Citrus Sinensis ID: 010439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Protein Sequence
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccccccHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHccccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccEEEEcccccEEEEEcccccccHHHHHHHHHHccccccccccccccccccccHcccccccHHHHHccccccccccccccccHHHcccccHccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHcccccEEccccccccccccccccccccccccccccccccEEEEEEccccEEEEcccccHHHHHHHHHHHHHcccccccEEEcEcEEEEEEEc
Coil and Loop (DISEMBL)
mgqslnsmnqhqqrqsKDELLYQWVIAGDVDAIRALRSQGaslewmdkegktpLIVACMDSGLINVAKTLIELGAninayrpggrggtplhhaakrgLEPTVRLLLSCGanalvrnddchtALGVARIKGHINVVRAIESHICYFCgwlrefygpsflEALAPQLMSRKIWVVVIpcgtanpskplrfelviypslqdvqPRAVIALWKAKidepkfhqpdpsltiyDQATKIRYKFasanegdkhQLQWLDnacrgtsqfqflpsannhqsaeainangwgnsanaeshngwgaaarteascsgwmdepkkedykgwgdeqakedyngwgasnsepvcgkredgqthntpapilqtstrisgkedyngwgvpnfepifkqsqdvqtlanpapfsqisnrnsssasaapsappipevesgegpirypsvensvadlhlpvledgvsasnvkddgsssscvicweapvegacvpcghmagcmSCLSeikakkgdcpvcrtkINQVIRLYTV
Flexible Loop (DISEMBL)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIdepkfhqpdpslTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKRedgqthntpapilqtstrisgKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEikakkgdcpvcrtkinqvirlytv
Low Complexity Region (SEG)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNsssasaapsappipEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered region (IsUnstruct)
*******************LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFQFL*****************************************************************************************************DYNGWGVPNFEPIF******************************************************************************SCVICWEAPVEGACV**************************************
Disordered Region (DISOPRED)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG*KHQLQWLDNACRGTSQF********************************************************************************************************************************************************************************************************CWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered Region (DISEMBL)
*****************DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFQFLPSANNHQSAEAINANGWGNSANAESH**************GWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQI*********************SGEGPIRYPSVENSVADLHLPVLEDGVSAS*********SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered Region (DISPRO)
*****NSMNQH**RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFQFLPSANNHQSAEAINANGWGNSANAE**************************************************************************G****N*W**P*****************PAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLH******************SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	510	2.2.26 [Sep-21-2011]
Q7XI08	513	Probable E3 ubiquitin-pro	yes	no	0.911	0.906	0.448	1e-121
Q4FE47	462	Putative E3 ubiquitin-pro	no	no	0.486	0.536	0.584	2e-89
Q9FPH0	376	Putative E3 ubiquitin-pro	no	no	0.490	0.664	0.527	2e-76
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.229	0.342	0.35	4e-11
Q9VCA8	4001	Ankyrin repeat and KH dom	yes	no	0.213	0.027	0.369	2e-10
O75179	2603	Ankyrin repeat domain-con	no	no	0.245	0.048	0.338	2e-09
Q99NH0	2603	Ankyrin repeat domain-con	no	no	0.245	0.048	0.338	2e-09
Q505D1	1053	Serine/threonine-protein	no	no	0.219	0.106	0.362	3e-09
Q8IWZ3	2542	Ankyrin repeat and KH dom	no	no	0.258	0.051	0.313	7e-09
O44997	1425	Death-associated protein	yes	no	0.211	0.075	0.333	8e-09

>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/542 (44%), Positives = 319/542 (58%), Gaps = 77/542 (14%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ V  G+ D IRALR+QGA LEW+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 184 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 243

Query: 254 ACRGTSQFQFL-------------------------PSANNHQSAEAINANGWGNSANAE 288
           AC G  Q   +                         PS  + + A AINA+    SA AE
Sbjct: 244 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASIL--SAIAE 301

Query: 289 SHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 348
                     T A+               WG+  +    NGWG  ++      +  GQ  
Sbjct: 302 GVPDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV- 344

Query: 349 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 408
               P++ +S+       YNGW VP       QS      +  + F  +  + +  +   
Sbjct: 345 ----PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPV 391

Query: 409 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK------------DDGSS 456
           P+APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D ++
Sbjct: 392 PTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANA 451

Query: 457 S--------SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           S        +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY
Sbjct: 452 SNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLY 511

Query: 509 TV 510
            V
Sbjct: 512 AV 513

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1

 Score =  330 bits (846), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/272 (58%), Positives = 192/272 (70%), Gaps = 24/272 (8%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q+QSK ELLYQ V  G+ + IRAL   G  LEWMD+EGKTPLI+ACM+S L +VAKTLIE
Sbjct: 3   QQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTLIE 62

Query: 73  LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
           LG+N+NAYRPG   GTPLHHAAKRGLE TV+LLLS GAN LV NDDC T L VAR+KG  
Sbjct: 63  LGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKGFS 122

Query: 133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192
           NVVRAIE HIC F GW+REFYGP+FL+  APQL+SR++WVV++P G+ NP+KP + ELV+
Sbjct: 123 NVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLELVV 182

Query: 193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT--------------------- 231
           Y SLQD QPR V+ LWKA ++EPK  Q D S+ I D +T                     
Sbjct: 183 YASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNSTIPSRRMKKRRVCASHGRRRPQ 242

Query: 232 ---KIRYKFASANEGDKHQLQWLDNACRGTSQ 260
              + R KFA + EGD  QL+W  +AC+G  Q
Sbjct: 243 VVRQTRLKFAPSTEGDSQQLKWFCDACKGIPQ 274

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FPH0|XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT34 OS=Arabidopsis thaliana GN=XBAT34 PE=2 SV=1

 Score =  286 bits (733), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/275 (52%), Positives = 184/275 (66%), Gaps = 25/275 (9%)

Query: 11  HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTL 70
            QQ QSKDE+L+Q V   +V+ I++L  +GA LE +DK G+TPLI+AC +  L +VAKTL
Sbjct: 3   QQQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVAKTL 62

Query: 71  IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 130
           +ELG+N+NAYR G  GGTPLHHAAKRGL  TV+LLLS GAN LV +DD  TAL VAR +G
Sbjct: 63  LELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVARDEG 122

Query: 131 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFEL 190
           + NVVRAIESHIC F G +RE+ G S L   APQL+SRK+WVVV+P G+ NP+KPL+ EL
Sbjct: 123 YSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLKLEL 182

Query: 191 VIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA-------------------- 230
           V+Y S+QD QPR VI LWKA ++EPK  + D S+ I D +                    
Sbjct: 183 VLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDSRSPKSMRQRRESGFISQARR 242

Query: 231 -----TKIRYKFASANEGDKHQLQWLDNACRGTSQ 260
                 +IR K A+  +GD  Q+ W   AC+G  Q
Sbjct: 243 WAQVDRQIRLKLAAEIKGDMKQMNWFSEACKGVPQ 277

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           +++Q    GDV+ ++A  + G + +  D EG+T L  AC   G +  A+ LI+ GA++NA
Sbjct: 221 IVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGELKCAQVLIDAGASVNA 279

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
                   TPLH+AA  G +  V LLL  GA   ++N D  T + VA++   + VV+ +E
Sbjct: 280 V--DKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLE 337

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing protein mask OS=Drosophila melanogaster GN=mask PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD ++ L   GA++E  ++ G TPL+ A   +G + VAK L+E GA IN +    +  
Sbjct: 663 GQVDVVKVLLKHGANVEEQNENGHTPLMEAA-SAGHVEVAKVLLEHGAGINTHSNEFKE- 720

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
           + L  A  +G    VR LL  GA+   + D+ HTAL  A + GH+ V R +
Sbjct: 721 SALTLACYKGHLDMVRFLLQAGADQEHKTDEMHTALMEASMDGHVEVARLL 771

Mediator of receptor tyrosine kinase (RTK) signaling, and may act either downstream of MAPK or transduce signaling through a parallel branch of the RTK pathway.

Drosophila melanogaster (taxid: 7227)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 12   QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
            Q   + D  L      G  + ++ L  +GAS+E  DK+G TPLI+A   +G + V + L+
Sbjct: 1078 QTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAAT-AGHVGVVEILL 1136

Query: 72   ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
            + GA+I A     +  TPL  A   G +  V LLL+ GAN   RN   +T L +A   G+
Sbjct: 1137 DNGADIEAQSERTKD-TPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAASGGY 1195

Query: 132  INVVRAI 138
            +N+++ +
Sbjct: 1196 VNIIKIL 1202

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 12   QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
            Q   + D  L      G  + ++ L  +GAS+E  DK+G TPLI+A   +G + V + L+
Sbjct: 1074 QTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAAT-AGHVGVVEILL 1132

Query: 72   ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
            + GA+I A     +  TPL  A   G +  V LLL+ GAN   RN   +T L +A   G+
Sbjct: 1133 DNGADIEAQSERTKD-TPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAASGGY 1191

Query: 132  INVVRAI 138
            +N+++ +
Sbjct: 1192 VNIIKIL 1198

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.

Mus musculus (taxid: 10090)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 17  KDELLYQWV-IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
           KD     W    G ++ ++ L S GA +   DK+  TPL  A   SG+I+V K L++LG 
Sbjct: 172 KDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAA-SSGMISVVKYLLDLGV 230

Query: 76  NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
           ++N   P   G TPLH A   G +  V  L+ CGAN   +N+   T L  A    H
Sbjct: 231 DMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTH 284

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 5   LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI 64
           L+  + + Q  + +  L      G VD ++ L ++GA++E  ++ G TPL+ A   +G +
Sbjct: 293 LHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAA-SAGHV 351

Query: 65  NVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG 124
            VA+ L++ GA IN +    +  + L  A  +G    VR LL  GA+   + D+ HTAL 
Sbjct: 352 EVARVLLDHGAGINTHSNEFKE-SALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALM 410

Query: 125 VARIKGHINVVRAI 138
            A + GH+ V R +
Sbjct: 411 EACMDGHVEVARLL 424

May play a role as a scaffolding protein that may be associated with the abnormal phenotype of leukemia cells. Isoform 2 may possess an antiapoptotic effect and protect cells during normal cell survival through its regulation of caspases.

Homo sapiens (taxid: 9606)

>sp|O44997|DAPK_CAEEL Death-associated protein kinase dapk-1 OS=Caenorhabditis elegans GN=dapk-1 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD ++AL    + ++ ++++GKT LI+A +++G +++A  LI  G +IN       G 
Sbjct: 536 GHVDCVQALLDANSPIDAVEQDGKTALIIA-LENGNVDIASILITNGCDIN--HADHHGD 592

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
           T LH A+K GL   V+ L  C       N +  TAL +A   GH++++R +
Sbjct: 593 TALHIASKHGLLQAVQTLCHCAVTVDSVNANKKTALHLAAHYGHVDIIRVL 643

Negative regulator of barrier repair and innate immune responses to wounding. Appears to act downstream from or in parallel to muscarinic signaling in the regulation of autophagy.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
109676318	499	auxin-regulated protein-like protein [Po	0.890	0.909	0.547	1e-155
225446355	497	PREDICTED: putative E3 ubiquitin-protein	0.886	0.909	0.504	1e-141
147799985	500	hypothetical protein VITISV_013890 [Viti	0.925	0.944	0.480	1e-122
212275778	517	uncharacterized protein LOC100191485 [Ze	0.947	0.934	0.445	1e-121
357122966	515	PREDICTED: probable E3 ubiquitin-protein	0.882	0.873	0.441	1e-119
115471873	513	Os07g0446100 [Oryza sativa Japonica Grou	0.911	0.906	0.448	1e-119
242048338	516	hypothetical protein SORBIDRAFT_02g01061	0.949	0.937	0.458	1e-119
125600072	493	hypothetical protein OsJ_24077 [Oryza sa	0.872	0.902	0.426	1e-109
224082824	261	predicted protein [Populus trichocarpa]	0.503	0.984	0.730	1e-109
125558167	493	hypothetical protein OsI_25836 [Oryza sa	0.901	0.933	0.428	1e-109

>gi|109676318|gb|ABG37641.1| auxin-regulated protein-like protein [Populus trichocarpa]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 304/555 (54%), Positives = 355/555 (63%), Gaps = 101/555 (18%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQSL+SM Q   +QSKDELLYQ  IAG+VDA++AL S+GA LEW+D++GKTPLIVACMD
Sbjct: 1   MGQSLDSMTQ---KQSKDELLYQLAIAGNVDAVKALCSEGAILEWIDRDGKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           SGL NVAK LIE+GAN+NAYRPG   GTPLHHA KRGLE TV+LLLS GANALVRNDDC 
Sbjct: 58  SGLYNVAKVLIEMGANVNAYRPGRHAGTPLHHAVKRGLEQTVKLLLSSGANALVRNDDCQ 117

Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180
           TAL VARIKG+IN+VR IESHICYF GWLREFYGP FL A APQ +SRKIW  VIP G++
Sbjct: 118 TALDVARIKGNINIVRTIESHICYFTGWLREFYGPGFLRAFAPQFLSRKIWAAVIPQGSS 177

Query: 181 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240
           NP  P + ELVIYPS QDVQPR VIALW A+I+EP F++PDP LTI+DQ+TK +YK ASA
Sbjct: 178 NPMTPKKLELVIYPSSQDVQPRTVIALWNAEIEEPNFNRPDPELTIFDQSTKTQYKLASA 237

Query: 241 NEGDKHQLQWLDNACRGTSQFQFLP----------------------------------- 265
           NEGDK QL WL +AC G  Q    P                                   
Sbjct: 238 NEGDKQQLHWLYDACSGIPQVMLPPMYGNPPTTVPVVGHHTSAEAVGSAMAIGGGSIQST 297

Query: 266 ------SANNHQSAEAINANGWGNSANAESHNGWG---AAARTEASCSGWMDEPKKEDYK 316
                   N HQS+E INANGW +    +SHN WG   A+  +EA  SGWM         
Sbjct: 298 TEDNPLHPNTHQSSEVINANGWEDPVRGDSHNRWGVTVASTHSEARSSGWM--------- 348

Query: 317 GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFE 376
               E  KED+NG    N  P                        SG +D+         
Sbjct: 349 ---GEAPKEDHNGCAVPNMGP------------------------SGSQDH--------- 372

Query: 377 PIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADL 436
                   VQT  +  P S+ S  N++S  +APSAPPIP+ E   GPI YPS + S+ DL
Sbjct: 373 --------VQTRYDIPPVSETSGGNTASVPSAPSAPPIPDEELDAGPIHYPSFDFSLLDL 424

Query: 437 HLPVLEDGVSA-SNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCP 495
            +P +E G S  S+V   G+SSSC+ICWEAPVEGAC+PCGHMAGCM+CLSEIKAKKG CP
Sbjct: 425 SVPAIELGASVTSDVNKGGTSSSCIICWEAPVEGACIPCGHMAGCMTCLSEIKAKKGVCP 484

Query: 496 VCRTKINQVIRLYTV 510
           +CR+ INQV RLY V
Sbjct: 485 ICRSNINQVTRLYAV 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446355|ref|XP_002274072.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 [Vitis vinifera] gi|302143289|emb|CBI21850.3| unnamed protein product [Vitis vinifera]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 280/555 (50%), Positives = 328/555 (59%), Gaps = 103/555 (18%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQS  SM     RQSKDELLYQ V  G+++AI+AL  +GASLEW D E KTPLIVACMD
Sbjct: 1   MGQSAGSMGG---RQSKDELLYQHVATGNIEAIKALCREGASLEWFDSEAKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           S LI VA+TLI+LGAN+NAYRPG   GTPLHHAAKRGL+ TV+LLLS GANALVRNDD  
Sbjct: 58  SNLIMVAQTLIDLGANVNAYRPGREAGTPLHHAAKRGLDQTVKLLLSKGANALVRNDDGQ 117

Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180
           T+L VARI G+INVVR IE+HIC F GWLRE +GP FL+ALAPQL+SRKIWVV+IP G  
Sbjct: 118 TSLDVARINGYINVVRTIENHICLFSGWLRELHGPGFLKALAPQLLSRKIWVVIIPSGFN 177

Query: 181 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240
           NPSKPLR ELVIY + QD QP  VIAL    I+EPKFHQ DP+L I+D++ K RYK ASA
Sbjct: 178 NPSKPLRLELVIYSNFQDAQPCTVIALGNVNIEEPKFHQSDPALIIFDKSNKTRYKLASA 237

Query: 241 NEGDKHQLQWLDNACRGTSQFQFLPSANNH--------------------------QSA- 273
           NEGDK QL+WL NACRG    Q LP+   H                          QSA 
Sbjct: 238 NEGDKQQLRWLYNACRGIP--QVLPTPMLHDARPSVPASQTATEAAELAMAVGASIQSAA 295

Query: 274 --------------EAINANGWGNSANAESHNGW---GAAARTEASCSGWMDEPKKEDYK 316
                         EA + NGWGN  +  SH GW   G    + +S SGW DE K     
Sbjct: 296 VDQPVLLSSTRLGSEASSTNGWGNPVDNTSHGGWSLDGTPTHSASSSSGWADESK----- 350

Query: 317 GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFE 376
                  + ++NG G   S  +  + +  +T N    ++QTS               N  
Sbjct: 351 -------RGEFNGLGVPESRLIRNQTQLNKTQNNIPQVVQTS---------------NTN 388

Query: 377 PIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADL 436
           P+                                          EGP+ YP ++ S  DL
Sbjct: 389 PVLASPAPSAPPI--------------------------PEALTEGPVYYPPIDLSPVDL 422

Query: 437 HLPVLE-DGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCP 495
            +P  E D    S  KD G SSSCVICWEAP+EGAC+PCGHMAGCM+CL+EIKAKKG CP
Sbjct: 423 SVPAAEYDAAGTSKTKDKGDSSSCVICWEAPIEGACIPCGHMAGCMTCLNEIKAKKGVCP 482

Query: 496 VCRTKINQVIRLYTV 510
           VCR KI QVI+LY V
Sbjct: 483 VCRAKIQQVIKLYAV 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799985|emb|CAN72662.1| hypothetical protein VITISV_013890 [Vitis vinifera]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/524 (48%), Positives = 315/524 (60%), Gaps = 52/524 (9%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q+QSKDELL+Q V+ G+V+ I+AL  +GA LEW D+EGKTPLIVACM S L NVAKTLIE
Sbjct: 3   QQQSKDELLHQQVVYGNVEGIKALSREGAGLEWTDREGKTPLIVACMFSELFNVAKTLIE 62

Query: 73  LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
           LGAN+NAYRPG   GTPLHHAAK+GLE TV LLLS GANALV NDDC TAL VAR KGH 
Sbjct: 63  LGANVNAYRPGRHAGTPLHHAAKKGLEETVNLLLSHGANALVMNDDCQTALDVARAKGHS 122

Query: 133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192
            VVR IESHIC F GWLREFYGP FLE LAPQ +SRK+WVV++PCG+  P+KP + EL I
Sbjct: 123 RVVRVIESHICLFSGWLREFYGPGFLEVLAPQWVSRKVWVVILPCGSRKPTKPFKLELAI 182

Query: 193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT--------------------- 231
           Y SLQD QPR  IALWKA +DE KF  PDP++ I D +T                     
Sbjct: 183 YSSLQDAQPRTTIALWKANMDEAKFEDPDPAVIILDNSTISRGRRRRRCYTSREARCKPR 242

Query: 232 ---KIRYKFASANEGDKHQLQWLDNACRGTSQFQFLPSANNHQSAEAINANGWGNSANAE 288
              + + K A   + D  QLQW  NAC+G  Q    P+  ++    A+       + + E
Sbjct: 243 ALRQTQIKLAPEKKSDSQQLQWFCNACKGIPQAMHPPAFLHNAQTPAVPPTAPPTAEDLE 302

Query: 289 SHNGWGAAARTEASCSGWMDE-PKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQT 347
                  A    AS    M E P   D     +  A   +N     NS  +         
Sbjct: 303 ------LAMAINASIQSAMQEGPPLLDSPSSFENGASTSWN-----NSVNI-------TN 344

Query: 348 HNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASA 407
           HN P  ++      S K   +   V    P    +Q +Q        + I +    +++A
Sbjct: 345 HNCPDALVAPVAPASSKASSSECVVHEAGPSTNSTQHIQI------ETHIPDIPVQASTA 398

Query: 408 APSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSAS-NVKDDGSSSSCVICWEAP 466
             SAPPI +    +GP++YPS+++S  DL  P  E   +AS   K+ G++SSCVIC +AP
Sbjct: 399 --SAPPIADEVVDDGPVQYPSIDSSPVDLTSPAFETSAAASEQSKEGGAASSCVICLDAP 456

Query: 467 VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 510
           +EGAC+PCGHMAGCMSCL+EIKAKK  CPVCR KI+QV++LY+V
Sbjct: 457 IEGACIPCGHMAGCMSCLNEIKAKKWGCPVCRAKIDQVVKLYSV 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212275778|ref|NP_001130389.1| uncharacterized protein LOC100191485 [Zea mays] gi|194689006|gb|ACF78587.1| unknown [Zea mays] gi|195647730|gb|ACG43333.1| protein binding protein [Zea mays] gi|224031463|gb|ACN34807.1| unknown [Zea mays] gi|414884433|tpg|DAA60447.1| TPA: putative RING zinc finger and ankyrin repeat containing protein [Zea mays]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/528 (44%), Positives = 311/528 (58%), Gaps = 45/528 (8%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+VD IR LR QGA LEW+DKEGKTPL++ACM   L +VAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNVDGIRTLRGQGAGLEWIDKEGKTPLMLACMRPDLFDVAKVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GL+ TV LLLS GAN  + NDDC+TAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSHCGTALHHAAKKGLQQTVHLLLSHGANPFIPNDDCNTALELAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  +C FCGW+RE Y P+FL+A+APQ M+RKIW VV+P     P++PL+ E+ IY
Sbjct: 124 VVRAIEGRLCLFCGWMRENYAPAFLDAIAPQFMTRKIWAVVLPREVRTPTRPLKLEIAIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +PR+V+ LWK +I++PK +Q DPS+ I+D+ TK RYK   A EGDK QLQW  N
Sbjct: 184 PELQASKPRSVLKLWKCQIEQPKLNQADPSIIIFDKGTKTRYKILPAYEGDKQQLQWFYN 243

Query: 254 ACRGTSQF--------QFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSG 305
           AC G +Q           LP  N   +  ++  +     +  +        A  +++ + 
Sbjct: 244 ACCGMAQVLNTAPVAPANLPMPNPAPAISSVAPSEQSAPSKEDVELAMAINASIQSAIAE 303

Query: 306 WMDEPKKE------DYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTST 359
            +  P  +      +  GW    +   +NGWG   +      +  GQ+        Q   
Sbjct: 304 GVSVPNVQPNASTPNNNGWAAPPSN-SHNGWGPPATP--APSKTSGQS--------QVRV 352

Query: 360 RISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVES 419
                  YNGW VP        S+  QT  NP     +  + +  A   P+APP  E   
Sbjct: 353 DAPSSSTYNGWDVPGTSSSQSSSKPHQTQTNP---PVLIPQEALQALPTPTAPPFAEETF 409

Query: 420 GEGPIRYPSVENSVADLHLPVLEDGVSAS---------------NVKDDGS--SSSCVIC 462
             GP+ YPS++++  D+ +P    G S +               +  D G   S +CVIC
Sbjct: 410 YNGPVHYPSIDSTPVDVTMPATTGGGSTTVIATAAPTEQLENEADASDSGKTPSGTCVIC 469

Query: 463 WEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 510
            +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR  INQV+RLY V
Sbjct: 470 LDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRATINQVVRLYAV 517

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122966|ref|XP_003563184.1| PREDICTED: probable E3 ubiquitin-protein ligase XBOS34-like [Brachypodium distachyon]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/559 (44%), Positives = 315/559 (56%), Gaps = 109/559 (19%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+++ IR LR+QGA LEW+DKEGKTPL+VA M   L+NVAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNIEGIRTLRTQGAGLEWIDKEGKTPLMVASMRPDLLNVAKVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAKRGLE TV LLLS GAN  + NDDC+TAL +AR KGH+ 
Sbjct: 64  GANVNAYRPGSHAGTALHHAAKRGLELTVHLLLSHGANPFITNDDCNTALDLAREKGHVK 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ M+RKIW V++P    NP++P++ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFMTRKIWAVILPREARNPARPVKLELAIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +PRAV+ LWK++I+EPK++Q DPS+ I+D+ TK RYK  SA EGDK Q++   +
Sbjct: 184 PELQASKPRAVVKLWKSQIEEPKYNQADPSMAIFDKVTKTRYKILSAFEGDKQQIRSFYS 243

Query: 254 ACRGTSQFQFL---------------------------PSANNHQSAEAINA-------- 278
           AC G +Q   +                           PS  + + A AINA        
Sbjct: 244 ACCGMAQVVSMVPARPANAPVPNPLPINTSSTPSVLSTPSKEDVELAMAINASIQSAIAE 303

Query: 279 --------------NGWGNSANAESHNGWG---AAARTEASCSGWMDEPKKEDYKGWGDE 321
                         NGWGN+AN+ S +GWG   A A ++ S  G  D P    Y GW   
Sbjct: 304 GVPNIEPTTSTINTNGWGNTANS-SLSGWGPPDAHAPSKISGQGQADAPSSSTYNGW--- 359

Query: 322 QAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQ 381
               D  G  AS S     K +   +   P  +  T                        
Sbjct: 360 ----DIPGTSASQSSSTPNKSQTNPSVVIPQEVPPTV----------------------- 392

Query: 382 SQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVL 441
                    P P +  +    ++   A       E     GPI+YPS++ +  D+ +P  
Sbjct: 393 ---------PTPTALPAIPTPTAPPLA-------EGTFYNGPIQYPSIDFTPVDVTMPTA 436

Query: 442 EDGVSASNVK---DDGSSSS-------CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK 491
           E  V  ++ K   +D  +SS       CVIC +APVEGAC+PCGHMAGCMSCL +I++KK
Sbjct: 437 EGAVVVNSSKPGENDADTSSGNTPSGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKK 496

Query: 492 GDCPVCRTKINQVIRLYTV 510
             CP+CR KINQ+IRLY V
Sbjct: 497 WGCPICRAKINQIIRLYAV 515

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115471873|ref|NP_001059535.1| Os07g0446100 [Oryza sativa Japonica Group] gi|75327171|sp|Q7XI08.1|XB34_ORYSJ RecName: Full=Probable E3 ubiquitin-protein ligase XBOS34; AltName: Full=Ankyrin repeat domain and RING finger-containing protein XBOS34; AltName: Full=XB3 protein homolog 4 gi|33146928|dbj|BAC79949.1| auxin-regulated protein-like protein [Oryza sativa Japonica Group] gi|113611071|dbj|BAF21449.1| Os07g0446100 [Oryza sativa Japonica Group]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/542 (44%), Positives = 319/542 (58%), Gaps = 77/542 (14%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ V  G+ D IRALR+QGA LEW+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 184 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 243

Query: 254 ACRGTSQFQFL-------------------------PSANNHQSAEAINANGWGNSANAE 288
           AC G  Q   +                         PS  + + A AINA+    SA AE
Sbjct: 244 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASIL--SAIAE 301

Query: 289 SHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 348
                     T A+               WG+  +    NGWG  ++      +  GQ  
Sbjct: 302 GVPDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV- 344

Query: 349 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 408
               P++ +S+       YNGW VP       QS      +  + F  +  + +  +   
Sbjct: 345 ----PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPV 391

Query: 409 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK------------DDGSS 456
           P+APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D ++
Sbjct: 392 PTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANA 451

Query: 457 S--------SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           S        +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY
Sbjct: 452 SNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLY 511

Query: 509 TV 510
            V
Sbjct: 512 AV 513

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242048338|ref|XP_002461915.1| hypothetical protein SORBIDRAFT_02g010610 [Sorghum bicolor] gi|241925292|gb|EER98436.1| hypothetical protein SORBIDRAFT_02g010610 [Sorghum bicolor]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/526 (45%), Positives = 310/526 (58%), Gaps = 42/526 (7%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+VD IR LR QG  LEW+DKEGKTPL+VACM   L +VAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNVDGIRTLRGQGVGLEWIDKEGKTPLMVACMRPDLFDVAKVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GL+ TV LLLS GAN  + NDDC+TAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSHCGTALHHAAKKGLQQTVHLLLSHGANPFIPNDDCNTALELAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  +  FCGW+RE Y P+FL+A+APQ M+RKIW V++P     P++PL+ EL IY
Sbjct: 124 VVRAIEGRLSLFCGWMRENYAPAFLDAIAPQFMTRKIWAVILPREVRTPTRPLKLELAIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +PR V+ LWK +I++PK +Q DPS+ I+D+ TK RYK   A EGDK QLQW  N
Sbjct: 184 PELQASKPRVVVKLWKCQIEQPKLNQADPSIIIFDKGTKTRYKILPAYEGDKQQLQWFYN 243

Query: 254 ACRGTSQF---QFLPSANNHQSAEA-INANGWGNSANAESHNGWGAAARTEASCSGWMDE 309
           AC G +Q      +P AN      A  N++   +  +A S      A    AS    + E
Sbjct: 244 ACCGMAQVFNTAPVPPANLPMPNPAPANSSVAPSELSAPSKEDVELAMAINASIQSAIAE 303

Query: 310 --------PKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRI 361
                       +  GW    +   +NGWG S + P   K          AP        
Sbjct: 304 GVPNVQPNASTPNNNGWSIPPSN-SHNGWGPSVT-PAPSKTSGQSQARVDAP-------- 353

Query: 362 SGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGE 421
           S    YNGW VP        S+  +T  NP     +  + +  A   P+APP  E     
Sbjct: 354 SSSSTYNGWDVPGTSSGQSSSKPHKTETNP---PVLIPQEALQALPTPTAPPFAEETFYS 410

Query: 422 GPIRYPSVENSVADLHLPVLEDGV---------------SASNVKDDGS--SSSCVICWE 464
           GP+ YPS++++  D+ +P   +G                + ++  D G   S +CVIC +
Sbjct: 411 GPVHYPSIDSTPVDVTMPATTEGGTTGSTTAAAPTKQEENEADASDSGKTPSGTCVICLD 470

Query: 465 APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 510
           APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR  INQV+RLY V
Sbjct: 471 APVEGACIPCGHMAGCMSCLKDIESKKWGCPICRATINQVVRLYAV 516

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125600072|gb|EAZ39648.1| hypothetical protein OsJ_24077 [Oryza sativa Japonica Group]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/542 (42%), Positives = 305/542 (56%), Gaps = 97/542 (17%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ                    +W+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQ--------------------QWIDKEGKTPLMVASMRPDLINVVQVLIEL 43

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 44  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 103

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 104 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 163

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 164 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 223

Query: 254 ACRGTSQFQFL-------------------------PSANNHQSAEAINANGWGNSANAE 288
           AC G  Q   +                         PS  + + A AINA+    SA AE
Sbjct: 224 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASIL--SAIAE 281

Query: 289 SHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 348
                     T A+               WG+  +    NGWG  ++      +  GQ  
Sbjct: 282 GVPDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV- 324

Query: 349 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 408
               P++ +S+       YNGW VP       QS      +  + F  +  + +  +   
Sbjct: 325 ----PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPV 371

Query: 409 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK-------------DDGS 455
           P+APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D  +
Sbjct: 372 PTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANA 431

Query: 456 SSS-------CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           S+S       CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY
Sbjct: 432 SNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLY 491

Query: 509 TV 510
            V
Sbjct: 492 AV 493

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082824|ref|XP_002306854.1| predicted protein [Populus trichocarpa] gi|222856303|gb|EEE93850.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/260 (73%), Positives = 216/260 (83%), Gaps = 3/260 (1%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQSL+SM Q   +QSKDELLYQ  IAG+VDA++AL S+GA LEW+D++GKTPLIVACMD
Sbjct: 1   MGQSLDSMTQ---KQSKDELLYQLAIAGNVDAVKALCSEGAILEWIDRDGKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           SGL NVAK LIE+GAN+NAYRPG   GTPLHHA KRGLE TV+LLLS GANALVRNDDC 
Sbjct: 58  SGLYNVAKVLIEMGANVNAYRPGRHAGTPLHHAVKRGLEQTVKLLLSSGANALVRNDDCQ 117

Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180
           TAL VARIKG+IN+VR IESHICYF GWLREFYGP FL A APQ +SRKIW  VIP G++
Sbjct: 118 TALDVARIKGNINIVRTIESHICYFTGWLREFYGPGFLRAFAPQFLSRKIWAAVIPQGSS 177

Query: 181 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240
           NP  P + ELVIYPS QDVQPR VIALW A+I+EP F++PDP LTI+DQ+TK +YK ASA
Sbjct: 178 NPMTPKKLELVIYPSSQDVQPRTVIALWNAEIEEPNFNRPDPELTIFDQSTKTQYKLASA 237

Query: 241 NEGDKHQLQWLDNACRGTSQ 260
           NEGDK QL WL +AC G  Q
Sbjct: 238 NEGDKQQLHWLYDACSGIPQ 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125558167|gb|EAZ03703.1| hypothetical protein OsI_25836 [Oryza sativa Indica Group]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/527 (42%), Positives = 301/527 (57%), Gaps = 67/527 (12%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ                    +W+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQ--------------------QWIDKEGKTPLMVASMRPDLINVVQVLIEL 43

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 44  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 103

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 104 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 163

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 164 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 223

Query: 254 ACRGTSQFQFLPSAN--NHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDE-- 309
           AC G  Q   +  A   N       +A+   +  +  S      A    AS    + E  
Sbjct: 224 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMVINASIQSAIAEGV 283

Query: 310 ------PKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISG 363
                         WG+  +    NGWG  ++      +  GQ      P++ +S+    
Sbjct: 284 PDVQPITTTTATNDWGNPPSN-SLNGWGPPDTS--APSKTSGQV-----PVVTSSS---- 331

