+|.||+|+|..
T Consensus 188 ~~~~~~~~~gv--~~~~~~~v~~i~~~~---------------~~~~~v~~~-~~~g~~~~~~~D~vv~a~G~~ 243 (315)
T 3r9u_A 188 TVEKVKKNEKI--ELITSASVDEVYGDK---------------MGVAGVKVK-LKDGSIRDLNVPGIFTFVGLN 243 (315)
T ss_dssp HHHHHHHCTTE--EEECSCEEEEEEEET---------------TEEEEEEEE-CTTSCEEEECCSCEEECSCEE
T ss_pred HHHHHHhcCCe--EEEeCcEEEEEEcCC---------------CcEEEEEEE-cCCCCeEEeecCeEEEEEcCC
Confidence 33444456677 788899999998731 122336665 223444578999999999954
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00025 Score=76.15 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=69.0
Q ss_pred CCeEEEEC--CCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 4 YSKIAIIG--AGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 4 ~~~v~IIG--aG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
.++|+||| +|..|+.+|..| .|.+|+++++.+.+..... ....
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~---------------------------------~~~~ 569 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN---------------------------------NTFE 569 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG---------------------------------GGTC
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc---------------------------------cchh
Confidence 46799999 999999999999 8899999999765432110 0112
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
...+.+.+++.++ .++.+++|++++. + .+.+....++...++.+|.||+|+|..
T Consensus 570 ~~~l~~~l~~~GV--~i~~~~~V~~i~~-----------------~---~~~v~~~~~~~~~~i~aD~VV~A~G~~ 623 (690)
T 3k30_A 570 VNRIQRRLIENGV--ARVTDHAVVAVGA-----------------G---GVTVRDTYASIERELECDAVVMVTARL 623 (690)
T ss_dssp HHHHHHHHHHTTC--EEEESEEEEEEET-----------------T---EEEEEETTTCCEEEEECSEEEEESCEE
T ss_pred HHHHHHHHHHCCC--EEEcCcEEEEEEC-----------------C---eEEEEEccCCeEEEEECCEEEECCCCC
Confidence 4455666777888 8999999999985 1 133433222233478999999999953
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.44 E-value=7.7e-05 Score=79.71 Aligned_cols=41 Identities=44% Similarity=0.639 Sum_probs=37.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+.++|+|||||++||++|..| .|++|+|+|+++.+||.+..
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 148 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 148 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCE
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence 357999999999999999999 89999999999999997654
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.41 E-value=9.7e-05 Score=80.50 Aligned_cols=41 Identities=44% Similarity=0.639 Sum_probs=37.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
..++|+|||||++||++|..| .|++|+|||+++.+||.+..
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 319 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 319 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceee
Confidence 357999999999999999999 89999999999999997654
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00049 Score=66.00 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=63.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|..|+.+|..| .|.+|+|+++.... ... ...
T Consensus 152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~-----------------------------------~~~-~~~-- 193 (314)
T 4a5l_A 152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF-----------------------------------RAS-KTM-- 193 (314)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC-----------------------------------CSC-HHH--
T ss_pred CCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc-----------------------------------ccc-chh--
Confidence 46899999999999999999 88999999985322 001 111
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCC
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPII 161 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~ 161 (511)
........+. .....+.+..+.... ...-.+.+.+...+...++.+|.|++|+|. .|+.
T Consensus 194 -~~~~~~~~~~--~~~~~~~~~~i~~~~---------------~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~---~pn~ 252 (314)
T 4a5l_A 194 -QERVLNHPKI--EVIWNSELVELEGDG---------------DLLNGAKIHNLVSGEYKVVPVAGLFYAIGH---SPNS 252 (314)
T ss_dssp -HHHHHTCTTE--EEECSEEEEEEEESS---------------SSEEEEEEEETTTCCEEEEECSEEEECSCE---EESC
T ss_pred -hhhhhcccce--eeEeeeeeEEEEeee---------------eccceeEEeecccccceeeccccceEeccc---ccCh
Confidence 1122222233 455666777776531 111235555544445558999999999994 5665
Q ss_pred C
Q 010421 162 P 162 (511)
Q Consensus 162 p 162 (511)
.
T Consensus 253 ~ 253 (314)
T 4a5l_A 253 K 253 (314)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=97.41 E-value=8.7e-05 Score=78.53 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=35.1
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccc
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIW 41 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w 41 (511)
...+||+|||||++|+.+|..| .|++|+|+|+.+..||.+
T Consensus 44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred cccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 3457999999999999999999 899999999998888755
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00084 Score=68.45 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=29.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.++|+|||+|.+|+.+|..| .+.+|+++++++.
T Consensus 197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~ 231 (464)
T 2xve_A 197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 231 (464)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence 47899999999999999999 8899999998754
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.38 E-value=7.3e-05 Score=75.62 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+.+||+|||||++|+++|..| .|++|+|+|+..
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 347999999999999999999 999999999975
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00073 Score=64.63 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=27.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|+.|+-.|..+++.+.+ |+++.+..
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~-----v~lie~~~ 39 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQ-----IALFDNNT 39 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-----EEEEECSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC-----EEEEeCCC
Confidence 699999999999999999988754 99998753
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00034 Score=69.31 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=36.4
Q ss_pred chhhhhccCeEEEEeCc-eeEEeCC-cEEEcCCceeeccEEEEecCCCCc
Q 010421 325 GFFSEAEKGKIVFKRAS-KWWFWKG-GLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~~-i~~~~~~-~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
.+.+.+.+.+++++.+. +.+++.+ .|++.||+++.+|.||.|+|....
T Consensus 112 ~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 112 ALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp HHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTTCH
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCccHH
Confidence 34455566678888775 7777544 577889989999999999999763
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=66.67 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=28.6
Q ss_pred CCeEEEECCCHHHHHHHHhc-c---------------------CC-CcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-R---------------------HH-NPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~---------------------g~-~v~v~e~~~~~ 37 (511)
.++|+|||+|..|+.+|..| . +. +|+|++++..+
T Consensus 147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~ 203 (456)
T 1lqt_A 147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL 203 (456)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence 46899999999999999998 3 44 89999997644
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00089 Score=65.26 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|.+|+.+|..| .+ +|+++.+..
T Consensus 163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~ 195 (357)
T 4a9w_A 163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE 195 (357)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence 46899999999999999999 44 799998863
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00034 Score=72.05 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=31.7
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
...+|+|||||.+|+.+|..|++.+.+ |+++.+.+.
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~-----V~liEk~~~ 126 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGAR-----VVLVEKRIK 126 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESCSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCe-----EEEEEeccc
Confidence 467899999999999999999998754 999999864
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00018 Score=70.45 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=28.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cC------CCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RH------HNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g------~~v~v~e~~~~ 36 (511)
+||+|||||++|+++|.+| .| .+|+|+|++..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 4899999999999999999 66 89999999763
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00098 Score=67.60 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=28.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~ 35 (511)
.++|+|||+|.+|+.+|..| .+.+ |+++++.+
T Consensus 212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~ 246 (447)
T 2gv8_A 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG 246 (447)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence 46899999999999999999 7777 99999864
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.005 Score=58.86 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
.++|+|||||+.|+.+|..| .|.+|+|+|+.+.+
T Consensus 145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 180 (312)
T 4gcm_A 145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL 180 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence 46899999999999999999 78899999997543
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0015 Score=72.64 Aligned_cols=95 Identities=23% Similarity=0.247 Sum_probs=67.3
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDY 82 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (511)
++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+. . .
T Consensus 285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~--------------------------------~------~---- 322 (965)
T 2gag_A 285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS--------------------------------A------A---- 322 (965)
T ss_dssp SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC--------------------------------H------H----
T ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc--------------------------------h------h----
Confidence 6899999999999999999 788999999975430 0 1
Q ss_pred HHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEe--CC--CCceeEEEeCEEEEeecccCCC
Q 010421 83 LESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQT--HN--SNSIQRYGFEFLVVCTGKYGDV 158 (511)
Q Consensus 83 l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~--~~~~~~~~~d~vVlAtG~~~~~ 158 (511)
.+.+++.++ .++++++|+++.... .+....|++.+ .. +++..++.+|.||+|+|. .
T Consensus 323 -~~~l~~~GV--~v~~~~~v~~i~~~~--------------~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~---~ 382 (965)
T 2gag_A 323 -AAQAVADGV--QVISGSVVVDTEADE--------------NGELSAIVVAELDEARELGGTQRFEADVLAVAGGF---N 382 (965)
T ss_dssp -HHHHHHTTC--CEEETEEEEEEEECT--------------TSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE---E
T ss_pred -HHHHHhCCe--EEEeCCEeEEEeccC--------------CCCEEEEEEEeccccCCCCceEEEEcCEEEECCCc---C
Confidence 233566788 899999999998620 02222466654 10 122347899999999994 4
Q ss_pred CCC
Q 010421 159 PII 161 (511)
Q Consensus 159 p~~ 161 (511)
|+.
T Consensus 383 P~~ 385 (965)
T 2gag_A 383 PVV 385 (965)
T ss_dssp ECC
T ss_pred cCh
Confidence 554
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00063 Score=66.45 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
+||+|||||++|+.+|..| .|.+|+|+|++...+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~ 37 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM 37 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence 6999999999999999999 899999999987543
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0013 Score=66.78 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~~ 36 (511)
.++|+|||+|..|+.+|..+ .|.+ |+++++++.
T Consensus 264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~ 299 (456)
T 2vdc_G 264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR 299 (456)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence 46899999999999999988 7774 999998753
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00031 Score=74.63 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC--------CCcEEEcCCC-Cc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH--------HNPVVFEASD-SI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g--------~~v~v~e~~~-~~ 37 (511)
.++|+|||||++||++|..| .| ++|+|||+++ .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 36899999999999999999 66 8999999998 88
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0014 Score=65.30 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=30.2
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.|++.
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~-----V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHR-----VVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCc-----EEEEeCCCC
Confidence 4799999999999999999998765 999999864
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0013 Score=71.00 Aligned_cols=68 Identities=7% Similarity=0.034 Sum_probs=49.4
Q ss_pred CCeEEEEC--CCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHH
Q 010421 4 YSKIAIIG--AGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEI 79 (511)
Q Consensus 4 ~~~v~IIG--aG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (511)
.++|+||| +|..|+.+|..| .|.+|+|+++.+ +...- .+...
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~------------------------------~~~~~--- 573 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYM------------------------------HFTLE--- 573 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHH------------------------------HHTTC---
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccc------------------------------ccccc---
Confidence 46899999 999999999999 889999999975 42100 00000
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEE
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRF 107 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 107 (511)
...+.+..++.++ .++++++|++++.
T Consensus 574 ~~~~~~~l~~~GV--~i~~~~~v~~i~~ 599 (729)
T 1o94_A 574 YPNMMRRLHELHV--EELGDHFCSRIEP 599 (729)
T ss_dssp HHHHHHHHHHTTC--EEECSEEEEEEET
T ss_pred HHHHHHHHHhCCC--EEEcCcEEEEEEC
Confidence 2344555567788 8999999999874
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0021 Score=68.72 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
..++....++.++ .++++++|++++. ++ +.+.. +++..++.+|.||+|+|..
T Consensus 576 ~~~~~~~l~~~GV--~v~~~~~v~~i~~-----------------~~---v~~~~--~G~~~~i~~D~Vi~a~G~~ 627 (671)
T 1ps9_A 576 GWIHRTTLLSRGV--KMIPGVSYQKIDD-----------------DG---LHVVI--NGETQVLAVDNVVICAGQE 627 (671)
T ss_dssp HHHHHHHHHHTTC--EEECSCEEEEEET-----------------TE---EEEEE--TTEEEEECCSEEEECCCEE
T ss_pred HHHHHHHHHhcCC--EEEeCcEEEEEeC-----------------Ce---EEEec--CCeEEEEeCCEEEECCCcc
Confidence 4455666677888 8999999998873 21 44431 2333478999999999953
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0046 Score=62.79 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCeEEEECCCHHHHHHHHhc-c---------------------CC-CcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-R---------------------HH-NPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~---------------------g~-~v~v~e~~~~ 36 (511)
.++|+|||+|..|+.+|..| . +. +|+|++++..
T Consensus 145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~ 200 (460)
T 1cjc_A 145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 200 (460)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence 47899999999999999988 3 45 6999999754
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0011 Score=66.45 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|+-+|..|++.+.+ |+++.+.+.
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~-----V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRR-----VLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 35799999999999999999998765 999998764
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0015 Score=68.41 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=34.8
Q ss_pred hhhhhcc-CeEEEEeCceeEEe--CC---cEEEcCCceeeccEEEEecCCCC
Q 010421 326 FFSEAEK-GKIVFKRASKWWFW--KG---GLEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 326 ~~~~l~~-g~v~v~~~~i~~~~--~~---~v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
+.+.+++ .++++..+.+..+. ++ +|++.+|.++.+|.||+|||-.+
T Consensus 130 L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s 181 (651)
T 3ces_A 130 VRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFL 181 (651)
T ss_dssp HHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred HHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCc
Confidence 4455665 68888777787774 33 36778898899999999999864
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.002 Score=64.18 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|+-+|..|++.+.. |+++.|.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVD-----VDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCC-----EEEEecCCC
Confidence 35899999999999999999998754 999999875
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0021 Score=66.48 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=36.3
Q ss_pred chhhhhccCeEEEEeCc-eeEEeC--C---cEEEcCCceeeccEEEEecCCCCc
Q 010421 325 GFFSEAEKGKIVFKRAS-KWWFWK--G---GLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~~-i~~~~~--~---~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
.+.+.+.+.+++++.+. +.++.. + +|.+.+|+++.+|.||+|||..+.
T Consensus 225 ~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 225 KMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp HHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 34455666678888775 777642 2 277889999999999999999884
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0025 Score=60.30 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHh-cCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAES-NQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~-~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|+.+|..|++. +. +|+++.+.+.
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~-----~V~viEk~~~ 74 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNV-----QVAIIEQSVS 74 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTS-----CEEEEESSSS
T ss_pred cCEEEECccHHHHHHHHHHHHcCCC-----eEEEEECCCC
Confidence 4799999999999999999985 54 4999999763
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0056 Score=63.52 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.++|+|||+|.+|+.+|..| .+.+|+++++.+.
T Consensus 178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 47899999999999999999 7889999999875
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0014 Score=68.65 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=39.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|++.+||+|||+|..|...|..| .|.+|+++|++++.||.|..
T Consensus 5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~ 49 (650)
T 1vg0_A 5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS 49 (650)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence 45679999999999999999999 99999999999999999876
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0011 Score=69.03 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=29.2
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.+.+
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~-----v~iiE~~~ 54 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLT-----VRAFEAAS 54 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CCEEEECchHHHHHHHHHHHhCCCC-----EEEEeCCC
Confidence 4799999999999999999987654 99999865
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0018 Score=67.10 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~ 37 (511)
.+|+||||||++|+.+|.+| .+++|+|+|+....
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~ 53 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP 53 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence 58999999999999999999 56899999997653
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0035 Score=65.49 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=35.5
Q ss_pred chhhhhcc-CeEEEEeCceeEEe--CC---cEEEcCCceeeccEEEEecCCCCc
Q 010421 325 GFFSEAEK-GKIVFKRASKWWFW--KG---GLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 325 ~~~~~l~~-g~v~v~~~~i~~~~--~~---~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
.+.+.+.+ .+|++..+.+..+. ++ +|++.+|.++.+|.||+|||-.+.
T Consensus 128 ~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 128 YMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp HHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred HHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence 34455655 68888777777764 33 377889989999999999998654
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.003 Score=66.17 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.6
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||||.+|+++|..+++.+.+ |.++.+.+
T Consensus 22 yDVIVIGgG~AGl~AAlaLAr~G~k-----VlLIEk~~ 54 (641)
T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLH-----CLLITSDL 54 (641)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC-----EEEEESCG
T ss_pred CCEEEECccHHHHHHHHHHHHCCCc-----EEEEEecc
Confidence 4799999999999999999998765 99999874
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.011 Score=66.10 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=27.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.+|+|||||..|+.+|..+ .|. +|+|+++.+
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 5899999999999999999 776 799999964
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0034 Score=62.62 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=31.2
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+..+|+|||+|.+|+-+|..|++.+.+ |+++.|.+.
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~-----V~v~E~~~~ 57 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSGID-----CDVYEAVKE 57 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCC-----EEEEeCCCC
Confidence 3456899999999999999999998764 999999864
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0082 Score=58.25 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=28.3
Q ss_pred CcEEEECCCCCHHHHHHHHHH---hcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAE---SNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~---~~~~~~~~~Vtl~~R~~ 235 (511)
++|+|||+|.+|+-+|..|++ .+. +|+++.+++
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~-----~V~v~Ek~~ 37 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPL-----YLAVWDKAD 37 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCE-----EEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCc-----eEEEEECCC
Confidence 369999999999999999998 543 599999874
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0014 Score=68.03 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~ 37 (511)
.+|++|||||.+|+.+|.+| .+.+|+|+|+....
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~ 60 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCG
T ss_pred cccEEEECccHHHHHHHHHHhcCCcEEEEecCCCc
Confidence 47999999999999999999 88999999998664
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.013 Score=61.38 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|+-+|..+++.+.+ |+++.+.+.
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~-----V~vlEk~~~ 160 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAK-----VILIEKEPV 160 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 35799999999999999999998765 999998764
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0025 Score=66.39 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
..+|++|||+|++|+.+|.+| .|.+|+|+|+...
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 358999999999999999999 8999999999764
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0033 Score=63.67 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=35.2
Q ss_pred chhhhhccCeEEEEeCc-eeEEe--CCc---EEEcCCceeeccEEEEecCCCC
Q 010421 325 GFFSEAEKGKIVFKRAS-KWWFW--KGG---LEFEDNTKLEADVVILCTGYDG 371 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~~-i~~~~--~~~---v~~~dG~~~~~D~VI~aTG~~~ 371 (511)
.+.+.+++.+|+++.+. +.++. +++ |.+.+|+++.+|.||+|||-..
T Consensus 139 ~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 139 ALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred HHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence 44556666778888764 76664 333 6778887799999999999887
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0047 Score=61.22 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=30.2
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|.-+|..|++.+.+ |+++.|.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGID-----NVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCC-----EEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCC-----EEEEeCCCC
Confidence 3699999999999999999998765 999998763
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=66.09 Aligned_cols=33 Identities=15% Similarity=-0.000 Sum_probs=29.2
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++.+.. |+++.+.+
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~-----v~iiE~~~ 42 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMK-----VLGIEAGE 42 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCC-----EEEEeCCC
Confidence 4799999999999999999987654 99999875
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0033 Score=62.66 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=30.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|+-+|..+++.+.+ |+++.+.+.
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~-----V~vlEk~~~ 38 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKS-----VTVFDNGKK 38 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCC-----EEEEeCCCC
Confidence 3699999999999999999998765 999999764
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0038 Score=62.47 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=29.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||||.+|.-+|..|++.+.+ |+++.|.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~-----V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFK-----VKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCC-----EEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCC-----EEEEeCCC
Confidence 4799999999999999999988765 99999875
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.011 Score=58.84 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=30.6
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|+-+|..|++.+.. |+++.|.+.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGID-----VSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCE-----EEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC-----EEEEeCCCC
Confidence 45899999999999999999988754 999999764
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0035 Score=65.40 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~ 35 (511)
..+|+||||||.||+.+|.+| .+.+|+|+|+..
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 358999999999999999999 478999999976
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0054 Score=64.31 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
...+|+|||||.+|.-+|..|++.+.+ |+++.+.+
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~-----V~LiEr~~ 56 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLGHD-----VTIYERSA 56 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCCCC-----EEEEcCCC
Confidence 346899999999999999999998754 99999874
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.017 Score=56.77 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=29.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.+..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~-----V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEE-----VTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe-----EEEEeCCC
Confidence 4799999999999999999998754 99999864
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0057 Score=55.16 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=31.3
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
...+++|+|||+|.+|...+..|.+.+.. |+++.+.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~-----VtVvap~ 63 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAA-----ITVVAPT 63 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCC-----EEEECSS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCE-----EEEECCC
Confidence 36899999999999999999999998875 9988653
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0046 Score=64.56 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~ 36 (511)
..+|+||||||.||+.+|.+| .+ .+|+|+|+...
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 358999999999999999999 44 79999999765
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0052 Score=63.31 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
..+|++|||+|++|+.+|..| .+.+|+|+|+...
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 458999999999999999999 8999999999754
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0055 Score=63.07 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG 38 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G 38 (511)
..+|++|||+|++|+.+|..| .+.+|+|+|+....+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 357999999999999999999 899999999987553
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0067 Score=63.39 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=29.9
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|.-+|..|++.+.+ |+++.|.+.
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~-----V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVG-----ALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCC-----EEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC-----EEEEcCCCC
Confidence 4799999999999999999998765 999999764
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.066 Score=55.82 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=30.2
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||+|.+|+-+|..|++.+.+ |+++.+.+.
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~-----V~vlEk~~~ 155 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGAN-----VILVDKAPF 155 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCC-----EEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 3799999999999999999998765 999998764
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.021 Score=57.46 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=29.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++.+.. +|+++.+.+
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G~~----~V~vlE~~~ 40 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRGYT----NVTVLDPYP 40 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCC----CEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCC----cEEEEeCCC
Confidence 4799999999999999999998761 399999975
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.02 Score=56.71 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHH-hc-CCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAE-SN-QGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~-~~-~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++ .+ .+ |+++.+.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~-----V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITN-----VAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCC-----EEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCc-----EEEEeCCC
Confidence 479999999999999999999 77 54 99999875
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.034 Score=57.03 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=28.2
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~ 36 (511)
.++|+|||+|.+|+.++..| .+.+|+++-|+..
T Consensus 246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~ 282 (501)
T 4b63_A 246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA 282 (501)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 47899999999999999998 3678999988653
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0052 Score=62.34 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=29.7
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||||.+|+-+|..|++.+.+ |+++.|.+.
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~-----V~vlE~~~~ 40 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLK-----ILLVDSKPW 40 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCC-----EEEECSSCG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC-----EEEEECCCC
Confidence 3799999999999999999987754 999999764
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.083 Score=54.25 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+-+|..+++.+.+ |+++.+.+.
T Consensus 43 DVvVVGaG~AGl~AA~~aa~~G~~-----V~vlEk~~~ 75 (510)
T 4at0_A 43 DVVVAGYGIAGVAASIEAARAGAD-----VLVLERTSG 75 (510)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 699999999999999999998765 999998764
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0052 Score=64.00 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~ 37 (511)
.+|++|||||.+|+.+|.+| .+.+|+|+|+....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 48999999999999999999 57899999997654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.031 Score=59.81 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=30.0
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|||+|.+|+-+|..|++.+.+ |+++.+.+
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~-----V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAV-----VTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCC-----EEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCc-----EEEEeCCC
Confidence 36899999999999999999998765 99999863
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.028 Score=55.64 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=29.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
||+|||+|.+|.=+|..|++.+.. |+++.|++.
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~-----v~v~Er~~~ 35 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIK-----VTIYERNSA 35 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSCS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCC-----EEEEecCCC
Confidence 799999999999999999998765 999999764
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.025 Score=58.28 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=29.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|.-+|..|++.+.+ |+++.+.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~-----V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHR-----VLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCC-----EEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCC-----EEEEccCC
Confidence 4799999999999999999987654 99999876
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.054 Score=56.55 Aligned_cols=35 Identities=9% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|+.+|..+++.+.+ |+++.+.+.
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~-----v~~~e~~~~ 160 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAK-----VILLEKEPI 160 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCC-----EEEECSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 45899999999999999999987754 999998764
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=61.73 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c-CCCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R-HHNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~~~~ 37 (511)
+.+|++|||+|++|+.+|.+| . +.+|+|+|+....
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 358999999999999999999 4 7999999997654
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.036 Score=56.81 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=31.3
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+..+|+|||+|.+|.=+|..|++.+.. |+++.|.+.
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G~~-----v~vlE~~~~ 45 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAGVE-----VVVLERLVE 45 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCC-----EEEEESCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC-----EEEEeCCCC
Confidence 345799999999999999999998765 999999864
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.045 Score=56.10 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=31.0
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|||+|.+|.=+|..|++.+.. |+++.|.+.
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~-----v~vlE~~~~ 46 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVD-----VMVLEQLPQ 46 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC-----EEEEESCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC-----EEEEECCCC
Confidence 35799999999999999999998765 999999864
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.033 Score=59.45 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=29.9
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|||+|.+|+-+|..|++.+.+ |+++.+.+
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~~G~~-----V~vlEk~~ 305 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLRRGWQ-----VTLYCADE 305 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCE-----EEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe-----EEEEeCCC
Confidence 36899999999999999999998754 99999863
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.014 Score=61.06 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~ 37 (511)
.+|++|||+|++|+.+|.+| .+.+|+|+|+....
T Consensus 24 ~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 47999999999999999999 47899999997543
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.024 Score=58.65 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=30.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.|.+.
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~-----v~viEr~~~ 39 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVR-----VLVVERRPG 39 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCC-----EEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCC-----EEEEeCCCC
Confidence 4799999999999999999998765 999999864
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.076 Score=55.00 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=29.6
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.+.+.
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~-----v~iiE~~~~ 50 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRS-----VHVIETAGD 50 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCC-----EEEEeCCCC
Confidence 4799999999999999999988654 999998753
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.034 Score=58.24 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHh------cCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAES------NQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~------~~~~~~~~Vtl~~R~~~ 236 (511)
-+|+|||+|.+|.-+|..|++. +.. |+++.|.+.
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~-----V~vlEk~~~ 75 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLR-----VCLVEKAAH 75 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCC-----EEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCc-----EEEEeCCCC
Confidence 4799999999999999999998 554 999998753
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.71 Score=48.14 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=28.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+-+|..+++.+.+ |+++.+.+
T Consensus 9 DVvVVGaG~AGl~AA~~la~~G~~-----V~vlEK~~ 40 (588)
T 2wdq_A 9 DAVVIGAGGAGMRAALQISQSGQT-----CALLSKVF 40 (588)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-----EEEEESSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCc-----EEEEecCC
Confidence 699999999999999999988765 99999975
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.046 Score=43.36 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=28.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~ 34 (511)
+.++|+|+|+|..|..++..| .| .+|++++++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 346899999999999999999 77 889999985
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.054 Score=45.73 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=29.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+|+|||+|.-|..+|..| .|.+|+++|++.
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 46899999999999999999 889999999864
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.068 Score=44.26 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+|+|||+|..|..+|..| .|++|+++|++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 45799999999999999999 899999999963
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.055 Score=44.42 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|..|...|..| .|++|+++|++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 46899999999999999999 88999999985
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.069 Score=44.92 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=28.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..+|+|+|+|..|...|..| .|++|+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 56899999999999999999 89999999995
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.063 Score=44.39 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=28.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|+|+|..|..+|..| .|++|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 35799999999999999999 89999999985
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.046 Score=55.93 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=29.0
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|+-+|..|++. .+ |+++.+.+.
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~-----V~vie~~~~ 141 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LT-----VALIEERGW 141 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CC-----EEEECTTSS
T ss_pred CCEEEECccHHHHHHHHHHHhc-CC-----EEEEeCCCC
Confidence 5799999999999999999887 54 999998764
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.28 Score=50.67 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=28.2
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+-+|..+++ +.+ |+++.+.+.
T Consensus 10 DVvVVG~G~AGl~aAl~la~-G~~-----V~vlEk~~~ 41 (540)
T 1chu_A 10 DVLIIGSGAAGLSLALRLAD-QHQ-----VIVLSKGPV 41 (540)
T ss_dssp SEEEECCSHHHHHHHHHHTT-TSC-----EEEECSSCT
T ss_pred CEEEECccHHHHHHHHHHhc-CCc-----EEEEECCCC
Confidence 69999999999999999998 654 999998753
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.051 Score=49.95 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=29.7
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|++|.-+|..|++.+.. |+++.|++.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~-----V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQ-----VHLFDKSRG 36 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC-----EEEEECCCC
Confidence 599999999999999999999865 999998753
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.92 Score=47.42 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=28.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhc--CCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESN--QGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~--~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+-+|..|++.+ .+ |+++.+.+
T Consensus 7 DVvIVG~G~AGl~aAl~la~~G~~~~-----V~vlEk~~ 40 (602)
T 1kf6_A 7 DLAIVGAGGAGLRAAIAAAQANPNAK-----IALISKVY 40 (602)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTCC-----EEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCc-----EEEEeCCC
Confidence 6999999999999999999987 54 99999975
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.08 Score=49.75 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=31.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|.+.++|+|||+|.-|...|..| .|++|+++|++.
T Consensus 1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 1 MTGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 54567999999999999999999 899999999864
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.098 Score=50.06 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
|.+.++|+|||+|..|...|..| .|+ +|+++|++.
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 77778999999999999999999 777 899999864
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.1 Score=52.59 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=30.6
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.++++|+|||+|.+|...+..|.+.+.. |+++...
T Consensus 10 l~~~~vlVvGgG~va~~k~~~L~~~ga~-----V~vi~~~ 44 (457)
T 1pjq_A 10 LRDRDCLIVGGGDVAERKARLLLEAGAR-----LTVNALT 44 (457)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBE-----EEEEESS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcCE-----EEEEcCC
Confidence 5789999999999999999999998765 9988653
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.13 Score=42.27 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=28.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|+|+|..|..+|..| .|.+|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35799999999999999999 88999999985
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.11 Score=49.01 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=30.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
|++.++|.|||.|.-|...|..| .|++|++++++..
T Consensus 12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 33456899999999999999999 8899999999754
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.073 Score=54.41 Aligned_cols=49 Identities=8% Similarity=-0.033 Sum_probs=34.5
Q ss_pred CchhhhhccCeEEEEeCc-eeEEe--CC---cEEEcCCceeeccEEEEecCCCCc
Q 010421 324 EGFFSEAEKGKIVFKRAS-KWWFW--KG---GLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 324 ~~~~~~l~~g~v~v~~~~-i~~~~--~~---~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+.+.+++.+++|+.+. |++|. .+ +|+++||+++.+|.||.+++....
T Consensus 225 ~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~ 279 (501)
T 4dgk_A 225 QGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHT 279 (501)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC----
T ss_pred HHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHH
Confidence 445566666677888775 87774 33 378999999999999999887653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=91.60 E-value=0.16 Score=45.70 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=28.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||||..|...+..| .|.+|+|+++.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 47899999999999999999 89999999874
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.15 Score=44.16 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=28.0
Q ss_pred CeEEEECCCHHHHHHHHhc--c-CCCcEEEcCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R-HHNPVVFEAS 34 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~-g~~v~v~e~~ 34 (511)
.+|+|||+|..|..+|..| . |++|+++|++
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIR 72 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 4799999999999999999 7 9999999996
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.17 Score=49.75 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+|+|||+|..|+.+|..+ .|.+|+++|++.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 36899999999999999999 899999999974
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.01 E-value=0.19 Score=48.13 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=29.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
|....+|+|||||..|..+|..| .++ +|+++|.+.
T Consensus 1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 65567999999999999999998 676 899999863
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.66 E-value=0.18 Score=49.01 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=28.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
|++.++|+|||+|..|...|..| .|++|++++++
T Consensus 1 mm~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 1 MIESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 44457999999999999999999 88999999985
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.18 Score=50.61 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
.++|+|||.|.+|+++|..| .|++|+++|.+...
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~ 40 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP 40 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 46899999999999999888 99999999986644
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=90.15 E-value=0.21 Score=41.37 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=27.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|..|...+..| .|.+|++++++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~ 53 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN 53 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46899999999999999999 77889999985
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=90.09 E-value=0.19 Score=48.88 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=29.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+|+|||+|..|+.+|+.+ .|.+|+++|++.
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999999999999999 889999999964
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.19 Score=44.99 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=27.9
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|||+|.-|...|..| .|++|+++|++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 699999999999999999 899999999863
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=89.93 E-value=0.17 Score=46.91 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=28.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.+.|+|||+|-.|...+..| .|.+|+|+++.
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 57899999999999999999 89999999985
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=89.86 E-value=0.24 Score=47.39 Aligned_cols=30 Identities=30% Similarity=0.274 Sum_probs=28.0
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
++|+|||+|.-|...|..| .|.+|++++|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 6899999999999999999 88999999985
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=0.23 Score=41.76 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=31.9
Q ss_pred hccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 193 QLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 193 ~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
....+++|+|+|+|..|..+|..|...+.. |+++.|++.
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~-----V~vid~~~~ 53 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHS-----VVVVDKNEY 53 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESCGG
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCe-----EEEEECCHH
Confidence 446788999999999999999999887654 999988753
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=89.67 E-value=0.23 Score=48.29 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=28.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~ 34 (511)
..+|+|+|||.+|+.+|+.| .|. +|+++|++
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 35899999999999999999 888 89999996
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=0.29 Score=46.61 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=28.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+|+|||||.-|...|..+ .|++|+++|.++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 46899999999999988888 999999999864
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.24 Score=49.91 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=29.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||.|.+|+++|..| .|++|+++|++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 47899999999999999998 999999999864
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=89.08 E-value=0.23 Score=50.14 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+.++|+|+|+|--|...|+.| .|++|+++|+++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 456899999999999999999 889999999865
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=0.25 Score=48.40 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=30.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||+|..|++.|..+++.+.+ |+++.+++.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~-----V~liE~~~~ 35 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVP-----VRLFEMRPK 35 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC-----EEEECCTTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCc-----EEEEeccCC
Confidence 4799999999999999999998765 999998764
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=88.91 E-value=0.22 Score=48.66 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=29.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|++|.-+|..|++.+.+ |+++.|++.
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~-----V~v~Er~~~ 38 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLK-----TLMIEKRPE 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 599999999999999999999865 999999764
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=88.86 E-value=0.27 Score=46.84 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=27.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
++|+|||+|.-|.+.|..| .|.+|++++|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence 5799999999999999999 88999999985
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=0.29 Score=47.54 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~ 34 (511)
..+|+|+|||.+|..+|+.| .|. +|+++|+.