Query: 364 KEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGP 423
              YNGW VP       QS      +  + F  +  + +  +   P+APP+      +GP
Sbjct: 332 -STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPVPTAPPLAVGTFYDGP 386

Query: 424 IRYPSVENSVADLHLPVLEDGVSASNVK-------------DDGSSSS-------CVICW 463
           I+YPS++++  D+ +P  + G + S+ K             D  +S+S       CVIC 
Sbjct: 387 IQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANASNSGNTPPGTCVICL 446

Query: 464 EAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 510
           +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY V
Sbjct: 447 DAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 493

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
TAIR|locus:2086263	462	XBAT35 "XB3 ortholog 5 in Arab	0.429	0.474	0.662	1.2e-110
TAIR|locus:505006458	376	XBAT34 "XB3 ortholog 4 in Arab	0.435	0.590	0.605	1.8e-92
TAIR|locus:2827572	344	AKR2B "ankyrin repeat-containi	0.245	0.363	0.328	1e-10
ZFIN|ZDB-GENE-030916-4	728	ankrd6b "ankyrin repeat domain	0.382	0.267	0.277	1e-09
UNIPROTKB|Q5ZIZ1	172	PPP1R12A "Protein phosphatase	0.190	0.563	0.35	7.7e-09
UNIPROTKB|E1C4S8	721	ANKRD6 "Uncharacterized protei	0.235	0.166	0.349	1.1e-08
TAIR|locus:4515102961	399	APD4 "ABERRANT POLLEN DEVELOPM	0.168	0.215	0.388	1.6e-08
MGI|MGI:2145661	1053	Ankrd28 "ankyrin repeat domain	0.219	0.106	0.362	1.8e-08
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.217	0.107	0.385	2e-08
UNIPROTKB|E1BJ12	278	ASB13 "Uncharacterized protein	0.209	0.384	0.347	2.7e-08

TAIR|locus:2086263 XBAT35 "XB3 ortholog 5 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 1.2e-110, Sum P(3) = 1.2e-110
 Identities = 145/219 (66%), Positives = 173/219 (78%)

Query:    13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
             Q+QSK ELLYQ V  G+ + IRAL   G  LEWMD+EGKTPLI+ACM+S L +VAKTLIE
Sbjct:     3 QQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTLIE 62

Query:    73 LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
             LG+N+NAYRPG   GTPLHHAAKRGLE TV+LLLS GAN LV NDDC T L VAR+KG  
Sbjct:    63 LGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKGFS 122

Query:   133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192
             NVVRAIE HIC F GW+REFYGP+FL+  APQL+SR++WVV++P G+ NP+KP + ELV+
Sbjct:   123 NVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLELVV 182

Query:   193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT 231
             Y SLQD QPR V+ LWKA ++EPK  Q D S+ I D +T
Sbjct:   183 YASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNST 221

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:505006458 XBAT34 "XB3 ortholog 4 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 1.8e-92, Sum P(3) = 1.8e-92
 Identities = 135/223 (60%), Positives = 169/223 (75%)

Query:     8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
             M Q QQ QSKDE+L+Q V   +V+ I++L  +GA LE +DK G+TPLI+AC +  L +VA
Sbjct:     1 MGQ-QQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVA 59

Query:    68 KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             KTL+ELG+N+NAYR G  GGTPLHHAAKRGL  TV+LLLS GAN LV +DD  TAL VAR
Sbjct:    60 KTLLELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVAR 119

Query:   128 IKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLR 187
              +G+ NVVRAIESHIC F G +RE+ G S L   APQL+SRK+WVVV+P G+ NP+KPL+
Sbjct:   120 DEGYSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLK 179

Query:   188 FELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA 230
              ELV+Y S+QD QPR VI LWKA ++EPK  + D S+ I D +
Sbjct:   180 LELVLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDS 222

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2827572 AKR2B "ankyrin repeat-containing 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 42/128 (32%), Positives = 70/128 (54%)

Query:    12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
             ++ + ++ +++Q    GDV+ ++A  + G + +  D EG+T L  AC   G +  A+ L+
Sbjct:   215 EEGEEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGEVRCAQVLL 273

Query:    72 ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
             + GAN NA        TPLH+AA  G +  V LLL  GA    +N D    + VAR+   
Sbjct:   274 DAGANANAIDKNKN--TPLHYAAGYGRKECVSLLLENGAAVTQQNMDNKNPIDVARLNNQ 331

Query:   132 INVVRAIE 139
             ++VV+ +E
Sbjct:   332 LDVVKLLE 339

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030916-4 ankrd6b "ankyrin repeat domain 6b" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 56/202 (27%), Positives = 94/202 (46%)

Query:    21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
             L++  + G+ D I AL  +G +L+  DK+G T L  A    G     K L++ GAN++A 
Sbjct:    81 LHRAAVVGNTDVISALVQEGCALDRQDKDGNTALHEAAWH-GFSQTVKLLVKAGANVHAK 139

Query:    81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G   T LH A + G   + R+LL  G+    +N    T L V+    H++V+RA+  
Sbjct:   140 NKAGN--TALHLACQNGHVQSCRVLLLGGSRPDSKNSVGDTCLHVSARYNHVSVIRALLG 197

Query:   141 HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ 200
              IC      R   G + L  +A  L  RK   +++  G  +  K    E  +  + ++  
Sbjct:   198 AICSVTD--RNHTGDTALH-IAASLNHRKTVRMLLEAGADSRIKNNTGETALDQARENNS 254

Query:   201 PRAVIALWKAKID-EPKFHQPD 221
             P   + L KA  + + + H+ +
Sbjct:   255 PEVALLLTKAPAELQSRTHREE 276

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0030877 "beta-catenin destruction complex" evidence=NAS

GO:0048264 "determination of ventral identity" evidence=IMP

GO:0046330 "positive regulation of JNK cascade" evidence=IDA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IGI

GO:0008013 "beta-catenin binding" evidence=NAS

GO:0001702 "gastrulation with mouth forming second" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

UNIPROTKB|Q5ZIZ1 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 35/100 (35%), Positives = 53/100 (53%)

Query:    27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
             +GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN  +P   G
Sbjct:    50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENGANIN--QPDNEG 106

Query:    87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
               PLH AA  G       L+S GA+    N +  T L +A
Sbjct:   107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

GO:0000776 "kinetochore" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

UNIPROTKB|E1C4S8 ANKRD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 43/123 (34%), Positives = 65/123 (52%)

Query:    21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
             L++  + G+ D I +L  +G +L+  DK+G T L  AC   G    AK L++ GAN+ A 
Sbjct:    79 LHRAAVVGNTDVIASLIQEGCALDRQDKDGNTALHEACWH-GFSQSAKVLVKAGANVLAK 137

Query:    81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G   TPLH A +     + R+LL  G+ A ++N+   T L VA    H+ +VR + S
Sbjct:   138 NKAGN--TPLHLACQNSHSQSTRVLLLGGSRADLKNNAGDTCLHVAARYNHLPIVRVLLS 195

Query:   141 HIC 143
               C
Sbjct:   196 AFC 198

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

TAIR|locus:4515102961 APD4 "ABERRANT POLLEN DEVELOPMENT 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 35/90 (38%), Positives = 50/90 (55%)

Query:   420 GEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAG 479
             GEG   + S ++SV    L    D    ++V +  + S C IC++AP +   +PCGH   
Sbjct:   313 GEG---FLSEDDSVRTCLLADKGDNDCCNDV-EASNKSLCAICFDAPRDCCFLPCGHCVS 368

Query:   480 CMSCLSEIKAKKGDCPVCRTKINQVIRLYT 509
             C  C ++IK  KG CP+CR KI  V R+YT
Sbjct:   369 CYQCGTKIKRTKGRCPICRKKIMHVKRIYT 398

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IMP

MGI|MGI:2145661 Ankrd28 "ankyrin repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 42/116 (36%), Positives = 58/116 (50%)

Query:    17 KDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
             KD     W    G ++ ++ L S GA +   DK+  TPL  A   SG+I+V K L++LG 
Sbjct:   172 KDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAA-SSGMISVVKYLLDLGV 230

Query:    76 NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
             ++N   P   G TPLH A   G +  V  L+ CGAN   +N+   T L  A    H
Sbjct:   231 DMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTH 284

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 164 (62.8 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 44/114 (38%), Positives = 58/114 (50%)

Query:    28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             G    +R L + GA  +     G+TPL  A  D G  +V +  +E GA  +     G GG
Sbjct:   684 GHESVVRLLLTHGAQADSKANWGQTPLSRAAFD-GHESVVRLFLEHGAQADC--KDGDGG 740

Query:    88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             TPL  AA  G E  VRLLL  GA A  ++DDC T L  A   G+ +VV+ +  H
Sbjct:   741 TPLSSAAATGHESVVRLLLKHGAQADSKDDDCRTPLSYAASNGYESVVKLLLEH 794

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BJ12 ASB13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 40/115 (34%), Positives = 59/115 (51%)

Query:    26 IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
             + G V  ++ L + GA ++  + +G TPL  AC  SG +   K L+  GA +N   P   
Sbjct:    61 LQGQVQCVQLLLAAGAQVDARNIDGSTPLCDACA-SGSVECVKLLLSYGAKVN---PPLY 116

Query:    86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH--TALGVARIKGHINVVRAI 138
               +PLH A   G    VRLL+  GAN  +   DCH  T L VA  + H++ V+ +
Sbjct:   117 TASPLHEACMSGSSECVRLLIDVGAN--LEAHDCHFGTPLHVACAREHLDCVKVL 169

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XI08	XB34_ORYSJ	6, ., 3, ., 2, ., -	0.4483	0.9117	0.9064	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	510
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-14
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	1e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-06
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	5e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-04
smart00248	30	smart00248, ANK, ankyrin repeats	7e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
              G ++ ++ L   GA +   D +G+TPL +A   +G + + K L+E GA++NA    G
Sbjct: 15  ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAK-NGHLEIVKLLLEKGADVNARDKDG 73

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
              TPLH AA+ G    V+LLL  GA+   R+ D  T L +A   GH+ VV+ +
Sbjct: 74  N--TPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           D++G+TPL +A   +G + V K L+E GA++NA    GR  TPLH AAK G    V+LLL
Sbjct: 4   DEDGRTPLHLAAS-NGHLEVVKLLLENGADVNAKDNDGR--TPLHLAAKNGHLEIVKLLL 60

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+   R+ D +T L +A   G+++VV+ +  H
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
              G+++ ++ L  +GA +   D +  T L +A   +G + + K L+E GA++NA    G
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDTD--TALHLAAR-NGNLEIVKLLLEHGADVNAKDKDG 61

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRN 116
              T LH AA+ G    V+LLL  GA+  +++
Sbjct: 62  N--TALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.8 bits (169), Expect = 1e-14
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 54  LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           L +A   +G + + K L+E GA++N     G   T LH AA+ G    V+LLL  GA+  
Sbjct: 1   LHLAAK-NGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 114 VRNDDCHTALGVARIKGHINVVRAIESH 141
            ++ D +TAL +A   G++ +V+ +  H
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.2 bits (167), Expect = 7e-14
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
              G ++ ++ L  +GA +   DK+G TPL +A   +G ++V K L++ GA++NA     
Sbjct: 48  AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR-NGNLDVVKLLLKHGADVNA--RDK 104

Query: 85  RGGTPLHHAAKRGLEPTVRLLL 106
            G TPLH AAK G    V+LLL
Sbjct: 105 DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 504
           CVIC E P     +PCGH+  C  C   +++KK  CP+CR  I  V
Sbjct: 5   CVICLERPRNVVFLPCGHLCLCEECAKRLRSKK-KCPICRQPIESV 49

Length = 49

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.5 bits (164), Expect = 9e-13
 Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 5/142 (3%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM----DS 61
              +   +       L+     GD   ++ L + GA +   D +G TPL +A +      
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE 121

Query: 62  GLINVAKTLIELGANI-NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           G I VAK L+E GA++         G TPLH AA  G    V LLL  GA+   RN    
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181

Query: 121 TALGVARIKGHINVVRAIESHI 142
           TAL  A   G I +V+ +    
Sbjct: 182 TALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 6e-09
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
            D  L+     G+++ ++ L   GA +   DK+G T L +A   +G + + K L+E GA
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAAR-NGNLEIVKLLLEHGA 85

Query: 76 NINA 79
          +IN 
Sbjct: 86 DINL 89

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
             D +R L   GA +   ++ G TPL +   ++  ++V K LI+ GA++NA      G T
Sbjct: 62  VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA--KDKVGRT 119

Query: 89  PLH-HAA-KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHIC 143
           PLH + +        +RLLL  GA+    +    T L V  +K     + ++R +     
Sbjct: 120 PLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL-LKSRNANVELLRLLIDAGA 178

Query: 144 YFCGWLREFYGPSFLEALA 162
                  +    S L    
Sbjct: 179 DVYA--VDDRFRSLLHHHL 195

Length = 471

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 455 SSSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 499
               C IC +   +     PCGH+  C  C+     KK  CP+CRT
Sbjct: 1   EELECPICLDLLRDPVVLTPCGHVF-CRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 24/138 (17%)

Query: 16  SKDELLYQWVIAGD---VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAK---T 69
             +  LY +++      V+ +R L + GA + +  + GKTPL +  +      V      
Sbjct: 10  IMEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHL-YLHYSSEKVKDIVRL 68

Query: 70  LIELGANINAYRPGGRGGTPLH----HAAKRGLEPTVRLLLSCGANALVRNDDC-----H 120
           L+E GA++NA  P   G TPLH    +A        ++LL+  GA+   + D       H
Sbjct: 69  LLEAGADVNA--PERCGFTPLHLYLYNATT---LDVIKLLIKAGADVNAK-DKVGRTPLH 122

Query: 121 TALGVARIKGHINVVRAI 138
             L    I  +  V+R +
Sbjct: 123 VYLSGFNI--NPKVIRLL 138

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 70  LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           L+E G  I+     G G TPLH AAK G    V+ LL  G +  +R+ D  TAL +A
Sbjct: 1   LLEHG-PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L Q   +GD    R L + GA     D +G+TPL +AC + G + V + L+E GA+    
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLL 144

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
              G+  TPL  A + G    V+LL   
Sbjct: 145 DKDGK--TPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 458 SCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAKKGDCPVCRTK 500
            C IC +    G  V   PCGH+     CL +       CP+CR  
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVF-HKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 64  INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
            N    L+  G  IN       G TPLH+A        V+ LL  GAN  + N    T L
Sbjct: 172 KNRVNYLLSYGVPINI--KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL 229

Query: 124 GVARIKGHINVVRAIESH 141
            +A +  +  + + + ++
Sbjct: 230 HIAILNNNKEIFKLLLNN 247

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 12  QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           +  + K   L+  +  GD+++I+ L   GA +   D  G  P+ +A +     ++ K L+
Sbjct: 120 KDAELK-TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA-IKHNFFDIIKLLL 177

Query: 72  ELGA--NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128
           E GA  N+        G +PLH+AA+ G    ++LL+  G + + +  +  T L  A I
Sbjct: 178 EKGAYANVKDNN----GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII 232

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           T L  A + SG + + K L+E G +IN  R    G T LH AA+ G    ++LLL
Sbjct: 3   TALHKAAI-SGRLELVKYLLEKGVDIN--RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           G T LH AA  G    V+ LL  G +    ++D +TAL +A   G++ V++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 459 CVICWEAPVEGACV-PCGHMAGCMSCLSE-IKAKKGDCPVCRTKI 501
           C IC E   E   + PCGH+  C SC+ + +K+ K  CP+CRT I
Sbjct: 2   CPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRND 117
           G TPLH AA+ G    V+LLL  GA+   R+ 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 29  DVDA---IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           D++A   +  L S G  +   D  G TPL  A   +      K L++LGAN N       
Sbjct: 168 DINAKNRVNYLLSYGVPINIKDVYGFTPLHYAV-YNNNPEFVKYLLDLGANPNLV--NKY 224

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANA 112
           G TPLH A     +   +LLL+ G + 
Sbjct: 225 GDTPLHIAILNNNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 27  AGDVDAIRALRSQGASLE---WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83
            G+++  + L   GA L+     D++G TPL  A + +G  ++ + L+E GA+ N+    
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL-NGDADIVELLLEAGADPNSRNS- 178

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
             G T L  AAK G    V+LLL  G +  +   +
Sbjct: 179 -YGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  V+ GD+  I  L    A L+  D  G TPLI+A M  G I + K L++ GANI+ +
Sbjct: 139 LHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA-MAKGDIAICKMLLDSGANIDYF 197

Query: 81  RPGGRGG--TPLHHAAKRGLEPTVRLLLSCGANA----LVRNDDCHT 121
              G+ G    L +A +      VRL +  GA+     ++  ++C  
Sbjct: 198 ---GKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTI 241

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
           D + IR L   GA +   D+   TPL  A       ++  TL+ELGAN+NA     +  T
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK--T 377

Query: 89  PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           P+H+AA R     +  LL  GA+    +    TAL  A
Sbjct: 378 PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           +A+ L+E GA++NA        TP+H+AA+RG    V LLLS GA+  +   D  + L  
Sbjct: 160 IAEMLLEGGADVNAKDIYCI--TPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217

Query: 126 ARIKGHINVVRAI 138
           A    +I+ ++AI
Sbjct: 218 AVDSKNIDTIKAI 230

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 18  DELLYQWVIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGAN 76
           D+     +I  + +  + L S GA +   D+  G T L  A  ++    + + L+  GAN
Sbjct: 137 DKKSKDDII--EAEITKLLLSYGADINMKDRHKGNTALHYAT-ENKDQRLTELLLSYGAN 193

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +N   P     +PLHHA K   +P V +LL  GA+   R+   +T L       HI+V  
Sbjct: 194 VNI--PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPL-------HISVGY 244

Query: 137 AIESHI 142
             +  I
Sbjct: 245 CKDYDI 250

Length = 477

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 459 CVICWEAPVEGACVPCGHMAGCMSCL--SEIKAKKGDCPVCRTK 500
           C +C E P   +C PCGH+  C+SCL  S  K K   CP+CR K
Sbjct: 218 CFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAK 260

Length = 271

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 49 EGKTPLIVACMDSGLINVAKTLIELGANINA 79
          +G TPL +A   +G + V K L+E GA++NA
Sbjct: 1  DGNTPLHLAAR-NGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 59  MDSGLINVAKT----LIE--LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANA 112
           M S L+ VA T    L+E  L A ++      +G TPLH AA +G E  V +LL    N 
Sbjct: 525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV 584

Query: 113 LVRNDDCHTALGVARIKGHINVVR 136
            +R+ + +TAL  A    H  + R
Sbjct: 585 HIRDANGNTALWNAISAKHHKIFR 608

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGL--INVAKTLIELGANINAYRPGGRGGTPL 90
           +R L   G      D  G TPL      S      V   L+  G +INA      G TPL
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP-LLIAGISINA--RNRYGQTPL 261

Query: 91  HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 137
           H+AA        R L++ GA+    + D +T L +     +   VRA
Sbjct: 262 HYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRA 308

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPG 83
            +    + ++ L   GA++   D  G TPL+ A    S   ++ + L++ GAN+N     
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS- 139

Query: 84  GRGGTPLHHAAKRGLE--PTVRLLLSCGAN 111
             G   LH   +        ++LL+  G +
Sbjct: 140 -DGENLLHLYLESNKIDLKILKLLIDKGVD 168

Length = 422

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 49 EGKTPLIVACMDSGLINVAKTLIELGANINA 79
          +G+TPL +A   +G + V K L++ GA+INA
Sbjct: 1  DGRTPLHLAAE-NGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           A+ L+  GA+ N     GR  TPLH A   G    VR+LL  GA+  + + D  T L +A
Sbjct: 98  ARILLTGGADPNCRDYDGR--TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Query: 127 RIKGHINVVRAIESH-ICYF----CGWLREFYGPSFLEALAPQLMS 167
              G   VV+ +  H  C+F          F G       +P    
Sbjct: 156 EENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISSH 201

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 25 VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           I+G ++ ++ L  +G  +   D++G T L +A   +G + V K L+
Sbjct: 9  AISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE-NGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           +  +V  I  L   GA +E + ++  T L  A   +      KTLI+ GAN+N+      
Sbjct: 384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS--KNKD 441

Query: 86  GGTPLHHAAKRGLEPTV-RLLLSCGAN 111
             TPLH+A K+  +  V  +LL  GA+
Sbjct: 442 LSTPLHYACKKNCKLDVIEMLLDNGAD 468

Length = 682

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 445 VSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA--KKGDCPVCRTKIN 502
            ++S    D  + +C IC  +    A  PCGH   C +C   ++A   +  CP+CRT+  
Sbjct: 50  TTSSADDTDEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETE 108

Query: 503 QVI 505
            V+
Sbjct: 109 AVV 111

Length = 493

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGAN 111
           G TPLH AA+ G    V+LLL  GA+
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	510
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	99.98
PHA02874	434	ankyrin repeat protein; Provisional	99.98
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
PHA02917	661	ankyrin-like protein; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0514	452	consensus Ankyrin repeat protein [General function	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PHA02792	631	ankyrin-like protein; Provisional	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02792	631	ankyrin-like protein; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.76
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.58
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.39
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.31
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	99.14
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	99.13
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.93
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.92
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.9
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.9
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.89
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.87
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.82
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.81
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.79
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.78
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.78
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.77
PHA02929	238	N1R/p28-like protein; Provisional	98.76
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.75
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.74
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.74
PF13606	30	Ank_3: Ankyrin repeat	98.71
PF13606	30	Ank_3: Ankyrin repeat	98.7
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.68
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.67
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.65
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.64
KOG0522	560	consensus Ankyrin repeat protein [General function	98.59
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.59
KOG0522	560	consensus Ankyrin repeat protein [General function	98.57
PHA02926	242	zinc finger-like protein; Provisional	98.52
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.49
PF14634	44	zf-RING_5: zinc-RING finger domain	98.44
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.44
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.41
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.4
KOG2384	223	consensus Major histocompatibility complex protein	98.38
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.38
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.36
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.33
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.33
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.31
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.29
KOG2384	223	consensus Major histocompatibility complex protein	98.29
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.27
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.23
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.19
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.17
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.16
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.09
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.08
KOG0511	516	consensus Ankyrin repeat protein [General function	98.07
KOG0511	516	consensus Ankyrin repeat protein [General function	98.06
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.05
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	97.95
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.93
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.93
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.84
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.83
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.68
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.55
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.47
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.4
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.39
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.34
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.25
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.21
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.17
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.07
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.04
KOG2505	591	consensus Ankyrin repeat protein [General function	96.87
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.82
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.77
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.72
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.7
COG5152	259	Uncharacterized conserved protein, contains RING a	96.58
KOG2505	591	consensus Ankyrin repeat protein [General function	96.46
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	96.41
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.37
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.25
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.18
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.07
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	95.92
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.86
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.86
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.8
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.66
PF04641	260	Rtf2: Rtf2 RING-finger	95.4
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	95.39
KOG3002	299	consensus Zn finger protein [General function pred	95.35
KOG0297	391	consensus TNF receptor-associated factor [Signal t	95.08
KOG2660	331	consensus Locus-specific chromosome binding protei	94.64
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.61
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.6
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.57
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	94.17
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.12
KOG1001	674	consensus Helicase-like transcription factor HLTF/	94.06
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.76
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.67
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.6
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	93.59
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	93.34
COG5219	1525	Uncharacterized conserved protein, contains RING Z	93.24
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	92.6
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	92.52
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	92.02
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	91.65
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	91.13
KOG2113	394	consensus Predicted RNA binding protein, contains	89.74
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.97
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	88.94
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	88.75
PHA02825	162	LAP/PHD finger-like protein; Provisional	87.59
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	87.58
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	87.41
PHA02862	156	5L protein; Provisional	87.26
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	86.86
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	86.29
COG5222	427	Uncharacterized conserved protein, contains RING Z	86.19
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	86.04
PHA03096	284	p28-like protein; Provisional	85.7
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	82.24
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	81.25
KOG4445	368	consensus Uncharacterized conserved protein, conta	80.99
KOG2113	394	consensus Predicted RNA binding protein, contains	80.14

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.2e-37  Score=258.08  Aligned_cols=172  Identities=26%  Similarity=0.250  Sum_probs=163.3

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLH   91 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~TpLh   91 (510)
                      |.+|+|||||||..|+.++|++|++ .+..+|.+|..|+||||+||.. |+.++|+.|+.. |+|+|+.  +..|.|+||
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~-g~~evVk~Ll~r~~advna~--tn~G~T~LH  111 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN-GNDEVVKELLNRSGADVNAT--TNGGQTCLH  111 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc-CcHHHHHHHhcCCCCCccee--cCCCcceeh
Confidence            4599999999999999999999995 6788899999999999999997 899999999988 9999999  899999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHH
Q 010439           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (510)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~  171 (510)
                      ||+..|..+|+++|+++|+.++++|..|.||||-|+..|..+++++|+..|+.+|  .+|+.|+|||| .|...++.+..
T Consensus       112 yAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n--~qDk~G~TpL~-~al~e~~~d~a  188 (226)
T KOG4412|consen  112 YAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN--TQDKYGFTPLH-HALAEGHPDVA  188 (226)
T ss_pred             hhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC--cccccCccHHH-HHHhccCchHH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999 88888999999


Q ss_pred             HHHhhCCCCCCCCCccccccc
Q 010439          172 VVVIPCGTANPSKPLRFELVI  192 (510)
Q Consensus       172 ~~Ll~~ga~~~~~~~~~~~~l  192 (510)
                      .+|+++|++.+..|.++ +++
T Consensus       189 ~lLV~~gAd~~~edke~-t~~  208 (226)
T KOG4412|consen  189 VLLVRAGADTDREDKEG-TAL  208 (226)
T ss_pred             HHHHHhccceeeccccC-chH
Confidence            99999999999988766 553

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-34  Score=241.77  Aligned_cols=206  Identities=21%  Similarity=0.223  Sum_probs=184.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCC-CCcccCC-CCChHHHHHHHhCCcHHHHHHHH-HcCCCccccCCCCCCChHHHHH
Q 010439           17 KDELLYQWVIAGDVDAIRALRSQGA-SLEWMDK-EGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        17 g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~-~g~TpL~~A~~~~~~~~~v~~Ll-~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      +.++.+.+++.....-|+.|++... .++.++. +|+||||+||.. |+.+++.+|+ +.+..+|.+  |..||||||+|
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~-g~~eiv~fLlsq~nv~~ddk--DdaGWtPlhia   79 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSF-GHVEIVYFLLSQPNVKPDDK--DDAGWTPLHIA   79 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeec-CchhHHHHHHhcCCCCCCCc--cccCCchhhhh
Confidence            4678888888888889999998766 6788776 999999999998 9999999999 556777766  89999999999


Q ss_pred             HHcCCHHHHHHHHHC-CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439           94 AKRGLEPTVRLLLSC-GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~-gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~  172 (510)
                      +..|+.++|+.|+.+ |+|+|..++.|.|+||||+.+|+.+|+++|+++|+.++  ++|..|.|||| -|+..|..++++
T Consensus        80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~--~kD~~~qtplH-RAAavGklkvie  156 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR--IKDKQGQTPLH-RAAAVGKLKVIE  156 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc--ccccccCchhH-HHHhccchhhHH
Confidence            999999999999998 99999999999999999999999999999999999999  99999999999 899999999999


Q ss_pred             HHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehh
Q 010439          173 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (510)
Q Consensus       173 ~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~  239 (510)
                      +|+..|+.+|.+|..|.+|++.+.-++++.....|...        +++  +.+.|+.| |++..+.
T Consensus       157 ~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~--------gAd--~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  157 YLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRA--------GAD--TDREDKEG-TALRIAC  212 (226)
T ss_pred             HHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHh--------ccc--eeeccccC-chHHHHH
Confidence            99999999999999999999999888887776654443        445  78888877 8876654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-33  Score=269.43  Aligned_cols=205  Identities=15%  Similarity=0.143  Sum_probs=182.2

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHH
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpL   90 (510)
                      +.+|.+|+||||+|+..|+.++|++|+++|++++..+  |.||||+|+.. |+.+++++|+++|++++.+  |..|+|||
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~-g~~eiV~lLL~~Gadvn~~--d~~G~TpL   98 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGMDDSQF--DDKGNTAL   98 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHH
Confidence            4678999999999999999999999999999998764  79999999997 9999999999999999998  89999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCccCCCCCC-cHHHHHHHcCCHHHHHHHHhccccccccccc-cCCCCHHHHHhhhcCCH
Q 010439           91 HHAAKRGLEPTVRLLLSCGANALVRNDDCH-TALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQLMSR  168 (510)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~-TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~t~L~~~A~~~~~~  168 (510)
                      |+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.++|++|++++.+..    | ..|.|||| +|+..|+.
T Consensus        99 h~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~----d~~~g~TpLh-~Aa~~g~~  173 (284)
T PHA02791         99 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCIH-ITIKNGHV  173 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc----ccccCccHHH-HHHHcCCH
Confidence            999999999999999999999999999885 89999999999999999999976542    3 35899999 99999999


Q ss_pred             HHHHHHhhCCCCCCCCCcccccc-ccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceee
Q 010439          169 KIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYK  236 (510)
Q Consensus       169 ~~~~~Ll~~ga~~~~~~~~~~~~-l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~  236 (510)
                      +++++|+++|++++.++..+.++ ++.++..++...+..|+.        .|++  ++.+|.. .++|.
T Consensus       174 eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~--------~Ga~--in~~~~~-~~~l~  231 (284)
T PHA02791        174 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFK--------YDIN--IYSVNLE-NVLLD  231 (284)
T ss_pred             HHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH--------CCCC--CccCccc-CccCC
Confidence            99999999999999999888877 899999999777765443        3556  6777773 35553

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2.1e-31  Score=279.19  Aligned_cols=209  Identities=21%  Similarity=0.189  Sum_probs=185.7

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCc------------------------------
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL------------------------------   63 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~------------------------------   63 (510)
                      +..+.||||+|+..|+.++|++|+++|+++|.+|..|.||||+||.. |+                              
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~  112 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKE-PNKLGMKEMIRSINKCSVFYTLVAIKDAFNNR  112 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-ccHhHHHHHHHHHhccccccchhhHHHHHHcC
Confidence            45688999999999999999999999999999999999999999975 32                              


Q ss_pred             ----------------------------------HHHHHHHHHcCCCccccCCCCC-CChHHHHHHHcCCHHHHHHHHHC
Q 010439           64 ----------------------------------INVAKTLIELGANINAYRPGGR-GGTPLHHAAKRGLEPTVRLLLSC  108 (510)
Q Consensus        64 ----------------------------------~~~v~~Ll~~ga~~n~~~~d~~-g~TpLh~A~~~g~~~~v~~Ll~~  108 (510)
                                                        .+++++|+++|++++..  +.. |+||||+|+..|+.+++++|+++
T Consensus       113 ~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~--~~~~g~tpLh~A~~~~~~~iv~~Ll~~  190 (477)
T PHA02878        113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMK--DRHKGNTALHYATENKDQRLTELLLSY  190 (477)
T ss_pred             CHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCcc--CCCCCCCHHHHHHhCCCHHHHHHHHHC
Confidence                                              23778888899999998  777 99999999999999999999999


Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc-CCHHHHHHHhhCCCCCCCCCc-
Q 010439          109 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL-MSRKIWVVVIPCGTANPSKPL-  186 (510)
Q Consensus       109 gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~-~~~~~~~~Ll~~ga~~~~~~~-  186 (510)
                      |++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+.. ++.+++++|+++|++++.++. 
T Consensus       191 gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in--~~d~~g~TpLh-~A~~~~~~~~iv~~Ll~~gadvn~~~~~  267 (477)
T PHA02878        191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD--ARDKCGNTPLH-ISVGYCKDYDILKLLLEHGVDVNAKSYI  267 (477)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHhcCCHHHHHHHHHcCCCCCccCCC
Confidence            99999999999999999999999999999999999999  89999999999 78764 789999999999999998875 


Q ss_pred             cccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439          187 RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (510)
Q Consensus       187 ~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~  240 (510)
                      .+.+|++.+..  ....+..        +...+++  +++.|..|.|||++|+.
T Consensus       268 ~g~TpLh~A~~--~~~~v~~--------Ll~~gad--in~~d~~g~TpL~~A~~  309 (477)
T PHA02878        268 LGLTALHSSIK--SERKLKL--------LLEYGAD--INSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CCCCHHHHHcc--CHHHHHH--------HHHCCCC--CCCcCCCCCCHHHHHHH
Confidence            78999999943  3333332        2345667  88899999999999985

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.98  E-value=3.4e-31  Score=274.45  Aligned_cols=215  Identities=17%  Similarity=0.192  Sum_probs=192.8

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC-------------
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-------------   76 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~-------------   76 (510)
                      .+..+..|.||||+|+..|+.++|++|+++|+++|..+..|.||||+|+.. |+.+++++|+++|++             
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  106 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI-GAHDIIKLLIDNGVDTSILPIPCIEKDM  106 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcchhccCCHHH
Confidence            456678899999999999999999999999999999999999999999997 999999999887654             


Q ss_pred             ----------ccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439           77 ----------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (510)
Q Consensus        77 ----------~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  146 (510)
                                ++.+  +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       107 i~~ll~~g~d~n~~--~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        107 IKTILDCGIDVNIK--DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             HHHHHHCcCCCCCC--CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence                      5555  7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEE
Q 010439          147 GWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTI  226 (510)
Q Consensus       147 ~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~  226 (510)
                        .++..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...... .+..+.         .+.+  ++.
T Consensus       185 --~~~~~g~tpL~-~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~-~i~~Ll---------~~~~--in~  249 (434)
T PHA02874        185 --VKDNNGESPLH-NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIELLI---------NNAS--IND  249 (434)
T ss_pred             --CCCCCCCCHHH-HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChH-HHHHHH---------cCCC--CCC
Confidence              89999999999 99999999999999999999999999999999999876542 222111         2344  677


Q ss_pred             ecCCCcceeeehhcCC
Q 010439          227 YDQATKIRYKFASANE  242 (510)
Q Consensus       227 ~d~~~~t~l~~a~~~~  242 (510)
                      .|..|.||||+|+...
T Consensus       250 ~d~~G~TpLh~A~~~~  265 (434)
T PHA02874        250 QDIDGSTPLHHAINPP  265 (434)
T ss_pred             cCCCCCCHHHHHHhcC
Confidence            8999999999999654

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.6e-31  Score=275.45  Aligned_cols=193  Identities=16%  Similarity=0.130  Sum_probs=174.4

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhC-CcHHHHHHHHHcCCCccccCCCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANINAYRPGG   84 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~-~~~~~v~~Ll~~ga~~n~~~~d~   84 (510)
                      .++++|.+|.+|.||||+|+..|+.++|++||++|+++|.+|..|.||||+|+..+ +..+++++|+++|+++|... |.
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~-d~  139 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSV-DE  139 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccccc-CC
Confidence            46788999999999999999999999999999999999999999999999998752 24899999999999999632 78


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCC--HHHHHHHHhccccccccccccCCCCHHHHHh
Q 010439           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH--INVVRAIESHICYFCGWLREFYGPSFLEALA  162 (510)
Q Consensus        85 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~--~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A  162 (510)
                      .|.|||| |+..++.+++++|+++|++++.+|..|+||||+|+..++  .+++++|+++|++++  .+|.+|.|||| +|
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin--~~d~~G~TpLH-~A  215 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS--KPDHDGNTPLH-IV  215 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HH
Confidence            9999997 667799999999999999999999999999999987654  689999999999999  89999999999 88


Q ss_pred             hhcC--CHHHHHHHhhCCCCCCCCCccccccccccccccChHHH
Q 010439          163 PQLM--SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  204 (510)
Q Consensus       163 ~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i  204 (510)
                      +..+  +.+++++|+. |++++.++..+.+|++.++...+...+
T Consensus       216 a~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~  258 (446)
T PHA02946        216 CSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHL  258 (446)
T ss_pred             HHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHH
Confidence            8875  7899999885 899999999999999999988775433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=1.9e-31  Score=283.27  Aligned_cols=180  Identities=16%  Similarity=0.133  Sum_probs=156.7

Q ss_pred             cChhhh-cCCchHHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCc--HHHHHHHHHcCCCccccCC
Q 010439            8 MNQHQQ-RQSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL--INVAKTLIELGANINAYRP   82 (510)
Q Consensus         8 ~~~~~~-~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~--~~~v~~Ll~~ga~~n~~~~   82 (510)
                      +++|.+ +..|.||||+|+.  .++.++|++|+++|+++|.+|..|.||||+|+.. |+  .++|++|+++|||+|.+  
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~-g~~~~eIVklLLe~GADVN~k--  243 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLIT-GNVCASVIKKIIELGGDMDMK--  243 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCCCHHHHHHHHHcCCCCCCC--
Confidence            677777 8889999998865  4678999999999999999999999999999987 64  58999999999999988  


Q ss_pred             CCCCChHHHHH-------------------------------------HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHH
Q 010439           83 GGRGGTPLHHA-------------------------------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGV  125 (510)
Q Consensus        83 d~~g~TpLh~A-------------------------------------~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~  125 (510)
                      |..|+||||+|                                     +..|+.+++++|+++|++++.+|..|+||||+
T Consensus       244 D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~  323 (764)
T PHA02716        244 CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQ  323 (764)
T ss_pred             CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHH
Confidence            88999999864                                     45699999999999999999999999999998


Q ss_pred             HHH--cCCHHHHHHHHhccccccccccccCCCCHHHHHhhh--------------cCCHHHHHHHhhCCCCCCCCCcccc
Q 010439          126 ARI--KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ--------------LMSRKIWVVVIPCGTANPSKPLRFE  189 (510)
Q Consensus       126 A~~--~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~--------------~~~~~~~~~Ll~~ga~~~~~~~~~~  189 (510)
                      |+.  .++.+++++|+++|++++  .+|..|.|||| +|+.              .++.+++++|+++|++++.++..|.
T Consensus       324 Aaa~~~~~~eIVklLLe~GADIN--~kD~~G~TPLH-~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~  400 (764)
T PHA02716        324 YILRHNISTDIIKLLHEYGNDLN--EPDNIGNTVLH-TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGY  400 (764)
T ss_pred             HHHHhCCCchHHHHHHHcCCCCc--cCCCCCCCHHH-HHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCC
Confidence            765  457899999999999998  88999999999 6643              3678999999999999999999999


Q ss_pred             cccc
Q 010439          190 LVIY  193 (510)
Q Consensus       190 ~~l~  193 (510)
                      +|++
T Consensus       401 TPLh  404 (764)
T PHA02716        401 TPLT  404 (764)
T ss_pred             ChHH
Confidence            9987

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.4e-31  Score=252.55  Aligned_cols=164  Identities=16%  Similarity=0.103  Sum_probs=153.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCC-hHHHHHH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG-TPLHHAA   94 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~-TpLh~A~   94 (510)
                      +|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  +..|+ ||||+|+
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~-g~~eivk~Ll~~gadin~~--~~~g~~TpL~~Aa  136 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAV  136 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcCcc--CCCCCcHHHHHHH
Confidence            478999999999999999999999999999999999999999998 9999999999999999988  77775 9999999


Q ss_pred             HcCCHHHHHHHHHCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCH-HHHHhhhcCCHHHHH
Q 010439           95 KRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQLMSRKIWV  172 (510)
Q Consensus        95 ~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~-L~~~A~~~~~~~~~~  172 (510)
                      ..|+.++|++|++++.+.  .| ..|.||||+|+.+|+.+++++|+++|++++  .+|..|.|| || +|+..++.++++
T Consensus       137 ~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n--~~d~~g~t~~L~-~Aa~~~~~e~v~  211 (284)
T PHA02791        137 MLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNKDLEMLQ  211 (284)
T ss_pred             HcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC--cccCCCCChHHH-HHHHcCCHHHHH
Confidence            999999999999987543  33 358999999999999999999999999999  899999987 99 999999999999


Q ss_pred             HHhhCCCCCCCCCcc
Q 010439          173 VVIPCGTANPSKPLR  187 (510)
Q Consensus       173 ~Ll~~ga~~~~~~~~  187 (510)
                      +|+++|++++.++..
T Consensus       212 lLl~~Ga~in~~~~~  226 (284)
T PHA02791        212 ALFKYDINIYSVNLE  226 (284)
T ss_pred             HHHHCCCCCccCccc
Confidence            999999999999864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=7.6e-31  Score=278.60  Aligned_cols=174  Identities=18%  Similarity=0.183  Sum_probs=154.1

Q ss_pred             cccChhhhcCCchHHHHHHHHcCC--HHHHHHHHHcCCCCcccCCCCChHHHHHH-------------------------
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGD--VDAIRALRSQGASLEWMDKEGKTPLIVAC-------------------------   58 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~-------------------------   58 (510)
                      ++++++.+|..|.||||+|+..|+  .++|++||++|+++|.+|..|+||||+|+                         
T Consensus       201 ~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~  280 (764)
T PHA02716        201 NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKN  280 (764)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccccc
Confidence            467889999999999999999995  59999999999999999999999999763                         


Q ss_pred             ------------HhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH--cCCHHHHHHHHHCCCCCccCCCCCCcHHH
Q 010439           59 ------------MDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK--RGLEPTVRLLLSCGANALVRNDDCHTALG  124 (510)
Q Consensus        59 ------------~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~gad~~~~d~~g~TpL~  124 (510)
                                  .. |+.+++++|+++|++++.+  |..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||
T Consensus       281 ~~~~L~~~i~AA~~-g~leiVklLLe~GAdIN~k--D~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH  357 (764)
T PHA02716        281 IPMILHSYITLARN-IDISVVYSFLQPGVKLHYK--DSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH  357 (764)
T ss_pred             chhhhHHHHHHHHc-CCHHHHHHHHhCCCceecc--CCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHH
Confidence                        33 7789999999999999998  8999999999875  46899999999999999999999999999


Q ss_pred             HHHH--------------cCCHHHHHHHHhccccccccccccCCCCHHHHH---hhhcCCHHHHHHHhhCCCCCCCC
Q 010439          125 VARI--------------KGHINVVRAIESHICYFCGWLREFYGPSFLEAL---APQLMSRKIWVVVIPCGTANPSK  184 (510)
Q Consensus       125 ~A~~--------------~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~---A~~~~~~~~~~~Ll~~ga~~~~~  184 (510)
                      +|+.              .++.+++++|+++|++++  .+|..|.||||.+   |...++.+++++|++.|+....+
T Consensus       358 ~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn--~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~  432 (764)
T PHA02716        358 TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT--AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVK  432 (764)
T ss_pred             HHHHhhhhhccccccccccChHHHHHHHHHCCCCCC--CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhh
Confidence            9875              368999999999999999  8999999999932   23357799999999998765433

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=274.84  Aligned_cols=217  Identities=17%  Similarity=0.178  Sum_probs=130.0

Q ss_pred             ccChhhhcCCchHHHHH-----HHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHH--HhCCcHHHHHHHHHcCCCccc
Q 010439            7 SMNQHQQRQSKDELLYQ-----WVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVAC--MDSGLINVAKTLIELGANINA   79 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~-----A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~--~~~~~~~~v~~Ll~~ga~~n~   79 (510)
                      +++++..+..|.||||+     |+..|+.+++++|+++|++++..|..|.||||+|+  .. |+.+++++|+++|++++.
T Consensus        58 g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~-~~~~iv~~Ll~~g~~~~~  136 (480)
T PHA03100         58 GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKS-NSYSIVEYLLDNGANVNI  136 (480)
T ss_pred             CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhccc-ChHHHHHHHHHcCCCCCc
Confidence            34445555556666666     66666666666666666666666666666666666  54 566666666666666665


Q ss_pred             cCCCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCC---
Q 010439           80 YRPGGRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG---  154 (510)
Q Consensus        80 ~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g---  154 (510)
                      .  +..|.||||+|+..|  +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|   
T Consensus       137 ~--~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~~~  212 (480)
T PHA03100        137 K--NSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN--AGDIETLLF  212 (480)
T ss_pred             c--CCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc--CCCCCCCcH
Confidence            5  556666666666666  5666666666666666666666666666666666666666666666665  555555   


Q ss_pred             ---CCHHHHHhhhcCC--HHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecC
Q 010439          155 ---PSFLEALAPQLMS--RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ  229 (510)
Q Consensus       155 ---~t~L~~~A~~~~~--~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~  229 (510)
                         .|||| .|+..++  .+++++|+++|++++.++..+.+|++.++..++...+..++.        .+++  ++..|.
T Consensus       213 ~~~~t~l~-~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~--------~gad--~n~~d~  281 (480)
T PHA03100        213 TIFETPLH-IAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD--------LGAN--PNLVNK  281 (480)
T ss_pred             HHHHhHHH-HHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------cCCC--CCccCC
Confidence               56666 5666666  666666666666666666666666666666555444443222        2334  555666


Q ss_pred             CCcceeeehh
Q 010439          230 ATKIRYKFAS  239 (510)
Q Consensus       230 ~~~t~l~~a~  239 (510)
                      .|.||+++|.
T Consensus       282 ~g~tpl~~A~  291 (480)
T PHA03100        282 YGDTPLHIAI  291 (480)
T ss_pred             CCCcHHHHHH
Confidence            6666666666

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=5e-31  Score=264.05  Aligned_cols=209  Identities=25%  Similarity=0.242  Sum_probs=189.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHc
Q 010439           18 DELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~   96 (510)
                      ...++.|++.|+++.||.|++. |.+++..|.+|.|+||+||.+ ++++++++|+++||++|... ..-+.||||||+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN-Nrl~v~r~li~~gadvn~~g-G~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAIN-NRLDVARYLISHGADVNAIG-GVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc-CcHHHHHHHHHcCCCccccC-CCCCCCcchHHHHc
Confidence            5778999999999999999998 999999999999999999998 99999999999999999983 37789999999999


Q ss_pred             CCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhh
Q 010439           97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (510)
Q Consensus        97 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~  176 (510)
                      |+..+|++|+++|||++.+|.+|.||||+|+..|+.-+|-+|+.+|++++  .+|.+|+|||| +|+.++....+..|+.
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d--~~D~~grTpLm-wAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID--LRDNNGRTPLM-WAAYKGFALFVRRLLK  199 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC--CcCCCCCCHHH-HHHHhcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999  99999999999 9999999888999999


Q ss_pred             CCCCCCCCC-ccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439          177 CGTANPSKP-LRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (510)
Q Consensus       177 ~ga~~~~~~-~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~  241 (510)
                      .|+.+..+| ..+.+|+|+++..++...+. +       +...+++  ....|.+|+||+.+|.+.
T Consensus       200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-L-------l~~g~~~--~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  200 FGASLLLTDDNHGNTPLHWAVVGGNLTAVK-L-------LLEGGAD--LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hcccccccccccCCchHHHHHhcCCcceEe-h-------hhhcCCc--ccccccCCCCHHHHHHHh
Confidence            999999888 89999999999888855544 2       2223345  677788899999999755

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=1e-30  Score=274.22  Aligned_cols=221  Identities=18%  Similarity=0.134  Sum_probs=195.6

Q ss_pred             cccChhhhcCCchHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCC-cHHHHHHHHHcCCCccccC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGANINAYR   81 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~-~~~~v~~Ll~~ga~~n~~~   81 (510)
                      .+++++.++..|.||||+|+..|   +.++|++|+++|+++|.+|..|.||||+|+.. + +.+++++|+++|++++.+ 
T Consensus        36 ~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~-~~~~~iv~lLl~~ga~in~~-  113 (471)
T PHA03095         36 AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN-ATTLDVIKLLIKAGADVNAK-  113 (471)
T ss_pred             cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCcHHHHHHHHHcCCCCCCC-
Confidence            35778889999999999999998   99999999999999999999999999999998 6 699999999999999998 


Q ss_pred             CCCCCChHHHHHH--HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHhccccccccccccCCCCH
Q 010439           82 PGGRGGTPLHHAA--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSF  157 (510)
Q Consensus        82 ~d~~g~TpLh~A~--~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~~~d~~g~t~  157 (510)
                       |..|+||||+|+  ..++.+++++|+++|++++.+|..|.||||+|+..+  +.+++++|+++|++++  ..|..|.||
T Consensus       114 -~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~--~~d~~g~t~  190 (471)
T PHA03095        114 -DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY--AVDDRFRSL  190 (471)
T ss_pred             -CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc--ccCCCCCCH
Confidence             889999999999  567899999999999999999999999999999876  6899999999999998  679999999


Q ss_pred             HHHHhhh--cCCHHHHHHHhhCCCCCCCCCccccccccccccccChHH-HHHHHHhhcCCCCCCCCCCceEEecCCCcce
Q 010439          158 LEALAPQ--LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA-VIALWKAKIDEPKFHQPDPSLTIYDQATKIR  234 (510)
Q Consensus       158 L~~~A~~--~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~-i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~  234 (510)
                      || +++.  .+..+++++|++.|++++.++..+.+|++.++..+.... +..       .++..+.+  ++..|..|+||
T Consensus       191 Lh-~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~-------~ll~~g~d--in~~d~~g~Tp  260 (471)
T PHA03095        191 LH-HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL-------PLLIAGIS--INARNRYGQTP  260 (471)
T ss_pred             HH-HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHH-------HHHHcCCC--CCCcCCCCCCH
Confidence            99 6665  477899999999999999999999999999988766432 221       11233455  78889999999


Q ss_pred             eeehhcC
Q 010439          235 YKFASAN  241 (510)
Q Consensus       235 l~~a~~~  241 (510)
                      ||+|+..
T Consensus       261 Lh~A~~~  267 (471)
T PHA03095        261 LHYAAVF  267 (471)
T ss_pred             HHHHHHc
Confidence            9999954

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=266.19  Aligned_cols=220  Identities=17%  Similarity=0.137  Sum_probs=194.0

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g   86 (510)
                      +++++.++.+|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|++.|++.+... +..|
T Consensus        25 g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~-~~~g  102 (413)
T PHA02875         25 GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE-GDVKAVEELLDLGKFADDVF-YKDG  102 (413)
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC-CCHHHHHHHHHcCCcccccc-cCCC
Confidence            577788888999999999999999999999999999999989999999999997 99999999999998875432 6789


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~  166 (510)
                      +||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..+
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~TpL~-~A~~~g  179 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLI-IAMAKG  179 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHH-HHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999999  89999999999 999999


Q ss_pred             CHHHHHHHhhCCCCCCCCCcccc-ccccccccccChHHHHHHHHhhcCCCCCCCCCCce-EEecCCCcceeeehh
Q 010439          167 SRKIWVVVIPCGTANPSKPLRFE-LVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSL-TIYDQATKIRYKFAS  239 (510)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~-~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~-~~~d~~~~t~l~~a~  239 (510)
                      +.+++++|+++|++++..+..+. ++++.+...++...+..++..        |+++.+ ...+..+.|+++++.
T Consensus       180 ~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~--------gad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        180 DIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR--------GADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             CHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC--------CcCcchHhhcCCCchHHHHHHH
Confidence            99999999999999998887775 567768888887776655443        445332 234667788887665

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5e-30  Score=265.69  Aligned_cols=218  Identities=21%  Similarity=0.185  Sum_probs=192.2

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCC-----------------------CCcccCCCCChHHHHHHHhCCc
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-----------------------SLEWMDKEGKTPLIVACMDSGL   63 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----------------------~~~~~d~~g~TpL~~A~~~~~~   63 (510)
                      +++++..+..|.||||+|+..|+.++|++|+++|+                       +++.+|..|.||||+|+.. |+
T Consensus        58 Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~-~~  136 (434)
T PHA02874         58 GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKK-GD  136 (434)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHC-CC
Confidence            56777888899999999999999999999988764                       5677889999999999997 99


Q ss_pred             HHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccc
Q 010439           64 INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC  143 (510)
Q Consensus        64 ~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  143 (510)
                      .+++++|+++|++++.+  |..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus       137 ~~~v~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~  214 (434)
T PHA02874        137 LESIKMLFEYGADVNIE--DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN  214 (434)
T ss_pred             HHHHHHHHhCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            99999999999999998  8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccccccccccccc-ChHHHHHHHHhhcCCCCCCCCCC
Q 010439          144 YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV-QPRAVIALWKAKIDEPKFHQPDP  222 (510)
Q Consensus       144 ~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~-~~~~i~~l~~~~~~~~~~~~~~~  222 (510)
                      +++  .++..|.|||| +|+..+. +.+++|+ .|++++.++..|.+|++.++... ....+..|+        ..+++ 
T Consensus       215 ~i~--~~~~~g~TpL~-~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll--------~~gad-  280 (434)
T PHA02874        215 HIM--NKCKNGFTPLH-NAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILL--------YHKAD-  280 (434)
T ss_pred             CCc--CCCCCCCCHHH-HHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHH--------HCcCC-
Confidence            998  88999999999 8888765 5666666 68999999999999999998765 333333322        34566 


Q ss_pred             ceEEecCCCcceeeehhcCC
Q 010439          223 SLTIYDQATKIRYKFASANE  242 (510)
Q Consensus       223 ~~~~~d~~~~t~l~~a~~~~  242 (510)
                       +++.|..|+|||++|....
T Consensus       281 -~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        281 -ISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             -CCCCCCCCCCHHHHHHHhC
Confidence             7889999999999998543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.2e-30  Score=269.67  Aligned_cols=221  Identities=20%  Similarity=0.182  Sum_probs=199.9

Q ss_pred             cccChhhhcCCchHHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCChHHHHHHHh-CCcHHHHHHHHHcCCCccccCCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPG   83 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~-~~~~~~v~~Ll~~ga~~n~~~~d   83 (510)
                      .+++++.++..|.||||+|+..| ..+++++|+++|++++.+|..|+||||+|+.. .++.+++++|+++|++++..  |
T Consensus        72 ~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~--d  149 (471)
T PHA03095         72 AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL--D  149 (471)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCcc--C
Confidence            36788889999999999999999 59999999999999999999999999999942 26789999999999999998  8


Q ss_pred             CCCChHHHHHHHcC--CHHHHHHHHHCCCCCccCCCCCCcHHHHHHHc--CCHHHHHHHHhccccccccccccCCCCHHH
Q 010439           84 GRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWLREFYGPSFLE  159 (510)
Q Consensus        84 ~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~  159 (510)
                      ..|.||||+|+..+  ..+++++|+++|++++..|..|+||||+|+..  ++.+++++|+++|++++  .+|..|.||||
T Consensus       150 ~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~--~~d~~g~tpLh  227 (471)
T PHA03095        150 LYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA--ATDMLGNTPLH  227 (471)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc--ccCCCCCCHHH
Confidence            99999999999865  68999999999999999999999999999975  77899999999999999  89999999999


Q ss_pred             HHhhhcCCH--HHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeee
Q 010439          160 ALAPQLMSR--KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKF  237 (510)
Q Consensus       160 ~~A~~~~~~--~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~  237 (510)
                       +|+..++.  .+++.|+..|++++.++..|.+|++.++..++...+..|+.        .|++  +++.|..|+||+++
T Consensus       228 -~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~--------~gad--~n~~~~~g~tpl~~  296 (471)
T PHA03095        228 -SMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA--------LGAD--INAVSSDGNTPLSL  296 (471)
T ss_pred             -HHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH--------cCCC--CcccCCCCCCHHHH
Confidence             89888864  68889999999999999999999999999988777766544        3567  78899999999999


Q ss_pred             hhcC
Q 010439          238 ASAN  241 (510)
Q Consensus       238 a~~~  241 (510)
                      |+..
T Consensus       297 A~~~  300 (471)
T PHA03095        297 MVRN  300 (471)
T ss_pred             HHHh
Confidence            9843

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=5e-31  Score=264.04  Aligned_cols=186  Identities=25%  Similarity=0.214  Sum_probs=175.2

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      +..++..|.+|-|+||||+.+++++++++||++|+++|... .-|.||||+|+++ |++.+|.+|+++|||++++  |..
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~-G~~~vv~lLlqhGAdpt~~--D~~  144 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN-GHISVVDLLLQHGADPTLK--DKQ  144 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc-CcHHHHHHHHHcCCCCcee--cCC
Confidence            45667788999999999999999999999999999999998 5789999999998 9999999999999999999  999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccc-cCCCCHHHHHhhh
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQ  164 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~t~L~~~A~~  164 (510)
                      |.+|||+|++.|+.-+|-+||.+|+|++.+|.+|+||||+|+.+|+...++.||+.|+.+.  .+| ..|.|||| +|+.
T Consensus       145 G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~--~~d~~~g~TpLH-wa~~  221 (600)
T KOG0509|consen  145 GLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL--LTDDNHGNTPLH-WAVV  221 (600)
T ss_pred             CCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc--ccccccCCchHH-HHHh
Confidence            9999999999999999999999999999999999999999999999888999999999998  666 89999999 9999


Q ss_pred             cCCHHHHHHHhhCCCCCCCCCccccccccccccc
Q 010439          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (510)
Q Consensus       165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~  198 (510)
                      .|+.+++.+|++.|++.+..+.+|++|+..+.+.
T Consensus       222 ~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  222 GGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999988888899999999999999888655

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.3e-30  Score=270.20  Aligned_cols=216  Identities=21%  Similarity=0.202  Sum_probs=198.2

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHH-----HHHhCCcHHHHHHHHHcCCCccccCCCC
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIV-----ACMDSGLINVAKTLIELGANINAYRPGG   84 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~-----A~~~~~~~~~v~~Ll~~ga~~n~~~~d~   84 (510)
                      .+..+..+.||||+|+..|+.++|++||++|++++..+..|.||||+     |+.. ++.+++++|+++|++++..  |.
T Consensus        28 ~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~-~~~~iv~~Ll~~ga~i~~~--d~  104 (480)
T PHA03100         28 NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLT-DVKEIVKLLLEYGANVNAP--DN  104 (480)
T ss_pred             chhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhh-chHHHHHHHHHCCCCCCCC--CC
Confidence            34567889999999999999999999999999999999999999999     9997 9999999999999999988  89


Q ss_pred             CCChHHHHHH--HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHhccccccccccccCCCCHHHH
Q 010439           85 RGGTPLHHAA--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEA  160 (510)
Q Consensus        85 ~g~TpLh~A~--~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~  160 (510)
                      .|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++  .++..|.|||| 
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din--~~d~~g~tpL~-  181 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN--AKNRYGYTPLH-  181 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc--cccCCCCCHHH-
Confidence            9999999999  999999999999999999999999999999999999  9999999999999999  88999999999 


Q ss_pred             HhhhcCCHHHHHHHhhCCCCCCCCCccc------cccccccccccC--hHHHHHHHHhhcCCCCCCCCCCceEEecCCCc
Q 010439          161 LAPQLMSRKIWVVVIPCGTANPSKPLRF------ELVIYPSLQDVQ--PRAVIALWKAKIDEPKFHQPDPSLTIYDQATK  232 (510)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~------~~~l~~a~~~~~--~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~  232 (510)
                      +|+..++.+++++|+++|++++..+..+      .++++.+...+.  ...+..++.        .|.+  ++..|..|.
T Consensus       182 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~--------~g~d--in~~d~~g~  251 (480)
T PHA03100        182 IAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS--------YGVP--INIKDVYGF  251 (480)
T ss_pred             HHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH--------cCCC--CCCCCCCCC
Confidence            9999999999999999999999888777      788888887777  666655443        3445  777889999


Q ss_pred             ceeeehhcC
Q 010439          233 IRYKFASAN  241 (510)
Q Consensus       233 t~l~~a~~~  241 (510)
                      ||||+|+..
T Consensus       252 TpL~~A~~~  260 (480)
T PHA03100        252 TPLHYAVYN  260 (480)
T ss_pred             CHHHHHHHc
Confidence            999999954

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=260.69  Aligned_cols=209  Identities=18%  Similarity=0.090  Sum_probs=189.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHc
Q 010439           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (510)
Q Consensus        17 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~   96 (510)
                      .+++||.|+..|+.++|++|+++|+++|..+..|.||||+|+.. |+.+++++|+++|++++..  +..+.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKF-RDSEAIKLLMKHGAIPDVK--YPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccc--CCCcccHHHHHHHC
Confidence            57999999999999999999999999999999999999999997 9999999999999999987  78899999999999


Q ss_pred             CCHHHHHHHHHCCCCCc-cCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439           97 GLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (510)
Q Consensus        97 g~~~~v~~Ll~~gad~~-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll  175 (510)
                      |+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..++.+++++|+
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~~~~g~tpLh-~A~~~~~~~~v~~Ll  155 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD--IPNTDKFSPLH-LAVMMGDIKGIELLI  155 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence            99999999999998764 456789999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCC-cceeeehhcC
Q 010439          176 PCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT-KIRYKFASAN  241 (510)
Q Consensus       176 ~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~-~t~l~~a~~~  241 (510)
                      ++|++++.++..+.+|++.++..++...+..++.        .|++  ++..+..| .|++++|+..
T Consensus       156 ~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~--------~ga~--~n~~~~~~~~t~l~~A~~~  212 (413)
T PHA02875        156 DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD--------SGAN--IDYFGKNGCVAALCYAIEN  212 (413)
T ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh--------CCCC--CCcCCCCCCchHHHHHHHc
Confidence            9999999999999999999999988776665444        3445  55566655 5788878843

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2e-29  Score=233.94  Aligned_cols=178  Identities=16%  Similarity=0.125  Sum_probs=160.0

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhC-CcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~-~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~   92 (510)
                      ...+.||||+|+..|+.++|+.|++.   ++..|..|.||||+|+..+ ++.+++++|+++|+++|.++ +..|+||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~-~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKT-RDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC-CCCCCCHHHH
Confidence            45678999999999999999999985   5668899999999999852 48999999999999999882 2589999999


Q ss_pred             HHHc---CCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCC
Q 010439           93 AAKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARI--KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (510)
Q Consensus        93 A~~~---g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~--~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~  167 (510)
                      |+..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++  .+|.+|.||||.+++..++
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin--~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL--NKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccCCCCcHHHHHHHhcCC
Confidence            8764   47999999999999999999999999999986  468999999999999999  8999999999954667889


Q ss_pred             HHHHHHHhhCCCCCCCCCcccccccccccc
Q 010439          168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQ  197 (510)
Q Consensus       168 ~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~  197 (510)
                      .+++++|+++|++++.++..+.+|++.+..
T Consensus       172 ~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        172 KKIFDFLTSLGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            999999999999999999999999988754

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.7e-29  Score=260.33  Aligned_cols=209  Identities=15%  Similarity=0.079  Sum_probs=182.3

Q ss_pred             chHHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHH
Q 010439           17 KDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (510)
Q Consensus        17 g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~   94 (510)
                      +.++||.++.  .++.++|++||++|+++|.+|.+|.||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~-g~~eiv~lLL~~GAdin~~--d~~g~TpLh~A~  113 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKI-NNNRIVAMLLTHGADPNAC--DKQHKTPLYYLS  113 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHH
Confidence            4699998774  4578999999999999999999999999999998 9999999999999999998  899999999998


Q ss_pred             HcC--CHHHHHHHHHCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc--CCHH
Q 010439           95 KRG--LEPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL--MSRK  169 (510)
Q Consensus        95 ~~g--~~~~v~~Ll~~gad~~~-~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~--~~~~  169 (510)
                      ..+  ..+++++|+++|++++. .|..|.|||| |+..++.+++++|+++|++++  .+|..|+|||| +|+..  ++.+
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~--~~d~~G~t~Lh-~A~~~~~~~~~  189 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR--IVDKFGKNHIH-RHLMSDNPKAS  189 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc--ccCCCCCCHHH-HHHHhcCCCHH
Confidence            866  48999999999999995 6899999997 677899999999999999999  89999999999 77654  4468


Q ss_pred             HHHHHhhCCCCCCCCCcccccccccccccc--ChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCCC
Q 010439          170 IWVVVIPCGTANPSKPLRFELVIYPSLQDV--QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  243 (510)
Q Consensus       170 ~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~--~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~~  243 (510)
                      ++++|+++|++++.++..|.+|++.++..+  ....+..++         .+.+  ++..|..|+||||+|+....
T Consensus       190 ~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl---------~gad--in~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        190 TISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL---------PSTD--VNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH---------cCCC--CCCCCCCCCCHHHHHHHhCC
Confidence            999999999999999999999999999765  333332211         1345  88899999999999996654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=274.81  Aligned_cols=229  Identities=15%  Similarity=0.102  Sum_probs=144.4

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHH--------------
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI--------------   71 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll--------------   71 (510)
                      .+++++.+|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. ++.+++++|+              
T Consensus       167 ~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~-~~~~ivk~Ll~~~~~~~~~~~~L~  245 (682)
T PHA02876        167 GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS-KNIDTIKAIIDNRSNINKNDLSLL  245 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCCCCCcHHHH
Confidence            3577888999999999999999999999999999999887777777777776664 5555544333              


Q ss_pred             ---------------HcCCCccccCCCCCCChHHHHHHHcCCH-HHHHHHHHCCCCCccCCCCCCcHHHHHHHcC-CHHH
Q 010439           72 ---------------ELGANINAYRPGGRGGTPLHHAAKRGLE-PTVRLLLSCGANALVRNDDCHTALGVARIKG-HINV  134 (510)
Q Consensus        72 ---------------~~ga~~n~~~~d~~g~TpLh~A~~~g~~-~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g-~~~~  134 (510)
                                     +.|++++..  |..|+||||+|+..++. +++++|++.|++++.+|..|.||||+|+..| ..++
T Consensus       246 ~ai~~~~~~~~~~Ll~~g~~vn~~--d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~  323 (682)
T PHA02876        246 KAIRNEDLETSLLLYDAGFSVNSI--DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTEN  323 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHH
Confidence                           344445544  55566666666666654 4666666666666666666666666666665 3555


Q ss_pred             HHHHHhccccccccccccCCCCHHHHHhhh-cCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhh--
Q 010439          135 VRAIESHICYFCGWLREFYGPSFLEALAPQ-LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK--  211 (510)
Q Consensus       135 v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~-~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~--  211 (510)
                      +++|+..|++++  .+|..|.|||| +|+. .+..+++++|++.|++++.++..+.+|++.++..++...+..++...  
T Consensus       324 v~~Ll~~gadin--~~d~~g~TpLh-~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad  400 (682)
T PHA02876        324 IRTLIMLGADVN--AADRLYITPLH-QASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD  400 (682)
T ss_pred             HHHHHHcCCCCC--CcccCCCcHHH-HHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            555555555555  45555555555 4433 23455555555555555555555555555555544444443333111  


Q ss_pred             ------------------------cCCCCCCCCCCceEEecCCCcceeeehhcCC
Q 010439          212 ------------------------IDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (510)
Q Consensus       212 ------------------------~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~  242 (510)
                                              +..++..+.+  ++..|..|+||||+|+...
T Consensus       401 ~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad--in~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        401 IEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN--VNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC--CCcCCCCCChHHHHHHHhC
Confidence                                    1122334556  7788889999999988543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.9e-29  Score=263.00  Aligned_cols=185  Identities=21%  Similarity=0.230  Sum_probs=170.0

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCH--------------------------------------------------------
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDV--------------------------------------------------------   30 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~--------------------------------------------------------   30 (510)
                      +++++.+|.+|.||||+|+..|+.                                                        
T Consensus        60 gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~  139 (477)
T PHA02878         60 GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKK  139 (477)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhc
Confidence            577888999999999999986543                                                        