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 46899999999999999999 787 79999996
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=88.70 E-value=0.35 Score=45.70 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=28.3
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
++|+|||+|.-|...|..| .|++|+++|++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 5799999999999999999 899999999863
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=88.54 E-value=0.29 Score=46.20 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
|.+.++|.|||+|.-|...|..| .|++|++++++
T Consensus 1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~ 36 (301)
T 3cky_A 1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLM 36 (301)
T ss_dssp ---CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 66677999999999999999999 88999999885
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=88.52 E-value=0.27 Score=49.64 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=30.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c-CC-CcEEEcCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R-HH-NPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~-g~-~v~v~e~~~~ 36 (511)
..++|+|||+|.-|+..|..| . |+ +|+++|++..
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 346899999999999999999 7 89 9999999865
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=88.34 E-value=0.33 Score=47.94 Aligned_cols=32 Identities=34% Similarity=0.473 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+|+|||+|..|+.++..+ .|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46899999999999999999 888999999864
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=88.29 E-value=0.36 Score=46.35 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=27.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.+|+|||||..|...|..| .|+ +|+++|.+.
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 5899999999999999999 777 899999864
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=88.27 E-value=0.61 Score=47.37 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=31.6
Q ss_pred ceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 95 CVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 95 ~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.++++++|++|+.. ++.+.|++.++. ++.||+||+|+|..
T Consensus 272 ~i~~~~~V~~i~~~----------------~~~v~v~~~~g~-----~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 272 GYVFGCPVRSVVNE----------------RDAARVTARDGR-----EFVAKRVVCTIPLN 311 (495)
T ss_dssp EEESSCCEEEEEEC----------------SSSEEEEETTCC-----EEEEEEEEECCCGG
T ss_pred EEEeCCEEEEEEEc----------------CCEEEEEECCCC-----EEEcCEEEECCCHH
Confidence 58999999999973 345777665543 68999999999965
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=88.26 E-value=0.21 Score=46.39 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=31.2
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.++++|+|||+|.+|...+..|.+.+.. |+++...
T Consensus 11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~-----VtViap~ 45 (274)
T 1kyq_A 11 LKDKRILLIGGGEVGLTRLYKLMPTGCK-----LTLVSPD 45 (274)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCE-----EEEEEEE
T ss_pred cCCCEEEEECCcHHHHHHHHHHHhCCCE-----EEEEcCC
Confidence 5789999999999999999999998865 9998764
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=88.22 E-value=0.34 Score=48.69 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
++|+|||+|.-|+..|..| .|++|+++|++..
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN 36 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 5899999999999999999 8999999998753
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=88.21 E-value=0.34 Score=45.62 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=28.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
++|+|||+|.-|...|..| .|.+|++++|+.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 5799999999999999999 789999999963
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=88.14 E-value=0.38 Score=46.23 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=28.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
|+ .++|+|||+|.-|...|..| .|.+|++++++
T Consensus 1 M~-~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 1 MS-LTRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp -C-CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CC-CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 53 46899999999999999999 88999999984
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=88.00 E-value=0.32 Score=49.25 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=30.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~ 35 (511)
|.+.++|+|||+|..|+..|..| . |++|+++|++.
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 55557899999999999999999 5 79999999864
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=87.98 E-value=0.37 Score=46.76 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=29.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|.+.++|.|||.|.-|...|..| .|++|++++++.
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 33457899999999999999999 899999999864
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=87.96 E-value=0.41 Score=47.00 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=28.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+|+|||+|..|+.++..+ .|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999999999999999 888999999864
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=87.94 E-value=0.43 Score=42.37 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=29.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.++|.|||+|.-|.+.|..| .|.+|++++++..
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 36899999999999999999 8899999998754
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=87.86 E-value=0.23 Score=49.66 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=30.2
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..++|+|||+|.+|.-+|..|++.+.. |+++.+++
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~-----V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVD-----VTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCE-----EEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCe-----EEEEcCCC
Confidence 346899999999999999999998765 99999876
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=87.83 E-value=0.26 Score=48.96 Aligned_cols=51 Identities=14% Similarity=-0.070 Sum_probs=37.9
Q ss_pred CCchhhhhccCeEEEEeCc-eeEEeC--CcEEEcCCceeeccEEEEecCCCCcc
Q 010421 323 PEGFFSEAEKGKIVFKRAS-KWWFWK--GGLEFEDNTKLEADVVILCTGYDGKK 373 (511)
Q Consensus 323 ~~~~~~~l~~g~v~v~~~~-i~~~~~--~~v~~~dG~~~~~D~VI~aTG~~~~~ 373 (511)
.+.+.+.+++.+++++.+. |.++.. ++++..+|+++++|.||+|+|.....
T Consensus 192 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~~~~ 245 (421)
T 3nrn_A 192 IDELERIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVRETV 245 (421)
T ss_dssp HHHHHHHHHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHHHHH
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHHHHH
Confidence 3455566677678888875 888864 34656788889999999999987543
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=87.63 E-value=0.46 Score=45.54 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=28.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
.++|+|||||..|...|..| .|+ +|+++|.+.
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 35899999999999999888 777 899999864
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.47 E-value=0.52 Score=39.36 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=29.7
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.++|+|+|+|..|..++..|.+.+.. |+++.|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~-----V~vid~~~ 36 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQN-----VTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCC-----EEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCC-----EEEEECCC
Confidence 46899999999999999999987754 99998864
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=87.47 E-value=0.43 Score=45.32 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|.|||+|.-|...|..| .|++|++++++.
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 46899999999999999999 899999999864
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=87.40 E-value=0.45 Score=44.44 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=27.7
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|||+|.-|...|..| .|++|++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 699999999999999999 889999999864
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=87.26 E-value=0.42 Score=45.23 Aligned_cols=30 Identities=30% Similarity=0.304 Sum_probs=27.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
++|+|||+|.-|...|..| .|++|++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999 78999999985
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=87.24 E-value=0.37 Score=47.39 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=29.2
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||+|.+|+-+|..|++.+.+ |+++.+.+
T Consensus 6 DVvIIGaG~~Gl~~A~~La~~G~~-----V~vlE~~~ 37 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAERGHR-----VLVLERHT 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-----EEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-----EEEEeCCC
Confidence 699999999999999999998765 99999975
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=87.19 E-value=0.44 Score=45.40 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=27.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~ 34 (511)
.++|+|||+|..|...|..| .|+ +|+++|++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~ 41 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 41 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 35899999999999999999 777 89999985
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=87.18 E-value=0.31 Score=49.68 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=30.6
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..++|+|||+|.+|+.+|..|++.+.+ |+++.+++
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~-----v~vlE~~~ 66 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQ-----VTVLEASE 66 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCE-----EEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe-----EEEEECCC
Confidence 357899999999999999999998754 99998864
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.31 Score=47.79 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=29.7
Q ss_pred CcEEEECCCCCHHHHHHHHHHh--cCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAES--NQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~--~~~~~~~~Vtl~~R~~~ 236 (511)
++|+|||+|.+|+-+|..|++. +. +|+++.|.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~-----~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLW-----AIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTS-----EEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCC-----CEEEEECCCC
Confidence 3699999999999999999998 65 4999998764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.03 E-value=0.51 Score=45.78 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|.-|.+.|..| .|++|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 35899999999999999999 889999999963
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=0.34 Score=47.26 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=29.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.+..
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~-----V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKN-----TALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCc-----EEEEeCCC
Confidence 4799999999999999999998765 99999864
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.01 E-value=0.5 Score=44.93 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=28.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|.|||+|.-|...|..| .|++|++++++.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 36899999999999999999 889999999853
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=86.98 E-value=0.29 Score=48.58 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=29.1
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
++|+|||+|.+|+-+|..|++.+.+ |+++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~-----V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHE-----VEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCE-----EEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-----eEEEeCCC
Confidence 3799999999999999999998754 99999874
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=86.88 E-value=0.41 Score=47.55 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=30.2
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhc-CCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESN-QGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~-~~~~~~~Vtl~~R~~ 235 (511)
+.++|+|||+|.+|.-.|..|++.+ .+ |+++.+++
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~-----v~v~E~~~ 40 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHD-----YTILERTD 40 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCC-----EEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCc-----EEEEECCC
Confidence 3468999999999999999999887 54 99998865
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=86.79 E-value=0.36 Score=46.65 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=29.6
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.+.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~-----V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHE-----VLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCe-----EEEEeCCC
Confidence 3699999999999999999998765 99999975
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.47 E-value=0.46 Score=42.46 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=29.4
Q ss_pred CCCCCeEEEECC-CHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGA-GVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGa-G~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|++.++|+|+|| |.-|...+..| .|.+|+++.|+.
T Consensus 1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 665679999995 99999999999 889999999964
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.36 E-value=0.49 Score=45.09 Aligned_cols=32 Identities=38% Similarity=0.534 Sum_probs=27.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~ 35 (511)
..+|+|||+|..|..+|..| .++ +++++|.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 46899999999999999999 665 799999853
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=86.27 E-value=0.39 Score=46.92 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=29.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.+..
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~-----V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVK-----TLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCe-----EEEEeCCC
Confidence 3699999999999999999998754 99999865
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.27 E-value=0.3 Score=47.41 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=28.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||+|.+|+-+|..|++.+.+ |+++.+.+
T Consensus 4 dvvIIG~Gi~Gl~~A~~La~~G~~-----V~vle~~~ 35 (372)
T 2uzz_A 4 DLIIIGSGSVGAAAGYYATRAGLN-----VLMTDAHM 35 (372)
T ss_dssp EEEESCTTHHHHHHHHHHHHTTCC-----EEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-----EEEEecCC
Confidence 699999999999999999998765 99999874
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.19 E-value=0.57 Score=47.46 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=29.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..++|.|||+|.-|...|..| .|++|+++|++.
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 356899999999999999999 899999999864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=86.13 E-value=0.65 Score=43.21 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=29.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|+ .++|+|+|+|.-|...+..| .|++|+++.|+.
T Consensus 1 M~-~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 1 MS-LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp -C-CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 54 36899999999999999999 899999999863
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=86.05 E-value=0.53 Score=47.68 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=29.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|.-|+..|..| .|++|+++|++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 46899999999999999999 799999999864
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=86.04 E-value=0.4 Score=46.23 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=28.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCC-CCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQG-PEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~-~~~~~Vtl~~R~~ 235 (511)
+|+|||+|.+|+=+|..|++.+.. ....+|+++.+..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 699999999999999999998700 0002599999874
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.04 E-value=0.3 Score=49.39 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=29.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
++|+|||||.+|+=+|..|++.+.. .+|+++.+++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~---~~V~vlEa~~ 37 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCP---PKVVLVESSE 37 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSC---CEEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCC---CcEEEEeCCC
Confidence 5899999999999999999988651 1499998864
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=86.04 E-value=0.56 Score=44.48 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=27.8
Q ss_pred CeEEEECCCHHHHHHHHhc-cCCCcEEEcCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL-RHHNPVVFEAS 34 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~ 34 (511)
++|+|||+|.-|...|..| .|.+|++++|+
T Consensus 3 mkI~IiGaGa~G~~~a~~L~~g~~V~~~~r~ 33 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLSLYHDVTVVTRR 33 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHhcCCceEEEECC
Confidence 5899999999999999999 88999999985
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=85.84 E-value=0.54 Score=38.55 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=29.9
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..++|+|+|+|..|..+|..|.+.+.. |+++.+++
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~-----V~~id~~~ 39 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKK-----VLAVDKSK 39 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCC-----EEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-----EEEEECCH
Confidence 357899999999999999999988765 99998865
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=85.83 E-value=0.49 Score=48.20 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=35.2
Q ss_pred CchhhhhccCeEEEEeCc-eeEEeCC--cEEEcCCceeeccEEEEecCC
Q 010421 324 EGFFSEAEKGKIVFKRAS-KWWFWKG--GLEFEDNTKLEADVVILCTGY 369 (511)
Q Consensus 324 ~~~~~~l~~g~v~v~~~~-i~~~~~~--~v~~~dG~~~~~D~VI~aTG~ 369 (511)
+.+.+.+.+.+++++.+. |.++..+ .|++.||+++.+|.||+++-.
T Consensus 226 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 226 IAVANTLPKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHTSCGGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHhcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCCH
Confidence 334455677788888775 8888644 488999999999999998754
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.82 E-value=0.53 Score=44.83 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=28.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEAS 34 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~ 34 (511)
|++..+|+|||||..|.+.|..| .++ +++++|..
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~ 39 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 56667999999999999999999 454 68999884
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=85.77 E-value=0.62 Score=44.17 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=27.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
++|+|||||..|...|..| .++ +++++|.+.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 5899999999999999998 665 899999853
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=85.73 E-value=0.61 Score=45.37 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=28.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..+|+|||+|..|..++..+ .|.+|++++++
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~ 199 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN 199 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36899999999999999999 88899999985
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.67 E-value=0.63 Score=44.22 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=28.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~ 34 (511)
.++|+|||+|..|..+|..| .++ +++++|..
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 46899999999999999998 788 89999985
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=85.62 E-value=0.72 Score=43.65 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|.|||.|.-|...|..| .|++|++++++.
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999999999999999 899999999863
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=85.60 E-value=0.42 Score=46.69 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=30.8
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
....+|+|||+|.+|+-+|..|++.+.+ |+++.++
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~-----V~VlE~~ 76 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHD-----VTILEAN 76 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCE-----EEEECSC
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCc-----EEEEecc
Confidence 3467999999999999999999998754 9999987
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=85.58 E-value=0.61 Score=44.04 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|.|||+|.-|...|..| .|++|++++++.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 46899999999999999999 899999999863
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=85.50 E-value=0.28 Score=49.33 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=29.6
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCC-CCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQG-PEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~-~~~~~Vtl~~R~~ 235 (511)
++|+|||+|.+|+-+|..|++.+.. ....+|+++.+++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~ 44 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence 5799999999999999999998710 0012499998864
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=85.43 E-value=0.66 Score=45.04 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
++|+|||||..|..++..+ .|++++++|.++.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6899999999999999998 9999999998654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=85.39 E-value=0.71 Score=44.06 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=28.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
..+|+|||||..|.+.|..| .++ +++++|...
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 46899999999999999988 677 899999864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.26 E-value=0.48 Score=45.13 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~ 35 (511)
.++|.|||+|.-|...|..| .| ++|++++++.
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 46899999999999999999 88 8999999863
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=85.26 E-value=0.45 Score=47.31 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=28.7
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||+|.+|+-+|..|++.+.+ |+++.+++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~-----V~vlE~~~ 34 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKK-----VLLLEGGE 34 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCe-----EEEEecCC
Confidence 699999999999999999998765 99998854
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=85.24 E-value=0.42 Score=43.19 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=27.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
...|+|+|+|..|...|..| .|+ |+++|++.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~ 41 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN 41 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence 46899999999999999999 778 99999863
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=85.23 E-value=0.68 Score=42.23 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|.|||+|.-|...|..| .|++|++++++.
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 46899999999999999999 899999999864
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=85.19 E-value=0.53 Score=45.60 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=29.1
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+=+|..|++.+. +|+++.+..
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~-----~V~vle~~~ 39 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGY-----SVHILARDL 39 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-----EEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-----EEEEEeccC
Confidence 479999999999999999998865 499999864
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=85.17 E-value=0.67 Score=44.34 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=28.1
Q ss_pred CCCeEEEECCCHHHHH-HHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLA-AVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~-aa~~l--~g~~v~v~e~~~ 35 (511)
..++|.|||.|.+|++ +|..| .|++|++.|++.
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3578999999999997 66666 999999999863
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.10 E-value=0.34 Score=43.46 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=28.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEE-EcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVV-FEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v-~e~~~ 35 (511)
.++|.|||+|.-|...|..| .|++|++ ++++.
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~ 57 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP 57 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 36899999999999999999 8899988 88753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=85.10 E-value=0.35 Score=38.02 Aligned_cols=36 Identities=19% Similarity=0.080 Sum_probs=29.6
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+++|+|+|+|..|..++..|...+. .+|+++.|++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~----~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSN----YSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSS----EEEEEEESCH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCC----ceEEEEeCCH
Confidence 45789999999999999999998762 2488888864
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=84.99 E-value=0.6 Score=43.71 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=28.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
++|.|||+|.-|...|..| .|++|++++++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 5799999999999999999 889999999864
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.96 E-value=0.66 Score=44.53 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=28.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
+..+|.|||+|.-|...|..| .|++|++++++
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 357899999999999999999 88999999985
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=0.48 Score=48.06 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=30.2
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+.++|+|||+|.+|+-+|..|++.+.+ |+++.+++
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~-----v~v~E~~~ 44 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYK-----VTVLEART 44 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC-----EEEEeccC
Confidence 457899999999999999999987654 99998764
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=84.81 E-value=0.54 Score=38.36 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=29.3
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.++++|+|+|+|..|..++..|.+.+.. |+++.|++
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~-----v~~~d~~~ 39 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHE-----VLAVDINE 39 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCC-----CEEEESCH
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCE-----EEEEeCCH
Confidence 3567899999999999999999987654 88888754
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=84.77 E-value=0.67 Score=39.94 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=31.2
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHh-cCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAES-NQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~-~~~~~~~~Vtl~~R~~ 235 (511)
..+++|+|+|.|..|..+|..|.+. +.. |+++.|++
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~-----V~vid~~~ 73 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRARYGKI-----SLGIEIRE 73 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHHHCSC-----EEEEESCH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccCCe-----EEEEECCH
Confidence 4567999999999999999999988 765 99998865
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=0.71 Score=45.87 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=29.5
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~ 36 (511)
.++|+|||+|.-|+..|..| .|++|+++|++..
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~G~~V~~~D~~~~ 69 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQNHEVVALDIVQA 69 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred CCEEEEECcCHHHHHHHHHHHcCCeEEEEecCHH
Confidence 35899999999999999999 9999999998654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=84.59 E-value=0.71 Score=37.87 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..++|+|+|.|..|..+|..|.+.+.. |+++.+++
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~-----v~vid~~~ 40 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIP-----LVVIETSR 40 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCC-----EEEEESCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC-----EEEEECCH
Confidence 346899999999999999999987765 99999875
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=84.44 E-value=0.75 Score=44.99 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=28.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|..|..+|..+ .|.+|+++|++
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~ 200 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDIN 200 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46899999999999999999 88899999985
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=84.39 E-value=0.53 Score=38.23 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=28.4
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+.+|+|+|+|..|..+|..|.+.+. +|+++.|++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-----~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-----DIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-----EEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-----eEEEEECCH
Confidence 4689999999999999999998765 489888754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=84.38 E-value=0.68 Score=42.39 Aligned_cols=30 Identities=30% Similarity=0.394 Sum_probs=27.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC-CcEEEcCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH-NPVVFEAS 34 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~ 34 (511)
.+|+|||+|-.|..+|+.| .|+ +++|+|+.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d 64 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 64 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 5899999999999999999 887 79999985
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=84.35 E-value=0.78 Score=43.79 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=27.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~ 34 (511)
..+|+|||+|..|.++|..| .++ +++++|.+
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN 39 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 46899999999999999998 665 79999985
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=84.35 E-value=0.8 Score=40.78 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=27.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
++|+|||+|..|...|..| .|++|++++++
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~ 60 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRN 60 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5799999999999999999 88899999985
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=84.34 E-value=0.46 Score=46.15 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=29.1
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..++|+|||+|.+|+-+|..|+ .+. +|+++.+.+
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G~-----~V~vlE~~~ 41 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AHG-----RVVVLEREA 41 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TTS-----CEEEECSSS
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CCC-----CEEEEECCC
Confidence 3478999999999999999999 454 499999874
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=0.73 Score=43.95 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cC----CCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RH----HNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g----~~v~v~e~~~ 35 (511)
+.++|.|||+|.-|...|..| .| .+|++++++.
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence 345899999999999999999 77 7899998853
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.21 E-value=0.82 Score=46.09 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|.-|...|..| .|++|+++|++.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 35799999999999999999 899999999863
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=84.12 E-value=0.75 Score=43.52 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=26.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCC--CcEEEcCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHH--NPVVFEAS 34 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~ 34 (511)
+|+|||||..|...|..| .|+ +|+++|.+
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~ 34 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD 34 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 799999999999999998 777 89999985
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=84.10 E-value=0.89 Score=39.64 Aligned_cols=34 Identities=38% Similarity=0.474 Sum_probs=29.6
Q ss_pred CCCCCeEEEECC-CHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGA-GVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGa-G~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|+. ++|+|+|| |.-|..+++.| .|.+|+++.|+.
T Consensus 1 M~~-~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 1 MAV-KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CCC-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 543 68999998 99999999999 889999999863
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=84.09 E-value=0.92 Score=43.22 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=27.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
..+|+|||+|..|.+.|..| .++ +++++|...
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 46899999999999999988 666 899999864
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=84.06 E-value=0.74 Score=42.73 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=28.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|+|||.-|...+..| .|++|+++.|+
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~ 37 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRN 37 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESC
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcC
Confidence 46899999999999999999 89999999885
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.01 E-value=0.8 Score=44.64 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|..|..+|..+ .|.+|+++|++
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~ 198 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVN 198 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 36899999999999999999 88999999985
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=83.95 E-value=0.78 Score=45.68 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
..+|+|||.|..||.+|..| .|++|+.+|-+..
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~ 55 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS 55 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 36899999999999999999 8999999997653
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=83.94 E-value=0.85 Score=45.67 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=28.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
++|+|||+|.-|...|..| .|++|+++|++.
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 87 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE 87 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence 6899999999999999999 999999999964
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=83.91 E-value=0.57 Score=44.39 Aligned_cols=29 Identities=28% Similarity=0.163 Sum_probs=26.6
Q ss_pred CeEEEECCCHHHHHHHHhc--c-----C-CCcEEEcC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--R-----H-HNPVVFEA 33 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~-----g-~~v~v~e~ 33 (511)
++|+|||+|.-|...|..| . | ++|+++++
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 4899999999999999999 6 8 89999987
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=83.90 E-value=0.53 Score=45.81 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=27.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|||+|.-|...|..| .|++|++++++.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 899999999999999999 788999999864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=83.83 E-value=0.8 Score=45.38 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=29.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
...|+|||.|..|..+|..| .|++|+++|++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~ 37 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP 37 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 35799999999999999999 899999999964
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=83.82 E-value=0.79 Score=43.68 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=28.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
++|.|||+|.-|...|..| .|++|++++++.
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 5899999999999999999 899999999863
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=83.81 E-value=0.59 Score=44.06 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=26.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
|.++|.+||-|.-|...|.+| .|++|++++++..
T Consensus 4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~ 39 (297)
T 4gbj_A 4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS 39 (297)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 346899999999999999999 9999999998654
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=83.75 E-value=0.98 Score=46.21 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
...+..++..+. .++++++|++|+.. ++.|+|.+.+++ ++.||+||+|++..
T Consensus 216 ~l~~~l~~~lg~--~i~~~~~V~~i~~~----------------~~~v~v~~~~g~-----~~~ad~VI~a~p~~ 267 (520)
T 1s3e_A 216 QVSERIMDLLGD--RVKLERPVIYIDQT----------------RENVLVETLNHE-----MYEAKYVISAIPPT 267 (520)
T ss_dssp HHHHHHHHHHGG--GEESSCCEEEEECS----------------SSSEEEEETTSC-----EEEESEEEECSCGG
T ss_pred HHHHHHHHHcCC--cEEcCCeeEEEEEC----------------CCeEEEEECCCe-----EEEeCEEEECCCHH
Confidence 444555565665 79999999999873 456777665554 78999999999975
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=83.61 E-value=0.87 Score=45.55 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
..+++|||.|.-|+..|..| .|++|+++|++...
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k 43 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK 43 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 46899999999999999999 89999999997653
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=83.56 E-value=0.62 Score=45.99 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=29.2
Q ss_pred CcEEEECCCCCHHHHHHHHHHh--cCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAES--NQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~--~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++. +.+ |+++.+..
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~-----V~vlE~~~ 71 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRS-----LLLVEEGG 71 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSC-----EEEECSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCe-----EEEEeCCC
Confidence 4799999999999999999998 754 99999864
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=83.34 E-value=0.68 Score=46.52 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=29.5
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.+++
T Consensus 12 ~dvvVIGaG~~GL~aA~~La~~G~~-----V~vlE~~~ 44 (453)
T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDGKK-----VLHIDKQD 44 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCe-----EEEEeCCC
Confidence 5799999999999999999998765 99999875
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=83.13 E-value=1 Score=41.58 Aligned_cols=31 Identities=32% Similarity=0.374 Sum_probs=28.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++++|||+|-+|-+++..| .|.+|+|+.|.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt 150 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRS 150 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36899999999999999999 78889999885
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=83.07 E-value=0.61 Score=47.73 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=29.4
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhc-CCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESN-QGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~-~~~~~~~Vtl~~R~~ 235 (511)
.++|+|||+|.+|+-.|..|++.+ .+ |+++.+++
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~-----V~VlEa~~ 42 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQD-----CLVLEARD 42 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCS-----EEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCC-----EEEEeCCC
Confidence 358999999999999999999987 54 99998764
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=82.87 E-value=0.72 Score=45.42 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=29.3
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|||+|.+|+-+|..|++.+.+ |+++.+++
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~-----v~v~E~~~ 62 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQR-----VLIVDRRP 62 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCc-----eEEEeccC
Confidence 35799999999999999999988654 99998864
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=82.76 E-value=0.79 Score=46.13 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=28.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|..|...+..| .|.+|+|++++
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 47899999999999999999 89999999985
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=82.73 E-value=0.85 Score=44.94 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=29.3
Q ss_pred CCcEEEECCCCCHHHHHHHHHHh-cCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAES-NQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~-~~~~~~~~Vtl~~R~~ 235 (511)
..+|+|||+|.+|+-+|..|++. +.+ |+++.+++
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~-----v~v~E~~~ 41 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKR-----VLVLERRP 41 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCC-----EEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCC-----EEEEeCCC
Confidence 35799999999999999999998 654 99998764
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=82.58 E-value=0.71 Score=43.17 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=28.3
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
++|.|||+|.-|...|..| .|++|++++++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 4799999999999999999 899999999864
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=82.53 E-value=0.66 Score=45.52 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=28.8
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|.-+|..|++.+. +|+++.+++
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~-----~v~v~E~~~ 36 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGH-----QVHIIDQRD 36 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-----EEEEEESSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-----cEEEEEecC
Confidence 479999999999999999998764 499999864
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=82.52 E-value=0.84 Score=43.33 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~ 34 (511)
.++|.|||+|.-|...|..| .|+ +|++++++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 36899999999999999999 888 99999985
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=0.71 Score=46.18 Aligned_cols=31 Identities=13% Similarity=-0.040 Sum_probs=28.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhc-CCCCCCcEEEEEe
Q 010421 198 KKVAVVGFKKSAIDLAKECAESN-QGPEGQPCTMIVR 233 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~-~~~~~~~Vtl~~R 233 (511)
.+|+|||+|.+|+-+|..|++.+ .+ |+++.+
T Consensus 24 ~dVvIIGgGiaGls~A~~La~~G~~~-----V~vlE~ 55 (448)
T 3axb_A 24 FDYVVVGAGVVGLAAAYYLKVWSGGS-----VLVVDA 55 (448)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCSC-----EEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCc-----EEEEcc
Confidence 47999999999999999999988 54 999998
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=0.79 Score=45.83 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=27.7
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|||+|..|+..|..| .|++|+++|++.
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 699999999999999999 889999999864
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=82.45 E-value=0.71 Score=47.08 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.3
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.+|+|||+|.+|+-+|..|++.+.+ |+++.+.+
T Consensus 4 ~DVvIIGgGi~G~~~A~~La~~G~~-----V~llE~~~ 36 (501)
T 2qcu_A 4 KDLIVIGGGINGAGIAADAAGRGLS-----VLMLEAQD 36 (501)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCC-----EEEEECCC
Confidence 3699999999999999999998765 99999864
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=82.36 E-value=0.82 Score=45.12 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=29.9
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCc-EEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQP-CTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~-Vtl~~R~~~ 236 (511)
.+|+|||+|.+|+-+|..|++.+ .+ |+++.|.+.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G-----~~~v~v~E~~~~ 39 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAG-----IGKVTLLESSSE 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-----CSEEEEEESSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-----CCeEEEEECCCC
Confidence 47999999999999999999875 36 999999864
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=82.33 E-value=1 Score=42.89 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~ 34 (511)
..+|+|||||..|..+|..| .++ +++++|.+
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 46899999999999999998 554 68999874
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.27 E-value=1.1 Score=42.34 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=28.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|..|..+|+.| .|.+|+++++.
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~ 189 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARS 189 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence 46899999999999999999 88899999985
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=82.22 E-value=1 Score=42.64 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=26.7
Q ss_pred eEEEECCCHHHHHHHHhc--c--CCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--R--HHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~ 35 (511)
+|+|||+|..|...|..| . +.+|+++|++.
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 799999999999999999 3 67899999964
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=82.20 E-value=1.1 Score=41.65 Aligned_cols=32 Identities=28% Similarity=0.177 Sum_probs=28.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC---CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH---NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~---~v~v~e~~~ 35 (511)
.++|.|||+|--|.+.|..| .|+ +|++++++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 46899999999999999999 777 899999863
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=82.18 E-value=0.78 Score=43.85 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCCCCeEEEECC-CHHHHHHHHhc--cCC-------CcEEEcCC
Q 010421 1 MANYSKIAIIGA-GVSGLAAVKQL--RHH-------NPVVFEAS 34 (511)
Q Consensus 1 m~~~~~v~IIGa-G~aGl~aa~~l--~g~-------~v~v~e~~ 34 (511)
|.+.++|+|+|| |..|...+..| .|+ +|+++|+.
T Consensus 1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~ 44 (327)
T 1y7t_A 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP 44 (327)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence 767779999997 99999999999 564 78888874
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=82.15 E-value=1 Score=41.30 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC----CCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH----HNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g----~~v~v~e~~~ 35 (511)
.++|.|||+|.-|...|..| .| .+|++++++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~ 41 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK 41 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence 45899999999999999999 67 6899998863
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.01 E-value=1.1 Score=42.08 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=28.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||+|..|..+|+.| .|.+|+++++.
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~ 187 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARE 187 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECC
Confidence 46899999999999999999 88899999985
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.99 E-value=1 Score=42.89 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
+.++|+|||+|.-|.+.|..| .|.+|+++ ++
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=81.94 E-value=0.97 Score=43.42 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=29.6
Q ss_pred CcEEEECCCCCHHHHHHHHHHh--cCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAES--NQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~--~~~~~~~~Vtl~~R~~~ 236 (511)
.+|+|||+|.+|+-+|..|++. +. +|+++.+.+.
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~-----~V~LiEk~~~ 115 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDL-----RITIVEAGVA 115 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTS-----CEEEEESSSS
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCC-----EEEEEeCCCc
Confidence 4799999999999999999997 54 4999998753
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=81.93 E-value=1.1 Score=42.12 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=27.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~ 34 (511)
.++|+|||+|-.|..+|..| .|. +|+|++|.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~ 174 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRT 174 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 46899999999999999999 787 89999885
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=81.91 E-value=0.75 Score=47.36 Aligned_cols=48 Identities=21% Similarity=0.087 Sum_probs=35.1
Q ss_pred chhhhhccCeEEEEeCceeEEeC--C----cEEEcCCceeeccEEEEecCCCCc
Q 010421 325 GFFSEAEKGKIVFKRASKWWFWK--G----GLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 325 ~~~~~l~~g~v~v~~~~i~~~~~--~----~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
.+.+.+.+.+++++.+.|.++.. + +|++++|+++.+|.||.|+|....