Q ss_pred             --------HHHHHHHHcCCCCcccCCC-CChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHH
Q 010439           31 --------DAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPT  101 (510)
Q Consensus        31 --------~~v~~Ll~~g~~~~~~d~~-g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~  101 (510)
                              +++++|+++|++++..|.. |.||||+|+.. |+.+++++|+++|++++..  |..|+||||+|+..|+.++
T Consensus       140 ~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~-~~~~iv~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~i  216 (477)
T PHA02878        140 SKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATEN-KDQRLTELLLSYGANVNIP--DKTNNSPLHHAVKHYNKPI  216 (477)
T ss_pred             cchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhC-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCHHH
Confidence                    2677788889999999988 99999999998 9999999999999999998  8999999999999999999


Q ss_pred             HHHHHHCCCCCccCCCCCCcHHHHHHHc-CCHHHHHHHHhcccccccccccc-CCCCHHHHHhhhcCCHHHHHHHhhCCC
Q 010439          102 VRLLLSCGANALVRNDDCHTALGVARIK-GHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCGT  179 (510)
Q Consensus       102 v~~Ll~~gad~~~~d~~g~TpL~~A~~~-g~~~~v~~Ll~~ga~~~~~~~d~-~g~t~L~~~A~~~~~~~~~~~Ll~~ga  179 (510)
                      +++|++.|++++.+|..|.||||+|+.. ++.+++++|+++|++++  .++. .|.|||| +|  .++.+++++|+++|+
T Consensus       217 v~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn--~~~~~~g~TpLh-~A--~~~~~~v~~Ll~~ga  291 (477)
T PHA02878        217 VHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN--AKSYILGLTALH-SS--IKSERKLKLLLEYGA  291 (477)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC--ccCCCCCCCHHH-HH--ccCHHHHHHHHHCCC
Confidence            9999999999999999999999999976 78999999999999999  6765 7999999 78  577899999999999


Q ss_pred             CCCCCCcccccccccccccc
Q 010439          180 ANPSKPLRFELVIYPSLQDV  199 (510)
Q Consensus       180 ~~~~~~~~~~~~l~~a~~~~  199 (510)
                      |++..+..|.+|++.++...
T Consensus       292 din~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        292 DINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             CCCCcCCCCCCHHHHHHHHc
Confidence            99999999999999998643

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8e-29  Score=270.76  Aligned_cols=230  Identities=18%  Similarity=0.096  Sum_probs=200.0

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCH-HHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDV-DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      +++.+.++..|.||||+|+..|+. +++++|+++|++++.+|..|.||||+|+..+...+++++|+..|++++..  |..
T Consensus       263 g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~--d~~  340 (682)
T PHA02876        263 GFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAA--DRL  340 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc--ccC
Confidence            456777888999999999999997 58999999999999999999999999999833799999999999999998  899


Q ss_pred             CChHHHHHHHc-CCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhh
Q 010439           86 GGTPLHHAAKR-GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (510)
Q Consensus        86 g~TpLh~A~~~-g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~  164 (510)
                      |+||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||| +|+.
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~Lh-~A~~  417 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTALH-FALC  417 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchHH-HHHH
Confidence            99999999985 57899999999999999999999999999999999999999999999999  89999999999 7765


Q ss_pred             cC-CHHHHHHHhhCCCCCCCCCccccccccccccccC-hHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCC
Q 010439          165 LM-SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ-PRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (510)
Q Consensus       165 ~~-~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~-~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~  242 (510)
                      .+ ...++++|+++|++++.++..|.+|++.++..+. ...+..|        +..+++  ++..|..|.||+++|+...
T Consensus       418 ~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lL--------l~~Gad--~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        418 GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEML--------LDNGAD--VNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHH--------HHCCCC--CCCCCCCCCCHHHHHHHhC
Confidence            54 4678999999999999999999999999987653 3333322        234667  8889999999999998654


Q ss_pred             CChHHHHHHH
Q 010439          243 GDKHQLQWLD  252 (510)
Q Consensus       243 ~~~~ql~~~~  252 (510)
                       ..+.++..+
T Consensus       488 -~~v~~Ll~~  496 (682)
T PHA02876        488 -GIVNILLHY  496 (682)
T ss_pred             -CHHHHHHHC
Confidence             344444433

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=259.32  Aligned_cols=200  Identities=15%  Similarity=0.108  Sum_probs=178.4

Q ss_pred             cccChhhhcCCchHHHHHHHHc-----CCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCcc
Q 010439            6 NSMNQHQQRQSKDELLYQWVIA-----GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANIN   78 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~--~~~~~v~~Ll~~ga~~n   78 (510)
                      .++++|.++..|.||||.|+.+     +..+++++|+++|+|+|.+|..|+||||+|+..+  ++.+++++|+++|++++
T Consensus        60 ~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn  139 (489)
T PHA02798         60 LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT  139 (489)
T ss_pred             CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc
Confidence            4678888999999999999864     7799999999999999999999999999999863  37899999999999999


Q ss_pred             ccCCCCCCChHHHHHHHcCC---HHHHHHHHHCCCCCccCC-CCCCcHHHHHHHc----CCHHHHHHHHhccccccc---
Q 010439           79 AYRPGGRGGTPLHHAAKRGL---EPTVRLLLSCGANALVRN-DDCHTALGVARIK----GHINVVRAIESHICYFCG---  147 (510)
Q Consensus        79 ~~~~d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~----g~~~~v~~Ll~~ga~~~~---  147 (510)
                      ..  |..|+||||+|+..++   .+++++|+++|+|++.++ ..|.||||.++..    ++.+++++|+++|++++.   
T Consensus       140 ~~--d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        140 LL--DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             cc--CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence            98  8999999999999988   999999999999999885 5789999998764    478999999988875541   


Q ss_pred             ----------------------------------cccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccccccc
Q 010439          148 ----------------------------------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY  193 (510)
Q Consensus       148 ----------------------------------~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~  193 (510)
                                                        +.+|..|.|||| +|+..++.+++++|+++|+|++.++..|++|++
T Consensus       218 ~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~-~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~  296 (489)
T PHA02798        218 SHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLY-YSVSHNNRKIFEYLLQLGGDINIITELGNTCLF  296 (489)
T ss_pred             cccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHH-HHHHcCcHHHHHHHHHcCCcccccCCCCCcHHH
Confidence                                              146778999999 999999999999999999999999999999999


Q ss_pred             ccccccChHHHHHHH
Q 010439          194 PSLQDVQPRAVIALW  208 (510)
Q Consensus       194 ~a~~~~~~~~i~~l~  208 (510)
                      .+...+....+..++
T Consensus       297 ~A~~~~~~~iv~~lL  311 (489)
T PHA02798        297 TAFENESKFIFNSIL  311 (489)
T ss_pred             HHHHcCcHHHHHHHH
Confidence            999988877666544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2e-28  Score=257.52  Aligned_cols=219  Identities=16%  Similarity=0.134  Sum_probs=170.0

Q ss_pred             cccChhhhcCCchHHHHHHHHc--CCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhC-----CcHHHHHHHHHcCCCcc
Q 010439            6 NSMNQHQQRQSKDELLYQWVIA--GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-----GLINVAKTLIELGANIN   78 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~-----~~~~~v~~Ll~~ga~~n   78 (510)
                      .++++|.+ .+|.|+||+++..  ++.++|++||++|+|+|.++ .+.||||.|+.++     ++.+++++|+++|+|+|
T Consensus        25 ~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin  102 (494)
T PHA02989         25 TGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADIN  102 (494)
T ss_pred             cCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCC
Confidence            36677777 5688988776654  37899999999999999876 5789999887641     34789999999999999


Q ss_pred             ccCCCCCCChHHHHHHHc---CCHHHHHHHHHCCCCC-ccCCCCCCcHHHHHHHc--CCHHHHHHHHhccccccccc-cc
Q 010439           79 AYRPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANA-LVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWL-RE  151 (510)
Q Consensus        79 ~~~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~-~~~d~~g~TpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~-~d  151 (510)
                      .+  |..|+||||.|+..   ++.+++++|+++|+|+ +.+|..|+||||+|+..  ++.++|++|+++|++++  . .+
T Consensus       103 ~~--d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~--~~~~  178 (494)
T PHA02989        103 LK--TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLF--EKTS  178 (494)
T ss_pred             CC--CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccc
Confidence            98  88999999988765   6789999999999999 78999999999998764  57899999999999998  5 67


Q ss_pred             cCCCCHHHHHhhhc----CCHHHHHHHhhCCCCCCCCCcc--------------------------------------cc
Q 010439          152 FYGPSFLEALAPQL----MSRKIWVVVIPCGTANPSKPLR--------------------------------------FE  189 (510)
Q Consensus       152 ~~g~t~L~~~A~~~----~~~~~~~~Ll~~ga~~~~~~~~--------------------------------------~~  189 (510)
                      ..|.|||| +|+..    ++.+++++|+++|++++.++..                                      |.
T Consensus       179 ~~g~tpL~-~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~  257 (494)
T PHA02989        179 LYGLTPMN-IYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGF  257 (494)
T ss_pred             ccCCChHH-HHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCC
Confidence            88999999 77654    4889999999999888766643                                      44


Q ss_pred             ccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439          190 LVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (510)
Q Consensus       190 ~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~  241 (510)
                      +|++.++..++...+..        ++..|++  ++..|..|.|||++|+..
T Consensus       258 TpL~~Aa~~~~~~~v~~--------LL~~Gad--in~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        258 NPLLISAKVDNYEAFNY--------LLKLGDD--IYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             CHHHHHHHhcCHHHHHH--------HHHcCCC--ccccCCCCCCHHHHHHHc
Confidence            44444444444333332        2334556  677778888888887743

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=7e-28  Score=245.69  Aligned_cols=236  Identities=16%  Similarity=0.068  Sum_probs=182.1

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHH-----cCCCccccC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE-----LGANINAYR   81 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~-----~ga~~n~~~   81 (510)
                      ++++|..|+.|.||||.|+..++.|..+.|++.|+++-..|.+|.+|+|.|++. |..++.++.+.     .+..+|.. 
T Consensus       144 ~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s-~s~e~mEi~l~~~g~~r~~~in~~-  221 (929)
T KOG0510|consen  144 GADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARS-GSKECMEIFLPEHGYERQTHINFD-  221 (929)
T ss_pred             cCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHh-cchhhhhhhhccccchhhcccccc-
Confidence            366777777777777777777777777777777777777777777777777776 77777777776     56677776 


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCC---------------CccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGAN---------------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (510)
Q Consensus        82 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad---------------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  146 (510)
                       +..|.||||.|+..|+.++++.+|+.|..               ++..|++|.||||+|++.|+.+.|+.|+..|++++
T Consensus       222 -~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~  300 (929)
T KOG0510|consen  222 -NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN  300 (929)
T ss_pred             -cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc
Confidence             77788888888888888888888877643               35578889999999999999999999999999998


Q ss_pred             ccccccCCCCHHHHHhhhcCCHHHHHHHhh-CC-CCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCce
Q 010439          147 GWLREFYGPSFLEALAPQLMSRKIWVVVIP-CG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSL  224 (510)
Q Consensus       147 ~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~-~g-a~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~  224 (510)
                        .++.++.|||| .|+.+|+..+++.|++ .| ...+..|..+.+|+|.+.+.++.+.+..|++.......       .
T Consensus       301 --~kn~d~~spLH-~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~-------~  370 (929)
T KOG0510|consen  301 --SKNKDEESPLH-FAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLN-------M  370 (929)
T ss_pred             --ccCCCCCCchH-HHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhc-------c
Confidence              88899999999 8999999999998887 43 45677888889999999988888877766654432221       1


Q ss_pred             EEecCCCcceeeehh-cCCCChHHHHHHHHhhc
Q 010439          225 TIYDQATKIRYKFAS-ANEGDKHQLQWLDNACR  256 (510)
Q Consensus       225 ~~~d~~~~t~l~~a~-~~~~~~~ql~~~~~~~~  256 (510)
                      ...|.+|.|+||+|+ ..+...++.+..+ +|.
T Consensus       371 ~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~  402 (929)
T KOG0510|consen  371 SEADSDGNTALHLAAKYGNTSAVQKLISH-GAD  402 (929)
T ss_pred             cccccCCchhhhHHHHhccHHHHHHHHHc-CCc
Confidence            134899999999999 5555566666655 443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.2e-27  Score=249.30  Aligned_cols=217  Identities=18%  Similarity=0.181  Sum_probs=175.8

Q ss_pred             ChhhhcCCchHHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHh----CCcHHHHHHHHHcCCCccccCC
Q 010439            9 NQHQQRQSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD----SGLINVAKTLIELGANINAYRP   82 (510)
Q Consensus         9 ~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~----~~~~~~v~~Ll~~ga~~n~~~~   82 (510)
                      +.+.. ..|.|+++.+..  .++.++|++|+++|+++|.+|..|.||||+|+.+    .+..+++++|+++|+|+|.+  
T Consensus        29 ~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~--  105 (489)
T PHA02798         29 NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKK--  105 (489)
T ss_pred             Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCC--
Confidence            44443 457787775554  4589999999999999999999999999998752    15689999999999999998  


Q ss_pred             CCCCChHHHHHHHcC---CHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCC---HHHHHHHHhcccccccccc-ccCCC
Q 010439           83 GGRGGTPLHHAAKRG---LEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHICYFCGWLR-EFYGP  155 (510)
Q Consensus        83 d~~g~TpLh~A~~~g---~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~---~~~v~~Ll~~ga~~~~~~~-d~~g~  155 (510)
                      |..|+||||+|+..+   +.+++++|+++|+|++.+|..|.||||+|+..++   .+++++|+++|++++  .+ +..|.
T Consensus       106 d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin--~~~~~~~~  183 (489)
T PHA02798        106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN--THNNKEKY  183 (489)
T ss_pred             CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc--cccCcCCC
Confidence            889999999999875   7899999999999999999999999999999998   999999999999998  66 45789


Q ss_pred             CHHHHHhhhc----CCHHHHHHHhhCCCCCCCC---------------------------------------Cccccccc
Q 010439          156 SFLEALAPQL----MSRKIWVVVIPCGTANPSK---------------------------------------PLRFELVI  192 (510)
Q Consensus       156 t~L~~~A~~~----~~~~~~~~Ll~~ga~~~~~---------------------------------------~~~~~~~l  192 (510)
                      |||| .+...    ++.+++++|+++|++++..                                       +..|.+|+
T Consensus       184 t~Lh-~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL  262 (489)
T PHA02798        184 DTLH-CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPL  262 (489)
T ss_pred             cHHH-HHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHH
Confidence            9999 66543    4789999999888766553                                       34456666


Q ss_pred             cccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439          193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (510)
Q Consensus       193 ~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~  241 (510)
                      +.++..++...+..|        +..|++  +++.|..|+|||++|+.+
T Consensus       263 ~~A~~~~~~~~v~~L--------L~~GAd--in~~d~~G~TpL~~A~~~  301 (489)
T PHA02798        263 YYSVSHNNRKIFEYL--------LQLGGD--INIITELGNTCLFTAFEN  301 (489)
T ss_pred             HHHHHcCcHHHHHHH--------HHcCCc--ccccCCCCCcHHHHHHHc
Confidence            666666554444433        334556  778888888888888743

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-27  Score=244.38  Aligned_cols=233  Identities=19%  Similarity=0.138  Sum_probs=189.9

Q ss_pred             cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCC
Q 010439            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (510)
                      ++.+..+.++.+|||+|+..|+++.++.|+++|+|+|..|..|.||||+||.. ++.|..++|++.|+++-..  |.+|+
T Consensus       112 ad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~-~~~E~~k~Li~~~a~~~K~--~~~~~  188 (929)
T KOG0510|consen  112 ADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARK-NKVEAKKELINKGADPCKS--DIDGN  188 (929)
T ss_pred             CCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhc-ChHHHHHHHHhcCCCCCcc--cCcCC
Confidence            45556677778888888888888888888888888888888888888888876 7777777888888888766  77888


Q ss_pred             hHHHHHHHcCCHHHHHHHHH-----CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccc-------------cc
Q 010439           88 TPLHHAAKRGLEPTVRLLLS-----CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG-------------WL  149 (510)
Q Consensus        88 TpLh~A~~~g~~~~v~~Ll~-----~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~-------------~~  149 (510)
                      +|+|.|++.|..++.++.+.     .+..+|..+..|.||||.|+..|+.++++.+|+.|.....             +.
T Consensus       189 ~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~  268 (929)
T KOG0510|consen  189 FPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVND  268 (929)
T ss_pred             chHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhc
Confidence            88888888888888888876     5667888889999999999999999999999988854331             35


Q ss_pred             cccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecC
Q 010439          150 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ  229 (510)
Q Consensus       150 ~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~  229 (510)
                      .|.+|.|||| +|+..|+.+.++.|+..|++++.++..+.+|+|.|+..+...++..|+++.-        ...++..|.
T Consensus       269 ~d~dg~tpLH-~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~--------~rllne~D~  339 (929)
T KOG0510|consen  269 EDNDGCTPLH-YAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESD--------TRLLNESDL  339 (929)
T ss_pred             ccccCCchHH-HHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcC--------ccccccccc
Confidence            6889999999 9999999999999999999999999999999999999999999998877221        234677888


Q ss_pred             CCcceeeehhcCCCC-hHHHHHHH
Q 010439          230 ATKIRYKFASANEGD-KHQLQWLD  252 (510)
Q Consensus       230 ~~~t~l~~a~~~~~~-~~ql~~~~  252 (510)
                      .|.||||+++.+..+ ..|+++-.
T Consensus       340 ~g~tpLHlaa~~gH~~v~qlLl~~  363 (929)
T KOG0510|consen  340 HGMTPLHLAAKSGHDRVVQLLLNK  363 (929)
T ss_pred             cCCCchhhhhhcCHHHHHHHHHhc
Confidence            999999999944444 44444433

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.2e-27  Score=247.54  Aligned_cols=200  Identities=14%  Similarity=0.126  Sum_probs=151.8

Q ss_pred             cccChhhhcCCchHHHHHHHH------cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCc
Q 010439            6 NSMNQHQQRQSKDELLYQWVI------AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANI   77 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~------~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~--~~~~~v~~Ll~~ga~~   77 (510)
                      .++++|.++ .+.||||.|+.      .|+.++|++||++|+|+|.+|..|.||||.|+..+  ++.+++++|+++|+|+
T Consensus        59 ~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadi  137 (494)
T PHA02989         59 NGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINV  137 (494)
T ss_pred             cCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCc
Confidence            355666555 45777777764      46777777777777777777777777777766532  4577777777777777


Q ss_pred             -cccCCCCCCChHHHHHHHc--CCHHHHHHHHHCCCCCcc-CCCCCCcHHHHHHHcC----CHHHHHHHHhccccccc--
Q 010439           78 -NAYRPGGRGGTPLHHAAKR--GLEPTVRLLLSCGANALV-RNDDCHTALGVARIKG----HINVVRAIESHICYFCG--  147 (510)
Q Consensus        78 -n~~~~d~~g~TpLh~A~~~--g~~~~v~~Ll~~gad~~~-~d~~g~TpL~~A~~~g----~~~~v~~Ll~~ga~~~~--  147 (510)
                       +..  |..|+||||+|+..  ++.++|++|+++|+|++. .+..|.||||+|+..+    +.+++++|+++|++++.  
T Consensus       138 n~~~--d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        138 NDVK--NSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             cccc--CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence             565  67777777777653  567777777777777776 5667777777776553    67777777777766541  


Q ss_pred             ----------------------------------cccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccccccc
Q 010439          148 ----------------------------------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY  193 (510)
Q Consensus       148 ----------------------------------~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~  193 (510)
                                                        +.+|..|.|||| +|+..++.+++++|+++|+|++.++..|.+|++
T Consensus       216 ~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~-~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~  294 (494)
T PHA02989        216 NGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLL-ISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLT  294 (494)
T ss_pred             CccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHH-HHHHhcCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence                                              145677999999 999999999999999999999999999999999


Q ss_pred             ccccccChHHHHHHHH
Q 010439          194 PSLQDVQPRAVIALWK  209 (510)
Q Consensus       194 ~a~~~~~~~~i~~l~~  209 (510)
                      .+...++...+..++.
T Consensus       295 ~A~~~~~~~iv~~LL~  310 (494)
T PHA02989        295 YAIKHGNIDMLNRILQ  310 (494)
T ss_pred             HHHHcCCHHHHHHHHh
Confidence            9999988777765543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.6e-27  Score=216.35  Aligned_cols=151  Identities=15%  Similarity=0.115  Sum_probs=137.1

Q ss_pred             hhhhcCCchHHHHHHHHcC--CHHHHHHHHHcCCCCcccC-CCCChHHHHHHHhC--CcHHHHHHHHHcCCCccccCCCC
Q 010439           10 QHQQRQSKDELLYQWVIAG--DVDAIRALRSQGASLEWMD-KEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPGG   84 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A~~~~--~~~~~v~~Ll~~ga~~n~~~~d~   84 (510)
                      .+..+..|.||||+|+..+  +.++|++||++|+++|.++ ..|.||||+|+...  ++.+++++|+++|+++|.+  |.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~--d~  121 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEE--DE  121 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc--CC
Confidence            4567889999999999864  8999999999999999997 48999999988642  4799999999999999998  89


Q ss_pred             CCChHHHHHHH--cCCHHHHHHHHHCCCCCccCCCCCCcHHHH-HHHcCCHHHHHHHHhccccccccccccCCCCHHHHH
Q 010439           85 RGGTPLHHAAK--RGLEPTVRLLLSCGANALVRNDDCHTALGV-ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL  161 (510)
Q Consensus        85 ~g~TpLh~A~~--~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~-A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~  161 (510)
                      .|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++  .+|..|.|||| +
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~--~~d~~g~tpl~-l  198 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN--ETNKSGYNCYD-L  198 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-H
Confidence            99999999986  468999999999999999999999999995 567889999999999999999  89999999999 7


Q ss_pred             hhhc
Q 010439          162 APQL  165 (510)
Q Consensus       162 A~~~  165 (510)
                      |...
T Consensus       199 a~~~  202 (209)
T PHA02859        199 IKFR  202 (209)
T ss_pred             Hhhh
Confidence            7654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=9.4e-27  Score=232.33  Aligned_cols=168  Identities=13%  Similarity=0.019  Sum_probs=151.8

Q ss_pred             hhcCCchHHHHHHHH--cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCcccc-CC---CCC
Q 010439           12 QQRQSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RP---GGR   85 (510)
Q Consensus        12 ~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~-~~---d~~   85 (510)
                      .++.+++|+||.|+.  .|+.++|++|+++|||++..  ++.||||+|+.. ++.+++++|+++|++.+.. +.   +..
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~-~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK-KESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc-CcHHHHHHHHhcCCcccccccchhhhhh
Confidence            567889999999999  89999999999999999884  568999999997 9999999999999854322 00   134


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~  165 (510)
                      |.|++|.|+..++.+++++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh-~Aa~~  264 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLD-VAVDR  264 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHc
Confidence            7899999999999999999999999999999999999999999999999999999999999  89999999999 89888


Q ss_pred             C--------CHHHHHHHhhCCCCCCCCC
Q 010439          166 M--------SRKIWVVVIPCGTANPSKP  185 (510)
Q Consensus       166 ~--------~~~~~~~Ll~~ga~~~~~~  185 (510)
                      |        +.+++++|+++|++++...
T Consensus       265 g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCCCCCchh
Confidence            7        4699999999999987654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=2.4e-27  Score=228.05  Aligned_cols=188  Identities=23%  Similarity=0.225  Sum_probs=144.4

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHc-CCCCc--------ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCC
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQ-GASLE--------WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~--------~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~   84 (510)
                      ..+|.|||.+|+++|+.++|++|+++ ++++.        -....|-+||-.|+.. ||+++|++|+++|+++|..  ..
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaA-GHl~vVk~L~~~ga~VN~t--T~  115 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAA-GHLEVVKLLLRRGASVNDT--TR  115 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhcc-CcHHHHHHHHHhcCccccc--cc
Confidence            45677888888888888888888883 34432        2234677777777765 8888888888888888866  55


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhh
Q 010439           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (510)
Q Consensus        85 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~  164 (510)
                      ...|||--||.-|+.++|++|+++|+|+++.|..|.|.||+|+.+||.+|+++|++.|+|+|  .++..|.|+|| .++.
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn--~ks~kGNTALH-~caE  192 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN--AKSYKGNTALH-DCAE  192 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc--hhcccCchHHH-hhhh
Confidence            66688888888888888888888888888888888888888888888888888888888888  78888888888 7888


Q ss_pred             cCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (510)
Q Consensus       165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~  208 (510)
                      .|+.+|+++|+.+|+.++. +..|.+|+..+...++...+..+.
T Consensus       193 sG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  193 SGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             cccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHh
Confidence            8888888888888876643 445788888877777776666554

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=2e-26  Score=246.43  Aligned_cols=218  Identities=14%  Similarity=0.112  Sum_probs=175.9

Q ss_pred             cccChhhhcCCchHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcH----HHHHHHHHcCCCcc
Q 010439            6 NSMNQHQQRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI----NVAKTLIELGANIN   78 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~----~~v~~Ll~~ga~~n   78 (510)
                      ++...+.+|.+|+||||+|+..   |+.++|++||++|++++.+|..|+||||+|+.. |+.    +++++|++.+...|
T Consensus        21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~-g~~~v~~~~~~~Ll~~~~~~n   99 (661)
T PHA02917         21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS-RHVKVNKDIAMALLEATGYSN   99 (661)
T ss_pred             ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-CChhHHHHHHHHHHhccCCCC
Confidence            4555677799999999998655   889999999999999999999999999999997 774    46688888765555


Q ss_pred             ccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHH--HcCCHHHHHHHHhcccccccccccc---C
Q 010439           79 AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR--IKGHINVVRAIESHICYFCGWLREF---Y  153 (510)
Q Consensus        79 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~--~~g~~~~v~~Ll~~ga~~~~~~~d~---~  153 (510)
                      ..  +  ..+++|+|+..++.++|++|+++|+|++.+|..|+||||+|+  ..|+.++|++|+++|++++  .+|.   .
T Consensus       100 ~~--~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn--~~d~~~~~  173 (661)
T PHA02917        100 IN--D--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL--YEDEDDEY  173 (661)
T ss_pred             CC--C--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc--cccccccc
Confidence            54  3  237788899999999999999999999999999999999654  5789999999999999997  4443   3


Q ss_pred             C-----------CCHHHHHhhh-----------cCCHHHHHHHhhCCCCCCCCCccccccccccccccChH-HHHHHHHh
Q 010439          154 G-----------PSFLEALAPQ-----------LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR-AVIALWKA  210 (510)
Q Consensus       154 g-----------~t~L~~~A~~-----------~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~-~i~~l~~~  210 (510)
                      |           .|||| +|+.           +++.+++++|+++|+|++.++..|.+|++.++..++.. .+.+++..
T Consensus       174 g~~~~~~~~~~~~t~L~-~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        174 GYAYDDYQPRNCGTVLH-LYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             ccccccccccccccHHH-HHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence            4           59999 7764           56899999999999999999999999999999888753 23332222


Q ss_pred             hcCCCCCCCCCC--ceEEecCCCcceeeehh
Q 010439          211 KIDEPKFHQPDP--SLTIYDQATKIRYKFAS  239 (510)
Q Consensus       211 ~~~~~~~~~~~~--~~~~~d~~~~t~l~~a~  239 (510)
                              +.+.  ...+.|..+.++++++.
T Consensus       253 --------g~d~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        253 --------GIDNTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             --------CCcccccccccCcccccchHHHH
Confidence                    2220  12345566677777777

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=5e-27  Score=225.87  Aligned_cols=157  Identities=25%  Similarity=0.287  Sum_probs=151.3

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~   92 (510)
                      ....|-+||-.|+..||+++||.|+++|++||.......|||--||.- |+.++|++|+++|+|+++.  |..|.|.||+
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfD-G~leivKyLvE~gad~~Ia--nrhGhTcLmI  156 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFD-GHLEIVKYLVEHGADPEIA--NRHGHTCLMI  156 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhc-chhHHHHHHHHcCCCCccc--ccCCCeeEEe
Confidence            456789999999999999999999999999999988889999999997 9999999999999999998  9999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (510)
Q Consensus        93 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~  172 (510)
                      ||.+||.+|+++|++.|+|+|.++..|.|+||.+++.|+++++++|+++|+.+.   +|..|.|||. .|+..|+.++++
T Consensus       157 a~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~---~d~~GmtPL~-~Aa~tG~~~iVe  232 (615)
T KOG0508|consen  157 ACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID---VDGHGMTPLL-LAAVTGHTDIVE  232 (615)
T ss_pred             eeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee---ecCCCCchHH-HHhhhcchHHHH
Confidence            999999999999999999999999999999999999999999999999999986   7889999999 999999999999


Q ss_pred             HHhh
Q 010439          173 VVIP  176 (510)
Q Consensus       173 ~Ll~  176 (510)
                      +|++
T Consensus       233 ~L~~  236 (615)
T KOG0508|consen  233 RLLQ  236 (615)
T ss_pred             HHhc
Confidence            9996

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=5.1e-27  Score=219.22  Aligned_cols=166  Identities=25%  Similarity=0.378  Sum_probs=151.2

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCChHHHHHHHh----CCcHHHHHHHHHcCCCccccC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQG-ASLEWMDKEGKTPLIVACMD----SGLINVAKTLIELGANINAYR   81 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~TpL~~A~~~----~~~~~~v~~Ll~~ga~~n~~~   81 (510)
                      .+-+|.-|.+|+|+||||+.++++++|+.||+-| +++|..|+.|+||+|+|+..    ..+.++|..|.+.| |+|++-
T Consensus       258 ~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKA  336 (452)
T KOG0514|consen  258 EYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKA  336 (452)
T ss_pred             HHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhh
Confidence            3446778999999999999999999999999988 69999999999999999874    14578899999886 888874


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhc-cccccccccccCCCCHHHH
Q 010439           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPSFLEA  160 (510)
Q Consensus        82 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~t~L~~  160 (510)
                       ...|+|+||+|+.+|+.++|+.||.+|+|+|++|.+|-|+||+|++.||.|||++||.. ++|+.  ..|.+|.|+|. 
T Consensus       337 -sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s--LtD~DgSTAl~-  412 (452)
T KOG0514|consen  337 -SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS--LTDVDGSTALS-  412 (452)
T ss_pred             -hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce--eecCCCchhhh-
Confidence             67899999999999999999999999999999999999999999999999999999976 47888  89999999999 


Q ss_pred             HhhhcCCHHHHHHHhhC
Q 010439          161 LAPQLMSRKIWVVVIPC  177 (510)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~  177 (510)
                      +|...|+.+|.-+|-.+
T Consensus       413 IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  413 IALEAGHREIAVMLYAH  429 (452)
T ss_pred             hHHhcCchHHHHHHHHH
Confidence            99999999999887644

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=223.84  Aligned_cols=181  Identities=12%  Similarity=-0.038  Sum_probs=164.3

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCCChHHHHHHH--hCCcHHHHHHHHHcCCCcc
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACM--DSGLINVAKTLIELGANIN   78 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~d~~g~TpL~~A~~--~~~~~~~v~~Ll~~ga~~n   78 (510)
                      +.+++....+|     +|+..+..+++++|+++|+++|      .++..++|+||+++.  . |+.++|++|+++|||++
T Consensus        72 ~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~-n~~eiV~~LI~~GADIn  145 (437)
T PHA02795         72 RDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY-VEIDIVDFMVDHGAVIY  145 (437)
T ss_pred             Ccchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC-CCHHHHHHHHHCCCCCC
Confidence            45666666666     8999999999999999999999      788899999999998  6 89999999999999999


Q ss_pred             ccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC------CCCCCcHHHHHHHcCCHHHHHHHHhcccccccccccc
Q 010439           79 AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR------NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF  152 (510)
Q Consensus        79 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~------d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~  152 (510)
                      ..    .+.||||+|+..++.+++++|+++|++....      +..|.|++|.|...++.+++++|+++|++++  .+|.
T Consensus       146 ~~----~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN--~kD~  219 (437)
T PHA02795        146 KI----ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN--QLDA  219 (437)
T ss_pred             CC----CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--cCCC
Confidence            75    4589999999999999999999999854322      2357899999999999999999999999999  8999


Q ss_pred             CCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccC
Q 010439          153 YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (510)
Q Consensus       153 ~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~  200 (510)
                      .|.|||| +|+..|+.+++++|+++|++++.++..|.+|++.|+..+.
T Consensus       220 ~G~TpLh-~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        220 GGRTLLY-RAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             CCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999 9999999999999999999999999999999999988774

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=5e-25  Score=230.08  Aligned_cols=198  Identities=17%  Similarity=0.088  Sum_probs=164.5

Q ss_pred             Chh-hhcCCchHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCChHHHHHHHhC-CcHHHHHHHHHcCCCc--cccC
Q 010439            9 NQH-QQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANI--NAYR   81 (510)
Q Consensus         9 ~~~-~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~-~~~~~v~~Ll~~ga~~--n~~~   81 (510)
                      ++| .+|..|+||||+|+..|   +.++|++||++||+++.+|..|+||||+|+..+ ++.++|++|+++|++.  +.. 
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~-  110 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT-  110 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc-
Confidence            555 77889999999999997   599999999999999999999999999999862 3799999999997655  655 


Q ss_pred             CCCCCChHHHHHHH--cCCHHHHHHHHH-CCCCCccCCC-----CCCcHHHHHHHcCCHHHHHHHHhcccccccc-----
Q 010439           82 PGGRGGTPLHHAAK--RGLEPTVRLLLS-CGANALVRND-----DCHTALGVARIKGHINVVRAIESHICYFCGW-----  148 (510)
Q Consensus        82 ~d~~g~TpLh~A~~--~g~~~~v~~Ll~-~gad~~~~d~-----~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~-----  148 (510)
                       +..+.+|||.++.  +++.++|++|+. .++|++...+     .|.+|++++...++.++|++|+++|+++++.     
T Consensus       111 -~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        111 -SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             -cccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence             7779999999998  899999999996 6788876643     7899999999999999999999999999642     


Q ss_pred             ccccCCCC-HHHHHh------hhcCCHHHHHHHhhCCCCCCCCCccccccccc--cccccChHHHHHHHH
Q 010439          149 LREFYGPS-FLEALA------PQLMSRKIWVVVIPCGTANPSKPLRFELVIYP--SLQDVQPRAVIALWK  209 (510)
Q Consensus       149 ~~d~~g~t-~L~~~A------~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~--a~~~~~~~~i~~l~~  209 (510)
                      ..+..+.+ .|| +.      ...+..|++++|+++|++++.++..|++|++.  +....+...+..|+.
T Consensus       190 ~~~~~~c~~~l~-~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        190 MYDSDRCKNSLH-YYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccCCccchhHH-HHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            23444444 444 22      56788999999999999999999999999984  444455555555444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=4.5e-25  Score=244.68  Aligned_cols=167  Identities=15%  Similarity=0.149  Sum_probs=156.9

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      +.++.++||.||..|+.++++.|+++|+|+|..|..|.||||+|+.+ |+.+++++|+++|+++|.+  |..|+||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadin~~--d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK-GYEDCVLVLLKHACNVHIR--DANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCCc--CCCCCCHHHHH
Confidence            45678999999999999999999999999999999999999999998 9999999999999999998  89999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010439           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~  173 (510)
                      +..|+.+++++|++.++..+  ...|.++||.|+.+|+.+++++|+++|++++  .+|.+|.|||| +|+..|+.+++++
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin--~~d~~G~TpLh-~A~~~g~~~iv~~  673 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD--SEDHQGATALQ-VAMAEDHVDMVRL  673 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCcHHHHHH
Confidence            99999999999999887654  3457799999999999999999999999999  89999999999 9999999999999


Q ss_pred             HhhCCCCCCCCCccc
Q 010439          174 VIPCGTANPSKPLRF  188 (510)
Q Consensus       174 Ll~~ga~~~~~~~~~  188 (510)
                      |+++|++++..+..+
T Consensus       674 Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        674 LIMNGADVDKANTDD  688 (823)
T ss_pred             HHHcCCCCCCCCCCC
Confidence            999999998887554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=2.4e-25  Score=194.43  Aligned_cols=180  Identities=19%  Similarity=0.146  Sum_probs=149.3

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~   92 (510)
                      .+.+|+++++.|+-.|+...+..+|.+|+..|..+.-+++|+++++.+ .+.+.+.+|.+.  .+|..  |..|.|||+|
T Consensus        92 t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq-l~L~~~~~~~~n--~VN~~--De~GfTpLiW  166 (296)
T KOG0502|consen   92 TDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ-LHLDVVDLLVNN--KVNAC--DEFGFTPLIW  166 (296)
T ss_pred             CCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH-HHHHHHHHHhhc--cccCc--cccCchHhHH
Confidence            466688888888888888888888888888888888888888888877 677776666655  46666  8888888888


Q ss_pred             HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (510)
Q Consensus        93 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~  172 (510)
                      |+.+|++.+|++||+.|+|+++..+...|+|++|...|..+||++||.++.|+|  ..|.+|-|||. +|++.|+.+|++
T Consensus       167 Aaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN--vyDwNGgTpLl-yAvrgnhvkcve  243 (296)
T KOG0502|consen  167 AAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN--VYDWNGGTPLL-YAVRGNHVKCVE  243 (296)
T ss_pred             HHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc--eeccCCCceee-eeecCChHHHHH
Confidence            888888888888888888888888888888888888888888888888888888  88888888888 888888888888


Q ss_pred             HHhhCCCCCCCCCccccccccccccccC
Q 010439          173 VVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (510)
Q Consensus       173 ~Ll~~ga~~~~~~~~~~~~l~~a~~~~~  200 (510)
                      .||..|++++..+..|..++..++.-+.
T Consensus       244 ~Ll~sGAd~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  244 SLLNSGADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             HHHhcCCCcccccccCCcHHHHHHHhhh
Confidence            8888888888888788777776665444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=2.8e-24  Score=192.06  Aligned_cols=145  Identities=19%  Similarity=0.185  Sum_probs=119.5

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHH---HHHHHHHcCCCcc
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN---VAKTLIELGANIN   78 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~---~v~~Ll~~ga~~n   78 (510)
                      ++++.+..+.++.++||+|++.|++    +++++|++.|++++.+|..|+||||+|+.. |+.+   ++++|+++|+++|
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~-g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWY-DRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHh-CccCHHHHHHHHHHcCCCCC
Confidence            4566667778888889999998888    566677788888888888899999999887 6544   4788899999998


Q ss_pred             ccCCC-CCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCC
Q 010439           79 AYRPG-GRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP  155 (510)
Q Consensus        79 ~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~  155 (510)
                      .+  + ..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++  .++..|.
T Consensus        88 ~~--d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~  162 (166)
T PHA02743         88 AR--ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD--DPLSIGL  162 (166)
T ss_pred             CC--CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcccCCc
Confidence            87  6 478899999999999999999885 788888888899999999999999999999999998888  5665553

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=1.6e-24  Score=234.64  Aligned_cols=222  Identities=23%  Similarity=0.178  Sum_probs=171.1

Q ss_pred             ccChhhhcCCchHHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      +.+.+..+..|.|+||+|+..| ..++...+++.|+++|..-..|.||||+|+.. |+.+++++|++.++..+..  ...
T Consensus       430 gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~-Gh~~~~~llle~~~~~~~~--~~~  506 (1143)
T KOG4177|consen  430 GASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQE-GHTEVVQLLLEGGANDNLD--AKK  506 (1143)
T ss_pred             CCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhcc-CCchHHHHhhhcCCccCcc--chh
Confidence            4556666777777777777777 66666677777777777777777777777765 7777777777777666654  566


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~  165 (510)
                      |.|+||.|...+...+++.++++|++++.++..|+||||.|+.+|+..+|++|+++|++++  .+++.|+|||| .|+..
T Consensus       507 ~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~--ak~~~G~TPLH-~Aa~~  583 (1143)
T KOG4177|consen  507 GLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN--AKDKLGYTPLH-QAAQQ  583 (1143)
T ss_pred             ccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc--ccCCCCCChhh-HHHHc
Confidence            7777777777777777777778888889999999999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehh
Q 010439          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (510)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~  239 (510)
                      |+.+|+.+|+++|+++|..+..+.++++.+...++......+.......     ...........|.+|..+.-
T Consensus       584 G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~-----~~~~~~~e~~~g~~p~~v~e  652 (1143)
T KOG4177|consen  584 GHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP-----AATDPVKENRKGAVPEDVAE  652 (1143)
T ss_pred             ChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc-----ccccchhhhhcccChhhHHH
Confidence            9999999999999999999999999999999888876665543332211     11112334445666766555

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=1e-23  Score=220.31  Aligned_cols=186  Identities=13%  Similarity=0.107  Sum_probs=158.5

Q ss_pred             cccChhhhcCCchHHHHH--HHHcCCHHHHHHHHH--------------------------------cCCCCcc------
Q 010439            6 NSMNQHQQRQSKDELLYQ--WVIAGDVDAIRALRS--------------------------------QGASLEW------   45 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~--------------------------------~g~~~~~------   45 (510)
                      .++++|.+|.+|.||||+  |...|+.|+|++|++                                +|+|+..      
T Consensus       224 ~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  303 (672)
T PHA02730        224 NNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIE  303 (672)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhh
Confidence            468899999999999995  555678999999999                                7888876      


Q ss_pred             --------------cCCCCCh---------------------HHHHHHHhC--CcHHHHHHHHHcCCCccccCCCCCCCh
Q 010439           46 --------------MDKEGKT---------------------PLIVACMDS--GLINVAKTLIELGANINAYRPGGRGGT   88 (510)
Q Consensus        46 --------------~d~~g~T---------------------pL~~A~~~~--~~~~~v~~Ll~~ga~~n~~~~d~~g~T   88 (510)
                                    .|..|.+                     .||.-...+  -+.+++++|+++||++|.   +..|+|
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~---k~~G~T  380 (672)
T PHA02730        304 GRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK---TTDNNY  380 (672)
T ss_pred             ccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc---CCCCCc
Confidence                          5667765                     677777653  368999999999999996   358999


Q ss_pred             HHHHHHHcCC----HHHHHHHHHCCC--CCccCCCCCCcHHHH---HHHcC---------CHHHHHHHHhcccccccccc
Q 010439           89 PLHHAAKRGL----EPTVRLLLSCGA--NALVRNDDCHTALGV---ARIKG---------HINVVRAIESHICYFCGWLR  150 (510)
Q Consensus        89 pLh~A~~~g~----~~~v~~Ll~~ga--d~~~~d~~g~TpL~~---A~~~g---------~~~~v~~Ll~~ga~~~~~~~  150 (510)
                      |||+|+..++    .+++++|+++|+  +++.+|..|.||||.   |...+         ..+++++|+++|++++  .+
T Consensus       381 pLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADIN--ak  458 (672)
T PHA02730        381 PLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDID--MI  458 (672)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchh--cc
Confidence            9999998875    899999999997  689999999999984   33232         2357999999999999  99


Q ss_pred             ccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCc-ccccccccccc
Q 010439          151 EFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPL-RFELVIYPSLQ  197 (510)
Q Consensus       151 d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~-~~~~~l~~a~~  197 (510)
                      |..|.|||| +|+..++.+++++|+++|++++.++. .+.++++.+..
T Consensus       459 D~~G~TPLh-~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        459 DNENKTLLY-YAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             CCCCCCHHH-HHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence            999999999 99999999999999999999999996 58899988765

>PHA02792 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.8e-24  Score=222.16  Aligned_cols=217  Identities=14%  Similarity=0.025  Sum_probs=167.5

Q ss_pred             cccChhhhcCCchHHHHHHHH-cCCHHHHHHHHHcCCCC------------------------------------cccCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVI-AGDVDAIRALRSQGASL------------------------------------EWMDK   48 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~~------------------------------------~~~d~   48 (510)
                      +++++|.++..|.++||+|+. .++.++|++||++|+++                                    |..|.
T Consensus        94 ~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  173 (631)
T PHA02792         94 KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDR  173 (631)
T ss_pred             cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCC
Confidence            467888888888888888865 68889999999888763                                    23456


Q ss_pred             CCChHHHHHHHhCC-------cHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcC--CHHHHHHHHH------------
Q 010439           49 EGKTPLIVACMDSG-------LINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG--LEPTVRLLLS------------  107 (510)
Q Consensus        49 ~g~TpL~~A~~~~~-------~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~------------  107 (510)
                      .|.||||+|+.. +       +.+++++|+.+|++++.+  |..|.||||+|+.+.  ..+++++|+.            
T Consensus       174 ~g~t~L~~~i~~-~s~~~~~~~~~v~k~Li~~g~~~~~~--d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l  250 (631)
T PHA02792        174 MGKTVLYYYIIT-RSQDGYATSLDVINYLISHEKEMRYY--TYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNIL  250 (631)
T ss_pred             CCCchHHHHHhh-CCcccccCCHHHHHHHHhCCCCcCcc--CCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHH
Confidence            688899998886 6       688899999999888887  778889999988766  4555555543            


Q ss_pred             -------------------------------------------------------------------------------C
Q 010439          108 -------------------------------------------------------------------------------C  108 (510)
Q Consensus       108 -------------------------------------------------------------------------------~  108 (510)
                                                                                                     +
T Consensus       251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~  330 (631)
T PHA02792        251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE  330 (631)
T ss_pred             HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence                                                                                           2


Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCC--CCHHHHHhhhcCCH---HHHHHHhhCCCCCCC
Q 010439          109 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG--PSFLEALAPQLMSR---KIWVVVIPCGTANPS  183 (510)
Q Consensus       109 gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g--~t~L~~~A~~~~~~---~~~~~Ll~~ga~~~~  183 (510)
                      |+++.  ...+...++.|+..|+.++|++|+++|++++  .+|.+|  .|||| +|......   +++++|+++|++++.
T Consensus       331 Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN--~kD~~g~~~TpLh-~A~~n~~~~v~~IlklLIs~GADIN~  405 (631)
T PHA02792        331 GATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVV--EDDDNIINIMPLF-PTLSIHESDVLSILKLCKPYIDDINK  405 (631)
T ss_pred             CCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchh--hhcCCCCChhHHH-HHHHhccHhHHHHHHHHHhcCCcccc
Confidence            22221  1234567888888999999999999999998  777775  68999 77665554   467888999999999


Q ss_pred             CCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439          184 KPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (510)
Q Consensus       184 ~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~  240 (510)
                      ++..+.+|++.++..+....+..|+        .+|++  ++.+|..|+|++++|..
T Consensus       406 kD~~G~TPLh~Aa~~~n~eivelLL--------s~GAD--IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        406 IDKHGRSILYYCIESHSVSLVEWLI--------DNGAD--INITTKYGSTCIGICVI  452 (631)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHH--------HCCCC--CCCcCCCCCCHHHHHHH
Confidence            9999999999999887765554433        34567  88899999999999873

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=8.6e-24  Score=226.27  Aligned_cols=204  Identities=13%  Similarity=0.056  Sum_probs=163.1

Q ss_pred             HHHHHHHHHcCCCCcccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHH----HHH
Q 010439           30 VDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEP----TVR  103 (510)
Q Consensus        30 ~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~--~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~----~v~  103 (510)
                      ++.||.||.+|..++.+|.+|+||||+|+..  .|+.++|++||++|++++..  +..|+||||+|+..|+.+    +++
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~--~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHK--NWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcccc--CCCCCCHHHHHHHcCChhHHHHHHH
Confidence            5788999999999999999999999998553  26799999999999999987  899999999999999854    567


Q ss_pred             HHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHH-hhhcCCHHHHHHHhhCCCCCC
Q 010439          104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL-APQLMSRKIWVVVIPCGTANP  182 (510)
Q Consensus       104 ~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~-A~~~~~~~~~~~Ll~~ga~~~  182 (510)
                      +|++.+..++..+.  .+++|+|+.+++.++|++|+++|++++  .+|.+|+||||.+ |+..++.+++++|+++|++++
T Consensus        90 ~Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin--~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917         90 ALLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLS--VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             HHHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCC--ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence            88887554555443  377888999999999999999999999  8999999999932 346789999999999999998


Q ss_pred             CCCcc---c-----------ccccccccc-----------ccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeee
Q 010439          183 SKPLR---F-----------ELVIYPSLQ-----------DVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKF  237 (510)
Q Consensus       183 ~~~~~---~-----------~~~l~~a~~-----------~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~  237 (510)
                      .++..   |           .++++.+..           ..+..        .++.++.+|++  ++..|..|.||||+
T Consensus       166 ~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~e--------iv~~Li~~Gad--vn~~d~~G~TpLh~  235 (661)
T PHA02917        166 YEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPE--------VVKCLINHGIK--PSSIDKNYCTALQY  235 (661)
T ss_pred             ccccccccccccccccccccccHHHHHHhhcccccccccccCcHH--------HHHHHHHCCCC--cccCCCCCCcHHHH
Confidence            65432   2           477777653           12322        23334455777  89999999999999


Q ss_pred             hhcCCC---ChHHHH
Q 010439          238 ASANEG---DKHQLQ  249 (510)
Q Consensus       238 a~~~~~---~~~ql~  249 (510)
                      |+.+..   +.++++
T Consensus       236 A~~~g~~~~eivk~L  250 (661)
T PHA02917        236 YIKSSHIDIDIVKLL  250 (661)
T ss_pred             HHHcCCCcHHHHHHH
Confidence            996554   344444

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=7.7e-25  Score=236.99  Aligned_cols=219  Identities=24%  Similarity=0.212  Sum_probs=193.4

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCC-cHHHHHHHHHcCCCccccCCCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGANINAYRPGG   84 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~-~~~~v~~Ll~~ga~~n~~~~d~   84 (510)
                      .+.+++.++.+|.||||.|+..++..+|+.++++|++++..+..|+||+|+|+.. | ..+++..++..|+++|+.  ..
T Consensus       396 ~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~-g~~~~~~~~l~~~g~~~n~~--s~  472 (1143)
T KOG4177|consen  396 AGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKK-GRYLQIARLLLQYGADPNAV--SK  472 (1143)
T ss_pred             ccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhc-ccHhhhhhhHhhcCCCcchh--cc
Confidence            3556778888888888888888888888888888888888888889999999887 6 788888888899999888  77


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhh
Q 010439           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (510)
Q Consensus        85 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~  164 (510)
                      .|.||||+|+..|+.+++.+|++.++..+.....|.|+||+|...++..+++.++++|++++  .++.+|.|||| .|+.
T Consensus       473 ~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~--~~~~r~~TpLh-~A~~  549 (1143)
T KOG4177|consen  473 QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVD--LRTGRGYTPLH-VAVH  549 (1143)
T ss_pred             ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCcee--hhcccccchHH-HHHh
Confidence            88999999999999999999998888888888888999999999999999999999999999  89999999999 9999


Q ss_pred             cCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (510)
Q Consensus       165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~  240 (510)
                      +|+.++|++|+++|+|++.++..+.+|++.++..++...+..|++.        |++  ++..|-.+.|||+++..
T Consensus       550 ~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~--------GA~--vna~d~~g~TpL~iA~~  615 (1143)
T KOG4177|consen  550 YGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH--------GAS--VNAADLDGFTPLHIAVR  615 (1143)
T ss_pred             cCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHc--------CCC--CCcccccCcchhHHHHH
Confidence            9999999999999999999999999999999999986666654444        446  88889999999999993

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=9.9e-25  Score=190.62  Aligned_cols=174  Identities=24%  Similarity=0.171  Sum_probs=157.2

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      |+...|..+..+++|+++++.+.+++++..+.+.  .+|..|++|.|||++|+.+ |++.+|++||+.|||+++.  .+.
T Consensus       118 N~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~-G~i~vV~fLL~~GAdp~~l--gk~  192 (296)
T KOG0502|consen  118 NGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK-GHIPVVQFLLNSGADPDAL--GKY  192 (296)
T ss_pred             ccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc-CchHHHHHHHHcCCChhhh--hhh
Confidence            4455677788899999999999999988777664  5788999999999999998 9999999999999999998  788


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~  165 (510)
                      ..|+|++|++.|..+||++||.++.|+|..|-+|-|||.||++.+|.++++.|++.|++++  ..+..|.+++. +|+..
T Consensus       193 resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~~md-lAVal  269 (296)
T KOG0502|consen  193 RESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYWIMD-LAVAL  269 (296)
T ss_pred             hhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCcHHH-HHHHh
Confidence            8899999999999999999999999999999999999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHHhhCCCCCCCCCccc
Q 010439          166 MSRKIWVVVIPCGTANPSKPLRF  188 (510)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~  188 (510)
                      |+. +++..|++.+....++...
T Consensus       270 Gyr-~Vqqvie~h~lkl~Q~~~~  291 (296)
T KOG0502|consen  270 GYR-IVQQVIEKHALKLCQDSEK  291 (296)
T ss_pred             hhH-HHHHHHHHHHHHHhhcccC
Confidence            998 8888887776665555333

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=3.4e-24  Score=217.40  Aligned_cols=220  Identities=23%  Similarity=0.184  Sum_probs=191.7

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      ...+.|.+|.+|.|+||.|+.+|+.+++++|++..+-++..|..|.+|||+|++. |+.+++++||.++..+|+.  ...
T Consensus        38 rsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~-g~~e~vkmll~q~d~~na~--~~e  114 (854)
T KOG0507|consen   38 RSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWN-GNLEIVKMLLLQTDILNAV--NIE  114 (854)
T ss_pred             CCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhc-CcchHHHHHHhcccCCCcc--ccc
Confidence            4456788899999999999999999999999999999999999999999999998 9999999999999999998  899


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc------ccccccCCCCHHH
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC------GWLREFYGPSFLE  159 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~------~~~~d~~g~t~L~  159 (510)
                      |.||||.|+.+||.+++.+|+.+|+|+-.+|+.+.|+|.+|++.|..++|+.|+.....+.      ...++..+-+|||
T Consensus       115 ~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH  194 (854)
T KOG0507|consen  115 NETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH  194 (854)
T ss_pred             CcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc
Confidence            9999999999999999999999999999999999999999999999999999998732221      1256777899999


Q ss_pred             HHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehh
Q 010439          160 ALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (510)
Q Consensus       160 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~  239 (510)
                       +|+++|+.++++.|++.|.+++... +..++++.+..-+....+..++...+        +  ..+.+..++|.|++..
T Consensus       195 -laakngh~~~~~~ll~ag~din~~t-~~gtalheaalcgk~evvr~ll~~gi--------n--~h~~n~~~qtaldil~  262 (854)
T KOG0507|consen  195 -LAAKNGHVECMQALLEAGFDINYTT-EDGTALHEAALCGKAEVVRFLLEIGI--------N--THIKNQHGQTALDIII  262 (854)
T ss_pred             -hhhhcchHHHHHHHHhcCCCccccc-ccchhhhhHhhcCcchhhhHHHhhcc--------c--cccccccchHHHHHHH
Confidence             9999999999999999999999877 44577777776666555555454544        4  5677888889888777


Q ss_pred             c
Q 010439          240 A  240 (510)
Q Consensus       240 ~  240 (510)
                      .
T Consensus       263 d  263 (854)
T KOG0507|consen  263 D  263 (854)
T ss_pred             h
Confidence            3

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=186.01  Aligned_cols=144  Identities=15%  Similarity=0.156  Sum_probs=131.0

Q ss_pred             cCCCCcccCCCCChHHHHHHHhCCcH----HHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHH---HHHHHHCCCC
Q 010439           39 QGASLEWMDKEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPT---VRLLLSCGAN  111 (510)
Q Consensus        39 ~g~~~~~~d~~g~TpL~~A~~~~~~~----~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~---v~~Ll~~gad  111 (510)
                      +|++++..+.++.++||+||.. |+.    +++++|++.|++++.+  |..|+||||+|+..|+.++   +++|+++|++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~-g~~~~l~~~~~~l~~~g~~~~~~--d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad   85 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRT-GNIYELMEVAPFISGDGHLLHRY--DHHGRQCTHMVAWYDRANAVMKIELLVNMGAD   85 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHc-CCHHHHHHHHHHHhhcchhhhcc--CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC
Confidence            5678888889999999999998 776    6677888999999988  8899999999999988654   8999999999


Q ss_pred             CccCC-CCCCcHHHHHHHcCCHHHHHHHHh-ccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccc
Q 010439          112 ALVRN-DDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRF  188 (510)
Q Consensus       112 ~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~  188 (510)
                      ++.++ ..|+||||+|+..++.+++++|+. .|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~tpL~-~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG--AINYQHETAYH-IAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            99998 589999999999999999999995 899999  89999999999 9999999999999999999998887654

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=3.6e-23  Score=185.77  Aligned_cols=131  Identities=22%  Similarity=0.276  Sum_probs=92.7

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHH------cCCCCcccCCCCChHHHHHHHhCCc----HHHHHHHHHcCCCcccc
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRS------QGASLEWMDKEGKTPLIVACMDSGL----INVAKTLIELGANINAY   80 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~d~~g~TpL~~A~~~~~~----~~~v~~Ll~~ga~~n~~   80 (510)
                      +.++..|.|+||+|+..|+.++|+.|+.      .|++++.+|..|+||||+|+.. |+    .+++++|+++|+++|.+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~-g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEK-HEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCC
Confidence            4556677777777777777777777643      2466777777777777777775 55    46777777777777766


Q ss_pred             CCCC-CCChHHHHHHHcCCHHHHHHHHH-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc
Q 010439           81 RPGG-RGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (510)
Q Consensus        81 ~~d~-~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  144 (510)
                        +. .|+||||+|+..++.+++++|+. .|++++.+|..|+||||+|+..++.+++++|++.++.
T Consensus        94 --~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         94 --EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             --CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence              53 67777777777777777777776 4777777777777777777777777777777766543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=1e-22  Score=210.62  Aligned_cols=181  Identities=14%  Similarity=0.063  Sum_probs=157.4

Q ss_pred             ChhhhcCCchHHHHHHHHcC-------CHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCC--cHHHHHHHHH-------
Q 010439            9 NQHQQRQSKDELLYQWVIAG-------DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG--LINVAKTLIE-------   72 (510)
Q Consensus         9 ~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~--~~~~v~~Ll~-------   72 (510)
                      ..+.++..|.||||+|+.++       +.++++.||++|++++.+|..|.||||+|+.+ .  ..|++++|++       
T Consensus       167 ~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~-~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        167 TTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDK-CDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             ccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHc-ccchHHHHHHHHhccccccc
Confidence            34678889999999999999       89999999999999999999999999999987 5  5666666664       


Q ss_pred             --------------------------------------------------------------------------------
Q 010439           73 --------------------------------------------------------------------------------   72 (510)
Q Consensus        73 --------------------------------------------------------------------------------   72 (510)
                                                                                                      
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                                                                                            


Q ss_pred             ----cCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCC--CcHHHHHHHcCCH---HHHHHHHhccc
Q 010439           73 ----LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC--HTALGVARIKGHI---NVVRAIESHIC  143 (510)
Q Consensus        73 ----~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g--~TpL~~A~~~g~~---~~v~~Ll~~ga  143 (510)
                          +|++++    ...+...+|.|+..|+.++|++|+++|+|++.+|..|  .||||+|......   +++++|+++|+
T Consensus       326 ~LId~Ga~~~----r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GA  401 (631)
T PHA02792        326 CMIDEGATLY----RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYID  401 (631)
T ss_pred             HHHHCCCccc----cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCC
Confidence                233322    1125677999999999999999999999999999875  6999998876654   46899999999


Q ss_pred             cccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccccccccccc
Q 010439          144 YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ  197 (510)
Q Consensus       144 ~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~  197 (510)
                      +++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+..
T Consensus       402 DIN--~kD~~G~TPLh-~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        402 DIN--KIDKHGRSILY-YCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             ccc--cccccCcchHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999  89999999999 9999999999999999999999999999999998864

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=8.6e-23  Score=226.50  Aligned_cols=151  Identities=21%  Similarity=0.134  Sum_probs=141.0

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      .++++|.+|.+|.||||+|+..|+.++|++|+++|+++|.+|.+|.||||+|+.. |+.+++++|++.++..+    ...
T Consensus       547 ~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~-g~~~iv~~L~~~~~~~~----~~~  621 (823)
T PLN03192        547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA-KHHKIFRILYHFASISD----PHA  621 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh-CCHHHHHHHHhcCcccC----ccc
Confidence            3578889999999999999999999999999999999999999999999999997 99999999999887766    446


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCC-CCHHHHHhhh
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG-PSFLEALAPQ  164 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g-~t~L~~~A~~  164 (510)
                      |.++||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+..|+.+++++|+++|++++  ..|..| .||+. ++..
T Consensus       622 ~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~--~~~~~g~~t~~~-l~~~  698 (823)
T PLN03192        622 AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD--KANTDDDFSPTE-LREL  698 (823)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CCCCCCCCCHHH-HHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999  888888 99998 5533

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.9e-22  Score=194.16  Aligned_cols=157  Identities=22%  Similarity=0.175  Sum_probs=135.7

Q ss_pred             hhhhcCCchH-HHHHHHHcCCHHHHHHHHHcCCCCcccC----CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCC
Q 010439           10 QHQQRQSKDE-LLYQWVIAGDVDAIRALRSQGASLEWMD----KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (510)
Q Consensus        10 ~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~d----~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~   84 (510)
                      ...+|..|.| +||.|+..|+.++|++|+++|+++|.++    ..|.||||+|+.. ++.+++++|+++|||+|..+ +.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~-~~~eivklLL~~GADVN~~~-~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDC-DNDDAAKLLIRYGADVNRYA-EE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcCccc-CC
Confidence            3456667665 5667777899999999999999999874    5899999999997 99999999999999999862 46


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhh
Q 010439           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (510)
Q Consensus        85 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~  164 (510)
                      .|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.+++.++...       ..+..+.+|++ ++  
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~--  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN-------EISNFYKHPKK-IL--  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC-------cccccccChhh-hh--
Confidence            799999999999999999999999999999999999999999999999888666532       24567788998 44  


Q ss_pred             cCCHHHHHHHhhCCC
Q 010439          165 LMSRKIWVVVIPCGT  179 (510)
Q Consensus       165 ~~~~~~~~~Ll~~ga  179 (510)
                       ++.+++++|+.++.
T Consensus       173 -~n~ei~~~Lish~v  186 (300)
T PHA02884        173 -INFDILKILVSHFI  186 (300)
T ss_pred             -ccHHHHHHHHHHHH
Confidence             46899999999987

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=9.3e-23  Score=200.58  Aligned_cols=174  Identities=28%  Similarity=0.318  Sum_probs=132.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHH
Q 010439           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEP  100 (510)
Q Consensus        21 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~  100 (510)
                      +.-|+..|+.+-|+.||..|+++|..+.+|.|+||-+|.- .+.+||++|+++|++||..  |..||||||.|+..|+..
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id-~~~e~v~~l~e~ga~Vn~~--d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACID-DNLEMVKFLVENGANVNAQ--DNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhc-ccHHHHHHHHHhcCCcccc--ccccCCcchhhcccccHH
Confidence            3344455666666666666666666666666666666664 5666666666666666665  566666666666666666


Q ss_pred             HHHHHHHCCCC-----------------------------------------------------------CccCCCCCCc
Q 010439          101 TVRLLLSCGAN-----------------------------------------------------------ALVRNDDCHT  121 (510)
Q Consensus       101 ~v~~Ll~~gad-----------------------------------------------------------~~~~d~~g~T  121 (510)
                      ++++|+.+|++                                                           .++.+..|-|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            66666665543                                                           3556667999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccC
Q 010439          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (510)
Q Consensus       122 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~  200 (510)
                      .||.|+.+|..++.++|+++|.+++  .+|.+|+|||| +|+.++..+.+++|+++|++++.....+++++-.+..+..
T Consensus       201 ~lHvAaa~Gy~e~~~lLl~ag~~~~--~~D~dgWtPlH-AAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~  276 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALLLQAGYSVN--IKDYDGWTPLH-AAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEEL  276 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHHhccCcc--cccccCCCccc-HHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhhH
Confidence            9999999999999999999999999  99999999999 9999999999999999999999999999998877765433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=3.7e-22  Score=220.14  Aligned_cols=225  Identities=16%  Similarity=0.075  Sum_probs=169.1

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCChHHH-HHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHH
Q 010439           15 QSKDELLYQWVIAGDVDAIRALRSQ--GASLEWMDKEGKTPLI-VACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (510)
Q Consensus        15 ~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~TpL~-~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh   91 (510)
                      ..++..|+.|++.|+.+.|+.++++  +.++|..|..|+|||| .|+. +++.+++++|+++|+    .  +..|.||||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~-~~~~eiv~lLl~~g~----~--~~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIE-NENLELTELLLNLSC----R--GAVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHh-cChHHHHHHHHhCCC----C--CCcChHHHH
Confidence            4678999999999999999999998  8999999999999999 5555 599999999999997    3  778999999


Q ss_pred             HHHHcC---CHHHHHHHHHCCCC------Cc----cCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccc-------
Q 010439           92 HAAKRG---LEPTVRLLLSCGAN------AL----VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-------  151 (510)
Q Consensus        92 ~A~~~g---~~~~v~~Ll~~gad------~~----~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-------  151 (510)
                      .|+..+   ...++.+++..+.+      ++    ..+..|.||||+|+.+|+.++|++|+++|++++  .++       
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~--~~~~~~~~~~  165 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP--ARACGDFFVK  165 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC--cCcCCchhhc
Confidence            999732   22334444444322      11    123569999999999999999999999999998  432       


Q ss_pred             -------cCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHH----HHHHHhhcCCCCCCCC
Q 010439          152 -------FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV----IALWKAKIDEPKFHQP  220 (510)
Q Consensus       152 -------~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i----~~l~~~~~~~~~~~~~  220 (510)
                             ..|.|||| +|+..++.+++++|+++|+|++.++..+.++++.+.........    .......+........
T Consensus       166 ~~~~~~~~~g~tpL~-~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~  244 (743)
T TIGR00870       166 SQGVDSFYHGESPLN-AAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLR  244 (743)
T ss_pred             CCCCCcccccccHHH-HHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Confidence                   35899999 99999999999999999999999999999999998876521110    0001111111111111


Q ss_pred             --CCceEEecCCCcceeeehhcC-CCChHHHH
Q 010439          221 --DPSLTIYDQATKIRYKFASAN-EGDKHQLQ  249 (510)
Q Consensus       221 --~~~~~~~d~~~~t~l~~a~~~-~~~~~ql~  249 (510)
                        ....++.|+.|.|||++|+.. +.+..+++
T Consensus       245 ~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       245 DSKELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             ChHhhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence              122367899999999999843 33444433

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=4.6e-22  Score=178.59  Aligned_cols=131  Identities=17%  Similarity=0.109  Sum_probs=120.3

Q ss_pred             cccCCCCChHHHHHHHhCCcHHHHHHHHH------cCCCccccCCCCCCChHHHHHHHcCC----HHHHHHHHHCCCCCc
Q 010439           44 EWMDKEGKTPLIVACMDSGLINVAKTLIE------LGANINAYRPGGRGGTPLHHAAKRGL----EPTVRLLLSCGANAL  113 (510)
Q Consensus        44 ~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~------~ga~~n~~~~d~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~  113 (510)
                      +.+|..|.||||+|+.. |+.+++++|+.      .|++++.+  |..|+||||+|+..|+    .+++++|+++|++++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~-g~~~~v~~l~~~~~~~~~ga~in~~--d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin   91 (169)
T PHA02741         15 AEKNSEGENFFHEAARC-GCFDIIARFTPFIRGDCHAAALNAT--DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN   91 (169)
T ss_pred             hccccCCCCHHHHHHHc-CCHHHHHHHHHHhccchhhhhhhcc--CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Confidence            45788999999999998 99999999864      36889988  8899999999999998    589999999999999