T Consensus 170 ~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 170 FLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp HHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred HHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 34445555678887777777753 3 366788888999999999999653
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=81.89 E-value=1.1 Score=41.42 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++++|+|+|-.|.++|..| .|.+|++++|+
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~ 151 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 151 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence 46899999999999999999 88899999885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 511 | ||||
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 6e-18 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 8e-17 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 1e-06 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 5e-15 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 2e-07 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 2e-07 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 4e-07 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 1e-06 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 2e-06 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 2e-06 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 5e-06 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 6e-06 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 7e-06 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 3e-05 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 5e-05 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 9e-05 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 1e-04 | |
| d1i8ta1 | 298 | c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu | 2e-04 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 4e-04 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 0.001 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 0.001 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 0.001 | |
| d1kifa1 | 246 | c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N | 0.001 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 0.001 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 0.001 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 0.002 | |
| d2jfga1 | 93 | c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D- | 0.002 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 0.002 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 0.002 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 0.002 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 0.004 |
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 82.2 bits (202), Expect = 6e-18
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDF 63
+ ++GAG SGL A+ +LR + V E + +GG+W Y + +Y ++
Sbjct: 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFS 68
Query: 64 P---WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRF 107
+ S EIL Y+ A FD+ + F++ V F
Sbjct: 69 EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAF 115
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 79.3 bits (194), Expect = 8e-17
Identities = 50/316 (15%), Positives = 90/316 (28%), Gaps = 74/316 (23%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRH----HNPVVFEASDSIGGIW--------------- 41
+ KIAIIGAG SGL K L +FE S GG+W
Sbjct: 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPST 60
Query: 42 ------------------KSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYL 83
S Y + + + D + FP I +Y
Sbjct: 61 NPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKP-QTLQFPHRHTIQEYQ 119
Query: 84 ESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS-IQR 142
YA+ ++ + V+++ W V + + S I +
Sbjct: 120 RIYAQPLL--PFIKLATDVLDIEKKDGS----------------WVVTYKGTKAGSPISK 161
Query: 143 YGFEFLVVCTGKYG----------DVPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAAS 192
F+ + +C G Y P + + + + +G +H++ +
Sbjct: 162 DIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPT 221
Query: 193 QLLKDKKVAVVGFKKSAID---LAKECAESNQGPEGQPCTMIVRTTHWTV----PHYRIW 245
+ VV F S LA+ + + P + +++ Y
Sbjct: 222 LAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHSL 281
Query: 246 GLPFFMFYSTRFSQFL 261
P Y + +
Sbjct: 282 DYPKDATYINKLHDWC 297
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 50/281 (17%), Positives = 93/281 (33%), Gaps = 21/281 (7%)
Query: 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH----WTVPHYRIWGLPFFMFY 253
+K+A++G S + AK + T+ R W LP
Sbjct: 5 RKIAIIGAGPSGLVTAKALLAEKAFDQ---VTLFERRGSPGGVWNYTSTLSNKLPVPSTN 61
Query: 254 STRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEED 313
++ + G + + L L+ + Y + P ++
Sbjct: 62 PILTTEPIVGPAALPVYPSPL---YRDLQTNTPIELMGYCDQSFKP-QTLQFPHRHTIQE 117
Query: 314 YASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKK 373
Y + + I K S +KG +K D V +C G+
Sbjct: 118 YQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVP 177
Query: 374 KLKAF--LPEPFQSLLEHPSGLL--------PLYRGTIHPLIPNMAFVGYIESVSNLHTA 423
+P P + L+ P L +Y+ + P +AFVG V T+
Sbjct: 178 YTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTS 237
Query: 424 ELRSIWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFY 464
+ ++ +L+R+ + KLPS E+ L+ + M + + Y
Sbjct: 238 QAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMY 278
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 72.5 bits (176), Expect = 5e-15
Identities = 31/244 (12%), Positives = 63/244 (25%), Gaps = 41/244 (16%)
Query: 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECA 217
VP +P FP G + F G + H+ ++ + ++V V+G S I ++ + A
Sbjct: 1 VPQLPNFP---GLKDFAGNLYHTGNWPHEPVD-----FSGQRVGVIGTGSSGIQVSPQIA 52
Query: 218 ESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLL 277
+ T P + Y+ + + + L
Sbjct: 53 KQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSAL 112
Query: 278 LSPLRRGVSKFIESYLLWKLPL--------------------LKYGLKPDHPFEEDYASC 317
V + + ++ ++ E
Sbjct: 113 EVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERL 172
Query: 318 QMAIMPEG------------FFSEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVIL 365
P G F+ + A G+ + E D ++L
Sbjct: 173 VPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSERE-YELDSLVL 231
Query: 366 CTGY 369
TG+
Sbjct: 232 ATGF 235
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 16/126 (12%)
Query: 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDF 63
+A++G G+SGLA L R + V+ E+S +GG + +H +
Sbjct: 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG----------AVGTHALA----GY 47
Query: 64 PWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPA 123
+ + + + S L +
Sbjct: 48 LVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLAS 107
Query: 124 GHPVWE 129
Sbjct: 108 DILPLG 113
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (119), Expect = 2e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
K+ IIG+GVSGLAA +QL+ + + EA D +GG
Sbjct: 7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 49.8 bits (117), Expect = 4e-07
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
++A+IGAGVSGLAA +L+ N VFEA GG
Sbjct: 3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 38
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.2 bits (111), Expect = 1e-06
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 6 KIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIW 41
+I ++G+G +G + L + ++E G+
Sbjct: 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV 42
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 47.5 bits (112), Expect = 2e-06
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGGIWKSCSYNSTKLQSH 54
KI I+GAG SG +QL H + + D IGG + T + H
Sbjct: 4 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVH 54
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
+ I+GAG++GL+A L H V EAS+ GG
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 67
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 46.1 bits (107), Expect = 5e-06
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 6 KIAIIGAGVSGLAAVKQLR---HHNPVVFEASDSIGGIWKSCSYNSTKL 51
++ ++GAG+SG++A K+L + ++ EA+D IGG ++ +
Sbjct: 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINV 50
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 6e-06
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 7 IAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
+ ++G G+SG+AA K L N VV EA D +GG
Sbjct: 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG 36
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 42.7 bits (100), Expect = 7e-06
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 161 IPAFPN-NKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAES 219
IP ++ + G VLHS + + + + V VVG SA DL +
Sbjct: 1 IPNIKGLDEYAKAVPGSVLHSSLFREPEL------FVGESVLVVGGASSANDLVRHLT-- 52
Query: 220 NQGPEGQPCTMIVRTTHWTVPHYRIWGLP 248
P + + + + +P
Sbjct: 53 ---PVAKHPIYQSLLGGGDIQNESLQQVP 78
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.1 bits (100), Expect = 3e-05
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 9/100 (9%)
Query: 6 KIAIIGAGVSGLAAVKQL---------RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRS 56
IAI+G+G S A L + E + G+ +S S
Sbjct: 4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSIS 63
Query: 57 DYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCV 96
P G E + E ++ V V
Sbjct: 64 KQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAV 103
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 42.9 bits (100), Expect = 5e-05
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 10/113 (8%)
Query: 5 SKIAIIGAGVSGLAAVKQLRH---HNPVVFEASDSIGG-IWKSCSYNSTKLQSHRSDYEF 60
+ + ++GAG +GL+A ++ + E S S GG W S + +
Sbjct: 34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFL 93
Query: 61 TDFPWPNRDDPGFPSYT----EILDYLESYAKHFDVFKCVRFNSKVVEVRFTG 109
+ + + + +V + ++ G
Sbjct: 94 DEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKG 144
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 41.8 bits (97), Expect = 9e-05
Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 20/169 (11%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG-------GIWKSCSYNSTKL 51
M+ YS+ IIGAG +GL QL + VF+ IG G + + +
Sbjct: 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTP 60
Query: 52 QSHRSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSL 111
+ S R + + K C ++VE+ +
Sbjct: 61 AHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKS--- 117
Query: 112 ETTDSGGNLLPAGHPVWEVA-------VQTHNSNSIQRYGFEFLVVCTG 153
E G +L V +V V+ + ++ + L+V TG
Sbjct: 118 ECDKYGAKILL-RSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG 165
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 2/109 (1%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDY 58
M + ++G G++ + + + + GG S + + +
Sbjct: 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 59 EFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRF 107
+ RD ++ + + KVVE F
Sbjct: 63 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSF 111
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (96), Expect = 2e-04
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDF 63
I+G+G+ G +L + +V E + IGG + ++ + + T+
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62
Query: 64 PWPN 67
+
Sbjct: 63 KYIW 66
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 27/219 (12%), Positives = 56/219 (25%), Gaps = 15/219 (6%)
Query: 7 IAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC----SYNSTKLQSHRSDYEF 60
+ +IG G SGL A N ++ + + +G + +L
Sbjct: 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64
Query: 61 TDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVR--FTGSLETTDSGG 118
+ +I+ + E+ R + + L G
Sbjct: 65 PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLG 124
Query: 119 NLLPAGHPVWEV-----AVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFP-NNKGPEV 172
+ PV + + + + +V+ G VP + E
Sbjct: 125 VKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS-VPQTGSTGDGYAWAEK 183
Query: 173 FEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAID 211
+ KE + + K + F +D
Sbjct: 184 AGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLD 222
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.8 bits (89), Expect = 0.001
Identities = 32/187 (17%), Positives = 49/187 (26%), Gaps = 10/187 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRHHN--PVVFEASDSIGGIWKSC----SYNSTK-LQSHRSDY 58
++AIIGAG SGL + L V+ E + + L+ D
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63
Query: 59 EFTD--FPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDS 116
+ I S K V+ ++E R T
Sbjct: 64 RMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQ 123
Query: 117 GGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGD-VPIIPAFPNNKGPEVFEG 175
+ V R +++ C G +G IPA G G
Sbjct: 124 AAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERMQHGRLFLAG 183
Query: 176 QVLHSID 182
H +
Sbjct: 184 DAAHIVP 190
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 38.2 bits (87), Expect = 0.001
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 6 KIAIIGAGVSGLAAVKQLR---HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTD 62
KIA++GAG + ++ L + + +FE + +GG+ S +
Sbjct: 6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 65
Query: 63 FPWPN 67
Sbjct: 66 KDLGV 70
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 0.001
Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 22/209 (10%)
Query: 7 IAIIGAGVSGLAAVKQLRHH--NPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
IG G G+A++ + + + EA +GG + K + +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTCVNVGCVPKK--VMWHAAQIREAI 61
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAG 124
D GF ++ F+ + + ++ T + G
Sbjct: 62 HMYGPDYGF----------DTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG 111
Query: 125 HPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAFPNNKGPEVFEGQVLHSIDYC 184
+ A + + G P P P N + V +
Sbjct: 112 FARFVDAKTLEVNGETITADHILIAT-----GGRPSHPREPANDNINLEAAGVKTNEKGY 166
Query: 185 KLDKEAASQLLKDKKVAVVGFKKSAIDLA 213
+ + Q + + VG A++L
Sbjct: 167 IVVDKY--QNTNIEGIYAVGDNTGAVELT 193
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 38.3 bits (88), Expect = 0.001
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFE-------------ASDSIGGIWKSCSYNSTK 50
++ +IGAGV GL+ + R+H+ + +D G+W+ + +
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSN 61
Query: 51 LQSHRSDYEFTDFPWPNRDDPGFP 74
Q + + ++ + P
Sbjct: 62 PQEANWNQQTFNYLLSHIGSPNAA 85
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (88), Expect = 0.001
Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 8/156 (5%)
Query: 7 IAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
+ IIG G +G A + N E +GG + +K + S
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHT 67
Query: 65 WPNRDDPGFPSYTEILDYLESYAKHFDVFKCV------RFNSKVVEVRFTGSLETTDSGG 118
+ +I AK V + +KV + GS E
Sbjct: 68 EAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIR 127
Query: 119 NLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154
G + +I + G+
Sbjct: 128 VTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGR 163
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 38.1 bits (87), Expect = 0.001
Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDY 58
M + ++ ++G+GV GL++ L + ++ + S S +
Sbjct: 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV----SSQTFA---SPWAGA 55
Query: 59 EFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVF 93
+T F
Sbjct: 56 NWTPFMTLTDGPRQAKWEESTFKKWVELVPTGHAM 90
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 37.5 bits (86), Expect = 0.002
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 27/99 (27%)
Query: 6 KIAIIGAGVSGLAAVKQLR--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDF 63
+A++GAG +GLA H +F+A IGG +
Sbjct: 45 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ----------------- 87
Query: 64 PWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKV 102
PG + E L Y + V ++ N V
Sbjct: 88 ------IPGKEEFYETLRYYRRMIEVTGV--TLKLNHTV 118
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Score = 35.4 bits (81), Expect = 0.002
Identities = 12/93 (12%), Positives = 20/93 (21%), Gaps = 16/93 (17%)
Query: 2 ANYS--KIAIIGAGVSGLAAVKQLRHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYE 59
A+Y + IIG G++GL+ V + + +
Sbjct: 1 ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPR-------VMDTRMTPPGLDKLPEAVERH 53
Query: 60 FTDFPWPNRDD-------PGFPSYTEILDYLES 85
PG L
Sbjct: 54 TGSLNDEWLMAADLIVASPGIALAHPSLSAAAD 86
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 37.8 bits (86), Expect = 0.002
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 6 KIAIIGAGVSGLAAVKQLRH--HNPVVFEASDSIGG 39
+IA++G +SGL A LR + V+E S
Sbjct: 6 RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS 41
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 37.8 bits (86), Expect = 0.002
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDY 58
M + + +IG G+ G A L + N +FE+ G + S + L +H
Sbjct: 1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR---TTSAAAGMLGAHAECE 57
Query: 59 EFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRF 98
E F Y S +
Sbjct: 58 ERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFK 97
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.002
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 7 IAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFP 64
+ ++G G++ L + + D GG S + + + ++ +
Sbjct: 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 67
Query: 65 WPNRDDPGF 73
D +
Sbjct: 68 SKFGKDRDW 76
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (85), Expect = 0.004
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGG 39
S + I+GAG SGL+A + + E+S + GG
Sbjct: 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 89
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 511 | |||
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.97 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.95 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.82 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.62 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.59 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.55 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.4 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.4 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.4 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.39 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.29 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.28 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.26 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.25 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.23 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.22 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.22 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.21 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.2 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.2 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.19 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.18 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.18 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.15 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.15 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.15 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.15 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.13 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.12 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.12 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.12 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.11 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.11 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.1 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.08 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.07 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.07 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.07 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.06 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 99.06 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.05 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.05 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.04 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.04 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.02 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.0 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.99 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.98 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.98 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.98 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.96 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.96 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.95 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.95 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.94 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.94 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.92 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.92 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.92 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.91 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.91 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.9 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.89 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.88 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.87 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.86 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.84 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.82 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.81 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.8 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.8 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.8 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.79 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.78 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.78 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.75 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.73 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.72 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.71 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.7 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.68 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.67 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.65 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.62 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.6 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.55 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.54 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.53 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.48 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.47 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.47 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.45 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.43 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.41 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.39 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.38 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.37 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.36 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.36 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.32 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.3 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.25 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.25 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.23 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.21 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.17 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.12 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 98.11 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.09 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.07 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.05 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.04 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.03 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.0 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.0 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.98 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.91 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 97.9 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 97.89 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.87 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.86 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.84 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.82 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 97.81 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 97.75 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.75 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 97.72 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.71 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.71 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.71 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.69 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.62 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.61 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.61 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 97.51 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 97.48 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.47 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.42 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 97.38 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.34 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.23 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.1 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 97.02 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.01 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 96.94 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 96.93 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 96.84 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.83 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 96.83 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.8 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 96.75 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 96.73 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 96.71 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 96.67 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.58 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.51 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 96.47 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 96.3 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.15 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 96.07 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.05 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 95.77 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.66 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.65 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 95.17 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.13 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.08 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.04 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 94.96 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.9 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.86 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.86 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.78 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.7 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.6 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.6 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.53 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.31 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 94.29 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.19 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.08 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.07 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.95 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 93.84 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 93.72 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.54 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.51 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.39 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.27 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 93.26 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.06 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 92.85 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 92.73 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 92.46 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 91.9 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.87 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 91.57 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 91.56 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 91.4 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 91.28 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 90.98 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 90.37 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.99 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 89.78 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 89.75 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 89.55 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 89.49 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 89.46 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 89.31 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 89.16 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 89.15 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 88.98 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 88.88 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 88.88 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 88.73 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 88.61 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 88.6 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 88.58 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 88.5 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 88.44 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 88.32 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.31 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 88.25 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 88.09 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 87.88 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 87.79 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 87.68 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 87.63 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 87.62 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 87.55 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 87.3 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 87.3 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 87.08 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 87.08 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 86.79 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 86.65 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 86.6 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.45 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 86.07 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 85.64 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 85.55 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 85.43 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.13 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 85.04 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 84.92 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 84.6 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 84.55 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 84.42 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 84.05 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 84.01 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 83.92 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 83.72 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 83.58 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 83.56 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 83.07 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 82.86 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 82.73 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 82.7 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 82.69 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 82.43 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 82.41 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 82.38 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 81.76 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 81.72 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 81.58 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 81.5 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 81.39 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 80.97 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 80.22 |
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.97 E-value=1.1e-29 Score=248.95 Aligned_cols=145 Identities=26% Similarity=0.465 Sum_probs=120.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCCCcCccccCCCcCc----------------------------
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASDSIGGIWKSCSYNS---------------------------- 48 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~---------------------------- 48 (511)
|++.++|+|||||+|||++|+.| .+ .+|+||||++.+||+|..+.+++
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 80 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 80 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccc
Confidence 88889999999999999999998 44 58999999999999998755444
Q ss_pred -----eeccCCCCccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCC
Q 010421 49 -----TKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPA 123 (511)
Q Consensus 49 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~ 123 (511)
+..+++...+.|++++++.+. ..|+++.++.+|++.+++.++. +|+|+++|++|++.
T Consensus 81 ~~y~~l~~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~yl~~~~~~~~~--~I~~~t~V~~v~~~--------------- 142 (335)
T d2gv8a1 81 PLYRDLQTNTPIELMGYCDQSFKPQT-LQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKK--------------- 142 (335)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTC-CSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEE---------------
T ss_pred ccchhhhcCCcHhhhhhhhhcCCccc-ccCCchHHHHHHHHHHHHHhhh--cccCceEEEEEEec---------------
Confidence 344555556677888888774 8899999999999999998766 89999999999984
Q ss_pred CCCceEEEEEeCCCC-ceeEEEeCEEEEeecccCCCCCCCCCC
Q 010421 124 GHPVWEVAVQTHNSN-SIQRYGFEFLVVCTGKYGDVPIIPAFP 165 (511)
Q Consensus 124 ~~~~~~v~~~~~~~~-~~~~~~~d~vVlAtG~~~~~p~~p~~~ 165 (511)
+++|+|++++.+.+ +.....||+||+|||++ +.|++|.++
T Consensus 143 -~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~-s~p~~~~~~ 183 (335)
T d2gv8a1 143 -DGSWVVTYKGTKAGSPISKDIFDAVSICNGHY-EVPYTGYLY 183 (335)
T ss_dssp -TTEEEEEEEESSTTCCEEEEEESEEEECCCSS-SSBCCCBCC
T ss_pred -CCEEEEEEEecCCCCeEEEEEeeEEEEccccc-ccceecccc
Confidence 67899999987643 44467899999999999 588877654
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.95 E-value=5.8e-29 Score=237.95 Aligned_cols=142 Identities=23% Similarity=0.415 Sum_probs=124.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCC----CCCCCCCCCh
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWP----NRDDPGFPSY 76 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (511)
...||+|||||++||++|++| .|++|+|||+++.+||+|..+.||+++++++...+.++..+.+ ++ ...++++
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~-~~~~p~~ 84 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNW-TERYASQ 84 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCC-CBSSCBH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCC-ccccCcc
Confidence 457999999999999999999 9999999999999999999999999999999999999877533 33 4788999
Q ss_pred HHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 77 TEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 77 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
+++.+|++.+++++++.++|+|+++|+++++. + .++.|+|++.++. +.++|+||+|||..
T Consensus 85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~d--e------------~~~~W~V~~~~~~-----~~~~~~~i~atG~l- 144 (298)
T d1w4xa1 85 PEILRYINFVADKFDLRSGITFHTTVTAAAFD--E------------ATNTWTVDTNHGD-----RIRARYLIMASGQL- 144 (298)
T ss_dssp HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEE--T------------TTTEEEEEETTCC-----EEEEEEEEECCCSC-
T ss_pred chHHHHHHHHHHHcCCcccccCCcEEEEEEEe--c------------CCCceeecccccc-----ccccceEEEeeccc-
Confidence 99999999999999999899999999999983 2 2788999988775 78999999999988
Q ss_pred CCCCCCCCC
Q 010421 157 DVPIIPAFP 165 (511)
Q Consensus 157 ~~p~~p~~~ 165 (511)
+.|.+|.++
T Consensus 145 s~~~~p~~~ 153 (298)
T d1w4xa1 145 SDALTGALF 153 (298)
T ss_dssp CCCTTHHHH
T ss_pred ccccCCccc
Confidence 466665443
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.82 E-value=3.9e-20 Score=170.66 Aligned_cols=194 Identities=20% Similarity=0.240 Sum_probs=118.7
Q ss_pred CCCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 158 VPIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 158 ~p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
.|++|++| |++.|.|+++||++|... ...++||+|+|||+|.||+|+|.+++..+.+ ++++.|++.|
T Consensus 1 vP~iP~~p---G~e~F~G~v~HS~~~~~~-----~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~-----~~~~~~~~~~ 67 (235)
T d1w4xa2 1 VPQLPNFP---GLKDFAGNLYHTGNWPHE-----PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE-----LFVFQRTPHF 67 (235)
T ss_dssp CCCCCCCT---TGGGCCSEEEEGGGCCSS-----CCCCBTCEEEEECCSHHHHHHHHHHHHHBSE-----EEEEESSCCC
T ss_pred CCCCCCCC---ChhhCCCcEEecCcCCCC-----CCCCCCCEEEEECCCccHHHHHHHHHhhhcc-----ccccccccce
Confidence 48899999 999999999999999531 2468999999999999999999999998765 9999999999
Q ss_pred eecCcccCCccchhh-------hhhhhhhhh------cCCCc------hhHHHHHHHhh----h-------------hhh
Q 010421 238 TVPHYRIWGLPFFMF-------YSTRFSQFL------HGSPN------QSLLRTLLCLL----L-------------SPL 281 (511)
Q Consensus 238 ~~p~~~~~g~p~~~~-------~~~r~~~~~------~~~~~------~~~~~~~~~~~----~-------------~~~ 281 (511)
+.+.......+.... ......... ..... .......+... . ...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (235)
T d1w4xa2 68 AVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDA 147 (235)
T ss_dssp EEECCCCBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHH
T ss_pred eeeecccCCccchhhhhccchHHHHHHHHhcccchhhhhhhhhhhhhhHHHHHHHHHHHHHhhchhhhHHHHHHHhhhhH
Confidence 888755222111100 000000000 00000 00011111000 0 001
Q ss_pred HHHHHHHHHHHHhccCCcc--cCCCCCCCccccccccccccccCCchhhhhccCeEEEE---eCceeEEeCCcEEEcCCc
Q 010421 282 RRGVSKFIESYLLWKLPLL--KYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFK---RASKWWFWKGGLEFEDNT 356 (511)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~--~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~---~~~i~~~~~~~v~~~dG~ 356 (511)
+......+........... .....|++.. .+|++....+++.+.+.+.++..+ .+.|+++++++|+++||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~I~~~~~~gV~~~dg- 222 (235)
T d1w4xa2 148 NERVAEFIRNKIRNTVRDPEVAERLVPKGYP----FGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSER- 222 (235)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHSCCSSC----SSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEEEESSC-
T ss_pred HHHHHHHHHHHHHHhccchHhHHhccCCcCc----cccccccCCcchHHHhcCCCeeEEeecCCCCeEEeCCeEEECCC-
Confidence 1122222222222222111 1112222211 267777777888888877766554 46699999999999998
Q ss_pred eeeccEEEEecCC
Q 010421 357 KLEADVVILCTGY 369 (511)
Q Consensus 357 ~~~~D~VI~aTG~ 369 (511)
++++|+|||||||
T Consensus 223 ~~~~D~VV~ATGf 235 (235)
T d1w4xa2 223 EYELDSLVLATGF 235 (235)
T ss_dssp EEECSEEEECCCC
T ss_pred EEcCCEEEeCCCC
Confidence 5899999999998
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=9.5e-17 Score=139.27 Aligned_cols=121 Identities=26% Similarity=0.382 Sum_probs=93.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||||||||+||..| .|++|+|||+.+.+||.+....+ .+.+....++.
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~-----------------------~p~~~~~~~~~ 98 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ-----------------------IPGKEEFYETL 98 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT-----------------------STTCTTHHHHH
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEe-----------------------CcccchHHHHH
Confidence 468999999999999999999 99999999999999998764111 13344567888
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+|+...++++++ .+++|++|+. + . ...+|.||+|||. .|+
T Consensus 99 ~~~~~~~~~~gV--~i~l~~~Vt~-----~-------------------------~-----~~~~d~vilAtG~---~~~ 138 (179)
T d1ps9a3 99 RYYRRMIEVTGV--TLKLNHTVTA-----D-------------------------Q-----LQAFDETILASGI---PNR 138 (179)
T ss_dssp HHHHHHHHHHTC--EEEESCCCCS-----S-------------------------S-----SCCSSEEEECCCE---ECC
T ss_pred HHHHHhhhcCCe--EEEeCCEEcc-----c-------------------------c-----cccceeEEEeecC---CCc
Confidence 999999999998 8888876631 0 0 2458999999995 455
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHH
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLA 213 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a 213 (511)
.+.+| + ...+++|+|||+|.+++|+.
T Consensus 139 ~~~~p---g------------------------~~~g~~v~vigggd~a~~~~ 164 (179)
T d1ps9a3 139 ALAQP---L------------------------IDSGKTVHLIGGCDVAMELD 164 (179)
T ss_dssp TTHHH---H------------------------HTTTCCEEECGGGTCCSSCC
T ss_pred ccccc---h------------------------hccCCEEEEECCcHhhhhcc
Confidence 55444 2 13578999999999998863
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.59 E-value=8.1e-19 Score=161.49 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=99.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++|+||||||+||++|..| .|++|+|+|+++.+||.|..... ...+.......
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~-----------------------~~~~~~~~~~~ 104 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA-----------------------LPGLGEWSYHR 104 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT-----------------------STTCGGGGHHH
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccc-----------------------cceeecccccc
Confidence 458999999999999999999 99999999999999999876111 01111122333
Q ss_pred HHHHHHHHhcCCC-CceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCC
Q 010421 81 DYLESYAKHFDVF-KCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVP 159 (511)
Q Consensus 81 ~yl~~~~~~~~~~-~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p 159 (511)
++......+.... ..+.+ ... . ..++..+. .++.||+||+|||+. +
T Consensus 105 ~~~~~~~~~~~~~~~~~~~-------~~~----------------~--~~~~~~~~-----~~~~~d~vviAtG~~---~ 151 (233)
T d1djqa3 105 DYRETQITKLLKKNKESQL-------ALG----------------Q--KPMTADDV-----LQYGADKVIIATGAS---E 151 (233)
T ss_dssp HHHHHHHHHHHTTCTTCEE-------ECS----------------C--CCCCHHHH-----HTSCCSEEEECCCEE---C
T ss_pred hhHHHHHHHHhhcceeeee-------ecc----------------c--ccccchhh-----hhhccceeeeccCCC---c
Confidence 3333333332210 01111 110 0 00111111 146799999999965 3
Q ss_pred CCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 160 IIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 160 ~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
..|.++ +.+.......+...... .....+++|+|+|+|.+|+|+|.+|++.+.+ |+++.|++..
T Consensus 152 ~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~-----Vtli~r~~~~ 215 (233)
T d1djqa3 152 CTLWNE---LKARESEWAENDIKGIY------LIGDAEAPRLIADATFTGHRVAREIEEANPQ-----IAIPYKRETI 215 (233)
T ss_dssp CHHHHH---HHHTTHHHHHTTCCEEE------ECGGGTSCCCHHHHHHHHHHHHHTTTSSCTT-----SCCCCCCCCC
T ss_pred cccccc---ccccccccchhhhhhhh------hccccCCceeEecCchHHHHHHHHHHhcCCc-----eEEEEecccc
Confidence 444333 21111111112211111 1224678999999999999999999988765 9999998763
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.55 E-value=3.8e-15 Score=118.29 Aligned_cols=62 Identities=27% Similarity=0.315 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCcc----cceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 161 IPAFPNNKGPEVF----EGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 161 ~p~~~~~~g~~~~----~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|.+| |++.| .|.++||+.|++ +..++||+|+|||+|.||+|+|.+|++.+++ ++++.|++.
T Consensus 1 iP~ip---Gl~~f~~~~~G~i~Hs~~y~~------~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~-----v~~~~~r~~ 66 (107)
T d2gv8a2 1 IPNIK---GLDEYAKAVPGSVLHSSLFRE------PELFVGESVLVVGGASSANDLVRHLTPVAKH-----PIYQSLLGG 66 (107)
T ss_dssp BCCCB---THHHHHHHSTTSEEEGGGCCC------GGGGTTCCEEEECSSHHHHHHHHHHTTTSCS-----SEEEECTTC
T ss_pred CcCCC---ChHHHhccCCccEEECCcCcc------hhhcCCCeEEEECCCCCHHHHHHHHHHhcCE-----EEEEEecCc
Confidence 46677 76555 599999999997 5679999999999999999999999987654 777777654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.40 E-value=8.1e-14 Score=112.93 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=71.3
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHH
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTL 273 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~ 273 (511)
...+++|+|||+|.+|+|+|..|++.+.+ ||++.|++. ++|+.. + ..
T Consensus 27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~~-----Vtli~~~~~-~l~~~~------~----~~----------------- 73 (121)
T d1d7ya2 27 LRPQSRLLIVGGGVIGLELAATARTAGVH-----VSLVETQPR-LMSRAA------P----AT----------------- 73 (121)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSS-TTTTTS------C----HH-----------------
T ss_pred hhcCCeEEEECcchhHHHHHHHhhcccce-----EEEEeeccc-cccccC------C----HH-----------------
Confidence 45679999999999999999999998754 999999885 333221 0 00
Q ss_pred HHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEE
Q 010421 274 LCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEF 352 (511)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~ 352 (511)
+. +.+.+.+++.+|+++.+. +++++++.|++
T Consensus 74 -----------~~-------------------------------------~~~~~~l~~~GV~i~~~~~v~~~~~~~v~l 105 (121)
T d1d7ya2 74 -----------LA-------------------------------------DFVARYHAAQGVDLRFERSVTGSVDGVVLL 105 (121)
T ss_dssp -----------HH-------------------------------------HHHHHHHHTTTCEEEESCCEEEEETTEEEE
T ss_pred -----------HH-------------------------------------HHHHHHHHHCCcEEEeCCEEEEEeCCEEEE
Confidence 00 011134556678888775 88899999999
Q ss_pred cCCceeeccEEEEecC
Q 010421 353 EDNTKLEADVVILCTG 368 (511)
Q Consensus 353 ~dG~~~~~D~VI~aTG 368 (511)
+||+++++|.||+|||
T Consensus 106 ~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 106 DDGTRIAADMVVVGIG 121 (121)
T ss_dssp TTSCEEECSEEEECSC
T ss_pred CCCCEEECCEEEEeeC
Confidence 9999999999999998
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=9.6e-14 Score=125.51 Aligned_cols=181 Identities=16% Similarity=0.174 Sum_probs=96.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC-CCcCceeccCCCCccc-----cCCCCCCCCCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS-CSYNSTKLQSHRSDYE-----FTDFPWPNRDDPGFP 74 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 74 (511)
+.|||+||||||+|++||..+ .|.+|+|+|+ ..+||+|.. ..+|...+..+...+. ...+.+... ....
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~-~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~--~~~~ 77 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTT--INKF 77 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEE--EEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCC--cccc
Confidence 468999999999999999999 8999999999 579999854 1233322211111111 000001000 0111
Q ss_pred ChHHHHHHHHHH-----------HHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEE
Q 010421 75 SYTEILDYLESY-----------AKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY 143 (511)
Q Consensus 75 ~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 143 (511)
..+++..+.... .++.++ .+......... ...+. .++ ..+
T Consensus 78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV--~v~~~~~~~~~---------------------~~~~~-~~~-----~~~ 128 (217)
T d1gesa1 78 NWETLIASRTAYIDRIHTSYENVLGKNNV--DVIKGFARFVD---------------------AKTLE-VNG-----ETI 128 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESCCEEEE---------------------TTEEE-ETT-----EEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCeE--EEEeeecccce---------------------eeeec-CCC-----cee
Confidence 233444333322 223333 22222111100 00111 111 278
Q ss_pred EeCEEEEeecccCCCCCCCCCCCCCCCCcc-cceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcC
Q 010421 144 GFEFLVVCTGKYGDVPIIPAFPNNKGPEVF-EGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQ 221 (511)
Q Consensus 144 ~~d~vVlAtG~~~~~p~~p~~~~~~g~~~~-~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 221 (511)
.++.+|+|||. .|.+|.+|+.+++... .|-......+...+. ......++|.|||+|.+|+|+|..+++.+.
T Consensus 129 ~~~~~iiatG~---~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~---~~~t~~~~i~~iG~g~~g~ela~~~~~~G~ 201 (217)
T d1gesa1 129 TADHILIATGG---RPSHPREPANDNINLEAAGVKTNEKGYIVVDK---YQNTNIEGIYAVGDNTGAVELTPVAVAAGR 201 (217)
T ss_dssp EEEEEEECCCE---EECCCEEESCTTSCHHHHTCCBCTTSCBCCCT---TSBCSSTTEEECSGGGTSCCCHHHHHHHHH
T ss_pred eeeeeeeecCc---cccCCCCCCcCCcccccccEEEcCCccEeeCc---hhccCCCcEEEECCCccHHHHHHHHHHHHH
Confidence 99999999994 6788888743332211 111111121211110 112345789999999999999988887764
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.40 E-value=2.9e-13 Score=125.43 Aligned_cols=135 Identities=21% Similarity=0.279 Sum_probs=85.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc--------C-CCc--Cc-eeccCCCCccc----c--
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK--------S-CSY--NS-TKLQSHRSDYE----F-- 60 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~--------~-~~~--~~-~~~~~~~~~~~----~-- 60 (511)
|++.+||+|||||+|||.||..| .|++|+|+|+++.+|+... . +.. +. .....+..... +
T Consensus 1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (253)
T d2gqfa1 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN 80 (253)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence 88889999999999999999999 8999999999998874321 1 000 00 00111111000 0
Q ss_pred ---------CCCCCCCCC-CCCC--CChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce
Q 010421 61 ---------TDFPWPNRD-DPGF--PSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW 128 (511)
Q Consensus 61 ---------~~~~~~~~~-~~~~--~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (511)
...++.... ...| ....++.+.+...+++.++ .++++++|+++....+.. ...+
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV--~i~~~~~V~~i~~~~~~~------------~v~~ 146 (253)
T d2gqfa1 81 WDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQNDE------------KVRF 146 (253)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTC--EEECSCCEEEEEECCSCS------------SCCE
T ss_pred cchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCC--CeecCceEEEEEeecCCc------------eeEE
Confidence 001111000 0111 1357788999999999999 899999999999842110 1123
Q ss_pred EEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 129 EVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 129 ~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.+. .++. ++.||+||+|||..
T Consensus 147 ~~~-~~~~-----~~~a~~VIiAtGG~ 167 (253)
T d2gqfa1 147 VLQ-VNST-----QWQCKNLIVATGGL 167 (253)
T ss_dssp EEE-ETTE-----EEEESEEEECCCCS
T ss_pred EEe-cCCE-----EEEeCEEEEcCCcc
Confidence 222 2222 79999999999976
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.39 E-value=2.5e-13 Score=125.55 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=86.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--CcCc---------eeccCCC--------------
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--SYNS---------TKLQSHR-------------- 55 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--~~~~---------~~~~~~~-------------- 55 (511)
|.+||+|||||++|++||..| .|++|+|+|+++.+|+..... .... +....+.
T Consensus 1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T d2i0za1 1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN 80 (251)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence 359999999999999999999 999999999999888643210 0000 0000000
Q ss_pred -Ccc---ccCCCCCCCCC----CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc
Q 010421 56 -SDY---EFTDFPWPNRD----DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV 127 (511)
Q Consensus 56 -~~~---~~~~~~~~~~~----~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (511)
... .....++.... .+......++.+.|...+++.++ .++++++|+++... ++.