Q ss_pred             cCCC-CCCcHHHHHHHcCCHHHHHHHHh-ccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCC
Q 010439          114 VRND-DCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (510)
Q Consensus       114 ~~d~-~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~  180 (510)
                      .++. .|+||||+|+..++.+++++|++ .|++++  .+|.+|.|||| +|...++.+++++|++.++.
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~tpL~-~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH--FCNADNKSPFE-LAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCCHHH-HHHHCCCHHHHHHHHHHHHH
Confidence            9985 99999999999999999999997 599998  89999999999 99999999999999988754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.7e-22  Score=178.71  Aligned_cols=134  Identities=20%  Similarity=0.156  Sum_probs=108.4

Q ss_pred             cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCC--C-----CcccCCCCChHHHHHHHhCCcH---HHHHHHHHcCCCc
Q 010439            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA--S-----LEWMDKEGKTPLIVACMDSGLI---NVAKTLIELGANI   77 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~-----~~~~d~~g~TpL~~A~~~~~~~---~~v~~Ll~~ga~~   77 (510)
                      ...+.+|.+|.||||+|++.|+..  ++++.++.  +     ++.+|..|+||||+|+.. ++.   +++++|+++|+++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~-~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNP-DKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeeccc-CchhHHHHHHHHHHcCCCc
Confidence            345677888999999999999843  33332222  2     334688899999999987 665   4688899999999


Q ss_pred             cccCCC-CCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439           78 NAYRPG-GRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (510)
Q Consensus        78 n~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  146 (510)
                      |.+  + ..|+||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..|+.+++++|+++|++.+
T Consensus        85 n~~--~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         85 NGK--ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ccc--CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            987  6 489999999999999999999997 489999999999999999999999999999999988764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=6.7e-22  Score=185.11  Aligned_cols=160  Identities=18%  Similarity=0.220  Sum_probs=143.2

Q ss_pred             CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcC-CCccccCCCCCCChHHHHHHHc-----CCHHHHHHHHHCCCCCccC
Q 010439           42 SLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGRGGTPLHHAAKR-----GLEPTVRLLLSCGANALVR  115 (510)
Q Consensus        42 ~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g-a~~n~~~~d~~g~TpLh~A~~~-----g~~~~v~~Ll~~gad~~~~  115 (510)
                      -||.-|.+|+|+||||+.+ .++++|+.||+.| ++++.+  ++-|+||+|+++..     .+..+|..|+..| |+|++
T Consensus       260 vVNlaDsNGNTALHYsVSH-aNF~VV~~LLDSgvC~VD~q--NrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaK  335 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSH-ANFDVVSILLDSGVCDVDQQ--NRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAK  335 (452)
T ss_pred             HhhhhcCCCCeeeeeeecc-cchHHHHHHhccCccccccc--ccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchh
Confidence            3688999999999999999 8999999999998 799998  99999999999863     4678899998885 67776


Q ss_pred             C-CCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhC-CCCCCCCCcccccccc
Q 010439          116 N-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC-GTANPSKPLRFELVIY  193 (510)
Q Consensus       116 d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~l~  193 (510)
                      - ..|+|+||+|+..|+.++|+.||..|+|+|  ++|.+|.|+|+ +|+.+|+.||+++||.. +.|....|..+.+++.
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN--iQDdDGSTALM-CA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~  412 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGADVN--IQDDDGSTALM-CAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALS  412 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCCCc--cccCCccHHHh-hhhhhChHHHHHHHhccCcccceeecCCCchhhh
Confidence            5 579999999999999999999999999999  99999999999 99999999999999864 6888899999999999


Q ss_pred             ccccccChHHHHHHH
Q 010439          194 PSLQDVQPRAVIALW  208 (510)
Q Consensus       194 ~a~~~~~~~~i~~l~  208 (510)
                      .+.+.++......++
T Consensus       413 IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  413 IALEAGHREIAVMLY  427 (452)
T ss_pred             hHHhcCchHHHHHHH
Confidence            999988866655443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.86  E-value=2.7e-21  Score=213.29  Aligned_cols=197  Identities=15%  Similarity=0.073  Sum_probs=157.6

Q ss_pred             ccChhhhcCCchHHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCC------c
Q 010439            7 SMNQHQQRQSKDELLY-QWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGAN------I   77 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~--~~~~~~v~~Ll~~ga~------~   77 (510)
                      +.++|..|..|.|||| .|+.+++.+++++|+++|+    .+..|.||||.|+..  ++...++++++..+.+      +
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            5778888999999999 8889999999999999987    677899999999962  1222344444444422      1


Q ss_pred             ccc--CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCC--------------CCCCcHHHHHHHcCCHHHHHHHHhc
Q 010439           78 NAY--RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIESH  141 (510)
Q Consensus        78 n~~--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d--------------~~g~TpL~~A~~~g~~~~v~~Ll~~  141 (510)
                      +..  +.+..|.||||+|+.+|+.++|++|+++|++++.++              ..|.||||+|+..|+.+++++|+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence            111  113469999999999999999999999999998763              3589999999999999999999999


Q ss_pred             cccccccccccCCCCHHHHHhhhcC---------CHHHHHHHhhCCCCC-------CCCCccccccccccccccChHHHH
Q 010439          142 ICYFCGWLREFYGPSFLEALAPQLM---------SRKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAVI  205 (510)
Q Consensus       142 ga~~~~~~~d~~g~t~L~~~A~~~~---------~~~~~~~Ll~~ga~~-------~~~~~~~~~~l~~a~~~~~~~~i~  205 (510)
                      |+|++  .+|..|+|||| +|+..+         ...+.++++..+++.       +..+..+.+|++.+...++...+.
T Consensus       198 gadin--~~d~~g~T~Lh-~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~  274 (743)
T TIGR00870       198 PADIL--TADSLGNTLLH-LLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFR  274 (743)
T ss_pred             Ccchh--hHhhhhhHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHH
Confidence            99999  89999999999 888876         234566676666554       456778999999999998888777


Q ss_pred             HHHHh
Q 010439          206 ALWKA  210 (510)
Q Consensus       206 ~l~~~  210 (510)
                      .++..
T Consensus       275 lLL~~  279 (743)
T TIGR00870       275 LKLAI  279 (743)
T ss_pred             HHHHH
Confidence            66653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=7e-21  Score=160.65  Aligned_cols=143  Identities=22%  Similarity=0.218  Sum_probs=125.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHc
Q 010439           18 DELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~   96 (510)
                      .-.+.+|+..+.+..|+.||+..+ .+|.+|.+|+||||-|+.+ |+.+||+.|+..||+++++  ...||||||-||+.
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn-~h~div~~ll~~gAn~~a~--T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYN-GHLDIVHELLLSGANKEAK--TNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhc-CchHHHHHHHHccCCcccc--cccCccchhhhhcc
Confidence            456889999999999999999876 4899999999999999997 9999999999999999999  89999999999999


Q ss_pred             CCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHH-hccccccccccccCCCCHHHHHhhhcC
Q 010439           97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI-NVVRAIE-SHICYFCGWLREFYGPSFLEALAPQLM  166 (510)
Q Consensus        97 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~-~~v~~Ll-~~ga~~~~~~~d~~g~t~L~~~A~~~~  166 (510)
                      .+.+++.+||.+|+|+|+.....+||||+|+...+. ..+++|+ ..+.+..  .++..+.||+. +|-+.+
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg--~~nn~eeta~~-iARRT~  209 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG--LKNNLEETAFD-IARRTS  209 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh--hhcCccchHHH-HHHHhh
Confidence            999999999999999999999999999999987665 4455554 4445555  78889999999 776543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1.9e-21  Score=171.98  Aligned_cols=132  Identities=17%  Similarity=0.131  Sum_probs=113.0

Q ss_pred             CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC--C-----ccccCCCCCCChHHHHHHHcCCH---HHHHHHHHCCCCC
Q 010439           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGA--N-----INAYRPGGRGGTPLHHAAKRGLE---PTVRLLLSCGANA  112 (510)
Q Consensus        43 ~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga--~-----~n~~~~d~~g~TpLh~A~~~g~~---~~v~~Ll~~gad~  112 (510)
                      .+..|..|.||||+||.. |+  ++.+|+..+.  +     ++.+  |..|+||||+|+..|+.   +++++|+++|+++
T Consensus        10 ~~~~d~~g~tpLh~A~~~-g~--~~~l~~~~~~~~~~~~~~~~~~--d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736         10 ASEPDIEGENILHYLCRN-GG--VTDLLAFKNAISDENRYLVLEY--NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             HHhcCCCCCCHHHHHHHh-CC--HHHHHHHHHHhcchhHHHHHHh--cCCCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence            355788999999999998 76  3444443332  2     2234  78999999999999987   4689999999999


Q ss_pred             ccCC-CCCCcHHHHHHHcCCHHHHHHHHh-ccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCC
Q 010439          113 LVRN-DDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANP  182 (510)
Q Consensus       113 ~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~  182 (510)
                      +.++ ..|+||||+|+..|+.+++++|+. .|++++  .+|..|.|||| +|+..++.+++++|+.+|++.+
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n--~~~~~g~tpL~-~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME--ILNYAFKTPYY-VACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc--cccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC
Confidence            9998 499999999999999999999998 499999  89999999999 9999999999999999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=3.1e-20  Score=178.85  Aligned_cols=131  Identities=15%  Similarity=0.151  Sum_probs=115.4

Q ss_pred             cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCC--CCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCC-CCCC
Q 010439           44 EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCH  120 (510)
Q Consensus        44 ~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~  120 (510)
                      ..+|+.|.|++++++...|+.+++++|+++|+++|.++.  +..|.||||+|+..++.+++++|+++|+|++.++ ..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            347888888766555555899999999999999998731  4589999999999999999999999999999864 6899


Q ss_pred             cHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhC
Q 010439          121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (510)
Q Consensus       121 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~  177 (510)
                      ||||+|+..++.+++++|+++|++++  .+|..|.|||| +|+..++.+++.++...
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin--~kd~~G~TpL~-~A~~~~~~~~~~~~~~~  159 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADIN--IQTNDMVTPIE-LALMICNNFLAFMICDN  159 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHhCChhHHHHhcCC
Confidence            99999999999999999999999999  89999999999 99998888887666533

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=5.8e-21  Score=188.01  Aligned_cols=154  Identities=27%  Similarity=0.325  Sum_probs=142.3

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC-----
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-----   81 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~-----   81 (510)
                      +.+++..+.+|.|+||.++...+.++|++|+++|++||..|..|+||||.|+.- |+..++++|+.+|+++-...     
T Consensus        63 ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc-g~~~i~~~li~~gA~~~avNsdg~~  141 (527)
T KOG0505|consen   63 GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC-GYLNIVEYLIQHGANLLAVNSDGNM  141 (527)
T ss_pred             CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc-ccHHHHHHHHHhhhhhhhccCCCCC
Confidence            456788899999999999999999999999999999999999999999999986 99999999999998866542     


Q ss_pred             ----------------------------------------------------CCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 010439           82 ----------------------------------------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCG  109 (510)
Q Consensus        82 ----------------------------------------------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  109 (510)
                                                                          ++..|.|+||.|+.+|..++.++|+.+|
T Consensus       142 P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag  221 (527)
T KOG0505|consen  142 PYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAG  221 (527)
T ss_pred             ccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhc
Confidence                                                                1223899999999999999999999999


Q ss_pred             CCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhh
Q 010439          110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (510)
Q Consensus       110 ad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~  164 (510)
                      .+++++|.+||||||.|+..|+.++.++|+++|++++  .....|.||+. +|..
T Consensus       222 ~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d--~~t~~g~~p~d-v~de  273 (527)
T KOG0505|consen  222 YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMD--AKTKMGETPLD-VADE  273 (527)
T ss_pred             cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccc--hhhhcCCCCcc-chhh
Confidence            9999999999999999999999999999999999999  89999999999 6654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.82  E-value=9.2e-20  Score=185.45  Aligned_cols=208  Identities=22%  Similarity=0.198  Sum_probs=180.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcC-------------CCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCC
Q 010439           18 DELLYQWVIAGDVDAIRALRSQG-------------ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~g-------------~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~   84 (510)
                      .+-|..|++.|+++.|..||+..             ..+|..|.+|.|+||+|+.+ |+.+++++|+++.+-++..  |.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Ln-g~~~is~llle~ea~ldl~--d~   80 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLN-GQNQISKLLLDYEALLDLC--DT   80 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhc-CchHHHHHHhcchhhhhhh--hc
Confidence            46688899999999999999841             34677889999999999998 9999999999999999998  89


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhh
Q 010439           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (510)
Q Consensus        85 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~  164 (510)
                      .|.+|||+|+..|+.++++.||.++..+|+.+..|.||||.|+..||.++|.+|+++|++..  ++|..+.|+|. +|++
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~--i~nns~~t~ld-lA~q  157 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF--IRNNSKETVLD-LASR  157 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc--ccCcccccHHH-HHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999  99999999999 9999


Q ss_pred             cCCHHHHHHHhhCCCC--------CCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceee
Q 010439          165 LMSRKIWVVVIPCGTA--------NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYK  236 (510)
Q Consensus       165 ~~~~~~~~~Ll~~ga~--------~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~  236 (510)
                      .|..++++.|++...+        ...+++..-.++|.+.++++.+.+..++...+        +  ++...+. -|+||
T Consensus       158 fgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~--------d--in~~t~~-gtalh  226 (854)
T KOG0507|consen  158 FGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF--------D--INYTTED-GTALH  226 (854)
T ss_pred             hhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC--------C--ccccccc-chhhh
Confidence            9999999999876221        22455667889999999999888877665554        3  5554444 47888


Q ss_pred             ehhcCC
Q 010439          237 FASANE  242 (510)
Q Consensus       237 ~a~~~~  242 (510)
                      .|+.-.
T Consensus       227 eaalcg  232 (854)
T KOG0507|consen  227 EAALCG  232 (854)
T ss_pred             hHhhcC
Confidence            887433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2.3e-20  Score=169.59  Aligned_cols=155  Identities=23%  Similarity=0.250  Sum_probs=123.6

Q ss_pred             HHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHH
Q 010439           25 VIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVR  103 (510)
Q Consensus        25 ~~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~  103 (510)
                      |+.|+.-.|++-|+ ..-|+|.-|..|.+|||+||+. |+..+++.||..|+.+|..  +....||||+|+.+||.++|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaake-gh~aivemll~rgarvn~t--nmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKE-GHVAIVEMLLSRGARVNST--NMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhc-ccHHHHHHHHhcccccccc--cCCCCcchhhhhhcccHHHHH
Confidence            55666655654444 5567888888999999999986 8999999999999999987  666679999999999999999


Q ss_pred             HHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCC
Q 010439          104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPS  183 (510)
Q Consensus       104 ~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~  183 (510)
                      .||+..+|+|+.|..|.|||||||..|+..+.+-|+..|+.++  +.+++|.|||. .|...-...+.++--+.|.+++.
T Consensus        85 kll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~--icnk~g~tpld-kakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   85 KLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN--ICNKKGMTPLD-KAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee--ecccCCCCchh-hhchHHHHHHHHHHHHhCCCCCc
Confidence            9999999999999999999999999999999999999999888  88999999998 55443333444444466766664


Q ss_pred             CC
Q 010439          184 KP  185 (510)
Q Consensus       184 ~~  185 (510)
                      .+
T Consensus       162 ip  163 (448)
T KOG0195|consen  162 IP  163 (448)
T ss_pred             cc
Confidence            44

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=1e-19  Score=165.41  Aligned_cols=136  Identities=25%  Similarity=0.263  Sum_probs=122.4

Q ss_pred             cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCC
Q 010439            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (510)
                      -+.|.-|..|.+|||+|++.|+..+|+.||.+|+.+|..|.-..||||+|+.. ||.++|+.||+..+|+|+.  +.+|.
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah-ghrdivqkll~~kadvnav--nehgn  101 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH-GHRDIVQKLLSRKADVNAV--NEHGN  101 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc-ccHHHHHHHHHHhcccchh--hccCC
Confidence            34566788899999999999999999999999999999999999999999998 9999999999999999999  99999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (510)
Q Consensus        88 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  146 (510)
                      |||||||..|...+.+-|+..|+-+++.|++|.|||..|.-.-...+.+.-.++|.+++
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999998865443444555556676665

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=4.1e-19  Score=150.00  Aligned_cols=147  Identities=21%  Similarity=0.090  Sum_probs=124.0

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCC-ccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcC
Q 010439           52 TPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (510)
Q Consensus        52 TpL~~A~~~~~~~~~v~~Ll~~ga~-~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  130 (510)
                      --+.+|+.. +.+..|+.||+..++ +|.+  |.+|+||||.|+.+|+.+||+.|+..|++++.+...|+||||-|+..+
T Consensus        65 rl~lwaae~-nrl~eV~~lL~e~an~vNtr--D~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   65 RLLLWAAEK-NRLTEVQRLLSEKANHVNTR--DEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHHhh-ccHHHHHHHHHhcccccccc--ccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence            346788887 889999999988775 7877  999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhccccccccccccCCCCHHHHHhhhc-CCHHHHHHHh-hCCCCCCCCCccccccccccccccChHHH
Q 010439          131 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQL-MSRKIWVVVI-PCGTANPSKPLRFELVIYPSLQDVQPRAV  204 (510)
Q Consensus       131 ~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~-~~~~~~~~Ll-~~ga~~~~~~~~~~~~l~~a~~~~~~~~i  204 (510)
                      +.+++.+||++|+|++  +......|||| +|+.. +....+.+|+ ..+.+...+...+++++..+-+.+....+
T Consensus       142 N~~va~~LLqhgaDVn--A~t~g~ltpLh-laa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~l  214 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVN--AQTKGLLTPLH-LAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYL  214 (228)
T ss_pred             chhHHHHHHhccCccc--ccccccchhhH-HhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHH
Confidence            9999999999999999  88888899999 66655 4455566655 56777777887888888777655443333

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=1e-18  Score=139.29  Aligned_cols=89  Identities=36%  Similarity=0.517  Sum_probs=72.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHH
Q 010439           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEP  100 (510)
Q Consensus        21 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~  100 (510)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+.+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAEN-GNLEIVKLLLENGADINSQ--DKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHT-TTHHHHHHHHHTTTCTT-B--STTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHc-CCHHHHHHHHHhccccccc--CCCCCCHHHHHHHcCCHH
Confidence            7888888888888888888877766    78888888887 8888888888888888887  788888888888888888


Q ss_pred             HHHHHHHCCCCCccCC
Q 010439          101 TVRLLLSCGANALVRN  116 (510)
Q Consensus       101 ~v~~Ll~~gad~~~~d  116 (510)
                      ++++|+++|++++.+|
T Consensus        74 ~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCCCCCcC
Confidence            8888888888887765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=7.1e-18  Score=142.71  Aligned_cols=124  Identities=34%  Similarity=0.527  Sum_probs=104.3

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~   92 (510)
                      ++.+|.|+||+|+..|+.+++++|++++.+.+..+..|.||||+|+.. ++.+++++|++.|++++..  +..|.||+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~--~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEKGADVNAR--DKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCCCCHHHH
Confidence            456788888888888888888888888888778888888888888887 7788888888888877776  7788888888


Q ss_pred             HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 010439           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  139 (510)
Q Consensus        93 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  139 (510)
                      |+..++.+++++|+..+.+++..+..|.|||++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88888888888888888888888888888888888888888888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-18  Score=182.07  Aligned_cols=217  Identities=23%  Similarity=0.212  Sum_probs=186.3

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      ..+-+|+|-.|+..|+.|+|++|+.+|+++..+|+.|.+||.+|+-. ||..+|+.|+++.+++++.. |..+.|+|-+|
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaata-gh~tvV~~llk~ha~veaQs-drtkdt~lSla  831 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATA-GHITVVQDLLKAHADVEAQS-DRTKDTMLSLA  831 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhccc-CchHHHHHHHhhhhhhhhhc-ccccCceEEEe
Confidence            45568999999999999999999999999999999999999999985 99999999999999999986 89999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010439           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~  173 (510)
                      |..|..++|++||.+|++-..++...+|||.+|..-|++++|.+|+.+|++++...-.+.|-.||+ +|.++|+...++.
T Consensus       832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm-latmngh~~at~~  910 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM-LATMNGHQAATLS  910 (2131)
T ss_pred             cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh-hhhhccccHHHHH
Confidence            999999999999999999999999999999999999999999999999999985455678999999 9999999999999


Q ss_pred             HhhCCCCCCCC-CccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCCC
Q 010439          174 VIPCGTANPSK-PLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  243 (510)
Q Consensus       174 Ll~~ga~~~~~-~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~~  243 (510)
                      |++.|.|+|.. ..+.++++-.+.-.+....+..|+....        +  +...-+.|-|||..++....
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~a--------n--vehRaktgltplme~AsgGy  971 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQA--------N--VEHRAKTGLTPLMEMASGGY  971 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcchHHHHHHHHhh--------h--hhhhcccCCcccchhhcCCc
Confidence            99999999853 3455667777766666666666554332        2  44445566777776664333

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=6.7e-18  Score=174.28  Aligned_cols=164  Identities=21%  Similarity=0.226  Sum_probs=143.3

Q ss_pred             hhhhcCCchHHHHHHHH---cCCHHHHHHHHHcCCC----Ccc-cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC
Q 010439           10 QHQQRQSKDELLYQWVI---AGDVDAIRALRSQGAS----LEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR   81 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~---~g~~~~v~~Ll~~g~~----~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~   81 (510)
                      .+.+...|+|+||.|..   .++.++++.||+.-..    +-. ....|+||||+|+.+ .+.++|++||+.|||++++-
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~-~~~~~V~lLl~~gADV~aRa  214 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVN-RDAELVRLLLAAGADVHARA  214 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHh-ccHHHHHHHHHcCCchhhHh
Confidence            34567889999999997   3667999999995322    111 235799999999998 99999999999999999852


Q ss_pred             ------C-C--------------CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 010439           82 ------P-G--------------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  140 (510)
Q Consensus        82 ------~-d--------------~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~  140 (510)
                            + |              ..|..||-+||.-++.+++++|+++|+|++++|.+|+|.||..+..-..++-.++++
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~  294 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE  294 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHh
Confidence                  0 1              137899999999999999999999999999999999999999999988999999999


Q ss_pred             cccc--ccccccccCCCCHHHHHhhhcCCHHHHHHHhhC
Q 010439          141 HICY--FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (510)
Q Consensus       141 ~ga~--~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~  177 (510)
                      +|++  ..  .+|..|.|||. +|++.|+.++.+.+++.
T Consensus       295 ~ga~~l~~--v~N~qgLTPLt-LAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  295 LGANALEH--VRNNQGLTPLT-LAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCcccc--ccccCCCChHH-HHHHhhhHHHHHHHHHh
Confidence            9999  66  89999999999 99999999999999987

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=1.4e-17  Score=132.78  Aligned_cols=89  Identities=35%  Similarity=0.485  Sum_probs=77.6

Q ss_pred             HHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHH
Q 010439           54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  133 (510)
Q Consensus        54 L~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~  133 (510)
                      ||+||.+ |+.+++++|++.+.+++.      |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus         1 L~~A~~~-~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQN-GNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHT-TTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHc-CCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            7899987 999999999998877763      788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccccccccc
Q 010439          134 VVRAIESHICYFCGWLRE  151 (510)
Q Consensus       134 ~v~~Ll~~ga~~~~~~~d  151 (510)
                      ++++|+++|++++  .+|
T Consensus        74 ~~~~Ll~~g~~~~--~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVN--IRN   89 (89)
T ss_dssp             HHHHHHHTTT-TT--SS-
T ss_pred             HHHHHHHcCCCCC--CcC
Confidence            9999999999887  543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=5.5e-17  Score=137.22  Aligned_cols=125  Identities=35%  Similarity=0.475  Sum_probs=117.5

Q ss_pred             ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHH
Q 010439           45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (510)
Q Consensus        45 ~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~  124 (510)
                      .+|.+|.||||+|+.. ++.+++++|++.|.+.+..  +..|.||||+|+..+..+++++|++.|++++..+..|.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~-~~~~~i~~li~~~~~~~~~--~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASN-GHLEVVKLLLENGADVNAK--DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            4567899999999998 9999999999999998777  889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (510)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll  175 (510)
                      +|+..++.+++++|++++.+++  ..+..|.||++ +|...++.+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADVN--ARDKDGRTPLH-LAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhcCCHHHHHHhC
Confidence            9999999999999999998888  78999999999 999999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.72  E-value=7.1e-18  Score=176.46  Aligned_cols=219  Identities=20%  Similarity=0.181  Sum_probs=154.6

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      +.|+..+|+.|.+||.+|+..||..+|+.||++-++++.. |+.+.|+|-+||. +|..++|++||.+|++-..+  +..
T Consensus       780 ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs-ggr~~vvelLl~~gankehr--nvs  856 (2131)
T KOG4369|consen  780 GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS-GGRTRVVELLLNAGANKEHR--NVS  856 (2131)
T ss_pred             cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC-CCcchHHHHHHHhhcccccc--chh
Confidence            5778888888888888888888888888888887777763 5677777777776 47777777777777766665  556


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCC--CCCCcHHHHHHHcCCHHHHHHHHhcccccccc---------------
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRN--DDCHTALGVARIKGHINVVRAIESHICYFCGW---------------  148 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d--~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~---------------  148 (510)
                      .+|||-+|...|..++|+.||.+|+++|.+.  +.|-.||++|..+||...++.|++.|.|+|..               
T Consensus       857 DytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq  936 (2131)
T KOG4369|consen  857 DYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ  936 (2131)
T ss_pred             hcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecccc
Confidence            6666666666666666666666666665443  34556666666655555555555555444420               


Q ss_pred             -----------------ccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCc--cccccccccccccChHHHHHHHH
Q 010439          149 -----------------LREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPL--RFELVIYPSLQDVQPRAVIALWK  209 (510)
Q Consensus       149 -----------------~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~--~~~~~l~~a~~~~~~~~i~~l~~  209 (510)
                                       .+-+.|.|||+ -++..|..++-++||..|+|.+..+.  ...+++.+.+..++...+..++ 
T Consensus       937 gr~evv~lLLa~~anvehRaktgltplm-e~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~ll- 1014 (2131)
T KOG4369|consen  937 GRPEVVFLLLAAQANVEHRAKTGLTPLM-EMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLL- 1014 (2131)
T ss_pred             CcchHHHHHHHHhhhhhhhcccCCcccc-hhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhh-
Confidence                             56677888888 78888888888888888888876543  4467777777777766655422 


Q ss_pred             hhcCCCCCCCCCCceEEecCCCcceeeehh
Q 010439          210 AKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (510)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~  239 (510)
                               ..|..+.+.++.|.|+|-+++
T Consensus      1015 ---------n~~atv~v~NkkG~T~Lwla~ 1035 (2131)
T KOG4369|consen 1015 ---------NGDATVRVPNKKGCTVLWLAS 1035 (2131)
T ss_pred             ---------CCccceecccCCCCcccchhc
Confidence                     224458888999999988776

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=3.9e-16  Score=161.39  Aligned_cols=125  Identities=26%  Similarity=0.273  Sum_probs=117.3

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccC-----------------------CCCChHHHHHHHhCCcHHHHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD-----------------------KEGKTPLIVACMDSGLINVAKTL   70 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-----------------------~~g~TpL~~A~~~~~~~~~v~~L   70 (510)
                      ...|.||||+|+.+.+.++|++||+.||||+.+-                       ..|..||-+||.. ++.||+++|
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~-nq~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT-NQPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHc-CCHHHHHHH
Confidence            3569999999999999999999999999997541                       2478999999997 999999999


Q ss_pred             HHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCC--CccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 010439           71 IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN--ALVRNDDCHTALGVARIKGHINVVRAIESH  141 (510)
Q Consensus        71 l~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  141 (510)
                      +++|||++++  |..|+|.||..+..-..++.+++|++|++  ...+|+.|.|||.+|+..|..++.+.+++.
T Consensus       260 l~~gAd~~aq--DS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  260 LAHGADPNAQ--DSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCCCCcc--ccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999  99999999999999999999999999999  899999999999999999999999999998

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=1.4e-15  Score=142.74  Aligned_cols=129  Identities=29%  Similarity=0.362  Sum_probs=99.5

Q ss_pred             cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCC-----HHHHHHHHHCCC---CCccC
Q 010439           44 EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL-----EPTVRLLLSCGA---NALVR  115 (510)
Q Consensus        44 ~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~-----~~~v~~Ll~~ga---d~~~~  115 (510)
                      ...+..+.+++|.++.. +..+++++|+..|++++.+  +..|.||||+|+..++     .+++++|++.|+   +.+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          67 AARDLDGRLPLHSAASK-GDDKIVKLLLASGADVNAK--DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccCCccccCHHHHHHHc-CcHHHHHHHHHcCCCcccc--cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            34555677888888776 7777777888888888776  7778888888888877     788888888877   55555


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCC
Q 010439          116 NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (510)
Q Consensus       116 d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~g  178 (510)
                      |..|+||||+|+..|+.+++++|++.|++++  .++..|.|+++ .|...++.+++..++..+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALD-PAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchh-hhcccchHHHHHHHHhcC
Confidence            7788888888888888888888888888777  67777888888 788888888888777765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=1e-15  Score=115.77  Aligned_cols=103  Identities=29%  Similarity=0.390  Sum_probs=74.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcC
Q 010439           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g   97 (510)
                      ..-++|++++|.++.||..+..|.++|.. ..|+||||||+-. |+.+++++|+..|++++.+  |+.|-|||.-|+..|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~-GQl~ilefli~iGA~i~~k--DKygITPLLsAvwEG   78 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADY-GQLSILEFLISIGANIQDK--DKYGITPLLSAVWEG   78 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhc-chHHHHHHHHHhccccCCc--cccCCcHHHHHHHHh
Confidence            34567777777777777777777666654 3677777777776 7777777777777777766  777777777777777


Q ss_pred             CHHHHHHHHHCCCCCccCCCCCCcHHH
Q 010439           98 LEPTVRLLLSCGANALVRNDDCHTALG  124 (510)
Q Consensus        98 ~~~~v~~Ll~~gad~~~~d~~g~TpL~  124 (510)
                      |.++|++||..|+|-..+..+|.+.+.
T Consensus        79 H~~cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             hHHHHHHHHHcCcccceeCCCchhHHh
Confidence            777777777777776666666655443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.62  E-value=3.2e-15  Score=113.18  Aligned_cols=102  Identities=26%  Similarity=0.292  Sum_probs=93.7

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCC
Q 010439           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (510)
Q Consensus        52 TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  131 (510)
                      --.++++++ |.++-|+..+..|.++|..   ..|++|||||+-+|..+++++|+..|++++.+|+.|-|||.-|+..||
T Consensus         4 ~~~~W~vkN-G~~DeVk~~v~~g~nVn~~---~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKN-GEIDEVKQSVNEGLNVNEI---YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhcc-CcHHHHHHHHHccccHHHH---hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhh
Confidence            346788887 9999999999999999865   589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccccccccccCCCCHHH
Q 010439          132 INVVRAIESHICYFCGWLREFYGPSFLE  159 (510)
Q Consensus       132 ~~~v~~Ll~~ga~~~~~~~d~~g~t~L~  159 (510)
                      .++|++||+.|++..  .+..+|.+.+.
T Consensus        80 ~~cVklLL~~GAdrt--~~~PdG~~~~e  105 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRT--IHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHHcCcccc--eeCCCchhHHh
Confidence            999999999999988  77888888777

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=1.8e-14  Score=135.14  Aligned_cols=129  Identities=35%  Similarity=0.406  Sum_probs=110.5

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCc-----HHHHHHHHHcCC---CccccCC
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-----INVAKTLIELGA---NINAYRP   82 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~-----~~~v~~Ll~~ga---~~n~~~~   82 (510)
                      ...+..+.+++|.++..+..+++++|+..|++++.+|..|.||||+|+.. ++     .+++++|++.|+   +.+.+  
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~ll~~g~~~~~~~~~--  143 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN-GNPPEGNIEVAKLLLEAGADLDVNNLR--  143 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhc-CCcccchHHHHHHHHHcCCCCCCcccc--
Confidence            34455678889999999999998889999988888888999999999887 77     899999999988   45544  


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcc
Q 010439           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (510)
Q Consensus        83 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  142 (510)
                      |..|+||||+|+..|+.+++++|++.|++++.++..|.|++++|+..++.++++.|+..+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            888899999999999889999999999988888888999999999999999988888876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.58  E-value=1.4e-14  Score=132.22  Aligned_cols=125  Identities=31%  Similarity=0.364  Sum_probs=115.6

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHH
Q 010439           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (510)
Q Consensus        15 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~   94 (510)
                      ..-..+|.-++..|+.+....||+---.+|.+|..|+|+|+.|+.+ |+.+++++||+.|+|+|... +..++||||+|+
T Consensus        10 d~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAayk-Gnl~~v~lll~~gaDvN~~q-hg~~YTpLmFAA   87 (396)
T KOG1710|consen   10 DAPKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYK-GNLTLVELLLELGADVNDKQ-HGTLYTPLMFAA   87 (396)
T ss_pred             cchhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhc-CcHHHHHHHHHhCCCcCccc-ccccccHHHHHH
Confidence            3457899999999999999999997667899999999999999998 99999999999999999863 778999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 010439           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (510)
Q Consensus        95 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  141 (510)
                      ..|+.++.++||+.|+.....|.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        88 LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999999999999999999999999999999877544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=3e-14  Score=154.05  Aligned_cols=106  Identities=32%  Similarity=0.432  Sum_probs=99.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCC
Q 010439           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (510)
Q Consensus        19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~   98 (510)
                      ..||.|+..|+.+.|++|+++|+++|.+|..|.||||+|+.+ |+.+++++|+++|++++.+  |..|+||||+|+..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~-g~~eiv~~LL~~Gadvn~~--d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLL--DKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCc
Confidence            468999999999999999999999999999999999999997 9999999999999999998  8999999999999999


Q ss_pred             HHHHHHHHHC-------CCCCccCCCCCCcHHHHHH
Q 010439           99 EPTVRLLLSC-------GANALVRNDDCHTALGVAR  127 (510)
Q Consensus        99 ~~~v~~Ll~~-------gad~~~~d~~g~TpL~~A~  127 (510)
                      .+++++|+++       |++++..+..|.+|+..+.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999998       8888888888888877655

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=3.4e-14  Score=153.58  Aligned_cols=103  Identities=29%  Similarity=0.298  Sum_probs=95.9

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCC
Q 010439           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (510)
Q Consensus        52 TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  131 (510)
                      +.||.|+.. |+.+++++|+++|+++|.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus        84 ~~L~~aa~~-G~~~~vk~LL~~Gadin~~--d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAAS-GDAVGARILLTGGADPNCR--DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence            358899987 9999999999999999998  8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc-------cccccccccccCCCCHHH
Q 010439          132 INVVRAIESH-------ICYFCGWLREFYGPSFLE  159 (510)
Q Consensus       132 ~~~v~~Ll~~-------ga~~~~~~~d~~g~t~L~  159 (510)
                      .+++++|+++       |++.+  ..+..|.+++.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~--~~~~~g~~~~~  193 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAK--PDSFTGKPPSL  193 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCC--ccccCCCCccc
Confidence            9999999999       78777  67777777766

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.4e-15  Score=100.27  Aligned_cols=54  Identities=41%  Similarity=0.965  Sum_probs=49.9

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhc-cCCccccccccccceeEeeeC
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRLYTV  510 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~i~~~  510 (510)
                      .+|.||+|.+.+.|+.-|||++.|++|..++++ ..+.||+||++|..+|+.|..
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s   62 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS   62 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence            589999999999999999999999999999988 456899999999999998863

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.5e-13  Score=134.84  Aligned_cols=91  Identities=33%  Similarity=0.434  Sum_probs=45.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCH
Q 010439           20 LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE   99 (510)
Q Consensus        20 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~   99 (510)
                      .|.-|+..|.+++|+..+..=-|+..-|..|.|+||-|+.. ||++||++||+.|+|+|+.  |.+||||||.|+..+++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa-ghyeIVkFLi~~ganVNa~--DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICA-GHYEIVKFLIEFGANVNAA--DSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc-chhHHHHHHHhcCCcccCc--cCCCCchhhhhhhcCch
Confidence            34444455555555555544444444445555555555543 5555555555555555554  45555555555555555


Q ss_pred             HHHHHHHHCCCCCc
Q 010439          100 PTVRLLLSCGANAL  113 (510)
Q Consensus       100 ~~v~~Ll~~gad~~  113 (510)
                      .+++.|+++|+-+.
T Consensus       630 ~~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  630 PMCKQLVESGAAVF  643 (752)
T ss_pred             HHHHHHHhccceEE
Confidence            55555555554443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=5.1e-14  Score=101.04  Aligned_cols=55  Identities=42%  Similarity=0.501  Sum_probs=18.2

Q ss_pred             HHHcC-CCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           36 LRSQG-ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        36 Ll~~g-~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      ||++| +++|.+|..|+||||+||.+ |+.+++++|++.|+|++.+  |..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~-g~~~~v~~Ll~~g~d~~~~--d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARY-GHSEVVRLLLQNGADPNAK--DKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHH-T-HHHHHHHHHCT--TT-----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHc-CcHHHHHHHHHCcCCCCCC--cCCCCCHHHhC
Confidence            34444 45555555555555555554 5555555555555555555  55555555554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=5.4e-14  Score=100.92  Aligned_cols=55  Identities=45%  Similarity=0.631  Sum_probs=29.1

Q ss_pred             HHHcC-CCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q 010439           70 LIELG-ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  126 (510)
Q Consensus        70 Ll~~g-a~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A  126 (510)
                      ||++| +++|..  |..|.||||+|+.+|+.+++++|++.|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~--d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQ--DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT-----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCc--CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 777877  78888888888888888888888888888888888888888876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=9.1e-13  Score=120.42  Aligned_cols=120  Identities=23%  Similarity=0.224  Sum_probs=109.6

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC-CCCCCcHHHHHHH
Q 010439           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR-NDDCHTALGVARI  128 (510)
Q Consensus        50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~g~TpL~~A~~  128 (510)
                      -..||.-++-+ |..+-+..||..--++|.+  |..|+|+|+.|+..|+.++|++||+.|+|+|.. +..++||||+|+.
T Consensus        12 ~~~~Lle~i~K-ndt~~a~~LLs~vr~vn~~--D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDK-NDTEAALALLSTVRQVNQR--DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHcc-CcHHHHHHHHHHhhhhhcc--CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            46889999987 8899999999876668988  899999999999999999999999999999864 5678999999999


Q ss_pred             cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (510)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll  175 (510)
                      .|+.++.++|++.|+...  ..|.-|+|+-. +|+.-|+.++|.++-
T Consensus        89 SGn~dvcrllldaGa~~~--~vNsvgrTAaq-mAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMY--LVNSVGRTAAQ-MAAFVGHHECVAIIN  132 (396)
T ss_pred             cCCchHHHHHHhccCccc--cccchhhhHHH-HHHHhcchHHHHHHh
Confidence            999999999999999998  88999999999 999999999998664

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=2.9e-13  Score=96.54  Aligned_cols=54  Identities=28%  Similarity=0.449  Sum_probs=25.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHH
Q 010439           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI   71 (510)
Q Consensus        17 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll   71 (510)
                      |.|+||+|++.|+.+++++|+++|+++|.+|.+|+||||+|+.. |+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~-g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKN-GNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHT-T-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-cCHHHHHHHC
Confidence            34555555555555555555555555555555555555555554 5555555553

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=3.7e-13  Score=95.96  Aligned_cols=53  Identities=40%  Similarity=0.596  Sum_probs=23.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI  138 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~L  138 (510)
                      |+||||+|++.|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34445555555555555555544444444444455555555555555544444

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=1.4e-12  Score=128.10  Aligned_cols=118  Identities=17%  Similarity=0.114  Sum_probs=102.5

Q ss_pred             HHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHH
Q 010439           54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  133 (510)
Q Consensus        54 L~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~  133 (510)
                      |.-|+.. |.+|+|+..+..--|+..-  +..|.|+||-|+..||.+||++|++.|+++|..|.+||||||+|+..+++.
T Consensus       554 LLDaaLe-GEldlVq~~i~ev~DpSqp--NdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALE-GELDLVQRIIYEVTDPSQP--NDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhc-chHHHHHHHHHhhcCCCCC--CccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            3446666 9999999999887788776  889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccccccccccCCCCHHHHHh--hhcCCHHHHHHHhh
Q 010439          134 VVRAIESHICYFCGWLREFYGPSFLEALA--PQLMSRKIWVVVIP  176 (510)
Q Consensus       134 ~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A--~~~~~~~~~~~Ll~  176 (510)
                      +++.|++.|+-+.. .+-.++.|+.. -+  ...|+..|.+||-.
T Consensus       631 ~ckqLVe~GaavfA-sTlSDmeTa~e-KCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  631 MCKQLVESGAAVFA-STLSDMETAAE-KCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHhccceEEe-eecccccchhh-hcchhhhhHHHHHHHHHH
Confidence            99999999988873 34456788887 44  34688899999863

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.31  E-value=1.2e-12  Score=91.43  Aligned_cols=49  Identities=37%  Similarity=0.956  Sum_probs=42.6

Q ss_pred             ccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccce
Q 010439          456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  504 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  504 (510)
                      +..|.||++.+.+++++||||.++|..|+.++....++||+||++|.++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV   50 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence            3689999999999999999999559999999988778999999999764

...

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3.9e-12  Score=116.03  Aligned_cols=51  Identities=37%  Similarity=0.959  Sum_probs=48.9

Q ss_pred             ccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439          456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  510 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~  510 (510)
                      ...|.||||.+++.+|++|||++.|..|.++|..    ||+||+.|.++++||.|
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~e----CPICRqyi~rvvrif~~  350 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNE----CPICRQYIVRVVRIFRV  350 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccccc----CchHHHHHHHHHhhhcC
Confidence            6799999999999999999999999999999986    99999999999999986

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=2e-11  Score=116.04  Aligned_cols=56  Identities=29%  Similarity=0.866  Sum_probs=51.6

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeee
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  509 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~  509 (510)
                      ++..+|+||+...++.+++||+|.+.|..|++.+.-+..+||+||++|.+.+.||.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            44579999999999999999999999999999999777889999999999999874

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.93  E-value=1.1e-09  Score=96.56  Aligned_cols=54  Identities=26%  Similarity=0.807  Sum_probs=45.2

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhcc----------------CCccccccccccc--eeEee
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK----------------KGDCPVCRTKINQ--VIRLY  508 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~----------------~~~Cp~Cr~~i~~--~~~i~  508 (510)
                      ++...|.||++...+++..+|||.| |+.|+..|...                ..+||+||.+|..  .+.||
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            3457899999999999999999999 99999988531                2479999999964  66666

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=6.6e-10  Score=102.41  Aligned_cols=48  Identities=35%  Similarity=0.938  Sum_probs=44.1

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      ....|++|+|...++...||||.| |+.|+..|...+..||+||.++..
T Consensus       238 a~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCC
Confidence            336899999999999999999999 999999999888899999999863

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.2e-09  Score=97.80  Aligned_cols=56  Identities=32%  Similarity=0.831  Sum_probs=48.7

Q ss_pred             CCcccccccccccccceEEeCCCCccchHHhHHHHhccC---Ccccccccccc--ceeEeee
Q 010439          453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN--QVIRLYT  509 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~Cp~Cr~~i~--~~~~i~~  509 (510)
                      ++....|.||+|..+++|+..|||.| ||.|+-+|....   +.||+|+..|.  ++|.||-
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            45567999999999999999999999 999999998753   36999999885  6888884

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2.9e-09  Score=90.99  Aligned_cols=53  Identities=34%  Similarity=0.855  Sum_probs=44.6

Q ss_pred             cccccccccccccce--EEeCCCCccchHHhHHHHhccCCcccccccccc--ceeEee
Q 010439          455 SSSSCVICWEAPVEG--ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  508 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~--~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~i~  508 (510)
                      ....|+|||+.....  +...|||+| |..|++...+...+||+||+.|+  ++++||
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~  186 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY  186 (187)
T ss_pred             cccCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence            337899999986444  457999999 99999999988889999998886  588887

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.89  E-value=9.7e-10  Score=113.67  Aligned_cols=99  Identities=19%  Similarity=0.251  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHH-cCCC-CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHH
Q 010439           28 GDVDAIRALRS-QGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL  105 (510)
Q Consensus        28 g~~~~v~~Ll~-~g~~-~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~L  105 (510)
                      +..+-++-+++ .+.+ .|++|..|+|+||+|+.. +..+++++||++|+|++.+| ...|+||||.|+.+|+++++-+|
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~-~k~~~l~wLlqhGidv~vqD-~ESG~taLHRaiyyG~idca~lL  105 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSE-NKNSFLRWLLQHGIDVFVQD-EESGYTALHRAIYYGNIDCASLL  105 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHhhccceeeeeecc-chhHHHHHHHhcCceeeecc-ccccchHhhHhhhhchHHHHHHH
Confidence            33334554444 3322 577899999999999987 88999999999999999995 56799999999999999999999


Q ss_pred             HHCCCCCccCCCCCCcHHHHHHH
Q 010439          106 LSCGANALVRNDDCHTALGVARI  128 (510)
Q Consensus       106 l~~gad~~~~d~~g~TpL~~A~~  128 (510)
                      |++|+.+.++|++|..||.+-++
T Consensus       106 L~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  106 LSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HhcCCceEEecccCCCHHHHHhh
Confidence            99999999999999999998776

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.87  E-value=8.1e-09  Score=101.29  Aligned_cols=100  Identities=27%  Similarity=0.344  Sum_probs=85.1

Q ss_pred             cccCCCCChH------HHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCC
Q 010439           44 EWMDKEGKTP------LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND  117 (510)
Q Consensus        44 ~~~d~~g~Tp------L~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~  117 (510)
                      -.+|.+|.|.      ||-.++. |+.+..-.||..||++|+.. -..|.||||.|++.|...-+++|+-+|+|++..|.
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt-~nlet~LRll~lGA~~N~~h-pekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~  198 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRT-GNLETCLRLLSLGAQANFFH-PEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS  198 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhc-ccHHHHHHHHHcccccCCCC-cccCCchhHHHHhccchhhhhHHhhccCCCCCCCC
Confidence            3456666554      6777765 99999888999999999986 35799999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccccc
Q 010439          118 DCHTALGVARIKGHINVVRAIESHICYF  145 (510)
Q Consensus       118 ~g~TpL~~A~~~g~~~~v~~Ll~~ga~~  145 (510)
                      +|.||+.+|-..||-++.+.|++...++
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e~~y~v  226 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVEIQYEL  226 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHHHHHHH
Confidence            9999999999999999988888764443

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.82  E-value=2.1e-09  Score=70.50  Aligned_cols=38  Identities=37%  Similarity=0.983  Sum_probs=33.4

Q ss_pred             cccccccccce-EEeCCCCccchHHhHHHHhccCCccccc
Q 010439          459 CVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVC  497 (510)
Q Consensus       459 C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~Cp~C  497 (510)
                      |+||++...++ ++++|||.| |+.|+.++.+.+.+||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence            89999999999 689999999 999999998887799998

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.81  E-value=4.5e-09  Score=102.63  Aligned_cols=94  Identities=20%  Similarity=0.238  Sum_probs=74.7

Q ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccCCCCCCcHHHH
Q 010439           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTALGV  125 (510)
Q Consensus        47 d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~TpL~~  125 (510)
                      +.++.-.++||+.. |.+..++.+.-.|.|++..  |.+.+|+||.|+..|+++++++||+. +.+++.+|..|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~-GD~~alrRf~l~g~D~~~~--DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKN-GDLSALRRFALQGMDLETK--DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhc-CCHHHHHHHHHhccccccc--ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            34567778888876 7788888877788888877  77788888888888888888888864 77888888888888888


Q ss_pred             HHHcCCHHHHHHHHhccc
Q 010439          126 ARIKGHINVVRAIESHIC  143 (510)
Q Consensus       126 A~~~g~~~~v~~Ll~~ga  143 (510)
                      |...+|.+++++|.+..-
T Consensus       580 A~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hHhcCcHHHHHHHHHHhc
Confidence            888888888888876653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.79  E-value=2e-08  Score=98.63  Aligned_cols=87  Identities=30%  Similarity=0.358  Sum_probs=81.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcC
Q 010439           19 ELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (510)
Q Consensus        19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g   97 (510)
                      --||..++.|++++--.||..|+++|..+ ..|.||||.|++. |+.--+++|+-+|||+++.  |..|+||+.||-..|
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~-Gq~~Q~ElL~vYGAD~~a~--d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKA-GQILQAELLAVYGADPGAQ--DSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhc-cchhhhhHHhhccCCCCCC--CCCCCcHHHHHHhcC
Confidence            35999999999999999999999999987 4799999999998 9999999999999999998  999999999999999


Q ss_pred             CHHHHHHHHHC
Q 010439           98 LEPTVRLLLSC  108 (510)
Q Consensus        98 ~~~~v~~Ll~~  108 (510)
                      |-++.+.|++.
T Consensus       212 H~~laeRl~e~  222 (669)
T KOG0818|consen  212 HHELAERLVEI  222 (669)
T ss_pred             chHHHHHHHHH
Confidence            99998888874

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.78  E-value=2.9e-09  Score=72.02  Aligned_cols=40  Identities=40%  Similarity=0.888  Sum_probs=35.4

Q ss_pred             ccccccccc---cceEEeCCCCccchHHhHHHHhccCCcccccc
Q 010439          458 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR  498 (510)
Q Consensus       458 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr  498 (510)
                      .|+||++..   ..++.++|||.| |..|+..|.+.+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence            699999985   577788999999 9999999999888999997

...

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.78  E-value=4.2e-09  Score=109.11  Aligned_cols=83  Identities=22%  Similarity=0.213  Sum_probs=78.6

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCCh
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~T   88 (510)
                      .|.+|..|+|+||+|+..|..+++++||++|+|++.+|. .|+||||-|+.. |++|++-+||.+|+.+.++  |+.|.+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyy-G~idca~lLL~~g~SL~i~--Dkegls  121 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYY-GNIDCASLLLSKGRSLRIK--DKEGLS  121 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhh-chHHHHHHHHhcCCceEEe--cccCCC
Confidence            467889999999999999999999999999999999996 799999999999 9999999999999999999  999999


Q ss_pred             HHHHHHH
Q 010439           89 PLHHAAK   95 (510)
Q Consensus        89 pLh~A~~   95 (510)
                      ||..-++
T Consensus       122 plq~~~r  128 (1267)
T KOG0783|consen  122 PLQFLSR  128 (1267)
T ss_pred             HHHHHhh
Confidence            9998876

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.77  E-value=7e-09  Score=101.32  Aligned_cols=93  Identities=20%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhc-cccccccccccCCCCHHHHHh
Q 010439           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPSFLEALA  162 (510)
Q Consensus        84 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~t~L~~~A  162 (510)
                      .++.-.++||++.|.+..++.+.-.|.|++.+|.+.+|+||.|+..|+++++++|++. +.+++  .+|..|+|||. -|
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~--~kDRw~rtPlD-dA  580 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPD--PKDRWGRTPLD-DA  580 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCC--hhhccCCCcch-Hh
Confidence            4556677777777777777777777777777777777777777777777777777765 24455  67777777777 77


Q ss_pred             hhcCCHHHHHHHhhCCC
Q 010439          163 PQLMSRKIWVVVIPCGT  179 (510)
Q Consensus       163 ~~~~~~~~~~~Ll~~ga  179 (510)
                      ...++.+++++|-+...
T Consensus       581 ~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhcCcHHHHHHHHHHhc
Confidence            77777777777766544

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.76  E-value=6.1e-09  Score=96.12  Aligned_cols=51  Identities=37%  Similarity=0.840  Sum_probs=43.2

Q ss_pred             ccccccccccccc--------eEEeCCCCccchHHhHHHHhccCCccccccccccceeEe
Q 010439          456 SSSCVICWEAPVE--------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  507 (510)
Q Consensus       456 ~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i  507 (510)
                      ..+|+||++...+        +++.+|+|.| |..|+..|...+..||+||.++..+++.
T Consensus       174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        174 DKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence            3689999997543        3566899999 9999999998888999999999887655

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.75  E-value=3.9e-08  Score=97.90  Aligned_cols=118  Identities=21%  Similarity=0.266  Sum_probs=91.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC--ccccCCCCCCChHHHHHHHcCC
Q 010439           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN--INAYRPGGRGGTPLHHAAKRGL   98 (510)
Q Consensus        21 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~--~n~~~~d~~g~TpLh~A~~~g~   98 (510)
                      |..|+..+++--+..+-..|.++-.++.+..|.||||+.. |+-++|++||++|..  ++..  |..|.|+||-|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~t-g~~eivkyildh~p~elld~~--de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKT-GNGEIVKYILDHGPSELLDMA--DETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhc-CChHHHHHHHhcCCHHHHHHH--hhhhhHHHHHHHHhcc
Confidence            5556666766666666667777777777888888888876 888888888888753  3444  6778888888888888


Q ss_pred             HHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 010439           99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (510)
Q Consensus        99 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  141 (510)
                      ..+..+|++.|+.+...|..|.||-.-|-+.|..++..+|..+
T Consensus       947 r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            8888888888888888888888888888888888888887655

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.8e-09  Score=101.63  Aligned_cols=54  Identities=35%  Similarity=0.857  Sum_probs=48.4

Q ss_pred             CCcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439          453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  510 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~  510 (510)
                      ......|+||++.+.+.+++||||+++|..|...+.+    ||+||+.|...+++|+.
T Consensus       302 ~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~----CPvCR~rI~~~~k~y~~  355 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQ----CPVCRQRIRLVRKRYRS  355 (355)
T ss_pred             cCCCCceEEecCCccceeeecCCcEEEchHHHhhCCC----CchhHHHHHHHHHHhcC
Confidence            3344689999999999999999999999999998876    99999999999999863

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.74  E-value=7e-09  Score=68.83  Aligned_cols=38  Identities=37%  Similarity=0.905  Sum_probs=30.8

Q ss_pred             cccccccccceEEeCCCCccchHHhHHHHhccC----Cccccc
Q 010439          459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK----GDCPVC  497 (510)
Q Consensus       459 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~Cp~C  497 (510)
                      |+||++.+.++|.++|||.| |..|+.++++..    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999 999999999764    259987

>PF13606 Ank_3: Ankyrin repeat

Probab=98.71  E-value=1.7e-08  Score=61.76  Aligned_cols=28  Identities=46%  Similarity=0.767  Sum_probs=12.2

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHcCCCcc
Q 010439           50 GKTPLIVACMDSGLINVAKTLIELGANIN   78 (510)
Q Consensus        50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n   78 (510)
                      |+||||+||.. |+.+++++||++|+|+|
T Consensus         2 G~T~Lh~A~~~-g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASN-GNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHh-CCHHHHHHHHHcCCCCC
Confidence            44444444443 44444444444444443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.70  E-value=1.9e-08  Score=61.52  Aligned_cols=28  Identities=46%  Similarity=0.614  Sum_probs=17.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANAL  113 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~  113 (510)
                      |+||||+|++.|+.++|++||++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.68  E-value=3.1e-08  Score=62.40  Aligned_cols=30  Identities=43%  Similarity=0.610  Sum_probs=13.1

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHcCCCcccc
Q 010439           50 GKTPLIVACMDSGLINVAKTLIELGANINAY   80 (510)
Q Consensus        50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~   80 (510)
                      |+||||+|+.. |+.+++++||++|++++.+
T Consensus         2 G~TpLh~A~~~-~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQR-GHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             SBBHHHHHHHT-TCHHHHHHHHHTTSCTTCB
T ss_pred             cccHHHHHHHH-HHHHHHHHHHHCcCCCCCC
Confidence            44444444443 4444444444444444433

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.67  E-value=5.6e-08  Score=97.21  Aligned_cols=84  Identities=27%  Similarity=0.326  Sum_probs=55.0

Q ss_pred             CcHHHHHHHHHcCCC--ccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 010439           62 GLINVAKTLIELGAN--INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  139 (510)
Q Consensus        62 ~~~~~v~~Ll~~ga~--~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  139 (510)
                      ..+..+-+||.+|-.  +|..--+.+|+|+||+||+.|++.+.++|+-+|+|+..+|..|+|+|.||-..|.-+++..|+
T Consensus       635 ~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~ll  714 (749)
T KOG0705|consen  635 EDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLL  714 (749)
T ss_pred             HHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHH
Confidence            455666666666643  222212455677777777777777777777777777777777777777777777777777777


Q ss_pred             hccccc
Q 010439          140 SHICYF  145 (510)
Q Consensus       140 ~~ga~~  145 (510)
                      .+|+.-
T Consensus       715 q~gcp~  720 (749)
T KOG0705|consen  715 QYGCPD  720 (749)
T ss_pred             HcCCCc
Confidence            777543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.65  E-value=7.2e-08  Score=96.48  Aligned_cols=92  Identities=24%  Similarity=0.177  Sum_probs=80.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCC----ccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhh
Q 010439           88 TPLHHAAKRGLEPTVRLLLSCGANA----LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAP  163 (510)
Q Consensus        88 TpLh~A~~~g~~~~v~~Ll~~gad~----~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~  163 (510)
                      .-|..|+....+..+-+||.+|...    ...+.+|+|+||+|+..|++.+.++|+=+|+|+.  .+|..|+|+|. ||-
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~--~rda~g~t~l~-yar  702 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM--ARDAHGRTALF-YAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce--ecccCCchhhh-hHh
Confidence            4577788888889999999998543    3345678999999999999999999999999999  99999999999 999


Q ss_pred             hcCCHHHHHHHhhCCCCCC
Q 010439          164 QLMSRKIWVVVIPCGTANP  182 (510)
Q Consensus       164 ~~~~~~~~~~Ll~~ga~~~  182 (510)
                      +.+..+++.+|+++|...+
T Consensus       703 ~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  703 QAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hcccHHHHHHHHHcCCCcc
Confidence            9999999999999998653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.64  E-value=3.5e-08  Score=62.18  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=31.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDK   48 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~   48 (510)
                      +|.||||+|+..|+.++|++||++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.59  E-value=1.1e-07  Score=94.82  Aligned_cols=86  Identities=27%  Similarity=0.373  Sum_probs=67.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcC
Q 010439           20 LLYQWVIAGDVDAIRALRSQ--GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (510)
Q Consensus        20 ~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g   97 (510)
                      +||+++...+.+-+..++..  ...++.+|..|.||||+|+.. |+.+.++.|+.+|+++-.+  +..||+|||-|+..|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~L-g~~~~a~~Ll~a~Adv~~k--N~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRL-GHVEAARILLSAGADVSIK--NNEGWSPLHEAVSTG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHh-cCHHHHHHHHhcCCCcccc--ccccccHHHHHHHcC
Confidence            48888887777666654442  346777888888888888887 8888888888888888887  888888888888888


Q ss_pred             CHHHHHHHHHC
Q 010439           98 LEPTVRLLLSC  108 (510)
Q Consensus        98 ~~~~v~~Ll~~  108 (510)
                      +.+++..+|.+
T Consensus       100 ~~q~i~~vlr~  110 (560)
T KOG0522|consen  100 NEQIITEVLRH  110 (560)
T ss_pred             CHHHHHHHHHH
Confidence            88887777765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.59  E-value=2e-07  Score=93.00  Aligned_cols=117  Identities=18%  Similarity=0.097  Sum_probs=100.1

Q ss_pred             HHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCC--CccCCCCCCcHHHHHHHcCCH
Q 010439           55 IVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN--ALVRNDDCHTALGVARIKGHI  132 (510)
Q Consensus        55 ~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~g~TpL~~A~~~g~~  132 (510)
                      .-|+.. +.+--++.+...|.++-.+  +.+..|-||||++.|+-++|++||++|-.  ++..|..|.|+||-|+-.++.
T Consensus       871 l~av~~-~D~~klqE~h~~gg~ll~~--~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  871 LRAVLS-SDLMKLQETHLNGGSLLIQ--GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHh-ccHHHHHHHHhcCCceEee--CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            444544 5444455566678888888  77889999999999999999999999853  456789999999999999999


Q ss_pred             HHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhC
Q 010439          133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (510)
Q Consensus       133 ~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~  177 (510)
                      .+.++|++.|+.+.  ..|..|+||-. -|.+.+..++..+|-.+
T Consensus       948 ~vc~~lvdagasl~--ktd~kg~tp~e-raqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLR--KTDSKGKTPQE-RAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchhhe--ecccCCCChHH-HHHhcCCchHHHHHhhh
Confidence            99999999999998  89999999999 89999999999988654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=1.4e-07  Score=94.05  Aligned_cols=87  Identities=26%  Similarity=0.401  Sum_probs=73.2

Q ss_pred             hHHHHHHHhCCcHH-HHHHHHH-cCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHc
Q 010439           52 TPLIVACMDSGLIN-VAKTLIE-LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK  129 (510)
Q Consensus        52 TpL~~A~~~~~~~~-~v~~Ll~-~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~  129 (510)
                      -|||+++.. ...+ +.+.|+. .+..++.+  |..|.||||+|+..|+...+++|+..|+++..+|+.|++|||.|+..
T Consensus        22 ~~lh~~~~~-~~~~sl~~el~~~~~~~id~~--D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVT-TDSDSLEQELLAKVSLVIDRR--DPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhc-cchhhHHHHHhhhhhceeccc--cCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHc
Confidence            459999987 5444 5554443 34556666  88999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhc
Q 010439          130 GHINVVRAIESH  141 (510)
Q Consensus       130 g~~~~v~~Ll~~  141 (510)
                      |+..++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            999888877765

>PHA02926 zinc finger-like protein; Provisional

Probab=98.52  E-value=4.8e-08  Score=86.83  Aligned_cols=50  Identities=28%  Similarity=0.828  Sum_probs=39.7

Q ss_pred             cccccccccccc---------cceEEeCCCCccchHHhHHHHhccC------Ccccccccccccee
Q 010439          455 SSSSCVICWEAP---------VEGACVPCGHMAGCMSCLSEIKAKK------GDCPVCRTKINQVI  505 (510)
Q Consensus       455 ~~~~C~iC~~~~---------~~~~~~pCgH~~~C~~C~~~~~~~~------~~Cp~Cr~~i~~~~  505 (510)
                      .+.+|.||||..         +-.++.+|+|.| |..|+..|...+      ..||+||..+..++
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~  233 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNIT  233 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence            346899999873         235777999999 999999998742      35999999887544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.49  E-value=4.9e-07  Score=95.27  Aligned_cols=123  Identities=17%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcC----CCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQG----ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp   89 (510)
                      ...+.-....|+++|+.-.|+..++..    .++|.+|.-|+++|++|+.+ .+.+++++|++++..+         ..+
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~n-enle~~eLLl~~~~~~---------gdA   91 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDN-ENLELQELLLDTSSEE---------GDA   91 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccc-ccHHHHHHHhcCcccc---------chH
Confidence            344566778899999999999999853    45788899999999999987 8999999999997554         359


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC----------ccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANA----------LVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~----------~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  146 (510)
                      |.+|+..|..++|++++.+....          ...-..+.|||++|+..++.||+++|+.+|+.+.
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            99999999999999999885332          1223457899999999999999999999998775

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.44  E-value=1.5e-07  Score=63.41  Aligned_cols=41  Identities=39%  Similarity=0.972  Sum_probs=34.6

Q ss_pred             ccccccccc---cceEEeCCCCccchHHhHHHHhccCCccccccc
Q 010439          458 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT  499 (510)
Q Consensus       458 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~  499 (510)
                      .|.||++..   ..+.+++|||.| |..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence            489999887   467888999999 99999999844458999985

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.44  E-value=1.3e-07  Score=62.90  Aligned_cols=38  Identities=37%  Similarity=0.926  Sum_probs=34.1

Q ss_pred             cccccccccceE-EeCCCCccchHHhHHHHhcc--CCccccc
Q 010439          459 CVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAK--KGDCPVC  497 (510)
Q Consensus       459 C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~--~~~Cp~C  497 (510)
                      |.||++...+.+ +++|||.| |..|+.++...  ..+||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence            889999999998 89999999 99999999883  3489998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.41  E-value=1.8e-07  Score=63.40  Aligned_cols=43  Identities=42%  Similarity=0.913  Sum_probs=35.5

Q ss_pred             ccccccccccceEEeC-CCCccchHHhHHHHhcc-CCccccccccc
Q 010439          458 SCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAK-KGDCPVCRTKI  501 (510)
Q Consensus       458 ~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i  501 (510)
                      .|.||++.....+.++ |||.| |..|...+... +.+||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999985555554 99999 99999999876 56899999754

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.40  E-value=1.5e-07  Score=101.77  Aligned_cols=102  Identities=22%  Similarity=0.124  Sum_probs=84.9

Q ss_pred             HHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccccccc
Q 010439           71 IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR  150 (510)
Q Consensus        71 l~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~  150 (510)
                      +.+++++|...+-..|.|+||.|+..+...++++||..|+++|..|..|+||||.+...|+...+.+|+++|++.+  +.
T Consensus       641 ~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~--a~  718 (785)
T KOG0521|consen  641 LAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN--AF  718 (785)
T ss_pred             hcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc--cc
Confidence            3455666543224568899999999999999999999999999999999999999999999999999999999998  88


Q ss_pred             ccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439          151 EFYGPSFLEALAPQLMSRKIWVVVI  175 (510)
Q Consensus       151 d~~g~t~L~~~A~~~~~~~~~~~Ll  175 (510)
                      +.+|+++|+ +|....+.+++-+|.
T Consensus       719 ~~~~~~~l~-~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  719 DPDGKLPLD-IAMEAANADIVLLLR  742 (785)
T ss_pred             CccCcchhh-HHhhhccccHHHHHh
Confidence            999999999 776667766666554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.38  E-value=1.4e-06  Score=75.67  Aligned_cols=71  Identities=28%  Similarity=0.204  Sum_probs=59.9

Q ss_pred             CCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439           74 GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (510)
Q Consensus        74 ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  146 (510)
                      +.++|.+  |..|||+||.|+..|..+.+.+|+.+| +.+...|..|.+++.+|-+.|+.++|+.|.+.-.+-.
T Consensus         2 e~~in~r--D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    2 EGNINAR--DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             CCCccch--hhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCC
Confidence            4578887  888999999999999999999999988 8888888899999999999999999888887754443

>smart00504 Ubox Modified RING finger domain

Probab=98.38  E-value=2.6e-07  Score=67.89  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=41.6

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      ..|+||.+...+++..+|||.| |..|+..+......||+|+.++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCC
Confidence            4799999999999999999999 99999999887778999999884

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.36  E-value=2.6e-07  Score=91.78  Aligned_cols=50  Identities=24%  Similarity=0.549  Sum_probs=44.1

Q ss_pred             CCcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .+....|.||++.+.+++.++|||.| |..|+..+......||+||..+..
T Consensus        23 Le~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        23 LDTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence            34457999999999999999999999 999999998777789999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.2e-07  Score=84.87  Aligned_cols=46  Identities=43%  Similarity=0.995  Sum_probs=39.4

Q ss_pred             ccccccccccccceEEeCCCCccchHHhHHHHhc-cCC-cccccccccc
Q 010439          456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKG-DCPVCRTKIN  502 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~-~Cp~Cr~~i~  502 (510)
                      +..|.||++.+-.++..||||.| |+.|+..++. ++. .||+||+.+.
T Consensus       215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhcc
Confidence            36899999999999999999999 9999998444 333 5999999874

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.33  E-value=6.4e-07  Score=97.06  Aligned_cols=100  Identities=29%  Similarity=0.388  Sum_probs=87.6