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv--~i~~~~~v~~i~~~----------------~~~ 142 (251)
T d2i0za1 81 EDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV--KIRTNTPVETIEYE----------------NGQ 142 (251)
T ss_dssp HHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEE----------------TTE
T ss_pred HHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCC--cccCCcEEEEEEEE----------------CCE
Confidence 000 00011110000 01123457788888888988998 89999999999973 333
Q ss_pred e-EEEEEeCCCCceeEEEeCEEEEeecccCCCCC
Q 010421 128 W-EVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPI 160 (511)
Q Consensus 128 ~-~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~ 160 (511)
+ .|.+++++ .+.+|+||+|||..| .|.
T Consensus 143 ~~~v~~~~g~-----~i~a~~vI~AtGg~S-~p~ 170 (251)
T d2i0za1 143 TKAVILQTGE-----VLETNHVVIAVGGKS-VPQ 170 (251)
T ss_dssp EEEEEETTCC-----EEECSCEEECCCCSS-SGG
T ss_pred EEEEEeCCCC-----eEecCeEEEccCCcc-ccc
Confidence 3 35555544 799999999999873 443
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1e-11 Score=99.68 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=78.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+|+|+.+.+. +.+ .+++.+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l--------------------------------~~~--d~~~~~ 66 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL--------------------------------PSF--DPMISE 66 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------------------------------TTS--CHHHHH
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhh--------------------------------hhc--chhhHH
Confidence 47899999999999999999 999999999987652 111 257889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++.+..++.++ +++++++|+.+... +++..++++++++ ++.+|.||+|||
T Consensus 67 ~~~~~l~~~GV--~~~~~~~v~~i~~~---------------~~~~~~v~~~~g~-----~~~~D~vi~a~G 116 (116)
T d1gesa2 67 TLVEVMNAEGP--QLHTNAIPKAVVKN---------------TDGSLTLELEDGR-----SETVDCLIWAIG 116 (116)
T ss_dssp HHHHHHHHHSC--EEECSCCEEEEEEC---------------TTSCEEEEETTSC-----EEEESEEEECSC
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEc---------------CCcEEEEEECCCC-----EEEcCEEEEecC
Confidence 99999999999 99999999999873 1455677776665 889999999998
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=9.3e-13 Score=105.91 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=67.5
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHH
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLL 274 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~ 274 (511)
..+|+|+|||+|.+|+|+|..+++.+.+ ||++.|+++ ++|..+ ..
T Consensus 19 ~~p~~vvIiGgG~ig~E~A~~l~~~G~~-----Vtlve~~~~-~l~~~d-----------~~------------------ 63 (116)
T d1gesa2 19 ALPERVAVVGAGYIGVELGGVINGLGAK-----THLFEMFDA-PLPSFD-----------PM------------------ 63 (116)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSS-SSTTSC-----------HH------------------
T ss_pred hCCCEEEEECCChhhHHHHHHhhccccE-----EEEEeecch-hhhhcc-----------hh------------------
Confidence 3568999999999999999999998765 999999875 445432 00
Q ss_pred HhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc----
Q 010421 275 CLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG---- 349 (511)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~---- 349 (511)
+. +.+.+.+++.+|+++.+. +.+++.++
T Consensus 64 ----------~~-------------------------------------~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~ 96 (116)
T d1gesa2 64 ----------IS-------------------------------------ETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL 96 (116)
T ss_dssp ----------HH-------------------------------------HHHHHHHHHHSCEEECSCCEEEEEECTTSCE
T ss_pred ----------hH-------------------------------------HHHHHHHHHCCCEEEeCCEEEEEEEcCCcEE
Confidence 00 111133455568888775 77775432
Q ss_pred -EEEcCCceeeccEEEEecC
Q 010421 350 -LEFEDNTKLEADVVILCTG 368 (511)
Q Consensus 350 -v~~~dG~~~~~D~VI~aTG 368 (511)
|.++||+++++|.||+|||
T Consensus 97 ~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 97 TLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp EEEETTSCEEEESEEEECSC
T ss_pred EEEECCCCEEEcCEEEEecC
Confidence 6788999999999999998
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.26 E-value=1.4e-11 Score=107.58 Aligned_cols=169 Identities=11% Similarity=-0.005 Sum_probs=98.6
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHH
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLC 275 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~ 275 (511)
.||||+|||||.+|+++|..|.+.+.. .+||++.+++....+... . ........
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~---~~Vtlie~~~~~~~~~~~-------~----~~~~~~~~------------ 54 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPS---IEVTLIEPNTDYYTCYLS-------N----EVIGGDRK------------ 54 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTT---SEEEEECSCSCEECSTTH-------H----HHHHTSSC------------
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCC---CcEEEEECCCcccccccc-------c----cccchhhh------------
Confidence 489999999999999999999998754 569999988754332211 0 00000000
Q ss_pred hhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCceeEEeCC--cEEEc
Q 010421 276 LLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRASKWWFWKG--GLEFE 353 (511)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~--~v~~~ 353 (511)
. ... ...........+.+..+.+..+... .+.+.
T Consensus 55 ---------------------------------~----------~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 90 (186)
T d1fcda1 55 ---------------------------------L----------ESI-KHGYDGLRAHGIQVVHDSATGIDPDKKLVKTA 90 (186)
T ss_dssp ---------------------------------G----------GGG-EECSHHHHTTTEEEECCCEEECCTTTTEEEET
T ss_pred ---------------------------------h----------hhh-hhhhhhccccceeEeeeeeEeeeeccceeecc
Confidence 0 000 0000122334566666655544433 37788
Q ss_pred CCceeeccEEEEecCCCCcccccccCCCcc---cccccCCCCcccceee-ecCCCCCceEEEeecccc----hhhhhHHH
Q 010421 354 DNTKLEADVVILCTGYDGKKKLKAFLPEPF---QSLLEHPSGLLPLYRG-TIHPLIPNMAFVGYIESV----SNLHTAEL 425 (511)
Q Consensus 354 dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~---~~~~~~~~~~~~ly~~-~~~~~~pnl~~iG~~~~~----~~~~~~e~ 425 (511)
+++++++|.+|+|||.+++........... .... .......+... ...++.||+|++|..... .....+..
T Consensus 91 ~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~~p~~~~~A~~ 169 (186)
T d1fcda1 91 GGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLT-NDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANS 169 (186)
T ss_dssp TSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCC-CTTSSEEBCSSSCBBSSSTTEEECTTSEECTTCCSSHHHHHH
T ss_pred cceeeccceEEEEeccccchhhhhhhhhhheeccCcc-cccccccceeeeeecccccCceEeccccccCCCCchHhHHHH
Confidence 999999999999999998865432111110 0111 11122222222 334678999999964432 22457888
Q ss_pred HHHHHHHHhc
Q 010421 426 RSIWLSRLID 435 (511)
Q Consensus 426 qa~~~a~~l~ 435 (511)
||+.+|+.|.
T Consensus 170 q~~~~A~ni~ 179 (186)
T d1fcda1 170 QGKVAAAAVV 179 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.25 E-value=8.8e-13 Score=107.12 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
|+.|++| |.+ .++.+.+..+.... ......+++|+|||||.+|+|+|..|++.+.+ ||++.|++..
T Consensus 2 ~r~p~ip---G~e----~~~t~~~~~d~~~l-~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~-----Vtlv~~~~~l- 67 (122)
T d1xhca2 2 AREPQIK---GKE----YLLTLRTIFDADRI-KESIENSGEAIIIGGGFIGLELAGNLAEAGYH-----VKLIHRGAMF- 67 (122)
T ss_dssp ECCCCSB---TGG----GEECCCSHHHHHHH-HHHHHHHSEEEEEECSHHHHHHHHHHHHTTCE-----EEEECSSSCC-
T ss_pred CCCcCCC---Ccc----ceEccCCHHHHHHH-HHHhhcCCcEEEECCcHHHHHHHHHhhcccce-----EEEEeccccc-
Confidence 5778888 754 24444443321110 11223568999999999999999999998765 9999998752
Q ss_pred ecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCcccccccccc
Q 010421 239 VPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLLCLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQ 318 (511)
Q Consensus 239 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 318 (511)
++ .+ . ... +
T Consensus 68 ~~-~d-------~----~~~----------------------------~------------------------------- 76 (122)
T d1xhca2 68 LG-LD-------E----ELS----------------------------N------------------------------- 76 (122)
T ss_dssp TT-CC-------H----HHH----------------------------H-------------------------------
T ss_pred cC-CC-------H----HHH----------------------------H-------------------------------
Confidence 22 11 0 000 0
Q ss_pred ccccCCchhhhhccCeEEEEeCc-eeEEeCCcEEEcCCceeeccEEEEecCC
Q 010421 319 MAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGGLEFEDNTKLEADVVILCTGY 369 (511)
Q Consensus 319 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~aTG~ 369 (511)
.+.+.+++.+|+++.+. +.+++++++ +.+++.+++|.||+|||-
T Consensus 77 ------~~~~~l~~~GV~~~~~~~v~~~~~~~v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 77 ------MIKDMLEETGVKFFLNSELLEANEEGV-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp ------HHHHHHHHTTEEEECSCCEEEECSSEE-EETTEEEECSCEEEECCE
T ss_pred ------HHHHHHHHCCcEEEeCCEEEEEeCCEE-EeCCCEEECCEEEEEEEe
Confidence 01123455578888875 888888876 567888999999999994
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.23 E-value=8.2e-12 Score=116.80 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 73 FPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 73 ~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
......+...+...+++.|. .++.+++|++++.. .+.|.|.+.++ ++.||+||+|+
T Consensus 147 ~i~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~----------------~~~~~V~t~~g------~i~a~~vV~Aa 202 (276)
T d1ryia1 147 HVEPYFVCKAYVKAAKMLGA--EIFEHTPVLHVERD----------------GEALFIKTPSG------DVWANHVVVAS 202 (276)
T ss_dssp BCCHHHHHHHHHHHHHHTTC--EEETTCCCCEEECS----------------SSSEEEEETTE------EEEEEEEEECC
T ss_pred eeecccchhHHHHHHHHcCC--EEecceEEEeEEee----------------cceEEEecCCe------EEEcCEEEECC
Confidence 34566777778888888998 89999999999872 45677776554 78999999999
Q ss_pred cccC
Q 010421 153 GKYG 156 (511)
Q Consensus 153 G~~~ 156 (511)
|.++
T Consensus 203 G~~s 206 (276)
T d1ryia1 203 GVWS 206 (276)
T ss_dssp GGGT
T ss_pred CccH
Confidence 9874
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.22 E-value=5.6e-11 Score=95.64 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=78.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..| .|.+|+++|+++.+. +. -.+++.+
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll--------------------------------~~--~d~ei~~ 67 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL--------------------------------PA--VDEQVAK 67 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC--------------------------------Cc--ccchhHH
Confidence 47899999999999999999 999999999987651 11 1467899
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+++++.++.++ .++++++|++++.. ++.-+|++.++++ ..++.||.|++|+|
T Consensus 68 ~l~~~l~~~Gv--~i~~~~~v~~i~~~----------------~~~v~v~~~~~~~--~~~~~~D~vlvAvG 119 (119)
T d3lada2 68 EAQKILTKQGL--KILLGARVTGTEVK----------------NKQVTVKFVDAEG--EKSQAFDKLIVAVG 119 (119)
T ss_dssp HHHHHHHHTTE--EEEETCEEEEEEEC----------------SSCEEEEEESSSE--EEEEEESEEEECSC
T ss_pred HHHHHHHhcCc--eeecCcEEEEEEEe----------------CCEEEEEEEECCC--CEEEECCEEEEeeC
Confidence 99999999999 89999999999983 3445677766542 33789999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.22 E-value=9.7e-12 Score=100.12 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=70.1
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHH
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLL 274 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~ 274 (511)
..+|+|+|||||.+|+|+|..+++.... +.+|+++.|.+. ++|..+ ..
T Consensus 16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~--g~~Vtli~~~~~-il~~~d-----------~~------------------ 63 (117)
T d1feca2 16 EAPKRALCVGGGYISIEFAGIFNAYKAR--GGQVDLAYRGDM-ILRGFD-----------SE------------------ 63 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHSCT--TCEEEEEESSSS-SSTTSC-----------HH------------------
T ss_pred ccCCeEEEECCChHHHHHHHHhHhhccc--ccccceeccccc-cccccc-----------ch------------------
Confidence 3568999999999999999888876432 346999999875 334432 00
Q ss_pred HhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC--c--
Q 010421 275 CLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG--G-- 349 (511)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--~-- 349 (511)
+.+.+.+.+++.+|+++.+. +.+++.+ +
T Consensus 64 -----------------------------------------------~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~ 96 (117)
T d1feca2 64 -----------------------------------------------LRKQLTEQLRANGINVRTHENPAKVTKNADGTR 96 (117)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTTEEEEETCCEEEEEECTTSCE
T ss_pred -----------------------------------------------hhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEE
Confidence 00111234666779999886 8888643 2
Q ss_pred -EEEcCCceeeccEEEEecCC
Q 010421 350 -LEFEDNTKLEADVVILCTGY 369 (511)
Q Consensus 350 -v~~~dG~~~~~D~VI~aTG~ 369 (511)
|+++||+++++|.||+|||.
T Consensus 97 ~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 97 HVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp EEEETTSCEEEESEEEECSCE
T ss_pred EEEECCCCEEEcCEEEEecCC
Confidence 78899999999999999993
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.21 E-value=1.9e-13 Score=125.36 Aligned_cols=155 Identities=16% Similarity=0.041 Sum_probs=89.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC-------CCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH-------HNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFP 74 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g-------~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (511)
.++|+|||||||||+||..| .| ++|+|||+.+.+||.|.+..+| .+.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p------------------------~~~ 57 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAP------------------------DHP 57 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCT------------------------TCT
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCc------------------------ccc
Confidence 46999999999999999999 44 5899999999999999773332 222
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
...++.++........++ .++++++|.. + +...+ ....||++++|||.
T Consensus 58 ~~~~~~~~~~~~~~~~g~--~~~~~~~v~~-----~-------------------~~~~~------~~~~~~~v~~atGa 105 (239)
T d1lqta2 58 KIKSISKQFEKTAEDPRF--RFFGNVVVGE-----H-------------------VQPGE------LSERYDAVIYAVGA 105 (239)
T ss_dssp GGGGGHHHHHHHHTSTTE--EEEESCCBTT-----T-------------------BCHHH------HHHHSSEEEECCCC
T ss_pred cchhhhhhhhhhhccCCc--eEEEEEEecc-----c-------------------cchhh------hhccccceeeecCC
Confidence 333445555555555555 5666654411 0 01111 12468999999996
Q ss_pred cCCCCCCCCCCCCCCCCcccc-eEEecc-ccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHH
Q 010421 155 YGDVPIIPAFPNNKGPEVFEG-QVLHSI-DYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAE 218 (511)
Q Consensus 155 ~~~~p~~p~~~~~~g~~~~~g-~~~hs~-~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~ 218 (511)
.+ ..+.+++......+.. ..++.. ...... ........+++++|+|+|.+++|++..+..
T Consensus 106 ~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~ 167 (239)
T d1lqta2 106 QS---RGVPTPGLPFDDQSGTIPNVGGRINGSPNE-YVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 167 (239)
T ss_dssp CE---ECCCCTTSCCBTTTTBCCEETTEETTCSSE-EECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred Cc---cccccccccccccccchhhhhhhhcccccc-ccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence 42 2222331112111110 011100 000000 000122357889999999999998876554
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.20 E-value=1.4e-10 Score=93.65 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=80.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..| .|.+|+|+|+++.+. +.+ .+++.+
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l--------------------------------~~~--d~ei~~ 68 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG--------------------------------ASM--DGEVAK 68 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------------------------------SSS--CHHHHH
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc--------------------------------hhh--hhhhHH
Confidence 47899999999999999999 999999999987652 222 368899
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEe
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVC 151 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlA 151 (511)
+++...++.|+ .++++++|++++..++ ....++++.++.+++.+++.+|.|++|
T Consensus 69 ~l~~~l~~~GV--~i~~~~~v~~v~~~~~--------------~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 69 ATQKFLKKQGL--DFKLSTKVISAKRNDD--------------KNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp HHHHHHHHTTC--EEECSEEEEEEEEETT--------------TTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred HHHHHHHhccc--eEEeCCEEEEEEEeCC--------------CcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 99999999999 9999999999998421 334556677776677778999999987
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.20 E-value=8.8e-12 Score=100.00 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=44.9
Q ss_pred CCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecC
Q 010421 162 PAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPH 241 (511)
Q Consensus 162 p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~ 241 (511)
|++| |.+ .++.+.++..+ ...++|+|||||.+|+|+|..|++.+.+ ||++.|++. ++|.
T Consensus 2 P~Ip---G~e----~~~ts~~~~~l--------~~p~~v~IiGgG~iG~E~A~~l~~~g~~-----Vtlv~~~~~-il~~ 60 (117)
T d1onfa2 2 PPVK---GIE----NTISSDEFFNI--------KESKKIGIVGSGYIAVELINVIKRLGID-----SYIFARGNR-ILRK 60 (117)
T ss_dssp CSCT---TGG----GCEEHHHHTTC--------CCCSEEEEECCSHHHHHHHHHHHTTTCE-----EEEECSSSS-SCTT
T ss_pred cccC---CHh----HcCchhHHhcc--------CCCCEEEEECCchHHHHHHHHHHhcccc-----ceeeehhcc-cccc
Confidence 6667 665 24566655442 2468999999999999999999988764 999999886 3454
Q ss_pred c
Q 010421 242 Y 242 (511)
Q Consensus 242 ~ 242 (511)
.
T Consensus 61 ~ 61 (117)
T d1onfa2 61 F 61 (117)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.19 E-value=3.7e-11 Score=104.99 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=66.3
Q ss_pred ccCeEEEEeCc-eeEEeCC--cEEEcCCceeeccEEEEecCCCCcccccccCCCccccc-ccCCCCcccceeeecCCCCC
Q 010421 331 EKGKIVFKRAS-KWWFWKG--GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSL-LEHPSGLLPLYRGTIHPLIP 406 (511)
Q Consensus 331 ~~g~v~v~~~~-i~~~~~~--~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~~~~~~~p 406 (511)
...+|+++.+. +.++..+ .+.++||+++++|.||+|||..|+..+.+ ..+... ....++.+.+..++ .++.|
T Consensus 66 ~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~~~~~gl~~~~~I~vd~~~-~ts~~ 141 (183)
T d1d7ya1 66 RAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLAN---DALARAAGLACDDGIFVDAYG-RTTCP 141 (183)
T ss_dssp GSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCEEEC---CHHHHHTTCCBSSSEECCTTC-BCSST
T ss_pred hcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEccccccc---ccccceeeEeeCCcEEeccce-ecccc
Confidence 34467777764 7777655 48889999999999999999998754322 111110 01122334444433 35689
Q ss_pred ceEEEeecccc-----------hhhhhHHHHHHHHHHHhc
Q 010421 407 NMAFVGYIESV-----------SNLHTAELRSIWLSRLID 435 (511)
Q Consensus 407 nl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~ 435 (511)
++|++|..... ..+..|..|++.+|+.|.
T Consensus 142 ~IyA~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil 181 (183)
T d1d7ya1 142 DVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV 181 (183)
T ss_dssp TEEECGGGEEEECTTTCSEEECCCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhccceeeCCceechhHHHHHHHHHHHHHHHHc
Confidence 99999965321 134579999999999874
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.18 E-value=1.5e-11 Score=99.80 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
|++|.+| +.+ +++.+.+.-.+. ..+++++|||+|.+|+|+|..+++.+.+ ||++.|++. +
T Consensus 2 ~~lP~ip---~~~----~i~ts~~~l~l~-------~~p~~vvIiGgG~IG~E~A~~~~~~G~~-----Vtive~~~~-i 61 (125)
T d1ojta2 2 TKLPFIP---EDP----RIIDSSGALALK-------EVPGKLLIIGGGIIGLEMGTVYSTLGSR-----LDVVEMMDG-L 61 (125)
T ss_dssp CCCSSCC---CCT----TEECHHHHTTCC-------CCCSEEEEESCSHHHHHHHHHHHHHTCE-----EEEECSSSS-S
T ss_pred CCCCCCC---CCC----cEEcHHHhhCcc-------ccCCeEEEECCCHHHHHHHHHhhcCCCE-----EEEEEeecc-c
Confidence 5667666 322 467776665532 4578999999999999999999999865 999999875 4
Q ss_pred ecCc
Q 010421 239 VPHY 242 (511)
Q Consensus 239 ~p~~ 242 (511)
+|..
T Consensus 62 l~~~ 65 (125)
T d1ojta2 62 MQGA 65 (125)
T ss_dssp STTS
T ss_pred cccc
Confidence 5544
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.18 E-value=3.1e-11 Score=113.17 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
....+...+.+.+++.+. .++++++|.+++.. +++|.|.+.++ ++.||+||+|+|.
T Consensus 148 ~p~~~~~~l~~~a~~~Gv--~i~~~~~V~~i~~~----------------~~~v~V~t~~g------~i~a~~VViAaG~ 203 (281)
T d2gf3a1 148 FSENCIRAYRELAEARGA--KVLTHTRVEDFDIS----------------PDSVKIETANG------SYTADKLIVSMGA 203 (281)
T ss_dssp EHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEC----------------SSCEEEEETTE------EEEEEEEEECCGG
T ss_pred cccccccccccccccccc--cccCCcEEEEEEEE----------------CCEEEEEECCc------EEEcCEEEECCCC
Confidence 346677888888888998 89999999999983 56688776554 7899999999998
Q ss_pred cC
Q 010421 155 YG 156 (511)
Q Consensus 155 ~~ 156 (511)
++
T Consensus 204 ~s 205 (281)
T d2gf3a1 204 WN 205 (281)
T ss_dssp GH
T ss_pred cc
Confidence 73
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.15 E-value=1.1e-10 Score=94.14 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=74.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++|+|||||+.|+.+|..| .|.+|+++|+++.+.. .. -.+++.
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~~--~~~~~~ 75 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS-------------------------------RA--APATLA 75 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------TT--SCHHHH
T ss_pred cCCeEEEECcchhHHHHHHHhhcccceEEEEeecccccc-------------------------------cc--CCHHHH
Confidence 457999999999999999999 9999999999865410 11 235788
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+++++..++.|+ .++++++|+++.. + .|++.++. ++.||.||+|+|
T Consensus 76 ~~~~~~l~~~GV--~i~~~~~v~~~~~------------------~--~v~l~dg~-----~i~~D~vi~a~G 121 (121)
T d1d7ya2 76 DFVARYHAAQGV--DLRFERSVTGSVD------------------G--VVLLDDGT-----RIAADMVVVGIG 121 (121)
T ss_dssp HHHHHHHHTTTC--EEEESCCEEEEET------------------T--EEEETTSC-----EEECSEEEECSC
T ss_pred HHHHHHHHHCCc--EEEeCCEEEEEeC------------------C--EEEECCCC-----EEECCEEEEeeC
Confidence 899999999999 8999999988763 1 46776665 899999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.15 E-value=1.5e-10 Score=94.94 Aligned_cols=97 Identities=12% Similarity=0.240 Sum_probs=76.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++|+|||||+.|+.+|..| .|.+|+++|+++.+.. . ...+++.
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~-------------------------------~--~~~~~~~ 80 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-------------------------------R--VTAPPVS 80 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------T--TSCHHHH
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc-------------------------------c--ccchhhh
Confidence 457999999999999999999 9999999999876411 1 1235778
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeec
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+++++..++.|+ .++++++|+.++...+ ++.- .+.+.++. ++.+|.||+|+|
T Consensus 81 ~~~~~~~~~~GV--~i~~~~~v~~i~~~~~--------------~~~v~~v~~~~G~-----~i~~D~vi~a~G 133 (133)
T d1q1ra2 81 AFYEHLHREAGV--DIRTGTQVCGFEMSTD--------------QQKVTAVLCEDGT-----RLPADLVIAGIG 133 (133)
T ss_dssp HHHHHHHHHHTC--EEECSCCEEEEEECTT--------------TCCEEEEEETTSC-----EEECSEEEECCC
T ss_pred hhhhhccccccc--EEEeCCeEEEEEEeCC--------------CceEEEEECCCCC-----EEECCEEEEeeC
Confidence 889899999999 8999999999988421 2222 24455554 799999999998
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.15 E-value=7.3e-11 Score=101.37 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=65.9
Q ss_pred hhccCeEEEEeCc-eeEEeCC-cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCC
Q 010421 329 EAEKGKIVFKRAS-KWWFWKG-GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIP 406 (511)
Q Consensus 329 ~l~~g~v~v~~~~-i~~~~~~-~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~p 406 (511)
.+.+.+++++.+. +.+++.+ .+++.++.++++|.+|+|||..++. +....+. ..+..+.+..++ .++.|
T Consensus 61 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~i~~D~li~a~G~~~~~-~~~~~gl-------~~~~~i~v~~~~-~t~~~ 131 (167)
T d1xhca1 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVD-LARRSGI-------HTGRGILIDDNF-RTSAK 131 (167)
T ss_dssp HHHHHTEEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEECCH-HHHHTTC-------CBSSSEECCTTS-BCSST
T ss_pred HHHhccceeeeeccccccccccccccccccccccceeEEEEEecCCc-hhhhcCc-------eeCCceeecccc-EecCC
Confidence 4455567888765 7777654 4788899999999999999987653 2111111 111122222222 35679
Q ss_pred ceEEEeecccc-----hhhhhHHHHHHHHHHHhcCC
Q 010421 407 NMAFVGYIESV-----SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 407 nl~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~ 437 (511)
++|++|..... .....+..||+.+|+.|.|+
T Consensus 132 ~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 132 DVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 167 (167)
T ss_dssp TEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred CeEEeeecccCCCeEEChHHHHHHHHHHHHHHcCCC
Confidence 99999975432 23467889999999999874
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=2.3e-10 Score=92.29 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=81.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..| .|.+|+|++++ .+ .+.+ .+++.+
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~--------------------------------l~~~--D~~~~~ 64 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL--------------------------------LRGF--DQDMAN 64 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SS--------------------------------STTS--CHHHHH
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hh--------------------------------hccC--CHHHHH
Confidence 46899999999999999999 99999999974 32 0122 467889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++.+..++.|+ .++++++|++++...+. .++...+++....+++.....||.|++|+|
T Consensus 65 ~l~~~l~~~Gv--~i~~~~~v~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 65 KIGEHMEEHGI--KFIRQFVPTKIEQIEAG------------TPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp HHHHHHHHTTE--EEEESCEEEEEEEEECS------------TTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred HHHHHHHHCCC--EEEECCEEEEEEEecCC------------CccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 99999999999 99999999999874221 155667777777666666788999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.13 E-value=2e-10 Score=92.16 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=76.6
Q ss_pred CCeEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
.++++|||||+.|+.+|..+ .|.+|+++|+.+.+. +.+ .++
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il--------------------------------~~~--d~~ 63 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--------------------------------RGF--DSE 63 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--------------------------------TTS--CHH
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc--------------------------------ccc--cch
Confidence 47899999999999999765 478999999976651 222 357
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+.+++++..++.++ .++++++|++++... ++...+.++++. ++.||.||+|+|
T Consensus 64 ~~~~~~~~l~~~GI--~v~~~~~v~~i~~~~---------------~g~~~v~~~~g~-----~i~~D~Vi~a~G 116 (117)
T d1feca2 64 LRKQLTEQLRANGI--NVRTHENPAKVTKNA---------------DGTRHVVFESGA-----EADYDVVMLAIG 116 (117)
T ss_dssp HHHHHHHHHHHTTE--EEEETCCEEEEEECT---------------TSCEEEEETTSC-----EEEESEEEECSC
T ss_pred hhHHHHHHHhhCcE--EEEcCCEEEEEEECC---------------CCEEEEEECCCC-----EEEcCEEEEecC
Confidence 88999999999999 899999999998731 445567777665 789999999999
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.12 E-value=4.2e-11 Score=96.14 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=68.5
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHH
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLL 274 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~ 274 (511)
..+++|+|||||.+|+|+|..+...+.. ..+||++.|.+. ++|..+ ...
T Consensus 18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~--~~~Vtli~~~~~-iL~~~d-----------~~~----------------- 66 (117)
T d1aoga2 18 EPPRRVLTVGGGFISVEFAGIFNAYKPK--DGQVTLCYRGEM-ILRGFD-----------HTL----------------- 66 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHCCT--TCEEEEEESSSS-SSTTSC-----------HHH-----------------
T ss_pred hcCCeEEEECCcHHHHHHHHHhhhcccC--CcEEEEEeccch-hhcccc-----------hHH-----------------
Confidence 4578999999999999999998887653 356999999875 445443 000
Q ss_pred HhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeC--Cc--
Q 010421 275 CLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWK--GG-- 349 (511)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~~-- 349 (511)
++.+.+.+++.+|+++.+. +.+++. ++
T Consensus 67 ------------------------------------------------~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~ 98 (117)
T d1aoga2 67 ------------------------------------------------REELTKQLTANGIQILTKENPAKVELNADGSK 98 (117)
T ss_dssp ------------------------------------------------HHHHHHHHHHTTCEEEESCCEEEEEECTTSCE
T ss_pred ------------------------------------------------HHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeE
Confidence 0111234666788888886 788853 33
Q ss_pred -EEEcCCceeeccEEEEe
Q 010421 350 -LEFEDNTKLEADVVILC 366 (511)
Q Consensus 350 -v~~~dG~~~~~D~VI~a 366 (511)
|.++||+++++|.||+|
T Consensus 99 ~v~~~~G~~i~~D~Vi~A 116 (117)
T d1aoga2 99 SVTFESGKKMDFDLVMMA 116 (117)
T ss_dssp EEEETTSCEEEESEEEEC
T ss_pred EEEECCCcEEEeCEEEEe
Confidence 78999999999999998
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.12 E-value=1.8e-10 Score=100.58 Aligned_cols=100 Identities=12% Similarity=0.033 Sum_probs=62.5
Q ss_pred CeEEEEeCc-eeEEeCC--cEEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceE
Q 010421 333 GKIVFKRAS-KWWFWKG--GLEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMA 409 (511)
Q Consensus 333 g~v~v~~~~-i~~~~~~--~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~ 409 (511)
..+.+..+. +..++.+ .+.+.++.++++|.+|+++|.++..+-..++ .......++.+.+..++ .++.|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~----~~~~~~~~~~i~Vd~~~-~ts~~~vy 146 (185)
T d1q1ra1 72 QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELA----SAAGLQVDNGIVINEHM-QTSDPLIM 146 (185)
T ss_dssp TTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHH----HHTTCCBSSSEECCTTS-BCSSTTEE
T ss_pred cceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhH----HhCCccccCccccCCcc-ccchhhhh
Confidence 334444443 4444443 3778899999999999999988754322111 11111223334444333 36789999
Q ss_pred EEeecccc-----------hhhhhHHHHHHHHHHHhcCC
Q 010421 410 FVGYIESV-----------SNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 410 ~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 437 (511)
++|..... ..+..|..|++.+|..|.|+
T Consensus 147 a~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 147 AVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp ECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred cchhhhccccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence 99964321 23568999999999999985
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.11 E-value=5.2e-10 Score=89.67 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=76.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+|+|+.+.+. +.+ ..++.+
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il--------------------------------~~~--d~~~~~ 67 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL--------------------------------SGF--EKQMAA 67 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS--------------------------------TTS--CHHHHH
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecceec--------------------------------ccc--cchhHH
Confidence 47899999999999999999 999999999987762 111 357889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEe
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVC 151 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlA 151 (511)
++.+..++.|+ .++++++|++++.. ++...+++..+ ++.+++.||.||+.
T Consensus 68 ~l~~~l~~~GI--~i~~~~~v~~i~~~----------------~~~~~v~~~~~--g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 68 IIKKRLKKKGV--EVVTNALAKGAEER----------------EDGVTVTYEAN--GETKTIDADYVLVT 117 (117)
T ss_dssp HHHHHHHHTTC--EEEESEEEEEEEEE----------------TTEEEEEEEET--TEEEEEEESEEEEC
T ss_pred HHHHHHHhcCC--EEEcCCEEEEEEEc----------------CCEEEEEEEeC--CCEEEEEeEEEEEC
Confidence 99999999999 99999999999974 33456666554 34457999999973
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.11 E-value=3.9e-10 Score=90.18 Aligned_cols=94 Identities=18% Similarity=0.346 Sum_probs=76.6
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++|+|||||+.|+.+|..| .|.+|+|+|+.+.+. +.+ .+++.
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il--------------------------------~~~--d~~~~ 66 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL--------------------------------RKF--DESVI 66 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC--------------------------------TTS--CHHHH
T ss_pred CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccc--------------------------------ccc--cHHHH
Confidence 457899999999999999999 899999999987651 222 36888
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEE-EeCEEEEee
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRY-GFEFLVVCT 152 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~d~vVlAt 152 (511)
+++++..++.++ .++++++|++++... ++..++++.+++ .+ .||.||+|.
T Consensus 67 ~~~~~~l~~~gV--~i~~~~~v~~i~~~~---------------~~~~~v~~~~G~-----~~~~~D~Vi~AI 117 (117)
T d1onfa2 67 NVLENDMKKNNI--NIVTFADVVEIKKVS---------------DKNLSIHLSDGR-----IYEHFDHVIYCV 117 (117)
T ss_dssp HHHHHHHHHTTC--EEECSCCEEEEEESS---------------TTCEEEEETTSC-----EEEEESEEEECC
T ss_pred HHHHHHHHhCCC--EEEECCEEEEEEEcC---------------CCeEEEEECCCC-----EEEeCCEEEEeC
Confidence 999999999999 999999999998731 556677777764 44 589999984
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.10 E-value=2.8e-11 Score=96.95 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=42.7
Q ss_pred cceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 174 EGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 174 ~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
.++++.+.+.-.+ ...+++++|||||.+|+|+|..+++.+.+ ||++.|.+. ++|..
T Consensus 5 g~~~~~s~~~l~~-------~~~p~~vvIiGgG~~G~E~A~~l~~~g~~-----Vtlve~~~~-il~~~ 60 (115)
T d1lvla2 5 GGPVISSTEALAP-------KALPQHLVVVGGGYIGLELGIAYRKLGAQ-----VSVVEARER-ILPTY 60 (115)
T ss_dssp BTTEECHHHHTCC-------SSCCSEEEEECCSHHHHHHHHHHHHHTCE-----EEEECSSSS-SSTTS
T ss_pred CCcEECChHHhCc-------ccCCCeEEEECCCHHHHHHHHHHhhcccc-----eEEEeeecc-ccccc
Confidence 3456766655442 23568999999999999999999999865 999999886 44543
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.08 E-value=3.1e-10 Score=90.66 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=72.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..| .|.+|+|+|+.+.+. +.+ .+++.+
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il--------------------------------~~~--d~~~~~ 66 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL--------------------------------PTY--DSELTA 66 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS--------------------------------TTS--CHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc--------------------------------ccc--cchhHH
Confidence 47899999999999999999 899999999987652 122 357889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++++..++.++ +++++++|++++. + .+.+.... +...++.||.||+|+|
T Consensus 67 ~l~~~l~~~gV--~i~~~~~V~~i~~------------------~--~~~~~~~~-~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 67 PVAESLKKLGI--ALHLGHSVEGYEN------------------G--CLLANDGK-GGQLRLEADRVLVAVG 115 (115)
T ss_dssp HHHHHHHHHTC--EEETTCEEEEEET------------------T--EEEEECSS-SCCCEECCSCEEECCC
T ss_pred HHHHHHHhhcc--eEEcCcEEEEEcC------------------C--eEEEEEcC-CCeEEEEcCEEEEecC
Confidence 99999999999 8999999999863 1 12222222 2233789999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.07 E-value=1.1e-10 Score=93.78 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=43.1
Q ss_pred eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 176 QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 176 ~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
.+++|.+...+. ..+++++|||+|.+|+|+|..+++.+.+ ||++.|+++ ++|..
T Consensus 8 ~v~~s~~~l~l~-------~~p~~i~IiG~G~ig~E~A~~l~~~G~~-----Vtiv~~~~~-ll~~~ 61 (119)
T d3lada2 8 VIVDSTGALDFQ-------NVPGKLGVIGAGVIGLELGSVWARLGAE-----VTVLEAMDK-FLPAV 61 (119)
T ss_dssp SEEEHHHHTSCS-------SCCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSS-SSTTS
T ss_pred EEEchhHhhCcc-------cCCCeEEEECCChHHHHHHHHHHHcCCc-----eEEEEeecc-cCCcc
Confidence 477777665533 4679999999999999999999999865 999999886 34543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=9.7e-10 Score=89.06 Aligned_cols=98 Identities=20% Similarity=0.124 Sum_probs=77.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..| .|.+|+|+|+++.+- +.+ .+++.+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~~~--d~~~~~ 67 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL--------------------------------RSF--DSMIST 67 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--------------------------------TTS--CHHHHH
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc--------------------------------cch--hhHHHH
Confidence 47899999999999999999 999999999987651 222 357889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCc----eeEEEeCEEEEeec
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNS----IQRYGFEFLVVCTG 153 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~d~vVlAtG 153 (511)
++.+..++.++ .++++++|++++.. .+.+.++......++ .....+|.||+|+|
T Consensus 68 ~~~~~l~~~Gv--~i~~~~~v~~i~~~----------------~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 68 NCTEELENAGV--EVLKFSQVKEVKKT----------------LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp HHHHHHHHTTC--EEETTEEEEEEEEE----------------TTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEEc----------------CCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 99999999999 99999999999874 334556555443221 23568999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.07 E-value=4.5e-11 Score=98.23 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=33.4
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+++|+|||||.+|+|+|..|++.+.+ ||++.|.+.
T Consensus 33 ~~~k~v~VIGgG~iG~E~A~~l~~~g~~-----Vtvie~~~~ 69 (133)
T d1q1ra2 33 IADNRLVVIGGGYIGLEVAATAIKANMH-----VTLLDTAAR 69 (133)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSS
T ss_pred ccCCEEEEECCchHHHHHHHHHHhhCcc-----eeeeeeccc
Confidence 4679999999999999999999998764 999999886
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.06 E-value=3.9e-10 Score=91.20 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=78.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..+ .|.+|+|+|+.+.+. +.+ ..++.+
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il--------------------------------~~~--d~~~~~ 71 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM--------------------------------QGA--DRDLVK 71 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS--------------------------------TTS--CHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc--------------------------------ccc--hhhHHH
Confidence 47899999999999999999 999999999987662 211 468899
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++.+..++.++ .++++++|++++.. ++.-.|++++.+ +..+++.||.|++|+|
T Consensus 72 ~l~~~l~~~gv--~~~~~~~v~~v~~~----------------~~g~~v~~~~~~-g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 72 VWQKQNEYRFD--NIMVNTKTVAVEPK----------------EDGVYVTFEGAN-APKEPQRYDAVLVAAG 124 (125)
T ss_dssp HHHHHHGGGEE--EEECSCEEEEEEEE----------------TTEEEEEEESSS-CCSSCEEESCEEECCC
T ss_pred HHHHHHHHcCc--ccccCcEEEEEEEc----------------CCcEEEEEEeCC-CCeEEEEcCEEEEecC
Confidence 99999999888 89999999999974 233456666543 3334799999999999
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.06 E-value=3.4e-10 Score=104.62 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=76.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--CcC---------ceec---cCCCCccccCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--SYN---------STKL---QSHRSDYEFTDFPWP 66 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--~~~---------~~~~---~~~~~~~~~~~~~~~ 66 (511)
...+|+|||||++||++|..| .|++|+||||++.++..+... .++ ++.. ..+...+.+.+++..
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 82 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence 467999999999999999999 999999999987654332210 000 1100 111122222221111
Q ss_pred CCC-----CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCcee
Q 010421 67 NRD-----DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQ 141 (511)
Q Consensus 67 ~~~-----~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (511)
... .........+ +.......... .++++++|+++... .+.|+|++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~v~~~~~~----------------~~~v~v~~~dG~----- 137 (265)
T d2voua1 83 ERVGSVPADWRFTSYDSI--YGGLYELFGPE--RYHTSKCLVGLSQD----------------SETVQMRFSDGT----- 137 (265)
T ss_dssp CEEEEEECCCCEEEHHHH--HHHHHHHHCST--TEETTCCEEEEEEC----------------SSCEEEEETTSC-----
T ss_pred ceecccccccccchhHHH--HHHHHHhcccc--eeecCcEEEEEEee----------------CCceEEEECCCC-----
Confidence 100 0111112222 11222222333 68999999999873 456888887775
Q ss_pred EEEeCEEEEeecccC
Q 010421 142 RYGFEFLVVCTGKYG 156 (511)
Q Consensus 142 ~~~~d~vVlAtG~~~ 156 (511)
++.+|.+|.|.|..+
T Consensus 138 ~~~~d~~v~adG~~s 152 (265)
T d2voua1 138 KAEANWVIGADGGAS 152 (265)
T ss_dssp EEEESEEEECCCTTC
T ss_pred EEEEEEEeccccccc
Confidence 789999999999774
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.05 E-value=9.5e-10 Score=88.02 Aligned_cols=93 Identities=10% Similarity=0.180 Sum_probs=75.5
Q ss_pred CCeEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTE 78 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (511)
.++++|||||+.|+.+|..+ .+.+|+++|+.+.+- +.+ .++
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL--------------------------------~~~--d~~ 65 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL--------------------------------RGF--DHT 65 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS--------------------------------TTS--CHH
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh--------------------------------ccc--chH
Confidence 47899999999999999765 467899999976551 222 367
Q ss_pred HHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 79 ILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 79 ~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
+.+++++..++.|+ +++++++|++++.. .++...|++++++ ++.||.||+|.
T Consensus 66 ~~~~l~~~l~~~GV--~v~~~~~v~~ie~~---------------~~~~~~v~~~~G~-----~i~~D~Vi~AI 117 (117)
T d1aoga2 66 LREELTKQLTANGI--QILTKENPAKVELN---------------ADGSKSVTFESGK-----KMDFDLVMMAI 117 (117)
T ss_dssp HHHHHHHHHHHTTC--EEEESCCEEEEEEC---------------TTSCEEEEETTSC-----EEEESEEEECS
T ss_pred HHHHHHHHHHhcCc--EEEcCCEEEEEEEc---------------CCCeEEEEECCCc-----EEEeCEEEEeC
Confidence 88999999999999 99999999999873 1556678877765 79999999984
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.05 E-value=6.8e-10 Score=89.68 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=79.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..+ .|.+|+|+|+++.+. +. -..++.+
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l--------------------------------~~--~d~~~~~ 70 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV--------------------------------PT--MDAEIRK 70 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS--------------------------------TT--SCHHHHH
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC--------------------------------ch--hhhcchh
Confidence 47899999999999999999 999999999987651 11 1357889
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
++.+..++.++ +++++++|.+++.. ++..+|++...++++.+.+.+|.|++|.
T Consensus 71 ~l~~~l~~~GI--~i~~~~~v~~i~~~----------------~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 71 QFQRSLEKQGM--KFKLKTKVVGVDTS----------------GDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp HHHHHHHHSSC--CEECSEEEEEEECS----------------SSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred hhhhhhhcccc--eEEcCCceEEEEEc----------------cCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 99999999999 99999999999973 3455677776655565679999999883
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=5.5e-10 Score=92.19 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=76.3
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYT 77 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (511)
.++++|||||+.|+.+|..| .|.+|+++|+++.+. ...+ .+
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l-------------------------------~~~~--~~ 83 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM-------------------------------GKIL--PE 83 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT-------------------------------TTTS--CH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC-------------------------------cccC--CH
Confidence 46899999999999999888 478999999986541 1122 25
Q ss_pred HHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 78 EILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 78 ~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++.+++.+..++.|+ .++++++|.+++.. ++...|++.+++ ++.||.||+|+|
T Consensus 84 ~~~~~~~~~l~~~GV--~~~~~~~V~~i~~~----------------~~~~~v~l~~G~-----~i~aD~Vi~A~G 136 (137)
T d1m6ia2 84 YLSNWTMEKVRREGV--KVMPNAIVQSVGVS----------------SGKLLIKLKDGR-----KVETDHIVAAVG 136 (137)
T ss_dssp HHHHHHHHHHHTTTC--EEECSCCEEEEEEE----------------TTEEEEEETTSC-----EEEESEEEECCC
T ss_pred HHHHHHHHHHHhCCc--EEEeCCEEEEEEec----------------CCEEEEEECCCC-----EEECCEEEEeec
Confidence 678889999999999 99999999999873 445567777765 899999999999
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.04 E-value=1.1e-10 Score=110.40 Aligned_cols=36 Identities=39% Similarity=0.761 Sum_probs=34.1
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIW 41 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w 41 (511)
||+|||||++||+||..| .|++|+|+|+++.+||..
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 39 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV 39 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceE
Confidence 799999999999999999 899999999999999853
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.02 E-value=4.2e-12 Score=112.36 Aligned_cols=41 Identities=29% Similarity=0.493 Sum_probs=37.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~ 43 (511)
..++|+|||||++||+||.+| .|+ +|+|||+++.+||.|..
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~ 46 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS 46 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence 357999999999999999999 888 59999999999998876
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=9.3e-10 Score=98.29 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=70.7
Q ss_pred hhhccCeEEEEeCc-eeEEeC--CcEEEcCCceeeccEEEEecCCCCcc-cccccCCCccccccc-CCCCcccceeeecC
Q 010421 328 SEAEKGKIVFKRAS-KWWFWK--GGLEFEDNTKLEADVVILCTGYDGKK-KLKAFLPEPFQSLLE-HPSGLLPLYRGTIH 402 (511)
Q Consensus 328 ~~l~~g~v~v~~~~-i~~~~~--~~v~~~dG~~~~~D~VI~aTG~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ly~~~~~ 402 (511)
..+++.+|+++.+. |++++. +.|.++||+++++|.||+|||-.+.. .+.. ..++.. ...+.+.+..++.
T Consensus 91 ~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~-----~~gl~~~~~~~~i~vd~~l~- 164 (213)
T d1m6ia1 91 PHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAK-----TGGLEIDSDFGGFRVNAELQ- 164 (213)
T ss_dssp TTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHH-----HHTCCBCTTTCSEECCTTCE-
T ss_pred HHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhh-----ccchhhhhhhhhhhhhHhcC-
Confidence 45677889999986 888864 45999999999999999999977553 2211 111111 2223444444433
Q ss_pred CCCCceEEEeeccc----------chhhhhHHHHHHHHHHHhcCCC
Q 010421 403 PLIPNMAFVGYIES----------VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 403 ~~~pnl~~iG~~~~----------~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
+. ||+|++|.... ...+..+..|++.+|+.+.|..
T Consensus 165 ~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~ 209 (213)
T d1m6ia1 165 AR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 209 (213)
T ss_dssp EE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred cC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCC
Confidence 23 89999996432 1234679999999999999864
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.99 E-value=1.4e-09 Score=87.70 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+.+|..| .|.+|+++|+.+.+- +.. -.+++.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l--------------------------------~~~-~d~~~~~ 76 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL--------------------------------GVY-LDKEFTD 76 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT--------------------------------TTT-CCHHHHH
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccc--------------------------------ccc-cchhhHH
Confidence 46899999999999999999 999999999976541 111 1357888
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
+++++.+..++ .++++++|++++. ++.-...+.++. ++.||.||+|.
T Consensus 77 ~~~~~l~~~gv--~~~~~~~v~~i~~-----------------~~~~~~v~~dg~-----~i~~D~vi~aI 123 (123)
T d1nhpa2 77 VLTEEMEANNI--TIATGETVERYEG-----------------DGRVQKVVTDKN-----AYDADLVVVAV 123 (123)
T ss_dssp HHHHHHHTTTE--EEEESCCEEEEEC-----------------SSBCCEEEESSC-----EEECSEEEECS
T ss_pred HHHHHhhcCCe--EEEeCceEEEEEc-----------------CCCEEEEEeCCC-----EEECCEEEEEC
Confidence 99999988898 8999999999986 222223355554 89999999983
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.98 E-value=2.3e-11 Score=110.49 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=52.2
Q ss_pred CeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
.+|+|||||||||+||.+| .+++|+|||+.+.+||.+.+ .. ...+.....+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~-~~-----------------------~~~~~~~~~~~ 57 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF-GV-----------------------APDHPEVKNVI 57 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH-TS-----------------------CTTCGGGGGHH
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh-hc-----------------------cccccccccch
Confidence 5899999999999999998 47899999999999998765 11 12333445566
Q ss_pred HHHHHHHHhcCCCCceEeeeEE
Q 010421 81 DYLESYAKHFDVFKCVRFNSKV 102 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V 102 (511)
.+.....+..++ .++++++|
T Consensus 58 ~~~~~~~~~~~~--~~~~~~~v 77 (230)
T d1cjca2 58 NTFTQTARSDRC--AFYGNVEV 77 (230)
T ss_dssp HHHHHHHTSTTE--EEEBSCCB
T ss_pred hhhhhhhhcCCe--eEEeeEEe
Confidence 666666666665 55555544
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.98 E-value=4.4e-09 Score=84.69 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=75.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||||+.|+..|..| .+.+|+++++.+.+. +. -.+++.+
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l--------------------------------~~--~d~~~~~ 67 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK--------------------------------LI--KDNETRA 67 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--------------------------------TC--CSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh--------------------------------cc--cccchhh
Confidence 47899999999999999999 899999999986541 11 2357788
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
++++..++.++ .++++++|++++..+ ++.+........ +...++.||.||+|+|
T Consensus 68 ~~~~~l~~~gI--~v~~~~~v~~i~~~~---------------~~~~~~~~~~~~-~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 68 YVLDRMKEQGM--EIISGSNVTRIEEDA---------------NGRVQAVVAMTP-NGEMRIETDFVFLGLG 121 (121)
T ss_dssp HHHHHHHHTTC--EEESSCEEEEEEECT---------------TSBEEEEEEEET-TEEEEEECSCEEECCC
T ss_pred hhhhhhhcccc--EEEcCCEEEEEEecC---------------CceEEEEEEEeC-CCCEEEEcCEEEEEEC
Confidence 99999999999 899999999999832 344333322221 2233799999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.98 E-value=4e-10 Score=91.07 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=67.3
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHH
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLL 274 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~ 274 (511)
..+|+|+|||+|.+|+|+|..+++.+.+ ||++.|.++ ++|+.. + ...
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~-----Vtlie~~~~-~l~~~~------d----~~~----------------- 74 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKK-----VTVIDILDR-PLGVYL------D----KEF----------------- 74 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSS-TTTTTC------C----HHH-----------------
T ss_pred cCCCEEEEECChHHHHHHHHHhhccceE-----EEEEEecCc-cccccc------c----hhh-----------------
Confidence 4678999999999999999999998765 999999875 333221 0 000
Q ss_pred HhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCCc---E
Q 010421 275 CLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKGG---L 350 (511)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~~---v 350 (511)
. ..+.+.+++.+|+++.+. +.++++++ +
T Consensus 75 -----------~-------------------------------------~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~ 106 (123)
T d1nhpa2 75 -----------T-------------------------------------DVLTEEMEANNITIATGETVERYEGDGRVQK 106 (123)
T ss_dssp -----------H-------------------------------------HHHHHHHHTTTEEEEESCCEEEEECSSBCCE
T ss_pred -----------H-------------------------------------HHHHHHhhcCCeEEEeCceEEEEEcCCCEEE
Confidence 0 111234566678998886 88888764 5
Q ss_pred EEcCCceeeccEEEEe
Q 010421 351 EFEDNTKLEADVVILC 366 (511)
Q Consensus 351 ~~~dG~~~~~D~VI~a 366 (511)
++.||+++++|.||+|
T Consensus 107 v~~dg~~i~~D~vi~a 122 (123)
T d1nhpa2 107 VVTDKNAYDADLVVVA 122 (123)
T ss_dssp EEESSCEEECSEEEEC
T ss_pred EEeCCCEEECCEEEEE
Confidence 6889999999999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.4e-10 Score=94.41 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=66.9
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCcccCCccchhhhhhhhhhhhcCCCchhHHHHHH
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHYRIWGLPFFMFYSTRFSQFLHGSPNQSLLRTLL 274 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~ 274 (511)
..+++++|||||.+|+|+|.+|++.... .+.+|+++.+.+..+ ++.. | ...
T Consensus 35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~-~g~~Vt~i~~~~~~l-~~~~----~------~~~----------------- 85 (137)
T d1m6ia2 35 REVKSITIIGGGFLGSELACALGRKARA-LGTEVIQLFPEKGNM-GKIL----P------EYL----------------- 85 (137)
T ss_dssp HHCSEEEEECCSHHHHHHHHHHHHHHHH-HTCEEEEECSSSSTT-TTTS----C------HHH-----------------
T ss_pred hcCCEEEEECCCHHHHHHHHHHHHHHHh-cCCEEEEecccccCC-cccC----C------HHH-----------------
Confidence 3578999999999999999999753110 013599999977532 2211 0 000
Q ss_pred HhhhhhhHHHHHHHHHHHHhccCCcccCCCCCCCccccccccccccccCCchhhhhccCeEEEEeCc-eeEEeCC----c
Q 010421 275 CLLLSPLRRGVSKFIESYLLWKLPLLKYGLKPDHPFEEDYASCQMAIMPEGFFSEAEKGKIVFKRAS-KWWFWKG----G 349 (511)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----~ 349 (511)
. +.+.+.+++.+|+++.+. |.+++.+ .
T Consensus 86 -----------~-------------------------------------~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~ 117 (137)
T d1m6ia2 86 -----------S-------------------------------------NWTMEKVRREGVKVMPNAIVQSVGVSSGKLL 117 (137)
T ss_dssp -----------H-------------------------------------HHHHHHHHTTTCEEECSCCEEEEEEETTEEE
T ss_pred -----------H-------------------------------------HHHHHHHHhCCcEEEeCCEEEEEEecCCEEE
Confidence 0 011234566678888875 8888654 3
Q ss_pred EEEcCCceeeccEEEEecC
Q 010421 350 LEFEDNTKLEADVVILCTG 368 (511)
Q Consensus 350 v~~~dG~~~~~D~VI~aTG 368 (511)
|+++||+++++|.||+|||
T Consensus 118 v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 118 IKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp EEETTSCEEEESEEEECCC
T ss_pred EEECCCCEEECCEEEEeec
Confidence 8899999999999999999
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.96 E-value=3.8e-09 Score=93.10 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=68.0
Q ss_pred hhhccCeEEEEeCc-eeEEeCC--cEEE---cCCce--eeccEEEEecCCCCcccccccCCCc-ccc-cccCCCCcccce
Q 010421 328 SEAEKGKIVFKRAS-KWWFWKG--GLEF---EDNTK--LEADVVILCTGYDGKKKLKAFLPEP-FQS-LLEHPSGLLPLY 397 (511)
Q Consensus 328 ~~l~~g~v~v~~~~-i~~~~~~--~v~~---~dG~~--~~~D~VI~aTG~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ly 397 (511)
+.+.+.+|+++.+. |.+++.+ +|.+ .+|++ +++|.+|+|||..+........... +.. +...+++.+.+.
T Consensus 64 ~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd 143 (198)
T d1nhpa1 64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTD 143 (198)
T ss_dssp HHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCC
T ss_pred HHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecC
Confidence 45667788888775 8888754 4554 35554 7899999999988653211000000 111 111344555554
Q ss_pred eeecCCCCCceEEEeecccc-----------hhhhhHHHHHHHHHHHhcCCCC
Q 010421 398 RGTIHPLIPNMAFVGYIESV-----------SNLHTAELRSIWLSRLIDDKFK 439 (511)
Q Consensus 398 ~~~~~~~~pnl~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~~~ 439 (511)
.. +.++.||+|++|..... .....|..||+.+|+.|.+..+
T Consensus 144 ~~-~~T~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~ 195 (198)
T d1nhpa1 144 EY-MRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 195 (198)
T ss_dssp TT-CBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC
T ss_pred Cc-ccccccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCC
Confidence 43 34678999999965421 1234678899999999877654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.95 E-value=1.6e-10 Score=93.47 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.3
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+++|+|||+|.+|+|+|..|++.+.. |+++.|++.
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~-----vt~i~~~~~ 56 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRR-----TVMLVRTEP 56 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSCT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchh-----heEeeccch
Confidence 4689999999999999999999988765 999999875
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.95 E-value=4.6e-10 Score=105.50 Aligned_cols=134 Identities=16% Similarity=0.147 Sum_probs=80.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcC-------ccccCC-------------------CcCceeccCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIG-------GIWKSC-------------------SYNSTKLQSHR 55 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~G-------G~w~~~-------------------~~~~~~~~~~~ 55 (511)
+++|+||||||+||++|..| .|++|+|+||++..+ +.+..+ .+.+.......
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~ 81 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG 81 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecc
Confidence 57999999999999999999 999999999986432 111110 00111000000
Q ss_pred CccccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeC
Q 010421 56 SDYEFTDFPWPNRDDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTH 135 (511)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (511)
.......................+.+.|...++..+. .+.++.+++.+... + .+...|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~-~--------------~~~~~v~~~~~ 144 (292)
T d1k0ia1 82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGA--TTVYQAAEVRLHDL-Q--------------GERPYVTFERD 144 (292)
T ss_dssp EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTC--EEESSCEEEEEECT-T--------------SSSCEEEEEET
T ss_pred cccccccccccccccceeecHHHHHHHHHHHHHhCCC--cEEEcceeeeeeee-c--------------cCceEEEEecC
Confidence 0000000000000012234567788888888888776 67777766655542 1 34456766554
Q ss_pred CCCceeEEEeCEEEEeecccC
Q 010421 136 NSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 136 ~~~~~~~~~~d~vVlAtG~~~ 156 (511)
++..++.||.||.|.|.+|
T Consensus 145 --g~~~~i~a~~vVgADG~~S 163 (292)
T d1k0ia1 145 --GERLRLDCDYIAGCDGFHG 163 (292)
T ss_dssp --TEEEEEECSEEEECCCTTC
T ss_pred --CcEEEEEeCEEEECCCCCC
Confidence 3445789999999999885
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.7e-10 Score=92.43 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=34.9
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
..|+|+|||+|.+|+|+|..+++.+.+ ||++.|++. ++|..
T Consensus 21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~-----Vtlv~~~~~-~l~~~ 61 (125)
T d3grsa2 21 LPGRSVIVGAGYIAVEMAGILSALGSK-----TSLMIRHDK-VLRSF 61 (125)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSS-SCTTS
T ss_pred cCCEEEEEcCCccHHHHHHHHhcCCcE-----EEEEeeccc-cccch
Confidence 458999999999999999999998865 999999886 44543
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=2.9e-09 Score=93.24 Aligned_cols=110 Identities=18% Similarity=0.323 Sum_probs=75.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.+||+||||||+||.||..| .|.+|+|+|+... ||.+.... ....+. ++ .......++.
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~-~g~~~~~~----------~i~~~~--~~-----~~~~~~~~~~ 65 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK-GGQLTTTT----------EVENWP--GD-----PNDLTGPLLM 65 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST-TGGGGGCS----------BCCCST--TC-----CSSCBHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc-cccccccc----------hhhhhh--cc-----ccccchHHHH
Confidence 457999999999999999999 8999999998654 44333200 000111 01 2334677888
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.+...+.+++. .+.+ .+|+.+... ++.+.++.... .+.++.+|+|+|..
T Consensus 66 ~~~~~~~~~~~~--~~~~-~~V~~~~~~----------------~~~~~v~~~~~------~~~~~~viva~G~~ 115 (190)
T d1trba1 66 ERMHEHATKFET--EIIF-DHINKVDLQ----------------NRPFRLNGDNG------EYTCDALIIATGAS 115 (190)
T ss_dssp HHHHHHHHHTTC--EEEC-CCEEEEECS----------------SSSEEEEESSC------EEEEEEEEECCCEE
T ss_pred HHHHHHHHhcCc--EEec-ceeEEEecC----------------CCcEEEEEeee------eEeeeeeeeeccee
Confidence 888888888887 4544 468887762 44455554333 78999999999964
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=4.3e-10 Score=95.95 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCC
Q 010421 159 PIIPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 159 p~~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
|+.|+|| |.+. ..++|+.++.. .....+|||+|||||.+|+|+|..+++.+..
T Consensus 2 Pr~p~Ip---G~d~--~~V~~a~d~L~------~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~ 54 (162)
T d1ps9a2 2 PRTPPID---GIDH--PKVLSYLDVLR------DKAPVGNKVAIIGCGGIGFDTAMYLSQPGES 54 (162)
T ss_dssp ECCCCCB---TTTS--TTEEEHHHHHT------SCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred CCCCCCC---CCCC--CCeEEHHHHhh------CccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence 7888888 7653 35888777743 2346799999999999999999999988754
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=1.1e-09 Score=88.68 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 161 IPAFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 161 ~p~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+++| |.+.|.|+-+|.+..++ ...++||+|+|||+|.||+|-|..|++.+. +|++++|++.
T Consensus 3 ~L~ip---ge~~~~gkGV~yca~cD------~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~-----~V~li~r~~~ 64 (126)
T d1fl2a2 3 NMNVP---GEDQYRTKGVTYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVE-----HVTLLEFAPE 64 (126)
T ss_dssp CCCCT---TTTTTBTTTEESCHHHH------GGGGBTCEEEEECCSHHHHHHHHHHHTTBS-----EEEEECSSSS
T ss_pred cCCCC---CHHHhcCCCEEEEEecC------hhhcCCceEEEEeCCHHHHHHHHhhhccCC-----ceEEEecccc
Confidence 45667 88889888777665544 456899999999999999999999998865 4999999875
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.92 E-value=4.7e-10 Score=99.11 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=71.7
Q ss_pred eEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
+|+|||||++|+.+|..| .+.+|+++|+++.+ .|..+.+. .+. .......+++..
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~-------~~~~~~~~------~~l--------~~~~~~~~~~~~ 60 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI-------SFLSAGMQ------LYL--------EGKVKDVNSVRY 60 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS-------SBCGGGHH------HHH--------TTSSCCGGGSBS
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc-------cccccCcc------hhh--------cccccchHHHHH
Confidence 799999999999999999 46789999998665 11111110 000 011111122222
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+.....++.++ .++++++|.+++.. +. .|++.+..+++...+.+|.||+|+|..
T Consensus 61 ~~~~~l~~~gi--~v~~~~~V~~i~~~----------------~~--~v~~~~~~~g~~~~~~~D~li~a~G~~ 114 (198)
T d1nhpa1 61 MTGEKMESRGV--NVFSNTEITAIQPK----------------EH--QVTVKDLVSGEERVENYDKLIISPGAV 114 (198)
T ss_dssp CCHHHHHHTTC--EEEETEEEEEEETT----------------TT--EEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred hhHHHHHHCCc--EEEEeeceeeEeec----------------cc--cceeeecccccccccccceeeEeecce
Confidence 22334456688 89999999999873 11 477777666677789999999999954
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.91 E-value=5.5e-10 Score=89.54 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=42.5
Q ss_pred eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 176 QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 176 ~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
+++.+.+.-.+. ..+++|+|||||.+|+|+|..+++.+.+ ||++.|++. ++|..
T Consensus 8 ~i~~s~~~l~~~-------~~p~~v~IiGgG~ig~E~A~~l~~~G~~-----Vtlve~~~~-il~~~ 61 (117)
T d1ebda2 8 RILDSTGALNLG-------EVPKSLVVIGGGYIGIELGTAYANFGTK-----VTILEGAGE-ILSGF 61 (117)
T ss_dssp SEECHHHHHTCS-------SCCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSSS-SSTTS
T ss_pred CEEChhHhhChh-------hcCCeEEEECCCccceeeeeeecccccE-----EEEEEecce-ecccc
Confidence 577776654432 4568999999999999999999999865 999999986 33443
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.91 E-value=1.9e-10 Score=106.33 Aligned_cols=39 Identities=23% Similarity=0.480 Sum_probs=35.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.|||+||||||+|+.||.++ .|.+|+|+|+ ..+||+|..
T Consensus 1 vyDviVIG~G~aG~~aA~~aa~~G~~V~liE~-~~~GGtc~n 41 (259)
T d1onfa1 1 VYDLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTCVN 41 (259)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEec-CCCCCeEEe
Confidence 38999999999999999999 9999999999 568998754
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=7.2e-10 Score=89.34 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=42.6
Q ss_pred eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 176 QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 176 ~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
++++|.+...+. ...|+++|||+|.+|+|+|..+++.+.+ ||++.|++. ++|..
T Consensus 9 ~v~ts~~~~~l~-------~~p~~~vIiG~G~ig~E~A~~l~~lG~~-----Vtii~~~~~-~l~~~ 62 (122)
T d1v59a2 9 KIVSSTGALSLK-------EIPKRLTIIGGGIIGLEMGSVYSRLGSK-----VTVVEFQPQ-IGASM 62 (122)
T ss_dssp SEECHHHHTTCS-------SCCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSS-SSSSS
T ss_pred EEEehHHhhCcc-------cCCCeEEEECCCchHHHHHHHHHhhCcc-----eeEEEeccc-cchhh
Confidence 477776655432 3568999999999999999999999865 999999886 44544
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.89 E-value=2.3e-09 Score=86.41 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=70.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++++|||||+.|+.+|..| .|.+|+++|+++.+. . -.+++.+
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~--------------------------------~---~d~~~~~ 76 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL--------------------------------G---LDEELSN 76 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT--------------------------------T---CCHHHHH
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEecccccc--------------------------------C---CCHHHHH
Confidence 36899999999999999999 899999999976541 1 1467888
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
++.+..++.|+ .++++++|++++. ++ + +.+++ .+.+|.||+|+|.
T Consensus 77 ~~~~~l~~~GV--~~~~~~~v~~~~~-----------------~~---v-~~~~~-----~i~~D~vi~a~Gv 121 (122)
T d1xhca2 77 MIKDMLEETGV--KFFLNSELLEANE-----------------EG---V-LTNSG-----FIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHHHTTE--EEECSCCEEEECS-----------------SE---E-EETTE-----EEECSCEEEECCE
T ss_pred HHHHHHHHCCc--EEEeCCEEEEEeC-----------------CE---E-EeCCC-----EEECCEEEEEEEe
Confidence 88888888898 8999999988764 21 2 33433 7899999999994
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.88 E-value=1e-08 Score=96.89 Aligned_cols=134 Identities=14% Similarity=0.192 Sum_probs=81.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC------CcCce----------------------eccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC------SYNST----------------------KLQS 53 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~------~~~~~----------------------~~~~ 53 (511)
.+||+|||||++|+++|.+| .|.+|+|+||.+..||.-..+ ..... .++.
T Consensus 16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d 95 (308)
T d1y0pa2 16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 95 (308)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccc
Confidence 47999999999999999999 899999999988777632210 00000 0000
Q ss_pred CC--------------CccccCCCCCCC-----CC-------C-CCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEE
Q 010421 54 HR--------------SDYEFTDFPWPN-----RD-------D-PGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVR 106 (511)
Q Consensus 54 ~~--------------~~~~~~~~~~~~-----~~-------~-~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~ 106 (511)
+. ++..+ ..++.+ .. . ........+...+.+.+.+.++ .++++++|+++.
T Consensus 96 ~~lv~~~~~~~~~~i~~L~~~-Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv--~i~~~~~v~~li 172 (308)
T d1y0pa2 96 PALVKVLSSHSKDSVDWMTAM-GADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNI--DLRMNTRGIEVL 172 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTC--EEESSEEEEEEE
T ss_pred hHHHHHHHHhhhHHHHHHHHc-CCCccccccccccccccccccccccchHHHHHHHHHHHHHhccc--eEEEeeccchhh
Confidence 00 00000 011110 00 0 0111234566666777777888 899999999987
Q ss_pred EcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 107 FTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
..+ +++. -|.+.+.. +....+.++.||+|||.++
T Consensus 173 ~~~---------------~G~V~Gv~~~~~~-~~~~~i~Ak~VVlAtGG~~ 207 (308)
T d1y0pa2 173 KDD---------------KGTVKGILVKGMY-KGYYWVKADAVILATGGFA 207 (308)
T ss_dssp ECT---------------TSCEEEEEEEETT-TEEEEEECSEEEECCCCCT
T ss_pred hhc---------------ccccccccccccc-cceeEeecCeEEEccCccc
Confidence 731 3333 24555544 3345789999999999764
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.87 E-value=4.4e-10 Score=107.88 Aligned_cols=38 Identities=42% Similarity=0.630 Sum_probs=35.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
+.++|+|||||++||+||..| .|++|+|||+++.+||.
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~ 68 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR 68 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCe
Confidence 457999999999999999999 99999999999999984
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.86 E-value=8.4e-09 Score=98.23 Aligned_cols=134 Identities=18% Similarity=0.162 Sum_probs=83.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCcee-----------------------------cc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTK-----------------------------LQ 52 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~-----------------------------~~ 52 (511)
..||+|||+|++||++|..| .|++|+|+||.+..||.-... .-++. +.
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s-~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~ 101 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLA-AGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN 101 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGC-CSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccccc-CCcccccCchhhhhcccCCCHHHHHHHHHhcccccc
Confidence 36999999999999999999 899999999988877642220 00000 00
Q ss_pred CCCCc-------------cccCCCCCCC-----------C--CCCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEE
Q 010421 53 SHRSD-------------YEFTDFPWPN-----------R--DDPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVR 106 (511)
Q Consensus 53 ~~~~~-------------~~~~~~~~~~-----------~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~ 106 (511)
.+... +.--..++.+ . ..........+...+...+.+.++ .++++++|+++.
T Consensus 102 d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv--~i~~~t~v~~li 179 (322)
T d1d4ca2 102 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGT--DIRLNSRVVRIL 179 (322)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTC--EEETTEEEEEEE
T ss_pred CHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCc--eEEEeeeccccc
Confidence 00000 0000111110 0 001122466778888888888888 899999999988
Q ss_pred EcCCCCcccCCCCCCCCCCCce-EEEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 107 FTGSLETTDSGGNLLPAGHPVW-EVAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
... +++. -|.+.+.. +....+.++.||+|||.++
T Consensus 180 ~d~---------------~G~V~Gv~~~~~~-~~~~~i~Ak~VIlAtGG~~ 214 (322)
T d1d4ca2 180 EDA---------------SGKVTGVLVKGEY-TGYYVIKADAVVIAAGGFA 214 (322)
T ss_dssp CCS---------------SSCCCEEEEEETT-TEEEEEECSEEEECCCCCT
T ss_pred ccc---------------cccccceEEEeec-ccEEEEeCCeEEEcCCCcc
Confidence 621 3322 24445443 3345689999999999763
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.84 E-value=5.1e-09 Score=97.52 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=65.0
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCCCcCccccC--CCcCceeccCCCCcccc-CCCCCCCC--CCCCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASDSIGGIWKS--CSYNSTKLQSHRSDYEF-TDFPWPNR--DDPGFPS 75 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~ 75 (511)
.+||+|||||++||+||.+| .|++|+|+|+++.+||.|.. ..|+...+......+.. ...++... .......
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 112 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence 57999999999999999998 49999999999999998875 24555444433221110 01111111 0122234
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEE
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRF 107 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 107 (511)
...+..++..++...+. .+..++++..+..
T Consensus 113 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 142 (278)
T d1rp0a1 113 ALFTSTIMSKLLARPNV--KLFNAVAAEDLIV 142 (278)
T ss_dssp HHHHHHHHHHHHTSTTE--EEEETEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCcceeeee
Confidence 45555666666655544 5777777777666
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=2.1e-09 Score=93.49 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=71.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+||||||+|+.||..+ .|.+++|+|++ +||.+.. .+. ...+.. .....+..+..
T Consensus 1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~-~~~---------~~~~~~--------~~~~~~~~~~~ 60 (184)
T d1fl2a1 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILD-TVD---------IENYIS--------VPKTEGQKLAG 60 (184)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGG-CCE---------ECCBTT--------BSSEEHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccc-ccc---------ceeccc--------cchhhhHHHHH
Confidence 37999999999999999999 99999999985 6776554 110 001111 11124567777
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.++..+++++. .......+..+..... ....+.....+.. ++.++.+++++|..
T Consensus 61 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~~~~g~~ 114 (184)
T d1fl2a1 61 ALKVHVDEYDV--DVIDSQSASKLIPAAV-------------EGGLHQIETASGA-----VLKARSIIVATGAK 114 (184)
T ss_dssp HHHHHHHTSCE--EEECSCCEEEEECCSS-------------TTCCEEEEETTSC-----EEEEEEEEECCCEE
T ss_pred HHHHHhhheec--eeeccceeeeeccccc-------------ccceeeeeeecce-----eeeccccccccccc
Confidence 77777887765 4555556666665311 0122222222222 78899999999964
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.81 E-value=1.9e-08 Score=95.44 Aligned_cols=135 Identities=24% Similarity=0.255 Sum_probs=83.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCC--CcC--ceec-------cCCCCc-------------
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSC--SYN--STKL-------QSHRSD------------- 57 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~--~~~--~~~~-------~~~~~~------------- 57 (511)
.+||+|||||++||+||.++ .|.+|+|+||.+..||.-... .+. +... +++...
T Consensus 19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d 98 (317)
T d1qo8a2 19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND 98 (317)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccc
Confidence 47999999999999999999 999999999988776532110 000 0000 000000
Q ss_pred -----------------cccCCCCCCC-----C--C------CCCCCChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEE
Q 010421 58 -----------------YEFTDFPWPN-----R--D------DPGFPSYTEILDYLESYAKHFDVFKCVRFNSKVVEVRF 107 (511)
Q Consensus 58 -----------------~~~~~~~~~~-----~--~------~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 107 (511)
+.--..++.. . . .....++..+.+.|...+++.+. .++++++|+++..
T Consensus 99 ~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~--~i~~~~~v~~l~~ 176 (317)
T d1qo8a2 99 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGI--DTRLNSRVVKLVV 176 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTC--CEECSEEEEEEEE
T ss_pred hhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccc--eeeeccchhheee
Confidence 0000011110 0 0 01123456788889988999988 8999999999876
Q ss_pred cCCCCcccCCCCCCCCCCCceE-EEEEeCCCCceeEEEeCEEEEeecccC
Q 010421 108 TGSLETTDSGGNLLPAGHPVWE-VAVQTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.. +++.. |.+.+.+ +....+.++.||+|||.++
T Consensus 177 ~~---------------~g~V~Gv~~~~~~-~~~~~i~Ak~VVlAtGG~~ 210 (317)
T d1qo8a2 177 ND---------------DHSVVGAVVHGKH-TGYYMIGAKSVVLATGGYG 210 (317)
T ss_dssp CT---------------TSBEEEEEEEETT-TEEEEEEEEEEEECCCCCT
T ss_pred cc---------------cccceeeEeeccc-ceEEEEeccceEEeccccc
Confidence 31 33322 4444433 4455789999999999763
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.80 E-value=7e-09 Score=90.87 Aligned_cols=114 Identities=15% Similarity=0.192 Sum_probs=74.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.+||+||||||+|+.||..| .|++++|+|+.......... .+......-.+.. ........++..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~------~~~~~~~~~~~~~-------~~~~~~~~el~~ 71 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGG------QLTTTTDVENFPG-------FPEGILGVELTD 71 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTC------GGGGCSEECCSTT-------CTTCEEHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccccccccc------ccccchhhhcccc-------ccccccchHHHH
Confidence 58999999999999999999 89999999986543211000 0000000000110 123346788888
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
.++..+++++. .+.+. +|.+++.. ...+.+..... ...+|.+++|+|..
T Consensus 72 ~~~~q~~~~g~--~i~~~-~V~~~~~~----------------~~~~~v~~~~~------~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 72 KFRKQSERFGT--TIFTE-TVTKVDFS----------------SKPFKLFTDSK------AILADAVILAIGAV 120 (192)
T ss_dssp HHHHHHHHTTC--EEECC-CCCEEECS----------------SSSEEEECSSE------EEEEEEEEECCCEE
T ss_pred HHHHHHHhhcc--eeeee-eEEecccc----------------cCcEEecccce------eeeeeeEEEEeeee
Confidence 88888999987 66554 68887762 23344543322 68899999999965
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.80 E-value=1.5e-08 Score=94.04 Aligned_cols=133 Identities=16% Similarity=0.078 Sum_probs=76.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCc------------------------CceeccCCCC-
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSY------------------------NSTKLQSHRS- 56 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~------------------------~~~~~~~~~~- 56 (511)
.||+|||||++||++|..| .|+ +|+|+|+++.++..+..... ..........
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 81 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence 6999999999999999999 886 89999999887644332000 0000000000
Q ss_pred -ccccCCCCCCCCC-CCCCCChHHHHHHHHHHH--HhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEE
Q 010421 57 -DYEFTDFPWPNRD-DPGFPSYTEILDYLESYA--KHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAV 132 (511)
Q Consensus 57 -~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~~--~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (511)
...+......... .............+.... ...+. .+.++++|+.+... ++.+.|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~----------------~~~v~v~~ 143 (288)
T d3c96a1 82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ--AVRTGLGVERIEER----------------DGRVLIGA 143 (288)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTT--SEEESEEEEEEEEE----------------TTEEEEEE
T ss_pred EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCe--eeecCcEEEEeeec----------------CCcEEEEE
Confidence 0001000000000 011112222222222222 22344 78999999988873 55677888
Q ss_pred EeCCCCceeEEEeCEEEEeecccC
Q 010421 133 QTHNSNSIQRYGFEFLVVCTGKYG 156 (511)
Q Consensus 133 ~~~~~~~~~~~~~d~vVlAtG~~~ 156 (511)
.++. ++..++.+|.||.|.|.+|
T Consensus 144 ~~g~-~~~~~~~ad~vi~ADG~~S 166 (288)
T d3c96a1 144 RDGH-GKPQALGADVLVGADGIHS 166 (288)
T ss_dssp EETT-SCEEEEEESEEEECCCTTC
T ss_pred EcCC-CCeEEEeeceeeccCCccc
Confidence 8764 4445799999999999875
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.80 E-value=6.7e-09 Score=98.00 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCc-eEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 75 SYTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPV-WEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 75 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
....+...+.+.+++.++ .++++++|+++... +++ +.|.+.++ ++.||+||+|+|
T Consensus 146 ~p~~l~~~l~~~a~~~gv--~i~~~~~V~~i~~~----------------~~~v~~V~T~~g------~i~a~~VV~aaG 201 (305)
T d1pj5a2 146 SAARAVQLLIKRTESAGV--TYRGSTTVTGIEQS----------------GGRVTGVQTADG------VIPADIVVSCAG 201 (305)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEE----------------TTEEEEEEETTE------EEECSEEEECCG
T ss_pred chhhhhhhHHhhhhcccc--cccCCceEEEEEEe----------------CCEEEEEeccce------eEECCEEEEecc
Confidence 455666667777778888 89999999999984 333 33554333 799999999999
Q ss_pred ccC
Q 010421 154 KYG 156 (511)
Q Consensus 154 ~~~ 156 (511)
.++
T Consensus 202 ~~s 204 (305)
T d1pj5a2 202 FWG 204 (305)
T ss_dssp GGH
T ss_pred hhH
Confidence 864
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.79 E-value=2.3e-09 Score=86.49 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=42.3
Q ss_pred eEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 176 QVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 176 ~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
.++.+.+...+. ..+++++|||+|.+|+|+|..+++.+.+ ||++.|++.. +|..
T Consensus 11 ~v~ts~~~l~l~-------~~p~~~viiG~G~iglE~A~~~~~~G~~-----Vtvi~~~~~~-l~~~ 64 (123)
T d1dxla2 11 KIVSSTGALALS-------EIPKKLVVIGAGYIGLEMGSVWGRIGSE-----VTVVEFASEI-VPTM 64 (123)
T ss_dssp SEECHHHHTTCS-------SCCSEEEESCCSHHHHHHHHHHHHHTCE-----EEEECSSSSS-STTS
T ss_pred eEEeHHHhhCcc-------ccCCeEEEEccchHHHHHHHHHHhcCCe-----EEEEEEcccc-Cchh
Confidence 466666555432 4578999999999999999999999875 9999999874 3543
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=1.2e-09 Score=88.50 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=47.6
Q ss_pred CCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 169 GPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 169 g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
|.+.|.|+-+|.+..++ ...+++|+|+|||+|.||+|-|..|++.+. +|++++|++.
T Consensus 5 ge~~~~gkgV~yca~cD------~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~-----~V~li~r~~~ 61 (126)
T d1trba2 5 SEEAFKGRGVSACATSD------GFFYRNQKVAVIGGGNTAVEEALYLSNIAS-----EVHLIHRRDG 61 (126)
T ss_dssp HHHHTBTTTEESCHHHH------GGGGTTSEEEEECSSHHHHHHHHHHTTTSS-----EEEEECSSSS
T ss_pred CHHHhcCCCEEEEEecc------hHHhCCCEEEEECCCHHHHHHHHHHhhcCC-----cEEEEeeccc
Confidence 77788888777655554 456899999999999999999999998765 5999999875
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.4e-09 Score=104.95 Aligned_cols=37 Identities=43% Similarity=0.673 Sum_probs=34.6
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
||+|||||++||+||..| .|++|+|+|+++.+||...
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~ 39 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY 39 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCC
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceee
Confidence 799999999999999999 9999999999999999543
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.75 E-value=1.5e-09 Score=92.94 Aligned_cols=156 Identities=18% Similarity=0.294 Sum_probs=86.2
Q ss_pred eEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHHHHH
Q 010421 6 KIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILDYLE 84 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~ 84 (511)
+|+|||||++|+.+|..| .+.+|+|+|+++.+ .|....+ ..+. ......+.+..+..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~-------~~~~~~~------~~~~---------~~~~~~~~~~~~~~ 59 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVP-------YYSKPML------SHYI---------AGFIPRNRLFPYSL 59 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTTTSEEEEECSSSSC-------CCCSTTH------HHHH---------TTSSCGGGGCSSCH
T ss_pred eEEEECCcHHHHHHHHHHHcCCCEEEEeccccc-------cccccch------hhhh---------hhhhhhhhhhHHHH
Confidence 799999999999999999 88899999987543 1110000 0000 01111122222223
Q ss_pred HHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecccCCCCCCCCC
Q 010421 85 SYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKYGDVPIIPAF 164 (511)
Q Consensus 85 ~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~~~~p~~p~~ 164 (511)
.+.++.++ .++++++|+.++.. . .+...++. ++.||.||+|+|.. |..+
T Consensus 60 ~~~~~~~v--~~~~~~~v~~i~~~-----------------~--~~~~~~~~-----~i~~D~li~a~G~~---~~~~-- 108 (167)
T d1xhca1 60 DWYRKRGI--EIRLAEEAKLIDRG-----------------R--KVVITEKG-----EVPYDTLVLATGAP---NVDL-- 108 (167)
T ss_dssp HHHHHHTE--EEECSCCEEEEETT-----------------T--TEEEESSC-----EEECSEEEECCCEE---CCHH--
T ss_pred HHHHhccc--eeeeeccccccccc-----------------c--cccccccc-----ccccceeEEEEEec---CCch--
Confidence 34445566 67888899988752 1 14444544 79999999999954 3211
Q ss_pred CCCCCCCcccceEEeccccCccchhhhhhccC-----CCcEEEECCCCCHHHHHHHHHHh
Q 010421 165 PNNKGPEVFEGQVLHSIDYCKLDKEAASQLLK-----DKKVAVVGFKKSAIDLAKECAES 219 (511)
Q Consensus 165 ~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~-----~k~V~VvG~G~sg~d~a~~l~~~ 219 (511)
....|++.-.+ +.....++... +..+. ..+..|+|++..|++.|..+++.
T Consensus 109 ~~~~gl~~~~~-i~v~~~~~t~~----~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~ 163 (167)
T d1xhca1 109 ARRSGIHTGRG-ILIDDNFRTSA----KDVYAIGDCAEYSGIIAGTAKAAMEQARVLADI 163 (167)
T ss_dssp HHHTTCCBSSS-EECCTTSBCSS----TTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHH
T ss_pred hhhcCceeCCc-eeeccccEecC----CCeEEeeecccCCCeEEChHHHHHHHHHHHHHH
Confidence 11113332222 22222222111 11111 12334677888898888877763
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.73 E-value=6.8e-09 Score=83.43 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=34.3
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCceeecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWTVPHY 242 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~~p~~ 242 (511)
..+++++|||+|.+|+|+|..+++.+.+ ||++.|++ ++|..
T Consensus 18 ~~P~~vvIIGgG~iG~E~A~~l~~lG~~-----Vtii~~~~--~l~~~ 58 (122)
T d1h6va2 18 YCPGKTLVVGASYVALECAGFLAGIGLD-----VTVMVRSI--LLRGF 58 (122)
T ss_dssp SCCCSEEEECCSHHHHHHHHHHHHTTCC-----EEEEESSS--SSTTS
T ss_pred cCCCeEEEECCCccHHHHHHHHhhcCCe-----EEEEEech--hhccC
Confidence 4568999999999999999999999876 99998753 45544
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=2e-08 Score=89.07 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=29.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.|||+|||||+||+.||..+ .|.+++|++++-
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~ 35 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL 35 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence 58999999999999999999 899999999863
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.71 E-value=6.2e-08 Score=92.51 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeeccc
Q 010421 76 YTEILDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGKY 155 (511)
Q Consensus 76 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~~ 155 (511)
+..+..-+.+.+++.++ .+..+++++++...+ +...-+.+.+..+++...+.++.||+|||.+
T Consensus 157 G~~i~~~l~~~~~~~gv--~i~~~~~~~~li~~~---------------~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~ 219 (336)
T d2bs2a2 157 GHTMLFAVANECLKLGV--SIQDRKEAIALIHQD---------------GKCYGAVVRDLVTGDIIAYVAKGTLIATGGY 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTC--EEECSEEEEEEEEET---------------TEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHHhccc--cccceeeeeeccccc---------------ccccceeEEeccCCcEEEEecCeEEEecccc
Confidence 56677777777888888 899999998887631 2223355566666777789999999999965
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=4.9e-09 Score=95.93 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=40.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|++.+||+|||||++|++||..| .|++|+|+|+++.+||.++.
T Consensus 2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t 46 (297)
T d2bcgg1 2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 46 (297)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEE
Confidence 88899999999999999999999 99999999999999997754
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.68 E-value=1.4e-08 Score=90.79 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=38.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
..+||+||||||+|+++|..+ .|.+|+|+|++..+||.|..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~ 44 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN 44 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeec
Confidence 469999999999999999999 89999999999999998754
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.67 E-value=2.6e-07 Score=84.74 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=60.9
Q ss_pred EEEcCCceeeccEEEEecCCCCcccccccCCCc-----ccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhH
Q 010421 350 LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEP-----FQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTA 423 (511)
Q Consensus 350 v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~ 423 (511)
.+..+|+++++|.||+|||.+|+.+..+..+.. ..++..++.+.+.+...+ .++.|++|++|.... +...+.|
T Consensus 164 ~v~~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~-~Ts~~~IyA~GDv~~~~~l~~~A 242 (261)
T d1mo9a1 164 TVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYL-QTSVPNVYAVGDLIGGPMEMFKA 242 (261)
T ss_dssp EEEETTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTS-BCSSTTEEECGGGGCSSCSHHHH
T ss_pred ccccccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCCCc-ccCCCCEEEEEEeCCCcccHHHH
Confidence 334578889999999999999986533211100 012223566666666544 468899999998754 4456789
Q ss_pred HHHHHHHHHHhcCC
Q 010421 424 ELRSIWLSRLIDDK 437 (511)
Q Consensus 424 e~qa~~~a~~l~g~ 437 (511)
..|++.+|..+.|+
T Consensus 243 ~~~G~~aa~~i~G~ 256 (261)
T d1mo9a1 243 RKSGCYAARNVMGE 256 (261)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999999885
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.65 E-value=2e-08 Score=92.47 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=37.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+.+|++|||||++|+.+|..+ .|.+|+++|+.+.+||++..
T Consensus 41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n 83 (261)
T d1mo9a1 41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPH 83 (261)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccc
Confidence 468999999999999999999 89999999999999997643
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.7e-09 Score=96.59 Aligned_cols=126 Identities=15% Similarity=0.203 Sum_probs=69.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--c--CCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCC---------CCCCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--R--HHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTD---------FPWPNRD 69 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 69 (511)
..++++|||||++|+.+|..| . ..+|+++++...+ .|....+ ++....-.. ..+....
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~-------py~r~~L--s~~~~~~~~~~~~~~~~~~~~~~~~ 73 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL-------PYMRPPL--SKELWFSDDPNVTKTLRFKQWNGKE 73 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC-------CBCSGGG--GTGGGCC--CTHHHHCEEECTTSCE
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC-------Ccccccc--ceecccccCchhhhhhhhhhcccch
Confidence 457899999999999999999 3 4569999987544 2221111 111100000 0000000
Q ss_pred CCCCCChHHH--HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCE
Q 010421 70 DPGFPSYTEI--LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEF 147 (511)
Q Consensus 70 ~~~~~~~~~~--~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 147 (511)
...+....++ ......+.++.++ .++++++|++|+.. +. +|++.++. ++.||.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~gI--~~~~g~~V~~id~~----------------~~--~V~l~dG~-----~i~~d~ 128 (213)
T d1m6ia1 74 RSIYFQPPSFYVSAQDLPHIENGGV--AVLTGKKVVQLDVR----------------DN--MVKLNDGS-----QITYEK 128 (213)
T ss_dssp EESBSSCGGGSBCTTTTTTSTTCEE--EEEETCCEEEEEGG----------------GT--EEEETTSC-----EEEEEE
T ss_pred hhhhcCChhhhhhhhhHHHHHHCCe--EEEeCCEEEEeecc----------------Cc--eeeeccce-----eeccce
Confidence 0000000000 0001112344566 78899999999873 11 57777765 899999
Q ss_pred EEEeecccCCCCCCCCCC
Q 010421 148 LVVCTGKYGDVPIIPAFP 165 (511)
Q Consensus 148 vVlAtG~~~~~p~~p~~~ 165 (511)
||+|||. .|+.+.++
T Consensus 129 lViAtG~---~~~~~~l~ 143 (213)
T d1m6ia1 129 CLIATGG---TEPNVELA 143 (213)
T ss_dssp EEECCCE---EEECCTTH
T ss_pred EEEeeee---ecchhhhh
Confidence 9999995 34444444
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.60 E-value=8.6e-09 Score=86.99 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=48.8
Q ss_pred eecccCCCCCCC-CCCCCCCCCcccceEEeccccCccchhhhhhccCCCcEEEE--CCCCCHHHHHHHHHHhcCCCCCCc
Q 010421 151 CTGKYGDVPIIP-AFPNNKGPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVV--GFKKSAIDLAKECAESNQGPEGQP 227 (511)
Q Consensus 151 AtG~~~~~p~~p-~~~~~~g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~Vv--G~G~sg~d~a~~l~~~~~~~~~~~ 227 (511)
|||. .|..| ++| |.+.-...++.+.+... .....+++|+|+ |+|..|+|+|..|++.+.+
T Consensus 4 atG~---~~~~~~pip---G~~~~~~~v~t~~d~l~------~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~----- 66 (156)
T d1djqa2 4 TDGT---NCLTHDPIP---GADASLPDQLTPEQVMD------GKKKIGKRVVILNADTYFMAPSLAEKLATAGHE----- 66 (156)
T ss_dssp SSCC---CTTTSSCCT---TCCTTSTTEECHHHHHH------TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCE-----
T ss_pred CCCC---CCCCCCCCC---CccCCCCEEECHHHHhc------CccccCCceEEEecCCChHHHHHHHHHHHcCCe-----
Confidence 7884 56665 578 66543334666665533 223456677776 9999999999999999865
Q ss_pred EEEEEecCc
Q 010421 228 CTMIVRTTH 236 (511)
Q Consensus 228 Vtl~~R~~~ 236 (511)
||++.+.+.
T Consensus 67 Vtlv~~~~~ 75 (156)
T d1djqa2 67 VTIVSGVHL 75 (156)
T ss_dssp EEEEESSCT
T ss_pred EEEEecCCc
Confidence 999999763
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.55 E-value=1.9e-08 Score=94.95 Aligned_cols=48 Identities=44% Similarity=0.598 Sum_probs=41.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceecc
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQ 52 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~ 52 (511)
|+|+|||||++||+||..| .|++|+|||+++.+||.......++..++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d 51 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWD 51 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEEe
Confidence 7899999999999999999 99999999999999997665455555544
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=1.8e-07 Score=88.15 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG 39 (511)
.+||+|||+|+|||+||.++ .+.+|+|+||....+|
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g 44 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS 44 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC
Confidence 47999999999999999998 4789999999765543
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=1.1e-08 Score=92.24 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=40.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
|++++||+||||||||++||.++ .|.+|+|+|+++.+||+|..
T Consensus 2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~ 46 (233)
T d1v59a1 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN 46 (233)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEE
Confidence 67789999999999999999999 89999999999999998764
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.48 E-value=5.3e-07 Score=81.07 Aligned_cols=91 Identities=16% Similarity=0.048 Sum_probs=58.9
Q ss_pred EEEcCCc--eeeccEEEEecCCCCcccccc------cCCCcccccccCCCCcccceeeecCCCCCceEEEeecccch-hh
Q 010421 350 LEFEDNT--KLEADVVILCTGYDGKKKLKA------FLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVS-NL 420 (511)
Q Consensus 350 v~~~dG~--~~~~D~VI~aTG~~~~~~~~~------~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~-~~ 420 (511)
++..||+ ++++|.||+|||.++...... -+..+..++..+..+.+.+..++ .++.|++|++|...... ..
T Consensus 132 v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~-~T~~~gIyA~GDv~~~~~l~ 210 (233)
T d1xdia1 132 ATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRVS-RTLATGIYAAGDCTGLLPLA 210 (233)
T ss_dssp EECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCCCSSS-BCSSTTEEECSGGGTSCSCH
T ss_pred EEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcccCCCcCCcCCCc-ccCCCCEEEEEEeCCCchhH
Confidence 3445675 489999999999988643211 11111111122344556565543 47789999999876543 35
Q ss_pred hhHHHHHHHHHHHhcCCCCCC
Q 010421 421 HTAELRSIWLSRLIDDKFKLP 441 (511)
Q Consensus 421 ~~~e~qa~~~a~~l~g~~~lp 441 (511)
+.+..|++.+|..+.|+...|
T Consensus 211 ~~A~~~g~~aa~~~~g~~~~p 231 (233)
T d1xdia1 211 SVAAMQGRIAMYHALGEGVSP 231 (233)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCCC
Confidence 689999999999998865544
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.47 E-value=4.8e-07 Score=80.50 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=62.6
Q ss_pred ccCeEEEEeCceeEEeCCcEEE----cCCceeeccEEEEecCCCCc--ccccccCCCcccccccCCCCcccceeeecCCC
Q 010421 331 EKGKIVFKRASKWWFWKGGLEF----EDNTKLEADVVILCTGYDGK--KKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPL 404 (511)
Q Consensus 331 ~~g~v~v~~~~i~~~~~~~v~~----~dG~~~~~D~VI~aTG~~~~--~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~ 404 (511)
.+.+|++......-.....+.. .++..+.+|.||+|||.++. .|..+.+..+-.++..++.+.+.+... +.++
T Consensus 104 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~-~~T~ 182 (221)
T d1dxla1 104 KKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNER-FSTN 182 (221)
T ss_dssp HHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBCSSSCBCCCTT-CBCS
T ss_pred hcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccCccccCCCCChHhcCceEcCCCcEEeCCC-cccC
Confidence 3344555554433333333222 23445899999999996542 111111211111222245555555543 4578
Q ss_pred CCceEEEeeccc-chhhhhHHHHHHHHHHHhcCCC
Q 010421 405 IPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 405 ~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.|++|++|.... +.....|..|++.+|..|.|+.
T Consensus 183 v~gi~A~GDv~~g~~l~~~A~~~g~~aa~~i~g~~ 217 (221)
T d1dxla1 183 VSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKV 217 (221)
T ss_dssp STTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 899999998765 3345789999999999998864
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.47 E-value=3.8e-08 Score=90.73 Aligned_cols=49 Identities=29% Similarity=0.606 Sum_probs=41.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCCCcCccccCCCcCceeccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASDSIGGIWKSCSYNSTKLQS 53 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~ 53 (511)
.||+|||||++||+||..| .|+ +|+|||+++.+||.+.....++..++.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~ 52 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVEL 52 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEES
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEEEec
Confidence 4899999999999999999 886 799999999999987654555555443
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=5.2e-08 Score=91.44 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=37.0
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+||+|||||+|||+||..| .|.+|+|+|+++++||.+..
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t 42 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence 7999999999999999999 89999999999999998765
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=6.5e-07 Score=85.06 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=32.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG 39 (511)
.+||+|||+|+|||.||.++ .|.+|+|+||....||
T Consensus 7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg 44 (330)
T d1neka2 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS 44 (330)
T ss_dssp EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS
T ss_pred cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 47999999999999999999 8999999999876654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=6.9e-08 Score=92.49 Aligned_cols=47 Identities=38% Similarity=0.532 Sum_probs=39.4
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCce
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNST 49 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~ 49 (511)
+..+|+|||||+|||+||..| .|++|+|+|+++.+||.......++.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~ 52 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNY 52 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCE
Confidence 457899999999999999999 99999999999999996544233333
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.39 E-value=8.6e-08 Score=90.54 Aligned_cols=40 Identities=38% Similarity=0.539 Sum_probs=37.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.++|+|||||++||+||..| .|++|+|+|+++++||.+..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t 43 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 43 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeE
Confidence 57999999999999999999 78999999999999997644
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.38 E-value=2.7e-08 Score=86.22 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=27.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
|+.+|+|||||++|+.+|..| .+.++.|++..+..
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~ 38 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA 38 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEeccc
Confidence 346799999999999999999 77776666654433
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.37 E-value=1.8e-07 Score=75.45 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCCcccceEEeccccCccchhhhhhccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 169 GPEVFEGQVLHSIDYCKLDKEAASQLLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 169 g~~~~~g~~~hs~~~~~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+.+.|.|+-+|.+..++-. ...+++|+|+|||+|.||+|-|..|++.+. +||+++|++.
T Consensus 10 ~~~~f~gkGVsyca~CDg~----a~~frgk~V~VvGgGdsA~e~A~~L~~~a~-----~V~li~r~~~ 68 (130)
T d1vdca2 10 VLGGFWNRGISACAVCDGA----APIFRNKPLAVIGGGDSAMEEANFLTKYGS-----KVYIIHRRDA 68 (130)
T ss_dssp SSSCCBTTTEESCHHHHTT----SGGGTTSEEEEECCSHHHHHHHHHHTTTSS-----EEEEECSSSS
T ss_pred ccccccCCcEEEEEEecCc----hHHhCCCEEEEEcCchHHHHHHHHHhCCCC-----cEEEEEeccc
Confidence 3445777777766554410 136899999999999999999999998865 4999999875
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.36 E-value=1.3e-08 Score=87.98 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=29.6
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~ 37 (511)
.++|+|||||++|+.+|..| ...+|+|+|+++.+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~ 39 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY 39 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence 47999999999999999999 34689999998754
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.36 E-value=1.9e-06 Score=82.58 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHhc------cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL------RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l------~g~~v~v~e~~~~~GG~ 40 (511)
.+||+|||+|+|||+||.+| .|++|+|+||....||.
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~ 63 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG 63 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence 37999999999999999987 58999999997766543
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.32 E-value=1.1e-06 Score=78.81 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.|||+||||||+|++||.++ .|.+|+|+|+...
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~ 37 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP 37 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 58999999999999999999 9999999998554
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.30 E-value=4.8e-07 Score=81.37 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=32.4
Q ss_pred CeEEEECCCHHHHHHHHhc-----cCCCcEEEcCCCCcCccccC
Q 010421 5 SKIAIIGAGVSGLAAVKQL-----RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l-----~g~~v~v~e~~~~~GG~w~~ 43 (511)
.+|+||||||+|++||..+ .+.+|+++|+ ..+||+|..
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln 44 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVL 44 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeec
Confidence 5899999999999999876 4568999998 679998653
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.25 E-value=5e-06 Score=73.70 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=65.0
Q ss_pred hhhccCeEEEEeCceeEEeCCcEEEcCCceeeccEEEEecCCCCccc-ccccC-CCccccccc-CCCCcccceeeecCCC
Q 010421 328 SEAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKK-LKAFL-PEPFQSLLE-HPSGLLPLYRGTIHPL 404 (511)
Q Consensus 328 ~~l~~g~v~v~~~~i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~-~~~~~-~~~~~~~~~-~~~~~~~ly~~~~~~~ 404 (511)
.......+++..+... +........++.++.+|.||+|||.+|... ..... ......+.. ...+.+.+..+ +.++
T Consensus 104 ~~~~~~~v~~i~G~~~-~~~~~~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~~~g~i~vd~~-~~T~ 181 (220)
T d1lvla1 104 ALLKKHGVKVVHGWAK-VLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDER-CQTS 181 (220)
T ss_dssp HHHHHTTCEEECSCEE-EEETTEEEETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCEETTEECCCTT-CBCS
T ss_pred hhhccCceEEEEeeec-ccCcccccccceeEeeceeeEcCCCCcccccccccccCCcceeeehhhcCCcccccch-hhcC
Confidence 3445556666666532 222233345667899999999999987531 11100 011111100 12233434333 2367
Q ss_pred CCceEEEeecccc-hhhhhHHHHHHHHHHHhcCCCC
Q 010421 405 IPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDKFK 439 (511)
Q Consensus 405 ~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~~ 439 (511)
.|++|++|..... ...+.+..|++.+|..+.|+.+
T Consensus 182 ~~~I~A~GDv~~~~~l~~~a~~~g~~~a~~i~G~~~ 217 (220)
T d1lvla1 182 MHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKAR 217 (220)
T ss_dssp STTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEeCCcccchhhhhhhHHHHHHHHcCCCC
Confidence 8999999987653 4457899999999999998754
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=1.2e-06 Score=82.23 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCCCcCcc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~~GG~ 40 (511)
.+||+|||+|+|||+||.++ .+.+|+|+||.+..||.
T Consensus 7 ~~DVvVVG~G~AGl~AA~~a~~~g~V~llEK~~~~gG~ 44 (305)
T d1chua2 7 SCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGS 44 (305)
T ss_dssp ECSEEEECCSHHHHHHHHHHTTTSCEEEECSSCTTC--
T ss_pred cCCEEEECccHHHHHHHHHhhcCCCEEEEECCCCCCCc
Confidence 58999999999999999999 44499999998877664
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.23 E-value=2.8e-07 Score=82.75 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=36.6
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
.|||+||||||+||+||..| .|.+|+|||+...+||++..
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~ 47 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN 47 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence 48999999999999999999 89999999999999987543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.21 E-value=4.5e-07 Score=82.70 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=34.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIW 41 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w 41 (511)
|+..++|+|||||++||++|..| .|++|+|+||+...+|.+
T Consensus 3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~s 45 (268)
T d1c0pa1 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSS 45 (268)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTC
T ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCcc
Confidence 55678999999999999999999 899999999976444443
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.17 E-value=5.4e-07 Score=80.40 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=34.2
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcc
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGI 40 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~ 40 (511)
+++|||+|||||||||+||.++ .|.+|+|+|+....++.
T Consensus 1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~ 41 (229)
T d3lada1 1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK 41 (229)
T ss_dssp CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSS
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcc
Confidence 3679999999999999999999 99999999997655443
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.12 E-value=1.2e-06 Score=75.36 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
...+|+|||||++|+.+|..| .+.+++|++..+..
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~ 38 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT 38 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence 467999999999999999999 78888888876554
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=98.11 E-value=7e-06 Score=78.80 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=28.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.||||||+|++|+.+|.+| .|++|+|+|+..
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 4899999999999999999 999999999953
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.09 E-value=1.5e-05 Score=70.48 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=61.7
Q ss_pred hccCeEEEEeCceeEEeCCc--EEEc-CCceeeccEEEEec--------CCCCcccccccCCCcccccccCCCCccccee
Q 010421 330 AEKGKIVFKRASKWWFWKGG--LEFE-DNTKLEADVVILCT--------GYDGKKKLKAFLPEPFQSLLEHPSGLLPLYR 398 (511)
Q Consensus 330 l~~g~v~v~~~~i~~~~~~~--v~~~-dG~~~~~D~VI~aT--------G~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~ 398 (511)
....+|++..+.-.-..... +... ++..+.+|.+|.|+ |.+|+...+ ..+-.++..++.+.+.+..
T Consensus 101 ~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l---~l~~~gv~~~~~G~I~vd~ 177 (223)
T d1ebda1 101 LKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDEL---GLEQIGIKMTNRGLIEVDQ 177 (223)
T ss_dssp HHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSS---STTTTTCCBCTTSCBCCCT
T ss_pred hhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccccccceecCCCC---ChHhcCceECCCCCEeECC
Confidence 34445666555321112222 2223 34458899999987 444443321 1111112224555666665
Q ss_pred eecCCCCCceEEEeecccch-hhhhHHHHHHHHHHHhcCCC
Q 010421 399 GTIHPLIPNMAFVGYIESVS-NLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 399 ~~~~~~~pnl~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~ 438 (511)
+ +.++.|++|++|...... ..+.|..|++.+|..+.|+.
T Consensus 178 ~-~~T~~~gvyA~GDv~~~~~~~~~A~~~g~~aa~~i~g~~ 217 (223)
T d1ebda1 178 Q-CRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHP 217 (223)
T ss_dssp T-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSCC
T ss_pred C-CCCCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 4 357899999999876543 35678999999999999864
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.07 E-value=3.1e-06 Score=70.24 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.6
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+++|+|||||.||+|.|..+.+.++ ++|++++|++.
T Consensus 43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA----~~V~vi~rr~~ 80 (153)
T d1gtea3 43 SIRGAVIVLGAGDTAFDCATSALRCGA----RRVFLVFRKGF 80 (153)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTC----SEEEEECSSCG
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCC----cceeEEEeCCh
Confidence 457789999999999999999999875 36999999764
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.05 E-value=7.6e-07 Score=86.16 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--------cCCCcEEEcCCCCcCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--------RHHNPVVFEASDSIGG 39 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--------~g~~v~v~e~~~~~GG 39 (511)
.+||+||||||||++||+.| .|++|+|+||...+|.
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~ 75 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA 75 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTT
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCC
Confidence 48999999999999999988 4899999999988764
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.04 E-value=7.9e-07 Score=79.09 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=35.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+.+||+||||||+|+.+|..+ .|.+|+|+|++ .+||+|..
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~ 45 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLN 45 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHH
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcccc
Confidence 468999999999999999999 99999999995 68998654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.03 E-value=1e-06 Score=78.39 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=35.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
..+||+||||||+|++||..+ .|.+|+|+|+ ..+||++..
T Consensus 2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk-~~~GG~~~~ 43 (223)
T d1ebda1 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVCLN 43 (223)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-CCCCcceec
Confidence 358999999999999999999 8999999999 567887654
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.00 E-value=1.2e-05 Score=69.52 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=29.3
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.++|+|||||++|++.|..+++.+.+ |.++.+..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~-----v~vie~~~ 38 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELK-----PLLFEGWM 38 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC-----CEEECCSS
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCc-----EEEEEeec
Confidence 47899999999999999999998765 88887654
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.7e-05 Score=70.03 Aligned_cols=108 Identities=12% Similarity=-0.001 Sum_probs=65.7
Q ss_pred hhhccCeEEEEeCceeEEeCCcEEE-cCCceeeccEEEEecCCCCccccc-----ccCCCcccccccCCCCcccceeeec
Q 010421 328 SEAEKGKIVFKRASKWWFWKGGLEF-EDNTKLEADVVILCTGYDGKKKLK-----AFLPEPFQSLLEHPSGLLPLYRGTI 401 (511)
Q Consensus 328 ~~l~~g~v~v~~~~i~~~~~~~v~~-~dG~~~~~D~VI~aTG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ly~~~~ 401 (511)
..+.+.+|++..+.-.....+.+.. .+..++.+|.++.+||..+..+.. +.+..+-.++..++.+.+.+..+ .
T Consensus 99 ~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~~~~~G~I~vd~~-~ 177 (221)
T d3grsa1 99 NNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEF-Q 177 (221)
T ss_dssp HHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCCBCTTSCBCCCTT-C
T ss_pred hhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccccCCCCcCchhcCcEECCCccEEeCCC-c
Confidence 3455667777766532222333332 344568899999999987754321 00111111122245555656555 3
Q ss_pred CCCCCceEEEeecccch-hhhhHHHHHHHHHHHhcC
Q 010421 402 HPLIPNMAFVGYIESVS-NLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 402 ~~~~pnl~~iG~~~~~~-~~~~~e~qa~~~a~~l~g 436 (511)
.++.|++|++|...... ..+.|..|++.+|..+-+
T Consensus 178 ~T~~~gvyA~GDv~~~~~l~~~A~~~G~~aa~~~~~ 213 (221)
T d3grsa1 178 NTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFE 213 (221)
T ss_dssp BCSSTTEEECGGGGTSSCCHHHHHHHHHHHHHHHHS
T ss_pred cccCCcEEEEEEccCCcCcHHHHHHHHHHHHHHHcC
Confidence 47899999999876643 457899999999997755
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.98 E-value=2.4e-05 Score=75.04 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=29.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.+||||||+|++|+.+|.+| .|++|+|+|+.
T Consensus 7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47999999999999999999 99999999985
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=1.2e-05 Score=69.29 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
++++|+|||||++|++.|..+++.+.+ |+++.|..
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-----v~iie~~~ 38 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQ-----PVLITGME 38 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCC-----CEEECCSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-----eEEEEeec
Confidence 467899999999999999999998765 99998754
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=97.90 E-value=1.6e-06 Score=78.82 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=30.1
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..|+|||+|.+|+-.|..|++.+.+ |+++.|.+.
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~-----V~vlEk~~~ 38 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKS-----VTVFDNGKK 38 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 4699999999999999999998765 999999763
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=2.6e-06 Score=75.52 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=34.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCcccc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWK 42 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~ 42 (511)
.|||+||||||+|++||..+ .|.+|+|+|+ ..+||++.
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~ 42 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCV 42 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCccc
Confidence 58999999999999999999 8999999999 56788654
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=0.00011 Score=58.45 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=70.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||+|-+++..|..| ..-+|+++-|++.+ ...+.+.
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~------------------------------------~~~~~~~ 69 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF------------------------------------RAEKILI 69 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC------------------------------------CCCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc------------------------------------cchhHHH
Confidence 357999999999999999999 55679999886433 2234455
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCC-ceeEEEeCEEEEeec
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSN-SIQRYGFEFLVVCTG 153 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~d~vVlAtG 153 (511)
+.+.+..+.-++ .+..++++.++.-. + .+.-.|++++..++ +.+++.+|.|+++.|
T Consensus 70 ~~~~~~~~~~~i--~~~~~~~v~~i~G~--~-------------~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 70 KRLMDKVENGNI--ILHTNRTLEEVTGD--Q-------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp HHHHHHHHTSSE--EEECSCEEEEEEEC--S-------------SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred HHHHHhhcccce--eEecceEEEEEECC--C-------------CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 666666555555 67788999999872 1 12234777775433 345799999999987
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=4.1e-06 Score=78.64 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=36.1
Q ss_pred CCeEEEECCCHHHHHHHHhc----cCCCcEEEcCCCCcCccccC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL----RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l----~g~~v~v~e~~~~~GG~w~~ 43 (511)
.+||+||||||+||+||..| .|++|+|+|+++.+||.+..
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence 47899999999999999999 38999999999999997654
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.84 E-value=4.2e-06 Score=80.46 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=33.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCc
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSI 37 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~ 37 (511)
|...+||||||+|++|+.+|.+| .|++|+|+|+....
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~ 39 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 39 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence 78889999999999999999999 99999999996443
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.82 E-value=6.7e-05 Score=66.74 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=65.7
Q ss_pred hhhccCeEEEEeCceeEEeCCcE--EEcCCce--eeccEEEEecCCCCccccccc-----CCCcccccccCC-CCcccce
Q 010421 328 SEAEKGKIVFKRASKWWFWKGGL--EFEDNTK--LEADVVILCTGYDGKKKLKAF-----LPEPFQSLLEHP-SGLLPLY 397 (511)
Q Consensus 328 ~~l~~g~v~v~~~~i~~~~~~~v--~~~dG~~--~~~D~VI~aTG~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~ly 397 (511)
..+++.+|++..+.-.-...+.+ ...++.. +.+|.++.+||-+|...-... +......+.... .+.+.+.
T Consensus 109 ~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~~g~I~vd 188 (235)
T d1h6va1 109 VALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKINEKTGKIPVT 188 (235)
T ss_dssp HHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCCSSSCCBCCC
T ss_pred hhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEEEeeccceeeccccceeeeccccCccccC
Confidence 34555677877765433344443 3344543 789999999999886421100 000001111122 2445555
Q ss_pred eeecCCCCCceEEEeecccc--hhhhhHHHHHHHHHHHhcCCC
Q 010421 398 RGTIHPLIPNMAFVGYIESV--SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 398 ~~~~~~~~pnl~~iG~~~~~--~~~~~~e~qa~~~a~~l~g~~ 438 (511)
..+ .++.|+||++|.+... ...+.|..|++.+|+.+.|..
T Consensus 189 ~~~-~TsvpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~g~~ 230 (235)
T d1h6va1 189 DEE-QTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGS 230 (235)
T ss_dssp TTS-BCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred Ccc-ccCCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 543 4788999999987632 234689999999999886643
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.81 E-value=4.4e-05 Score=63.39 Aligned_cols=67 Identities=7% Similarity=0.025 Sum_probs=49.3
Q ss_pred CeEEEE--CCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 5 SKIAII--GAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 5 ~~v~II--GaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
..++|| |||+.|+.+|..| .|.+|+|+++.+.++... ..+..
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~----------------------------------~~~~~ 85 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH----------------------------------FTLEY 85 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH----------------------------------HTTCH
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc----------------------------------chhHH
Confidence 456665 9999999999999 999999999976653110 01123
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEE
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRF 107 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~ 107 (511)
..+.+..++.++ .++++++|.+++.
T Consensus 86 ~~~~~~l~~~GV--~i~~~~~v~~i~~ 110 (156)
T d1djqa2 86 PNMMRRLHELHV--EELGDHFCSRIEP 110 (156)
T ss_dssp HHHHHHHHHTTC--EEEETEEEEEEET
T ss_pred HHHHHHHhhccc--eEEeccEEEEecC
Confidence 344555556788 8999999999985
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=97.75 E-value=7.9e-06 Score=73.78 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=35.3
Q ss_pred hhhhhccCeEEEEeCc-eeEEe--CC---cEEEcCCceeeccEEEEecCCCCc
Q 010421 326 FFSEAEKGKIVFKRAS-KWWFW--KG---GLEFEDNTKLEADVVILCTGYDGK 372 (511)
Q Consensus 326 ~~~~l~~g~v~v~~~~-i~~~~--~~---~v~~~dG~~~~~D~VI~aTG~~~~ 372 (511)
+.+.+++.+|+++.+. |..+. ++ +|++++|+.+.+|.||.|||-..-
T Consensus 116 L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~ 168 (251)
T d2i0za1 116 LLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSV 168 (251)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSS
T ss_pred HHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccc
Confidence 4455666788888775 66664 33 277889999999999999998753
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=0.00014 Score=57.66 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=67.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHHH
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEILD 81 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (511)
.++|+|||+|-+++..|..| ..-+|+++-|++.+ ...+.
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~------------------------------------~~~~~--- 70 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM------------------------------------KADQV--- 70 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC------------------------------------CSCHH---
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc------------------------------------ccccc---
Confidence 47999999999999999999 45579999886543 11111
Q ss_pred HHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeec
Q 010421 82 YLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTG 153 (511)
Q Consensus 82 yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG 153 (511)
+.+...+.-++ .+.++++|.++.-.+ +..-.|.+.+..+++.+++.+|.|+++.|
T Consensus 71 ~~~~~~~~~~I--~v~~~~~v~~i~G~~---------------~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 71 LQDKLRSLKNV--DIILNAQTTEVKGDG---------------SKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp HHHHHHTCTTE--EEESSEEEEEEEESS---------------SSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred cccccccccce--eEEcCcceEEEEccc---------------cceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 22222222235 688899999998721 22234778887777888999999999988
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=97.72 E-value=2.6e-05 Score=69.02 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=62.4
Q ss_pred hhccCeEEEEeCceeEEeCCcEE--EcCC--ceeeccEEEEecCCCCcccccccCCCc----ccccccCCCCcccceeee
Q 010421 329 EAEKGKIVFKRASKWWFWKGGLE--FEDN--TKLEADVVILCTGYDGKKKLKAFLPEP----FQSLLEHPSGLLPLYRGT 400 (511)
Q Consensus 329 ~l~~g~v~v~~~~i~~~~~~~v~--~~dG--~~~~~D~VI~aTG~~~~~~~~~~~~~~----~~~~~~~~~~~~~ly~~~ 400 (511)
.+...+|++..+.........+. ..++ ..+.++.+|.|||.++...-......+ -.++..++.+.+.+...+
T Consensus 108 ~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~~ 187 (229)
T d3lada1 108 LIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYC 187 (229)
T ss_dssp HHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTTS
T ss_pred HhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCcccccccccccccccchHhcCeeecCCCcEEecccc
Confidence 34555677766653333333322 2222 247899999999988753211101111 011112344445554433
Q ss_pred cCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCCC
Q 010421 401 IHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 401 ~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.++.|+||++|.... +...+.+..+++.+|..+.|+.
T Consensus 188 -~T~vpgiyA~GDv~~g~~l~~~A~~~G~~aa~~i~g~~ 225 (229)
T d3lada1 188 -ATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 225 (229)
T ss_dssp -BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred -cCCCCCEEEEeCCcchHHHHHHHHHHHHHHHHHHcCCC
Confidence 578899999997644 3345678889999999887653
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=1.2e-05 Score=70.99 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=33.5
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhc----------------CCCCCCcEEEEEecCcee
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESN----------------QGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~----------------~~~~~~~Vtl~~R~~~~~ 238 (511)
...+++|+|||+|.+|+|+|..+++.. .....++|+++.|++..-
T Consensus 36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~ 96 (216)
T d1lqta1 36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQ 96 (216)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGG
T ss_pred cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHh
Confidence 357899999999999999999887310 011246799999997543
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.71 E-value=7.9e-06 Score=73.38 Aligned_cols=82 Identities=11% Similarity=0.002 Sum_probs=53.9
Q ss_pred eeeccEEEEecCCCCcccccc-----cCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHH
Q 010421 357 KLEADVVILCTGYDGKKKLKA-----FLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWL 430 (511)
Q Consensus 357 ~~~~D~VI~aTG~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~ 430 (511)
.+++|.|+++||.++...-.. .+..+-.++..+..+.+.+..++ .++.||+|++|..... ...+.+..|++.+
T Consensus 149 ~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~-~Ts~~~iyA~GDv~~~~~~~~~A~~eg~~a 227 (240)
T d1feca1 149 TLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYS-KTNVDNIYAIGDVTDRVMLTPVAINEGAAF 227 (240)
T ss_dssp EEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTC-BCSSTTEEECGGGGCSCCCHHHHHHHHHHH
T ss_pred EEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCccc-CcCCCCEEEEEECCCCccchhhHHHHHHHH
Confidence 478899999999887532110 01111112222455666676665 4789999999987643 3457899999999
Q ss_pred HHHhcCCCC
Q 010421 431 SRLIDDKFK 439 (511)
Q Consensus 431 a~~l~g~~~ 439 (511)
|+.+-+..+
T Consensus 228 a~~~~~~~~ 236 (240)
T d1feca1 228 VDTVFANKP 236 (240)
T ss_dssp HHHHHSSCC
T ss_pred HHHHhCCCC
Confidence 998876544
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.71 E-value=1.1e-05 Score=72.18 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=34.6
Q ss_pred CCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcCCCC
Q 010421 391 SGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDDKFK 439 (511)
Q Consensus 391 ~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~~ 439 (511)
.+.+.+...+ .++.|++|++|..... ...+.+..|++.+|+.+.|+.+
T Consensus 187 ~G~I~vde~~-~T~~~~iyAvGDv~~~~~l~~~A~~eg~~aa~~i~g~~~ 235 (238)
T d1aoga1 187 NGGVQVDEYS-RTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTTP 235 (238)
T ss_dssp TTEECCCTTC-BCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSSSC
T ss_pred CCeEEecCCe-eeccCCEEEEEEecCCccchhhHHHHHHHHHHHHcCCCC
Confidence 3445454433 3678999999987654 3457899999999998887543
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=3.1e-05 Score=64.77 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEeecc
Q 010421 80 LDYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCTGK 154 (511)
Q Consensus 80 ~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAtG~ 154 (511)
........++.++ .+..+++|..++. ++ +.+... +..+.+.||.||+|+|.
T Consensus 111 ~~~~~~~~~~~gv--~~~~~~~v~~i~~-----------------~g---v~~~~~--g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 111 GWIHRTTLLSRGV--KMIPGVSYQKIDD-----------------DG---LHVVIN--GETQVLAVDNVVICAGQ 161 (162)
T ss_dssp HHHHHHHHHHTTC--EEECSCEEEEEET-----------------TE---EEEEET--TEEEEECCSEEEECCCE
T ss_pred hHHHHHHHhhCCe--EEEeeeEEEEEcC-----------------CC---CEEecC--CeEEEEECCEEEECCCC
Confidence 3445556677787 7788899988874 33 223322 34457899999999994
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.62 E-value=0.00027 Score=62.85 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=27.4
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|+.|...|..+++.+.+ +|.++.+..
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~k----~V~vie~~~ 37 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHKK----RVAVIDLQK 37 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCC----CEEEEESCS
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC----EEEEEEEec
Confidence 599999999999999999988742 488887654
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.61 E-value=0.00019 Score=62.80 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.|+|||+|.+|++.|...++.+.+ +-++..+
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~k-----tllit~~ 34 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVR-----VGLLTQS 34 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC-----EEEEESC
T ss_pred cEEEECcCHHHHHHHHHHHHCCCc-----EEEEEec
Confidence 599999999999999999999875 7777654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.61 E-value=1.6e-05 Score=75.61 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHhc-------cCCCcEEEcCCCCc
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-------RHHNPVVFEASDSI 37 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-------~g~~v~v~e~~~~~ 37 (511)
.+||+||||||+|+++|..| .|++|+||||++.+
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 48999999999999999998 48999999998655
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=2.6e-05 Score=66.07 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.3
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|+|||+|++|++.|..|++.+.+ |+++.+.+.
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~-----Vtl~E~~~~ 77 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQ-----VTLFDAHSE 77 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCE-----EEEEESSSS
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccc-----eEEEeccCc
Confidence 5679999999999999999999998865 999999864
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.00077 Score=58.71 Aligned_cols=108 Identities=11% Similarity=-0.004 Sum_probs=58.7
Q ss_pred hhccCeEEEEeCceeEEeCCcEEEcCCceeeccEEEEecCCCCcccccccC---CCcccccccCCCCcccceeeecCCCC
Q 010421 329 EAEKGKIVFKRASKWWFWKGGLEFEDNTKLEADVVILCTGYDGKKKLKAFL---PEPFQSLLEHPSGLLPLYRGTIHPLI 405 (511)
Q Consensus 329 ~l~~g~v~v~~~~i~~~~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~---~~~~~~~~~~~~~~~~ly~~~~~~~~ 405 (511)
.+.+.+|++....-..... .....++..+.++.+|+|||..|..+-.+.. .....++...+.+.+.+.. ...+..
T Consensus 100 ~l~~~gV~v~~~~~~~~~~-~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~-~~~t~~ 177 (217)
T d1gesa1 100 VLGKNNVDVIKGFARFVDA-KTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDK-YQNTNI 177 (217)
T ss_dssp HHHHTTCEEEESCCEEEET-TEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBCCCT-TSBCSS
T ss_pred HHhCCeEEEEeeeccccee-eeecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEeeCc-hhccCC
Confidence 3455567766554322222 2344577789999999999988764422211 0000111112232222222 222445
Q ss_pred CceEEEeecccc-hhhhhHHHHHHHHHHHhcCCC
Q 010421 406 PNMAFVGYIESV-SNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 406 pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 438 (511)
|+++++|..... ...+.+..+++-++..+-+..
T Consensus 178 ~~i~~iG~g~~g~ela~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 178 EGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp TTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcEEEECCCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 799999965543 234567777887776665544
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=6.8e-05 Score=66.30 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=33.7
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCC----------------CCCCcEEEEEecCc
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQG----------------PEGQPCTMIVRTTH 236 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~----------------~~~~~Vtl~~R~~~ 236 (511)
...+|+|+|||+|.+|+|+|..+.+.... .+.++|+++.|++.
T Consensus 36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~ 94 (225)
T d1cjca1 36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94 (225)
T ss_dssp CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence 45799999999999999999999873100 12468999999874
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.42 E-value=0.0005 Score=56.40 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=27.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~~ 35 (511)
.++|+|||||-+|+-+|..+ .|.+ |+++.+++
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 35899999999999999988 7765 88998864
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=97.38 E-value=0.0003 Score=62.10 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=49.4
Q ss_pred eeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeecccc-hhhhhHHHHHHHHHHHhcC
Q 010421 358 LEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIESV-SNLHTAELRSIWLSRLIDD 436 (511)
Q Consensus 358 ~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~~a~~l~g 436 (511)
..+|-+++++|.+...... +..+-.++..++.+.+.+... ..++.|++|++|..... ...+.|..|++.+|..+.|
T Consensus 147 ~~~~~~~l~~~~~~~~~~~--~~~e~~g~~~d~~G~I~vd~~-~~TsvpgVyAaGDv~~~~~l~~~A~~eG~~Aa~~i~G 223 (229)
T d1ojta1 147 VAFKNCIIAAGSRAPNGKL--ISAEKAGVAVTDRGFIEVDKQ-MRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAG 223 (229)
T ss_dssp EEEEEEEECCCEEEECGGG--TTGGGTTCCCCTTSCCCCCTT-SBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred eecceEEEEecccCCcccc--cchhhhCccCCCCCCEEcCCC-ccCCCCCEEEEEecCCCcchHHHHHHHHHHHHHHHcC
Confidence 5666666666655432110 111111222355666767654 45789999999987654 3456799999999999988
Q ss_pred CCC
Q 010421 437 KFK 439 (511)
Q Consensus 437 ~~~ 439 (511)
+..
T Consensus 224 ~~~ 226 (229)
T d1ojta1 224 HKA 226 (229)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.34 E-value=0.0015 Score=51.64 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccCCCcCceeccCCCCccccCCCCCCCCCCCCCCChHHHH
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKSCSYNSTKLQSHRSDYEFTDFPWPNRDDPGFPSYTEIL 80 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (511)
+.++|+|||+|-+++..|..| ..-+|+++-|++.+- ..+.
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r------------------------------------a~~~-- 74 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR------------------------------------ASKI-- 74 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC------------------------------------SCHH--
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc------------------------------------cchh--
Confidence 358999999999999999999 445799999875541 1111
Q ss_pred HHHHHHHHhcCCCCceEeeeEEEEEEEcCCCCcccCCCCCCCCCCCceEEEEEeCCCCceeEEEeCEEEEee
Q 010421 81 DYLESYAKHFDVFKCVRFNSKVVEVRFTGSLETTDSGGNLLPAGHPVWEVAVQTHNSNSIQRYGFEFLVVCT 152 (511)
Q Consensus 81 ~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVlAt 152 (511)
+.++..+.-++ .+++++++.++.-..+. ...-.+.+++..+++.+++.+|.|++|.
T Consensus 75 -~~~~l~~~~nI--~v~~~~~v~~i~Gd~~~-------------~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 75 -MQQRALSNPKI--DVIWNSSVVEAYGDGER-------------DVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp -HHHHHHTCTTE--EEECSEEEEEEEESSSS-------------SSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred -hhhccccCCce--EEEeccEEEEEEccCCc-------------ccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 22333333334 68889999999873110 1122467777777777889999999873
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.23 E-value=0.00026 Score=66.47 Aligned_cols=125 Identities=22% Similarity=0.324 Sum_probs=84.6
Q ss_pred eeccEEEEecCCCCcccccccCCCcccc----------cccCCCCcccceeeecCCCCCceEEEeecccchhhhhHHHHH
Q 010421 358 LEADVVILCTGYDGKKKLKAFLPEPFQS----------LLEHPSGLLPLYRGTIHPLIPNMAFVGYIESVSNLHTAELRS 427 (511)
Q Consensus 358 ~~~D~VI~aTG~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa 427 (511)
..+|.||+|||.........+...++.+ +.........+|++++....|+|+|+|......+++.+|.||
T Consensus 162 ~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~~~~~e~Qa 241 (335)
T d2gv8a1 162 DIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQA 241 (335)
T ss_dssp EEESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCHHHHHHHHH
T ss_pred EEeeEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEEEEecCCchHHHH
Confidence 5699999999987543222211111111 111223355699999999999999999888877889999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCccee-eeccccHHHHHHhh
Q 010421 428 IWLSRLIDDKFKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCIS-TFSINHSDEICEEM 484 (511)
Q Consensus 428 ~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~d~l~~~~ 484 (511)
.|+|+.++|+..||+.++|.++..++....+.....+ +.+. .....|+++|...+
T Consensus 242 ~~~a~~~~g~~~Lps~~~m~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~L~~~~ 297 (335)
T d2gv8a1 242 AFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMY--HSLDYPKDATYINKLHDWC 297 (335)
T ss_dssp HHHHHHHTTSSCCCCHHHHHHHHHHHHHHHTTCGGGT--TBCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccCCCcchhhhhhHHHHHhhcccCccc--eecCCchHHHHHHHHHHHH
Confidence 9999999999999999999886655433222111111 2221 23466889888754
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.10 E-value=0.00031 Score=63.21 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+||+|||+|.+|+-+|..|++.+.+ |+++.|++.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~-----v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVD-----VDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCC-----EEEEeCCCC
Confidence 467999999999999999999998765 999999764
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.02 E-value=0.00075 Score=59.34 Aligned_cols=72 Identities=18% Similarity=0.091 Sum_probs=43.0
Q ss_pred EEEEecCCCCcccccccCCCcccccccCCCCcccceeeecCCCCCceEEEeeccc-chhhhhHHHHHHHHHHHhcCC
Q 010421 362 VVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFVGYIES-VSNLHTAELRSIWLSRLIDDK 437 (511)
Q Consensus 362 ~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~~a~~l~g~ 437 (511)
..+.++|.+|+... +..+-.++..+..+.+.+... +.++.|++|++|.... +...+.+..+++.+|..+.+.
T Consensus 156 ~~~~~~G~~p~~~~---l~l~~~gv~~~~~g~i~vd~~-~~T~~~~v~A~GD~~~g~~l~~~a~~~G~~aa~~i~~~ 228 (233)
T d1v59a1 156 EVTPFVGRRPYIAG---LGAEKIGLEVDKRGRLVIDDQ-FNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG 228 (233)
T ss_dssp EECCCSCEEECCTT---SCTTTTTCCBCTTSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccceecccccCCCC---cCchhcCeEEcCCCcEEECCe-EecCCCCEEEEcCCcccHHHHHHHHHHHHHHHHHHccC
Confidence 33447777766442 111111121234444555544 3478899999997654 334567899999999988654
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.01 E-value=0.00021 Score=67.97 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=29.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.||+||||+|++|+.+|.+| .+.+|+|+|+..
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 68999999999999999999 889999999964
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.0028 Score=53.23 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=27.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.|+|||||++|++.|..+++.+.+ |+++.++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~-----v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIR-----TGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCC-----EEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCe-----EEEEEEe
Confidence 599999999999999999988765 9999875
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=96.93 E-value=0.00014 Score=68.88 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=29.3
Q ss_pred CCeEEEECCCHHHHHHHHhc-cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~ 35 (511)
.+|+||||||+||+.+|.+| ...+|+|+|+..
T Consensus 26 ~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~ 58 (351)
T d1ju2a1 26 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGS 58 (351)
T ss_dssp EEEEEEECCSTTHHHHHHHHTTTSCEEEECSSB
T ss_pred CccEEEECccHHHHHHHHHhcCCCCEEEEecCC
Confidence 47999999999999999999 669999999964
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=96.84 E-value=0.00044 Score=63.72 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=77.0
Q ss_pred EEEcCCceeeccEEEEecCCCCcccccc-----cCCCcccccccCCCCcccceeeecCCCCCceEEE-eecccc---hhh
Q 010421 350 LEFEDNTKLEADVVILCTGYDGKKKLKA-----FLPEPFQSLLEHPSGLLPLYRGTIHPLIPNMAFV-GYIESV---SNL 420 (511)
Q Consensus 350 v~~~dG~~~~~D~VI~aTG~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ly~~~~~~~~pnl~~i-G~~~~~---~~~ 420 (511)
|.+.++.+..+|.||.|||+-.....-. ..+.+...+.+.+.+....|.++..+++||+|++ |...+. +.+
T Consensus 124 V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~ 203 (298)
T d1w4xa1 124 VDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNML 203 (298)
T ss_dssp EEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHH
T ss_pred eccccccccccceEEEeecccccccCCcccccccccCCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHH
Confidence 7788999999999999999865432211 1222233333445567789999999999999998 444322 234
Q ss_pred hhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhccccCCcceeeeccccHH
Q 010421 421 HTAELRSIWLSRLIDDK--FKLPSAEKMLEQTSKEMEVMKQSTRFYKRHCISTFSINHSD 478 (511)
Q Consensus 421 ~~~e~qa~~~a~~l~g~--~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d 478 (511)
..+|.|++|++++|+.. ....+.+...+..++|.+..++.. .+..+..|.+||++
T Consensus 204 ~~~e~q~~~i~~~i~~~~~~~~~~ve~~~~a~~~~~~~~~~~~---~~tv~~~~~swy~~ 260 (298)
T d1w4xa1 204 VSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEIA---DETLYPMTASWYTG 260 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHHHHHHHHHH---TTSSGGGCGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEechHHHHHHHHHHHHHH---hccCcccCCcCccC
Confidence 67999999999987421 111122222233344444443322 12223346788875
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.83 E-value=0.00032 Score=60.04 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=32.6
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.+|||+|||+|++|+++|..|++.+.+ .|+++.|++.
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~----~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYS----DITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCC----CEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCC----eEEEEEecCc
Confidence 468999999999999999999999752 4999999874
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=96.83 E-value=0.0022 Score=56.29 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=26.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.|+|||+|+.|..+|..+++.+.+ .|.++.+.
T Consensus 5 DviIIG~GpaGl~aA~~aa~~g~k----~V~iie~~ 36 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAATLYKK----RVAVIDVQ 36 (238)
T ss_dssp SEEEECCSHHHHHHHHHHHHTSCC----CEEEEESC
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC----EEEEEEee
Confidence 599999999999999999987643 47777664
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00061 Score=50.65 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=30.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.++|+|||.|-+|+++|+.| .|.+|+++|.+..
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 57899999999999999999 9999999998643
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.75 E-value=0.00015 Score=64.56 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=25.5
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
+|+|||||++||++|.+| .|.+|+++|+.
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~ 32 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDV 32 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence 699999999999999999 78887777663
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=96.73 E-value=0.00043 Score=66.39 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=28.7
Q ss_pred CCeEEEECCCHHHHHHHHhc---cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL---RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l---~g~~v~v~e~~~ 35 (511)
.+|+||||||.+|+.+|.+| .+++|+|+|+..
T Consensus 17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~ 51 (385)
T d1cf3a1 17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 51 (385)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 48999999999999999999 348999999964
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=96.71 E-value=0.00067 Score=61.43 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=56.3
Q ss_pred hhhhhccCeEEEEeCc-eeEEeCCc----EEEcCCceeeccEEEEecCCCCcccccccCCCcccccccCCCCcccceeee
Q 010421 326 FFSEAEKGKIVFKRAS-KWWFWKGG----LEFEDNTKLEADVVILCTGYDGKKKLKAFLPEPFQSLLEHPSGLLPLYRGT 400 (511)
Q Consensus 326 ~~~~l~~g~v~v~~~~-i~~~~~~~----v~~~dG~~~~~D~VI~aTG~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~ 400 (511)
+.+.+++.+++++.+. |.++..++ |.+++| ++.+|.||+|||.-... +.+.++.. .+.. . .+..
T Consensus 157 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~-l~~~~G~~------~~~~-~-p~~~- 225 (276)
T d1ryia1 157 YVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGM-FFKQLGLN------NADG-K-PYIG- 225 (276)
T ss_dssp HHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHH-HHHHTTCC------CCSS-C-CEEE-
T ss_pred HHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHH-HHhhcCCC------cccc-c-ceec-
Confidence 3455566678888764 77887553 566666 68999999999976542 22222211 1111 1 1222
Q ss_pred cCCCCCceEEE-eecccchhhhhHHHHHHHHHHHhcCCC
Q 010421 401 IHPLIPNMAFV-GYIESVSNLHTAELRSIWLSRLIDDKF 438 (511)
Q Consensus 401 ~~~~~pnl~~i-G~~~~~~~~~~~e~qa~~~a~~l~g~~ 438 (511)
.+|..+++++. |.... .+.++..-++.++.++.++.
T Consensus 226 ~~p~~~~~~~~~g~~~~--gi~~~p~~g~~i~~~~~~~~ 262 (276)
T d1ryia1 226 RHPEDSRILFAAGHFRN--GILLAPATGALISDLIMNKE 262 (276)
T ss_dssp EETTEEEEEEEECCSSC--TTTTHHHHHHHHHHHHTTCC
T ss_pred cccCCCCEEECCCCCCC--eEEECccHHHHHHHHHhcCC
Confidence 23555666654 43322 23445556777887776543
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=96.67 E-value=0.0005 Score=66.05 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.5
Q ss_pred CCeEEEECCCHHHHHHHHhc--cC-CCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RH-HNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g-~~v~v~e~~~~ 36 (511)
.+|+||||||++|+.+|.+| .+ .+|+|+|+...
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 58999999999999999999 45 79999999753
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.58 E-value=0.0021 Score=57.63 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=28.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.|+|||+|++|...|..+++.+.+ |.++.+.
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~-----V~liE~~ 33 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAK-----VALVEKS 33 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC-----EEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHHCCCe-----EEEEecC
Confidence 489999999999999999999865 9999875
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.51 E-value=0.0011 Score=51.14 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=30.6
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.++|+|+|||+|.+|..-|..|.+.+.. |+++...
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~ga~-----v~v~~~~ 44 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAGAR-----LTVNALT 44 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBE-----EEEEESS
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCe-----EEEEecc
Confidence 6799999999999999999999998765 8887554
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=96.47 E-value=0.0026 Score=58.30 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=28.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||+|.+|+=+|..|++.+.+ +|+++.|++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~----~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWN----NITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCC----CEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCC----cEEEEeCCC
Confidence 699999999999999999988742 499999874
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.30 E-value=0.00066 Score=59.98 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=31.1
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCC--CCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQG--PEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~--~~~~~Vtl~~R~~~ 236 (511)
..||+|||+|++|+-+|..|++.+.. .-..+||++.+.+.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 35899999999999999999998631 00124999999764
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.15 E-value=0.0016 Score=54.65 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||||..|..+|..| .|++|+|+||+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 57899999999999999999 899999999974
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.07 E-value=0.00072 Score=59.52 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=29.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
||+|||+|++|+.+|..|++.+.. .+|+++.+.+.
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~---~~V~v~e~~~~ 37 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSR---AHVDIYEKQLV 37 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSS---CEEEEECSSSS
T ss_pred eEEEECccHHHHHHHHHHHhcCCC---CeEEEEeCCCC
Confidence 799999999999999999887432 35999988764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.05 E-value=0.0021 Score=54.15 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=29.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
+++|+|||+|..|++.|..| .|++|++++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 36899999999999999999 99999999995
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=95.77 E-value=0.016 Score=52.85 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=29.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+-+|..|++.+.+ |.++.+.+.
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~-----V~lvEK~~~ 50 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAK-----VILIEKEPV 50 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 699999999999999999998865 999998753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.66 E-value=0.0022 Score=58.58 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=30.6
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|||+|||+|.+|+-.|..|++.+.+ |+++.+++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~-----V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLN-----VTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCE-----EEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCC-----EEEEeCCC
Confidence 58999999999999999999988754 99999865
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0044 Score=45.70 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=32.4
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+++|+|+|+|.|.||.-+|..|++.+.. |+++..+.
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~-----v~~~D~~~ 38 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFLARGVT-----PRVMDTRM 38 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCC-----CEEEESSS
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCCE-----EEEeeCCc
Confidence 7899999999999999999999999875 99988765
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.027 Score=51.49 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=28.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+-.|.++++.+.. .+|.++.+.+
T Consensus 7 DVlVIG~G~AGl~AA~~a~~~~~g---~~V~lleK~~ 40 (311)
T d1kf6a2 7 DLAIVGAGGAGLRAAIAAAQANPN---AKIALISKVY 40 (311)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTT---CCEEEEESSC
T ss_pred CEEEECccHHHHHHHHHHHHhCCC---CEEEEEECCC
Confidence 599999999999999999987532 3599998764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.13 E-value=0.0052 Score=56.68 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=31.2
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+.|+|+|||||.||+=+|..|++.+. +|+++.+++.
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~-----~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGH-----QVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTC-----EEEEEESSSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCC-----CEEEEECCCC
Confidence 35899999999999999999998765 4999999853
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.08 E-value=0.0083 Score=49.71 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=29.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
.-+|+|||||.+|+.||..+ .|..|+++|.+..
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 35899999999999999999 9999999998643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.04 E-value=0.0092 Score=48.69 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=29.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.-+|+|||+|.+|+.|+..+ .|..|+++|.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 46899999999999999999 999999999863
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=94.96 E-value=0.072 Score=48.63 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=29.4
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+-+|..|++.+.+ |.++.+.+.
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~-----V~llEk~~~ 57 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAK-----VILLEKEPI 57 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCC-----EEEECSSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 599999999999999999998765 999998753
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.01 Score=50.21 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=30.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+.++|+|||||.-|...|..+ .|++|+++|+++
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 468999999999999999888 999999999964
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.86 E-value=0.0099 Score=46.90 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=28.2
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|+|+|.-|...|+.| .|++|+++|+++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 799999999999999999 899999999964
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.86 E-value=0.0061 Score=56.24 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=32.0
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
...|+|+|||+|.+|+-+|..|++.+.+ |+++.+++
T Consensus 28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~-----V~vlE~~~ 63 (370)
T d2iida1 28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQ-----VTVLEASE 63 (370)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCE-----EEEECSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCC-----EEEEeCCC
Confidence 4668999999999999999999999764 99999865
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=0.011 Score=48.51 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=28.7
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
+|+|||+|.-|...|..| .|++|++++|...
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 799999999999999999 8999999999754
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.70 E-value=0.0079 Score=53.20 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=30.8
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.-|+|+|||+|.+|+=+|..|++.+.+ |+++.|..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~-----V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYS-----VHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCE-----EEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCC-----EEEEeCCC
Confidence 346899999999999999999998765 99999863
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.60 E-value=0.013 Score=46.15 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=28.8
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|+++|||+|..|..+|..| .|++|+++|++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 5799999999999999999 899999999964
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.60 E-value=0.013 Score=47.02 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cC--CCcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RH--HNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~ 35 (511)
|++.++|+|||+|.-|.++|..| .+ -+++++|.+.
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 77888999999999999999999 55 3799999853
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.53 E-value=0.0094 Score=52.19 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=32.9
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+|+|+|||+|.+|+..|..|++.+.. |+++.+++.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~-----v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYT-----VHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccc-----eeeEeeccc
Confidence 5789999999999999999999998765 999988763
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.31 E-value=0.017 Score=48.12 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=30.2
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|+|||+|..|.-+|..|++.+.. |+++.|++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~-----V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQS-----VLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCE-----EEEEECCH
Confidence 37899999999999999999998765 99998865
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=94.29 E-value=0.018 Score=46.65 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 1 MANYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
|.+.++|+|||+|.-|.++|..| .++ +++++|.++
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence 56778999999999999998877 554 799999764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.0095 Score=48.21 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=31.5
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEec
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRT 234 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~ 234 (511)
.+||+|+|||||..|.+-|..|.+.+.+ ||++...
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~GA~-----VtVvap~ 45 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTGCK-----LTLVSPD 45 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCE-----EEEEEEE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCE-----EEEEeCC
Confidence 6899999999999999999999999875 9999654
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.08 E-value=0.012 Score=49.61 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=28.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
...+|+|||||.-|.+.|..| .|++|+++.+++
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 346899999999999999999 778999999864
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.07 E-value=0.021 Score=47.26 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=30.7
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|+|||+|..|.-+|..|++.+.+ |+++.|+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~-----V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIK-----VTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCE-----EEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE-----EEEEECCh
Confidence 68999999999999999999988754 99999975
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.95 E-value=0.018 Score=48.35 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=29.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+.++|+|||||.-|...|..+ .|++|+++|+++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 457899999999999988777 999999999964
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=93.84 E-value=0.024 Score=43.23 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=28.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|..|..-|+.| .|.+|++++...
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 57999999999999999999 899999998753
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.72 E-value=0.016 Score=51.28 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=28.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||+|.+|+-+|..|++.+-+ +|+++.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~----~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGIT----DLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCC----CEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCC----cEEEEECCC
Confidence 699999999999999999998731 399999875
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.54 E-value=0.02 Score=46.20 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=28.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
.++|+|||||..|+.-|..| .|.+|+|+.+.
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999999999999999 89999999763
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.017 Score=53.30 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 196 KDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 196 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+.+||+|||+|.+|+=.|..|++.+.+ |+++.+++
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~-----V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMD-----VTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCE-----EEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCC-----EEEEeCCC
Confidence 456899999999999999999998764 99998764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.39 E-value=0.017 Score=52.07 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=28.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|||+|.+|+-+|..|++.+.+ |+++.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~-----V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTD-----AVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCC-----EEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCC-----EEEEecCC
Confidence 699999999999999999998765 99999864
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.27 E-value=0.047 Score=41.02 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=25.7
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+|||+|.+|+-.|..| ...++++..+++
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 47899999999999999999 444666666643
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.26 E-value=0.025 Score=48.10 Aligned_cols=31 Identities=29% Similarity=0.481 Sum_probs=28.4
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
+|+|||.|.-|+.+|..| .|++|+++|.+..
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~ 34 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST 34 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence 699999999999999999 8999999998653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.06 E-value=0.025 Score=49.29 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=29.2
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|.-+|..|++.+.+ |+++.+++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~-----V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKK-----VLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC-----EEEEcCCC
Confidence 599999999999999999998764 99999975
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.85 E-value=0.024 Score=51.57 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=28.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||||.||+=+|..|++.+.+ |+++.+++
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~-----V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKK-----VLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCC-----EEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCc-----EEEEECCC
Confidence 599999999999999999987654 99999875
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.73 E-value=0.32 Score=41.63 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=27.7
Q ss_pred CCeEEEECCCHHHHHHHHhc-c---------------------CC-CcEEEcCCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL-R---------------------HH-NPVVFEASDS 36 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l-~---------------------g~-~v~v~e~~~~ 36 (511)
.++|+|||+|-.++=+|..| . +. +|+|+.|+..
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~ 94 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence 47999999999999999988 4 44 6999998753
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.90 E-value=0.056 Score=45.52 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=28.0
Q ss_pred eEEEECCCHHHHHHHHhc-cCCCcEEEcCCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL-RHHNPVVFEASDS 36 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l-~g~~v~v~e~~~~ 36 (511)
+|+|||.|..|+.+|..+ .|++|+.+|-++.
T Consensus 2 kI~ViGlG~vGl~~a~~~a~g~~V~g~Din~~ 33 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDILPS 33 (196)
T ss_dssp EEEEECCSHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred EEEEECCChhHHHHHHHHHCCCcEEEEECCHH
Confidence 699999999999999877 9999999998654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.87 E-value=0.06 Score=43.88 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=27.8
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|.|||+|.-|.+.|+.| .|++|+++|++.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 699999999999999999 999999999863
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.57 E-value=0.049 Score=48.90 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=30.2
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||+|.+|.=+|..|++.+.+ |+++.|++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~-----v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGID-----NVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCC-----EEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC-----EEEEeCCCC
Confidence 799999999999999999999875 999999863
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=91.56 E-value=0.087 Score=42.21 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=29.3
Q ss_pred CCeEEEEC-CCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIG-AGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIG-aG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.++|+||| .|.-|-..|+.| .|++|.++|+..
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 46899999 799999999999 899999999864
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.40 E-value=0.062 Score=44.60 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=26.7
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
+|+|||||.-|.+.|..| .|.+|+++.|.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 799999999999999999 88999999763
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.28 E-value=0.091 Score=50.52 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=38.3
Q ss_pred CCCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCCcCccccC
Q 010421 2 ANYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDSIGGIWKS 43 (511)
Q Consensus 2 ~~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~~GG~w~~ 43 (511)
+..+||+|+|.|..=...|..| .|.+|+=+|+++.-||.|..
T Consensus 4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS 47 (491)
T d1vg0a1 4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS 47 (491)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence 3568999999999998888888 99999999999999999986
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.98 E-value=0.058 Score=47.82 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=29.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
+|+|||+|.+|.=+|..|++.+-. +|+++.|++.
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~----~V~V~Er~~~ 36 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIG----KVTLLESSSE 36 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCS----EEEEEESSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCC----eEEEEeCCCC
Confidence 699999999999999999998742 4999999875
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.077 Score=48.71 Aligned_cols=32 Identities=25% Similarity=0.200 Sum_probs=28.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+-.|..|++.+.+ |+++.+++
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~-----V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLN-----VVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCC-----EEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCC-----EEEEecCC
Confidence 489999999999999999998765 99999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.99 E-value=0.062 Score=45.13 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=30.2
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
-|+|+|||+|..|..+|..++..|.. |+++.+++
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~-----V~l~D~~~ 37 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHT-----VVLVDQTE 37 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE-----EEEECSCH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCc-----EEEEECCh
Confidence 47999999999999999999998765 99998875
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=89.78 E-value=0.85 Score=40.63 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=25.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+=.|..+++.+ +|.++.+.+
T Consensus 9 DVvVVG~G~AGl~AA~~a~~~g------~V~llEK~~ 39 (305)
T d1chua2 9 DVLIIGSGAAGLSLALRLADQH------QVIVLSKGP 39 (305)
T ss_dssp SEEEECCSHHHHHHHHHHTTTS------CEEEECSSC
T ss_pred CEEEECccHHHHHHHHHhhcCC------CEEEEECCC
Confidence 6999999999998887766543 499998865
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.75 E-value=0.15 Score=40.54 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=27.3
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~ 35 (511)
..+|.|||||.-|.++|..| .++ +++++|..+
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 46899999999999999999 554 699999853
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=89.55 E-value=0.086 Score=42.76 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=29.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
||+|||+|..|.-+|..|++.+.. |+++.|++.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~-----V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHE-----VQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE-----EEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCc-----eEEEEcCHH
Confidence 799999999999999999998765 999999764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=89.49 E-value=0.092 Score=46.67 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=28.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+=+|..|++.+.+ |+++.|.+
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~-----V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVK-----TLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCc-----EEEEeCCC
Confidence 599999999999999999998765 99999864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.46 E-value=0.15 Score=41.51 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=27.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+|+|+|+|+.|+.++..+ .|.+|+++++++
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 46899999999999988877 899999999863
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.31 E-value=0.1 Score=40.34 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=27.3
Q ss_pred CCCeEEEECCCHHHHHHHHhc---cCCC-cEEEcCCCCc
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL---RHHN-PVVFEASDSI 37 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l---~g~~-v~v~e~~~~~ 37 (511)
++.+|+|+|||-+|.+.+.++ .+++ +..+|.++..
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK 40 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence 457899999999999999888 5666 4577766544
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=89.16 E-value=0.17 Score=40.77 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=27.9
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~ 35 (511)
..+|+|||+|.-|.++|..| .++ +++++|.+.
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 46999999999999999999 665 699999863
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=89.15 E-value=0.1 Score=46.44 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=30.9
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHh-cCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAES-NQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~-~~~~~~~~Vtl~~R~~~ 236 (511)
+....|+|||+|.+|+-+|..|++. +. +|+++.+++.
T Consensus 31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~-----~V~vlE~~~~ 68 (278)
T d1rp0a1 31 YAETDVVVVGAGSAGLSAAYEISKNPNV-----QVAIIEQSVS 68 (278)
T ss_dssp HTEEEEEEECCSHHHHHHHHHHHTSTTS-----CEEEEESSSS
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHccCC-----eEEEEecCCC
Confidence 3456799999999999999999874 55 4999999864
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=88.98 E-value=0.16 Score=40.18 Aligned_cols=31 Identities=39% Similarity=0.571 Sum_probs=26.2
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~ 35 (511)
.+|+|||+|.-|.++|..| .++ +++++|...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 4899999999999999999 554 699999764
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=88.88 E-value=0.21 Score=40.57 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=31.7
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.++|+|+|+|+|-+|--++..|...+.. +|+++.|++
T Consensus 15 ~~~~~vlIlGaGGaarai~~aL~~~g~~----~I~I~nR~~ 51 (167)
T d1npya1 15 NKNAKVIVHGSGGMAKAVVAAFKNSGFE----KLKIYARNV 51 (167)
T ss_dssp CTTSCEEEECSSTTHHHHHHHHHHTTCC----CEEEECSCH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCC----EEEEecccH
Confidence 3678999999999999999999988753 599988865
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.88 E-value=0.079 Score=44.20 Aligned_cols=35 Identities=23% Similarity=0.122 Sum_probs=30.5
Q ss_pred CCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 197 DKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 197 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
-++|+|||+|..|..+|..++..|.. |+++.+++.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~-----V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTP-----ILMKDINEH 38 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCC-----EEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCe-----EEEEECCHH
Confidence 37899999999999999999998765 999988653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.73 E-value=0.2 Score=40.89 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=27.4
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
...|+|+|+|+.|+.++..+ .|. +|+++|+++
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence 45799999999999999888 787 689999863
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.61 E-value=0.24 Score=37.13 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=30.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
..++|.|||||.=|...|..+ .|+++.++|+++.
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 346899999999999999998 8999999998654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=88.60 E-value=0.18 Score=39.97 Aligned_cols=30 Identities=37% Similarity=0.485 Sum_probs=26.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC--CcEEEcCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH--NPVVFEAS 34 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~ 34 (511)
++|+|||+|.-|.++|..| .+. +++++|.+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 35 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence 6899999999999999998 553 69999975
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=88.58 E-value=0.16 Score=41.04 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=32.2
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
...+++|+|||+|..|..++..|...+. ++++++.|+.
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~----~~i~v~nRt~ 58 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGV----RAVLVANRTY 58 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCC----SEEEEECSSH
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCC----cEEEEEcCcH
Confidence 3678999999999999999999998865 3588888864
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=88.50 E-value=0.18 Score=41.08 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=28.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
+.++|+|||||=++-+++..| .|.+|+|+.|+
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt 50 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 50 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence 357999999999999999999 78889999885
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=88.44 E-value=0.21 Score=40.59 Aligned_cols=32 Identities=28% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
..+|+|+|+|+.|+.++..+ .|.+|+++|+++
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 45799999999999998887 889999999863
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=88.32 E-value=0.21 Score=39.41 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=26.5
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
++|.|||+|.-|.++|..| .++ +++++|...
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~ 35 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence 5899999999999999988 444 799999754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.31 E-value=0.22 Score=40.32 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=28.2
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
...+|+|+|+|+.|+.++.-+ .|.+|+++++++
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 346799999999999988877 889999999863
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=88.25 E-value=0.28 Score=37.04 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=29.5
Q ss_pred CCCeEEEECCC-----------HHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 3 NYSKIAIIGAG-----------VSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG-----------~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
..++|+|||+| +++..|++.| .|++++++..++.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 46799999999 5788899999 8999999998754
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=88.09 E-value=0.21 Score=39.45 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=26.6
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~ 35 (511)
.+|+|||+|.-|.++|..| .++ +++++|.++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 5799999999999999999 555 699999753
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.88 E-value=0.18 Score=41.71 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=27.3
Q ss_pred eEEEE-CCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAII-GAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~II-GaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|+|| |+|.-|.+.|..| .|++|++..|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999 7799999999999 999999999864
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=87.79 E-value=0.16 Score=47.10 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=29.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCce
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHW 237 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~ 237 (511)
.|+|||+|..|.-+|..|++.+.+ |.++.|...|
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~-----VlvLEaG~~~ 37 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQ-----TLMLEMGQLW 37 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-----EEEEESSCCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCe-----EEEEecCCCC
Confidence 499999999999999999998754 9999997554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.68 E-value=0.21 Score=41.96 Aligned_cols=34 Identities=38% Similarity=0.485 Sum_probs=29.4
Q ss_pred CCCCCeEEEECC-CHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 1 MANYSKIAIIGA-GVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 1 m~~~~~v~IIGa-G~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
|. .++|+|+|| |..|-.++.+| .|++|+++.|+.
T Consensus 1 m~-~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 1 MA-VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CC-CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CC-CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 64 467999995 99999999999 999999999863
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=87.63 E-value=0.15 Score=47.24 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=30.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCcee
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTHWT 238 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~~~ 238 (511)
.|+|||+|.+|+-+|..|++.+.+ |.++.|...|-
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~-----VlvLEaG~~~~ 43 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIP-----TQIVEMGRSWD 43 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCC-----EEEECSSCCSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCe-----EEEEeCCCCCC
Confidence 599999999999999999997654 99999875553
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=87.62 E-value=0.18 Score=40.67 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=28.0
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|.|||.|.-|...|++| .|++|+++|++.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999 999999999863
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.55 E-value=0.19 Score=40.59 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=28.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
++|.|||-|.-|...|++| .|++|.++|++
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~ 33 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV 33 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence 4799999999999999999 89999999986
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=87.30 E-value=0.17 Score=41.36 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=31.8
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..++|+|+|+|+|-+|--++..|.+.+. +|+++.|+.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~-----~i~I~nRt~ 51 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDC-----AVTITNRTV 51 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-----EEEEECSSH
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccce-----EEEeccchH
Confidence 4678999999999999999999998764 399988875
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=87.30 E-value=0.24 Score=40.85 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=33.0
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..++|+|+|+|+|-+|--++..|...+. ++++++.|++.
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~g~----~~i~i~nR~~~ 53 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIEGL----KEIKLFNRRDE 53 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEEECSST
T ss_pred CcCCCEEEEECCcHHHHHHHHHHhhcCC----ceEeeeccchH
Confidence 4688999999999999989999988765 47999999753
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=87.08 E-value=0.24 Score=34.39 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=28.6
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
++|.|||+|.=|-..+... .|+++.+++..+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 6899999999999888888 9999999998654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=87.08 E-value=0.26 Score=38.78 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=25.7
Q ss_pred eEEEECCCHHHHHHHHhc--cC--CCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH--HNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~~ 35 (511)
+|+|||||.-|.++|..| .+ -+++++|.++
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 799999999999999988 44 3799999864
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=86.79 E-value=0.27 Score=39.92 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~ 34 (511)
+.++|+|||+|=++-+++..| .|. +++|+.|+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence 457899999999999999999 776 68999885
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=86.65 E-value=0.26 Score=40.35 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=28.4
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
++|.|||.|.-|...|++| .|++|.++|++.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3699999999999999999 999999999853
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=86.60 E-value=0.28 Score=40.16 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=28.9
Q ss_pred CeEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.+|.|||-|.-|...|++| .|++|.+++++.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 5799999999999999999 999999999965
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.45 E-value=0.18 Score=39.10 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=29.4
Q ss_pred CcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 198 KKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 198 k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
|+++|+|.|..|..+|..|.+.+.. |+++..++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~-----vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHE-----VLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC-----CEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe-----EEEecCcH
Confidence 6899999999999999999998765 99988765
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.07 E-value=0.27 Score=38.76 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=25.6
Q ss_pred eEEEECCCHHHHHHHHhc--cCC--CcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHH--NPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~ 35 (511)
+|.|||+|--|.++|..| .+. +++++|.++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence 799999999999999988 443 599999753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=85.64 E-value=0.25 Score=40.66 Aligned_cols=32 Identities=31% Similarity=0.290 Sum_probs=27.1
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
..+|+|+|||+.|+.++..+ .|. +|+++|+++
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCEEEEECCCccchhheeccccccccccccccccc
Confidence 35799999999999988888 786 689999864
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=85.55 E-value=0.37 Score=38.27 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=26.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
+.+|.|||+|.-|.++|..| .++ +++++|.+.
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 46899999999999999877 443 699999854
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.43 E-value=0.37 Score=38.64 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~ 35 (511)
..+|.|||+|--|.++|..| .++ +++++|.+.
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 35799999999999999999 554 699999853
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.13 E-value=0.33 Score=39.27 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=27.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..+|+|+|+|+.|+.++.-+ .|.++++++++
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~ 63 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS 63 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence 46799999999999988877 89998888885
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.04 E-value=0.078 Score=45.84 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=22.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQG 222 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~ 222 (511)
||+|||+|.+|+-+|..|++.+.+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~ 25 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHS 25 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTT
T ss_pred EEEEECchHHHHHHHHHHHHCCCC
Confidence 699999999999999999998754
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.92 E-value=0.21 Score=45.13 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=31.1
Q ss_pred cCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 195 LKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 195 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
..+++|+|||+|++|+..|..|++... +.+|+++.+.+.
T Consensus 48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~---~~~~~~~~~~~~ 86 (311)
T d2gjca1 48 FAVSDVIIVGAGSSGLSAAYVIAKNRP---DLKVCIIESSVA 86 (311)
T ss_dssp TTEESEEEECCSHHHHHHHHHHHHHCT---TSCEEEECSSSS
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHhCC---CCeEEEEEcCCC
Confidence 456789999999999999999997621 135999998753
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=84.60 E-value=0.44 Score=38.23 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.8
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~ 34 (511)
..++|+|||+|-.|-.++..| .|. +++|+-|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 357899999999999999999 787 58898885
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=84.55 E-value=0.27 Score=44.52 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=29.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+-.|.++++.+.+ |.++.+.+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~-----V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGAN-----VILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCC-----EEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCc-----EEEEeCCC
Confidence 599999999999999999999865 99998875
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=84.42 E-value=0.5 Score=36.03 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=28.9
Q ss_pred CCCeEEEECCCH-----------HHHHHHHhc--cCCCcEEEcCCCC
Q 010421 3 NYSKIAIIGAGV-----------SGLAAVKQL--RHHNPVVFEASDS 36 (511)
Q Consensus 3 ~~~~v~IIGaG~-----------aGl~aa~~l--~g~~v~v~e~~~~ 36 (511)
..++|+|||+|| ++..|++.| .|++++++..++.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~ 52 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA 52 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence 347899999995 788888888 9999999998754
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=84.05 E-value=0.39 Score=42.42 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=29.6
Q ss_pred CCCeEEEECC-CHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGA-GVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGa-G~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.+++|+|+|| |.-|-.++..| .|++|+++.|+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3578999997 99999999999 999999999863
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=84.01 E-value=0.4 Score=39.10 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
..+|+|+|+|+.|+.++..+ .|. +|+++|+++
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence 45799999999999998888 776 688898853
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.92 E-value=0.38 Score=37.95 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=25.6
Q ss_pred eEEEECC-CHHHHHHHHhc--cCC--CcEEEcCCC
Q 010421 6 KIAIIGA-GVSGLAAVKQL--RHH--NPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGa-G~aGl~aa~~l--~g~--~v~v~e~~~ 35 (511)
+|+|||| |.-|.++|..| .++ +++++|...
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence 6999996 99999999998 553 799999853
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.72 E-value=0.41 Score=37.96 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=27.1
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
+|.|||.|-.|...|+.| .|++++++++..
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~ 33 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR 33 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence 699999999999999999 889999888753
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=83.58 E-value=0.41 Score=39.67 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=32.9
Q ss_pred hccCCCcEEEEC-CCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 193 QLLKDKKVAVVG-FKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 193 ~~~~~k~V~VvG-~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
...++|+|+|.| +|-.|..+|..|++.+.+ |+++.|+.
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~-----V~~~~r~~ 57 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE-----VVLCGRKL 57 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-----EEEEESSH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccc-----hhhcccch
Confidence 457899999999 577899999999999875 99999975
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=83.56 E-value=0.46 Score=37.21 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=24.9
Q ss_pred eEEEECCCHHHHHHHHhc--cC--CCcEEEcCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RH--HNPVVFEAS 34 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g--~~v~v~e~~ 34 (511)
+|+|||+|--|.++|..| .+ -+++++|.+
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~ 34 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 799999999999999988 44 369999975
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=83.07 E-value=0.29 Score=44.51 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=28.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
.|+|||+|.+|+-.|..+++.+.+ |.++.+.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~-----V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLS-----TIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCC-----EEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC-----EEEEecCC
Confidence 499999999999999999998765 99998865
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.86 E-value=0.56 Score=38.98 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~ 34 (511)
...+|+|+|+|+.|+.++..+ .+. +|+++|.+
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~ 59 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence 346899999999999888887 565 68888875
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.73 E-value=0.43 Score=37.58 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.6
Q ss_pred eEEEECC-CHHHHHHHHhc--cCC--CcEEEcCC
Q 010421 6 KIAIIGA-GVSGLAAVKQL--RHH--NPVVFEAS 34 (511)
Q Consensus 6 ~v~IIGa-G~aGl~aa~~l--~g~--~v~v~e~~ 34 (511)
+|+|||| |.-|.++|..| .++ +++++|.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence 7999996 99999999998 554 58999874
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=82.70 E-value=0.49 Score=42.02 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=29.1
Q ss_pred CCCeEEEECC-CHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 3 NYSKIAIIGA-GVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 3 ~~~~v~IIGa-G~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
++.+|+|+|| |.-|...+.+| .|++|+++.|+.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 4568999997 99999999999 999999998853
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=82.69 E-value=0.5 Score=38.49 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.0
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCC-cEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHN-PVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~-v~v~e~~ 34 (511)
..+|+|+|+|+-|+.++..+ .|.. |++.|.+
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~ 62 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN 62 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence 35799999999999999998 8875 6677775
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=82.43 E-value=0.54 Score=37.94 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=26.1
Q ss_pred CeEEEECCCHHHHHHHHhc--cCC--CcEEEcCCC
Q 010421 5 SKIAIIGAGVSGLAAVKQL--RHH--NPVVFEASD 35 (511)
Q Consensus 5 ~~v~IIGaG~aGl~aa~~l--~g~--~v~v~e~~~ 35 (511)
++|+|||.|.-|-+.|+.| .|. +|..+|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 3799999999999999999 665 577788864
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=82.41 E-value=0.3 Score=44.99 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=28.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||+|.+|+=+|..|++.+. +|.++.+.+.
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~-----kVlvLEaG~~ 38 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGY-----KVAMFDIGEI 38 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-----EEEEECSSCC
T ss_pred cEEEECcCHHHHHHHHHHhhCCC-----eEEEEecCCC
Confidence 59999999999999999999764 5999998653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=82.38 E-value=0.32 Score=37.56 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=28.4
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
+|+|+|+|..|..+|..|.+.+.. |+++.+++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~-----v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHD-----IVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE-----EEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC-----cceecCCh
Confidence 699999999999999999988754 99998865
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=81.76 E-value=0.34 Score=39.48 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=30.6
Q ss_pred ccCCCcEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 010421 194 LLKDKKVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTT 235 (511)
Q Consensus 194 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~ 235 (511)
..++|+|+|+|+|-+|--++..|...+ ++|+++.|+.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~-----~~i~I~nR~~ 51 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQ-----QNIVLANRTF 51 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTT-----CEEEEEESSH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccC-----ceeeeccchH
Confidence 367899999999999988888887643 3599999975
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=81.72 E-value=0.75 Score=36.33 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=27.6
Q ss_pred eEEEECCCHHHHHHHHhc--cCCCcEEEcCCC
Q 010421 6 KIAIIGAGVSGLAAVKQL--RHHNPVVFEASD 35 (511)
Q Consensus 6 ~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~~ 35 (511)
.|+|+|.|..|..++..| .|.+++++|..+
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 599999999999999999 899999999863
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=81.58 E-value=0.43 Score=38.83 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.7
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..++|+|+|+|-++-+++..| .+.+|+|+.|+
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~ 50 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT 50 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence 357899999999999999998 56789999885
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=81.50 E-value=0.61 Score=38.02 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=27.2
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCC-CcEEEcCCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHH-NPVVFEASD 35 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~-~v~v~e~~~ 35 (511)
...|+|+|+|+.|+.++..+ .|. +|+++|.++
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence 35699999999999999998 774 699999864
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=81.39 E-value=0.36 Score=44.01 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=28.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEEecCc
Q 010421 199 KVAVVGFKKSAIDLAKECAESNQGPEGQPCTMIVRTTH 236 (511)
Q Consensus 199 ~V~VvG~G~sg~d~a~~l~~~~~~~~~~~Vtl~~R~~~ 236 (511)
.|+|||||.+|.=+|..|++....-.+.+|+++.|++.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 59999999999999999975310000235999999874
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.97 E-value=0.61 Score=37.40 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 4 YSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 4 ~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..+|+|+|+|+.|+.++..+ .|.+|++++.+
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~ 60 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG 60 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence 45799999999999988887 88899999875
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.22 E-value=0.73 Score=36.85 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCCeEEEECCCHHHHHHHHhc--cCCCcEEEcCC
Q 010421 3 NYSKIAIIGAGVSGLAAVKQL--RHHNPVVFEAS 34 (511)
Q Consensus 3 ~~~~v~IIGaG~aGl~aa~~l--~g~~v~v~e~~ 34 (511)
..+.|+|||-|..|-.+|..+ .|.+|+++|..
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d 56 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEID 56 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence 357899999999999999999 89999999985
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