Q ss_pred             HHcCCCCcccC--CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcc
Q 010439           37 RSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALV  114 (510)
Q Consensus        37 l~~g~~~~~~d--~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~  114 (510)
                      +.+++++|..+  ..|.|+||.|+.. +..-++++||+.|+++|..  |..|+||||.+...|+...+.+|++.|++.++
T Consensus       641 ~~~~~~~n~~~~~~~~~s~lh~a~~~-~~~~~~e~ll~~ga~vn~~--d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a  717 (785)
T KOG0521|consen  641 LAHGCCENWPVVLCIGCSLLHVAVGT-GDSGAVELLLQNGADVNAL--DSKGRTPLHHATASGHTSIACLLLKRGADPNA  717 (785)
T ss_pred             hcchhhhccchhhhcccchhhhhhcc-chHHHHHHHHhcCCcchhh--hccCCCcchhhhhhcccchhhhhccccccccc
Confidence            33455555533  5689999999997 9999999999999999999  99999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHH
Q 010439          115 RNDDCHTALGVARIKGHINVVRAIE  139 (510)
Q Consensus       115 ~d~~g~TpL~~A~~~g~~~~v~~Ll  139 (510)
                      .+.+|+++|++|....+.+++-+|.
T Consensus       718 ~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  718 FDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             cCccCcchhhHHhhhccccHHHHHh
Confidence            9999999999998877777665554

>smart00184 RING Ring finger

Probab=98.31  E-value=4.9e-07  Score=59.03  Aligned_cols=38  Identities=37%  Similarity=0.988  Sum_probs=33.9

Q ss_pred             cccccccccceEEeCCCCccchHHhHHHHhc-cCCccccc
Q 010439          459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVC  497 (510)
Q Consensus       459 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~C  497 (510)
                      |.||++.....+.++|||.| |..|...|.. .+..||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence            78999999999999999998 9999999877 44579987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.29  E-value=3.6e-07  Score=60.53  Aligned_cols=35  Identities=40%  Similarity=0.938  Sum_probs=22.1

Q ss_pred             cccccccccc----eEEeCCCCccchHHhHHHHhccC----Cccc
Q 010439          459 CVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKK----GDCP  495 (510)
Q Consensus       459 C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~----~~Cp  495 (510)
                      |+||.+ +.+    ++.++|||.| |..|+.+|...+    -+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EE-EHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHHHhcCCCCeeeCc
Confidence            899999 777    8999999999 999999998743    1576

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.29  E-value=1.6e-06  Score=75.38  Aligned_cols=65  Identities=23%  Similarity=0.230  Sum_probs=40.9

Q ss_pred             CCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcC-CCccccCCCCCCChHHHHHHHcCCHHHHHHHHHC
Q 010439           41 ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC  108 (510)
Q Consensus        41 ~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g-a~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~  108 (510)
                      .++|.+|.+|+||||.|+.. |+.+.+.+|+.+| +.+...  |..|.+++.+|-+.|+.++++.|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~e-g~~eavsyllgrg~a~vgv~--d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAME-GSNEAVSYLLGRGVAFVGVT--DESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhh-cchhHHHHHhccCccccccc--ccccchHHHHHHhcChHHHHHHHHHH
Confidence            45566666666666666665 6666666666666 566655  56666666666666666666666654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.27  E-value=2.5e-06  Score=90.09  Aligned_cols=126  Identities=22%  Similarity=0.172  Sum_probs=101.6

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcC----CCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHH
Q 010439           49 EGKTPLIVACMDSGLINVAKTLIELG----ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (510)
Q Consensus        49 ~g~TpL~~A~~~~~~~~~v~~Ll~~g----a~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~  124 (510)
                      .+.--...|+.+ |+.-.|+..++..    .++|.+  |.-|+++|+.|+.+.+.+++++|++++..+       ..+|.
T Consensus        24 ~~e~~fL~a~E~-gd~~~V~k~l~~~~~~~lninc~--d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL   93 (822)
T KOG3609|consen   24 EGEKGFLLAHEN-GDVPLVAKALEYKAVSKLNINCR--DPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALL   93 (822)
T ss_pred             hhhHHHHHHHHc-CChHHHHHHHHhccccccchhcc--ChHhhhceecccccccHHHHHHHhcCcccc-------chHHH
Confidence            344556678888 8888888887653    456777  889999999999999999999999987654       35899


Q ss_pred             HHHHcCCHHHHHHHHhccccccc--------cccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCC
Q 010439          125 VARIKGHINVVRAIESHICYFCG--------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP  185 (510)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~--------~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~  185 (510)
                      +|+..|.+++|++|+.+.....+        -..-.-+.|||. +|+..++.||+++||.+|+.+....
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli-LAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM-LAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH-HHHHhcchHHHHHHHHcCCCCCCCc
Confidence            99999999999999988644311        012234689999 9999999999999999999886544

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=5.8e-07  Score=89.67  Aligned_cols=52  Identities=29%  Similarity=0.768  Sum_probs=43.9

Q ss_pred             ccccccccccccceEEeCCCCccchHHhHHHHhccC-----Cccccccccccc--eeEee
Q 010439          456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-----GDCPVCRTKINQ--VIRLY  508 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----~~Cp~Cr~~i~~--~~~i~  508 (510)
                      ...|+||++.+.-++...|||.| |..|+.+.+...     ++||+||..|.-  ...+|
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            46899999999999999999999 999999988754     479999999875  44443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.19  E-value=1.5e-06  Score=93.64  Aligned_cols=122  Identities=25%  Similarity=0.168  Sum_probs=61.8

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHH-HcCCCccccCCCCCCChHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRGGTPLH   91 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll-~~ga~~n~~~~d~~g~TpLh   91 (510)
                      ...|++.||+++..+..-+++.+++- |......|.+|+-.+|+++ . ++++++.+|+ -.|..++++  |..||||||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~-lg~ewA~ll~~~~~~ai~i~--D~~G~tpL~  646 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-A-LGYEWAFLPISADGVAIDIR--DRNGWTPLH  646 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-h-cCCceeEEEEeecccccccc--cCCCCcccc
Confidence            34455555555555555555555553 4444444555555555533 2 3444444443 334555555  555555555


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCc------cCCCCCCcHHHHHHHcCCHHHHHHHH
Q 010439           92 HAAKRGLEPTVRLLLSCGANAL------VRNDDCHTALGVARIKGHINVVRAIE  139 (510)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~gad~~------~~d~~g~TpL~~A~~~g~~~~v~~Ll  139 (510)
                      +|+.+|+..++..|++.|++..      ..+-.|.|+-.+|..+|+..+.-+|-
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence            5555555555555555544322      22223555555555555555544443

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.17  E-value=1.6e-06  Score=65.37  Aligned_cols=41  Identities=34%  Similarity=0.853  Sum_probs=33.6

Q ss_pred             cccccccccc-------------cceEEeCCCCccchHHhHHHHhccCCcccccc
Q 010439          457 SSCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR  498 (510)
Q Consensus       457 ~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr  498 (510)
                      ..|.||++..             ..++..+|||.| +..|+.+|...+..||+||
T Consensus        20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred             CcccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence            3599999876             344566899999 9999999998888999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.16  E-value=6.3e-07  Score=84.10  Aligned_cols=48  Identities=27%  Similarity=0.645  Sum_probs=44.0

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      +...|.||+|-+..+++.||+|.| |..|+......++.||.|+.++.+
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence            346899999999999999999999 999999999888899999998864

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.09  E-value=1.8e-06  Score=79.32  Aligned_cols=46  Identities=28%  Similarity=0.547  Sum_probs=42.8

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      ..|-||-+..+.++..+|||.| |+.|+.+.....+.||+||.+...
T Consensus        26 lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          26 LRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             HHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHHh
Confidence            6899999999999999999999 999999999888899999998754

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=6.2e-07  Score=93.96  Aligned_cols=51  Identities=24%  Similarity=0.621  Sum_probs=44.7

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhcc-CCcccccccccc--ceeEee
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN--QVIRLY  508 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~--~~~~i~  508 (510)
                      ..|++|.++++++|+..|||.| |+.|+...... .++||.|.+++.  ++.+||
T Consensus       644 LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  644 LKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             eeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence            4799999999999999999999 99999776654 468999999995  688876

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.07  E-value=2.2e-05  Score=75.36  Aligned_cols=56  Identities=36%  Similarity=0.471  Sum_probs=33.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC
Q 010439           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA   75 (510)
Q Consensus        19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga   75 (510)
                      --|..|++.|+++.|+.|++.|.++|.+|+...+||.+|+.- ||.++|++||+.||
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLc-GHe~vvklLLenGA   93 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLC-GHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHc-CcHHHHHHHHHcCC
Confidence            345556666666666666666666666666666666666654 56666666666655

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.06  E-value=1.5e-05  Score=76.35  Aligned_cols=85  Identities=28%  Similarity=0.307  Sum_probs=68.7

Q ss_pred             ChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcC
Q 010439           51 KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (510)
Q Consensus        51 ~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  130 (510)
                      .--|.+||+. |..+.|+.|++.|.++|.+  |....+||.+|+..||..+|++||+.|+-...-.-+|.- -||++.+.
T Consensus        37 f~elceacR~-GD~d~v~~LVetgvnVN~v--D~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R-C~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRA-GDVDRVRYLVETGVNVNAV--DRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR-CHYGALND  112 (516)
T ss_pred             hHHHHHHhhc-ccHHHHHHHHHhCCCcchh--hcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch-hhhhhhhH
Confidence            5568999997 9999999999999999999  899999999999999999999999999865544445544 36666653


Q ss_pred             CHHHHHHHHhc
Q 010439          131 HINVVRAIESH  141 (510)
Q Consensus       131 ~~~~v~~Ll~~  141 (510)
                        .|-+.|++.
T Consensus       113 --~IR~mllsy  121 (516)
T KOG0511|consen  113 --RIRRMLLSY  121 (516)
T ss_pred             --HHHHHHHHH
Confidence              344555554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.05  E-value=5e-06  Score=89.74  Aligned_cols=129  Identities=15%  Similarity=-0.030  Sum_probs=101.4

Q ss_pred             cccCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChHHHHHHHcCCHHHHHHH-HHCCCCCccCCCCCCc
Q 010439           44 EWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLL-LSCGANALVRNDDCHT  121 (510)
Q Consensus        44 ~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~L-l~~gad~~~~d~~g~T  121 (510)
                      ......|+|-||+++.. +..-+++.+++- |-.....  |.+|...+|+++ .++.+..-+| .-.|..++.+|..|+|
T Consensus       568 ~~~~~r~~lllhL~a~~-lyawLie~~~e~~~~~~~el--d~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~t  643 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAEL-LYAWLIEKVIEWAGSGDLEL--DRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWT  643 (975)
T ss_pred             ccCCCcchHHHHHHHHH-hHHHHHHHHhcccccCchhh--cccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCc
Confidence            33456799999999988 888889998885 6555555  777888888844 4555555444 4568899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccccccc----cccccCCCCHHHHHhhhcCCHHHHHHHhhC
Q 010439          122 ALGVARIKGHINVVRAIESHICYFCG----WLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (510)
Q Consensus       122 pL~~A~~~g~~~~v~~Ll~~ga~~~~----~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~  177 (510)
                      |||+|+.+|+..++..|++.|++...    ....-.|.|+-. +|..+|+..+..+|-+.
T Consensus       644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~-la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAAD-LARANGHKGIAGYLSEK  702 (975)
T ss_pred             ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhh-hhhcccccchHHHHhhh
Confidence            99999999999999999988876541    123446899999 89999999998888655

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=2.3e-06  Score=78.07  Aligned_cols=47  Identities=28%  Similarity=0.695  Sum_probs=42.6

Q ss_pred             ccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEee
Q 010439          458 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  508 (510)
Q Consensus       458 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~  508 (510)
                      .|..|.++...++++||.|.+.|..|...+..    ||+|+.++...+.+|
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~----CPiC~~~~~s~~~v~  206 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDESLRI----CPICRSPKTSSVEVN  206 (207)
T ss_pred             cceecCcCCceEEeecccceEecccccccCcc----CCCCcChhhceeecc
Confidence            49999999999999999999999999876443    999999999988876

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=4.3e-06  Score=77.53  Aligned_cols=49  Identities=29%  Similarity=0.617  Sum_probs=40.0

Q ss_pred             CCcccccccccccc---cceEEeCCCCccchHHhHHHHhc-cCCcccccccccc
Q 010439          453 DGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN  502 (510)
Q Consensus       453 ~~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~  502 (510)
                      .+..-+|.|||+.+   ...+.+||.|.| ...|+++|.. .+.+||+||.++.
T Consensus       320 a~~GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         320 ADKGVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             cCCCceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence            34447999999874   236678999999 9999999987 5668999999874

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=4.3e-06  Score=79.57  Aligned_cols=45  Identities=29%  Similarity=0.874  Sum_probs=38.4

Q ss_pred             ccccccccccc-------------cceEEeCCCCccchHHhHHHHhccCCccccccccc
Q 010439          456 SSSCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  501 (510)
Q Consensus       456 ~~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i  501 (510)
                      +..|.||||..             ..+.-+||||.+ ...|.+.|.+++..||+||.++
T Consensus       287 D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         287 DRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             CCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence            36899999972             223578999999 9999999999888999999995

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.84  E-value=1.7e-05  Score=59.94  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=39.1

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      +...|+||.+...++|.+||||.| +..|+.+|... ...||+|+.++..
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            457999999999999999999999 99999999988 5689999998875

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=6.2e-06  Score=76.74  Aligned_cols=48  Identities=27%  Similarity=0.625  Sum_probs=41.9

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhccC-Ccccccccccccee
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQVI  505 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~~~  505 (510)
                      .+|.||+....-++.++|+|.| |+.|++...... +.|++||.+|.+.|
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcch
Confidence            5899999999889999999999 999998876554 46999999998754

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=1.5e-05  Score=77.25  Aligned_cols=46  Identities=28%  Similarity=0.689  Sum_probs=38.5

Q ss_pred             ccccccccccc---ceEEeCCCCccchHHhHHHHhccCC-ccccccccccc
Q 010439          457 SSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  503 (510)
Q Consensus       457 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~  503 (510)
                      ..|.||+|.+.   ....+||+|.| ...|++.|..+.+ .||+|+..+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCC
Confidence            48999999864   34467999999 9999999998876 59999997754

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=2e-05  Score=74.51  Aligned_cols=51  Identities=27%  Similarity=0.785  Sum_probs=44.7

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCcccccccccccee
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  505 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  505 (510)
                      .++..|+||+..+.+.||.||+|.- |+.|+.+..-..+.|=.|+..+...+
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~~~  470 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVIDVI  470 (489)
T ss_pred             cccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeeehh
Confidence            4557999999999999999999999 99999988776778999999887544

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.55  E-value=3.2e-05  Score=74.38  Aligned_cols=48  Identities=38%  Similarity=0.857  Sum_probs=42.6

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhccC-C-cccccccccccee
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-G-DCPVCRTKINQVI  505 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~-~Cp~Cr~~i~~~~  505 (510)
                      ..|-||-|+.+++..-||||.. |..|...|.... + .||.||..|...-
T Consensus       370 eLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEecccc
Confidence            5899999999999999999999 999999998654 3 7999999997643

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=4.2e-05  Score=76.17  Aligned_cols=45  Identities=38%  Similarity=0.775  Sum_probs=39.2

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT  499 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~  499 (510)
                      .+...|.||++.+..++.+||||.| |..|+..++...-.||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence            4557999999999999999999999 99999999863337999994

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.40  E-value=2.2e-05  Score=55.77  Aligned_cols=43  Identities=35%  Similarity=0.871  Sum_probs=23.1

Q ss_pred             cccccccccccceEE-eCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          457 SSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      ..|.+|.+..+.+|. ..|.|.| |..|+..-..  ..||+|+.|..
T Consensus         8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~--~~CPvC~~Paw   51 (65)
T PF14835_consen    8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIG--SECPVCHTPAW   51 (65)
T ss_dssp             TS-SSS-S--SS-B---SSS--B--TTTGGGGTT--TB-SSS--B-S
T ss_pred             cCCcHHHHHhcCCceeccCccHH-HHHHhHHhcC--CCCCCcCChHH
Confidence            589999999999975 5899999 9999866432  25999998874

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.39  E-value=0.00016  Score=68.45  Aligned_cols=56  Identities=34%  Similarity=0.742  Sum_probs=44.8

Q ss_pred             CCCCCCCcccccccccccccceEEeCCCCccchHHhHHHHhcc--CCccccccccccce
Q 010439          448 SNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKINQV  504 (510)
Q Consensus       448 ~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~Cp~Cr~~i~~~  504 (510)
                      +..+.+++...|.||-+...-...+||+|.. |..|+-++...  .+.||+||..-..+
T Consensus        53 SaddtDEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V  110 (493)
T COG5236          53 SADDTDEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAV  110 (493)
T ss_pred             cccccccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceE
Confidence            3334456668999999998888889999999 99999988753  56899999876544

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.34  E-value=0.00018  Score=54.68  Aligned_cols=33  Identities=30%  Similarity=0.644  Sum_probs=27.2

Q ss_pred             eEEeCCCCccchHHhHHHHhcc---CCcccccccccc
Q 010439          469 GACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKIN  502 (510)
Q Consensus       469 ~~~~pCgH~~~C~~C~~~~~~~---~~~Cp~Cr~~i~  502 (510)
                      .+.-.|+|.| ...|+.+|...   +..||+||++..
T Consensus        47 lv~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   47 LVWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             eeeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence            3455799999 99999999875   358999999764

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00016  Score=72.28  Aligned_cols=49  Identities=31%  Similarity=0.807  Sum_probs=43.8

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      ..+..|.||+..+..++..||||.+ |..|+.+...++..||.||.++.+
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence            3457999999999999999999999 999999987777799999998875

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.00013  Score=77.40  Aligned_cols=47  Identities=36%  Similarity=0.767  Sum_probs=41.2

Q ss_pred             cccccccccccccc-----eEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          455 SSSSCVICWEAPVE-----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       455 ~~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      ....|.||+|....     +..+||+|.| |..|...|-+++..||+||..+.
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhhh
Confidence            34689999999877     6888999999 99999999998889999999543

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.17  E-value=0.00014  Score=50.05  Aligned_cols=44  Identities=32%  Similarity=0.865  Sum_probs=36.1

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      ..|..|.......+++||||.+ |..|......  ..||+|..+++.
T Consensus         8 ~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rY--ngCPfC~~~~~~   51 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERY--NGCPFCGTPFEF   51 (55)
T ss_pred             eeEEEcccccccccccccccee-eccccChhhc--cCCCCCCCcccC
Confidence            5799999998888899999999 9999655433  249999998863

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00024  Score=69.45  Aligned_cols=50  Identities=32%  Similarity=0.702  Sum_probs=40.5

Q ss_pred             cccccccccccccceE-----E---eCCCCccchHHhHHHHh--cc-----CCcccccccccccee
Q 010439          455 SSSSCVICWEAPVEGA-----C---VPCGHMAGCMSCLSEIK--AK-----KGDCPVCRTKINQVI  505 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~-----~---~pCgH~~~C~~C~~~~~--~~-----~~~Cp~Cr~~i~~~~  505 (510)
                      .+..|.|||+.....+     +   .+|-|.| |..|+..|.  .+     .+.||.||.+...++
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~  224 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN  224 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence            3468999999876665     4   6799999 999999998  33     467999999877554

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=8.6e-05  Score=70.84  Aligned_cols=50  Identities=24%  Similarity=0.554  Sum_probs=38.6

Q ss_pred             cccccccccccccceEEe-CCCCccchHHhHHHHhc-cCCcccccccccccee
Q 010439          455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVI  505 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~  505 (510)
                      .+..|.||++..+..... -|+|.| |+.|+..-.. .+..||.||+......
T Consensus        42 ~~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             hhhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhccccc
Confidence            346899999997655544 699999 9999866544 4568999999887543

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.87  E-value=0.0021  Score=64.32  Aligned_cols=67  Identities=19%  Similarity=0.089  Sum_probs=55.7

Q ss_pred             CcHHHHHHHHHcCCCccccC----CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439           62 GLINVAKTLIELGANINAYR----PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (510)
Q Consensus        62 ~~~~~v~~Ll~~ga~~n~~~----~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~  128 (510)
                      .-.+.++.|.+++++.|..-    .+..--|+||||+..|..++|.+||+.|+|+..+|..|+||..++..
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            33678889999988886631    13446799999999999999999999999999999999999998873

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.0011  Score=61.24  Aligned_cols=46  Identities=26%  Similarity=0.780  Sum_probs=36.9

Q ss_pred             ccccccccccccceEEe-CCCCccchHHhHHHHhcc--CCcccccccccc
Q 010439          456 SSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN  502 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~--~~~Cp~Cr~~i~  502 (510)
                      ..+|++|-+.+..+... +|||.+ |+.|+..-...  .-.||.|...+.
T Consensus       239 ~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  239 DTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCc
Confidence            36899999999888766 599999 99998654432  347999988776

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.77  E-value=0.00078  Score=45.35  Aligned_cols=42  Identities=31%  Similarity=0.755  Sum_probs=20.9

Q ss_pred             cccccccc--cceEEe--CCCCccchHHhHHHHhc-cCCccccccccc
Q 010439          459 CVICWEAP--VEGACV--PCGHMAGCMSCLSEIKA-KKGDCPVCRTKI  501 (510)
Q Consensus       459 C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i  501 (510)
                      |++|.+..  .+.-+.  +||+.+ |..|..++.. ..++||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence            56666653  333344  578888 9999999986 467999999875

>smart00248 ANK ankyrin repeats

Probab=96.72  E-value=0.0023  Score=37.50  Aligned_cols=27  Identities=44%  Similarity=0.758  Sum_probs=12.9

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHcCCCc
Q 010439           50 GKTPLIVACMDSGLINVAKTLIELGANI   77 (510)
Q Consensus        50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~   77 (510)
                      |.||||+|+.. ++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~-~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAEN-GNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHc-CCHHHHHHHHHcCCCC
Confidence            34455555444 4455555555444433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.70  E-value=0.003  Score=36.97  Aligned_cols=27  Identities=52%  Similarity=0.699  Sum_probs=15.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCC
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANA  112 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~  112 (510)
                      |.||||+|+..++.+++++|++++.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666655543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.58  E-value=0.00088  Score=58.51  Aligned_cols=47  Identities=26%  Similarity=0.467  Sum_probs=40.1

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccce
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  504 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  504 (510)
                      ..|.||......+|...|||.| |..|+.+--+....|-+|.+.....
T Consensus       197 F~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G~  243 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYGR  243 (259)
T ss_pred             eeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhccc
Confidence            4899999999999999999999 9999877666566899998765543

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.46  E-value=0.0045  Score=61.99  Aligned_cols=62  Identities=29%  Similarity=0.294  Sum_probs=53.1

Q ss_pred             HHHHHHHHHcCCCCcc------cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHH
Q 010439           30 VDAIRALRSQGASLEW------MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (510)
Q Consensus        30 ~~~v~~Ll~~g~~~~~------~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~   94 (510)
                      ...|++|.+++.+.|.      .+..--|+||||+.. |..++|.+||+.|+|+-+.  |..|.||.+++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~q-g~~k~v~~~Leeg~Dp~~k--d~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQ-GARKCVKYFLEEGCDPSTK--DGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhc-chHHHHHHHHHhcCCchhc--ccCCCCcccccc
Confidence            5678888888876643      234567999999997 9999999999999999999  999999999987

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=96.41  E-value=0.0026  Score=61.01  Aligned_cols=30  Identities=37%  Similarity=0.972  Sum_probs=25.5

Q ss_pred             CCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          473 PCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       473 pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      +|||.| |..|+.+++.. ...||.|+.++..
T Consensus        25 ~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570        25 VCGHTL-CESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCcc-cHHHHHHHhcCCCCCCCCCCCccch
Confidence            799999 99999998754 3489999998764

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0012  Score=61.84  Aligned_cols=47  Identities=26%  Similarity=0.531  Sum_probs=41.1

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccce
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  504 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  504 (510)
                      ..|-||...+.++|...|+|.| |..|+..-.+...+|.+|.+.+...
T Consensus       242 f~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGS  288 (313)
T ss_pred             ccccccccccccchhhcCCcee-ehhhhccccccCCcceecccccccc
Confidence            3699999999999999999999 9999887766667899999887654

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.25  E-value=0.0024  Score=60.44  Aligned_cols=48  Identities=31%  Similarity=0.841  Sum_probs=36.4

Q ss_pred             cccccccccccc--cceEEe--CCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          455 SSSSCVICWEAP--VEGACV--PCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      ++..|+.|+|..  .+.-|.  |||-.+ |..|...+++. +++||-||...++
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhccc
Confidence            345699999863  233344  688888 99999999874 6799999998764

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.0019  Score=59.33  Aligned_cols=45  Identities=22%  Similarity=0.536  Sum_probs=35.9

Q ss_pred             ccccccccccc----------ceEEeCCCCccchHHhHHHHhccC--Ccccccccccc
Q 010439          457 SSCVICWEAPV----------EGACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  502 (510)
Q Consensus       457 ~~C~iC~~~~~----------~~~~~pCgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~  502 (510)
                      ..|.||-...-          +..-+.|+|.| .+.|+.-|....  ..||+|++.|+
T Consensus       225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             chhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhh
Confidence            68999976532          23467999999 999999998753  47999998875

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.07  E-value=0.0046  Score=64.93  Aligned_cols=52  Identities=21%  Similarity=0.391  Sum_probs=41.7

Q ss_pred             cccccccccccccceE---EeCCCCccchHHhHHHHhccCCccccccccccceeEe
Q 010439          455 SSSSCVICWEAPVEGA---CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  507 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i  507 (510)
                      ....|.+|+....+..   -.+|+|.| |..|+..|.+-...||+||..+.+++.+
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V~  176 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKVL  176 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeeee
Confidence            3468999997755443   34899999 9999999998777899999999877654

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=95.92  E-value=0.0078  Score=51.24  Aligned_cols=51  Identities=29%  Similarity=0.701  Sum_probs=37.9

Q ss_pred             cccccccccccceEEeCCC-Cccc-----------hHHhHHHHhcc-------------------------------CCc
Q 010439          457 SSCVICWEAPVEGACVPCG-HMAG-----------CMSCLSEIKAK-------------------------------KGD  493 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCg-H~~~-----------C~~C~~~~~~~-------------------------------~~~  493 (510)
                      ..|+||||-+=++|++-|. |.-.           ..-|.++.++.                               +-.
T Consensus         3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~   82 (162)
T PF07800_consen    3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPELA   82 (162)
T ss_pred             ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccccc
Confidence            5899999999999999775 3322           35677776541                               125


Q ss_pred             cccccccccceeEe
Q 010439          494 CPVCRTKINQVIRL  507 (510)
Q Consensus       494 Cp~Cr~~i~~~~~i  507 (510)
                      ||+||..|...+.+
T Consensus        83 CPLCRG~V~GWtvv   96 (162)
T PF07800_consen   83 CPLCRGEVKGWTVV   96 (162)
T ss_pred             CccccCceeceEEc
Confidence            99999999987765

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=0.0073  Score=54.88  Aligned_cols=48  Identities=17%  Similarity=0.344  Sum_probs=40.8

Q ss_pred             cccccccccccccc----eEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          455 SSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      ....|+||.+...+    +++.||||+| |++|++++......||+|..+..+
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence            45799999997543    4577999999 999999999877789999998865

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.86  E-value=0.0075  Score=41.38  Aligned_cols=40  Identities=23%  Similarity=0.640  Sum_probs=31.8

Q ss_pred             ccccccc--cccceEEeCCC-----CccchHHhHHHHhccC--Ccccccc
Q 010439          458 SCVICWE--APVEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCR  498 (510)
Q Consensus       458 ~C~iC~~--~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~Cp~Cr  498 (510)
                      .|.||++  ...+....||.     |.+ ...|..+|...+  ..||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence            3889997  56677788996     566 999999998654  3899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.0038  Score=62.25  Aligned_cols=46  Identities=33%  Similarity=0.664  Sum_probs=36.4

Q ss_pred             cccccccccc-----------------ccceEEeCCCCccchHHhHHHHhcc-CCcccccccccc
Q 010439          456 SSSCVICWEA-----------------PVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  502 (510)
Q Consensus       456 ~~~C~iC~~~-----------------~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  502 (510)
                      ...|+|||..                 .++..+.||.|.| ...|..+|-.. +-.||.||.++.
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCC
Confidence            3589999953                 2245567999999 99999999874 348999999874

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.66  E-value=0.0078  Score=59.57  Aligned_cols=41  Identities=32%  Similarity=0.650  Sum_probs=32.3

Q ss_pred             cccccccccccc-e---EEeCCCCccchHHhHHHHhccCCcccccccc
Q 010439          457 SSCVICWEAPVE-G---ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK  500 (510)
Q Consensus       457 ~~C~iC~~~~~~-~---~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~  500 (510)
                      ..|+||+|+.-. +   +-+.|.|.| .-.|..+|+..  .||+||--
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsf-h~~cl~~w~~~--scpvcR~~  220 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSF-HCSCLMKWWDS--SCPVCRYC  220 (493)
T ss_pred             CCcchhHhhcCccccceeeeeccccc-chHHHhhcccC--cChhhhhh
Confidence            489999998432 2   456899999 88999999864  59999853

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.40  E-value=0.015  Score=55.73  Aligned_cols=52  Identities=27%  Similarity=0.454  Sum_probs=40.4

Q ss_pred             Ccccccccccccc----cceEEeCCCCccchHHhHHHHhccCCccccccccccc--eeEe
Q 010439          454 GSSSSCVICWEAP----VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ--VIRL  507 (510)
Q Consensus       454 ~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~--~~~i  507 (510)
                      .....|+|....+    .-+++.||||+| ++.++..+. ....||+|..++..  +|.|
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k-~~~~Cp~c~~~f~~~DiI~L  168 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELK-KSKKCPVCGKPFTEEDIIPL  168 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhc-ccccccccCCccccCCEEEe
Confidence            3447999998664    456667999999 999999996 34579999999864  4544

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.39  E-value=0.01  Score=39.19  Aligned_cols=46  Identities=30%  Similarity=0.882  Sum_probs=26.5

Q ss_pred             ccccccccccceEEeCCC-CccchHHhHHHHhccCCccccccccccceeE
Q 010439          458 SCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  506 (510)
Q Consensus       458 ~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~  506 (510)
                      .|--|+-..+.  ++.|. |.. |..|...|...+..||+|..++...+|
T Consensus         4 nCKsCWf~~k~--Li~C~dHYL-Cl~CLt~ml~~s~~C~iC~~~LPtkir   50 (50)
T PF03854_consen    4 NCKSCWFANKG--LIKCSDHYL-CLNCLTLMLSRSDRCPICGKPLPTKIR   50 (50)
T ss_dssp             ---SS-S--SS--EEE-SS-EE-EHHHHHHT-SSSSEETTTTEE----S-
T ss_pred             cChhhhhcCCC--eeeecchhH-HHHHHHHHhccccCCCcccCcCccccC
Confidence            56777755554  45688 665 999999999988899999998876653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=95.35  E-value=0.0085  Score=57.91  Aligned_cols=45  Identities=31%  Similarity=0.813  Sum_probs=36.9

Q ss_pred             CcccccccccccccceEEeCC--CCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPC--GHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .+..+|+||.+....+++ .|  ||.. |..|..++..   +||.||.++..
T Consensus        46 ~~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~---~CP~Cr~~~g~   92 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSN---KCPTCRLPIGN   92 (299)
T ss_pred             hhhccCchhhccCcccce-ecCCCcEe-hhhhhhhhcc---cCCcccccccc
Confidence            344689999999888877 46  7999 9999876654   69999999874

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=95.08  E-value=0.0081  Score=60.95  Aligned_cols=49  Identities=33%  Similarity=0.737  Sum_probs=42.8

Q ss_pred             cccccccccccccceEE-eCCCCccchHHhHHHHhccCCccccccccccce
Q 010439          455 SSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  504 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  504 (510)
                      ....|.+|+....+++. ..|||.| |..|+..+......||.|+..+...
T Consensus        20 ~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQA   69 (391)
T ss_pred             ccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchh
Confidence            44789999999999998 4999999 9999999988777999998877643

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.64  E-value=0.0087  Score=57.16  Aligned_cols=50  Identities=24%  Similarity=0.603  Sum_probs=42.8

Q ss_pred             cccccccccccceEEe-CCCCccchHHhHHHHhccCCccccccccccceeEe
Q 010439          457 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  507 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i  507 (510)
                      ..|.+|-.-+.++..+ -|-|-| |..|+.+.......||.|...|-+...+
T Consensus        16 itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~pl   66 (331)
T KOG2660|consen   16 ITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHPL   66 (331)
T ss_pred             eehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCcccc
Confidence            5899999998888766 499999 9999988887788999999988877644

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.61  E-value=0.017  Score=54.92  Aligned_cols=54  Identities=22%  Similarity=0.576  Sum_probs=40.1

Q ss_pred             cccccccccccccceEEe-CCCCccchHHhHHHHhccCCccccccccc--cceeEeee
Q 010439          455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLYT  509 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i--~~~~~i~~  509 (510)
                      +...|+||+....++..+ --|-+| |+.|+-.-....+.||+-..+.  +..+|+|.
T Consensus       299 ~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~  355 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLFN  355 (357)
T ss_pred             ccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHhc
Confidence            446899999987765544 458888 9999988877777999865444  56666663

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.60  E-value=0.28  Score=44.68  Aligned_cols=45  Identities=20%  Similarity=0.200  Sum_probs=23.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHc
Q 010439           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL   73 (510)
Q Consensus        21 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~   73 (510)
                      |--|+..-+++.+..++...       ++-.++|-+|+.+ +..+++.+|+..
T Consensus       157 ledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~-~K~dva~~lls~  201 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGN-AKEDVALYLLSK  201 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcc-cHHHHHHHHHhh
Confidence            34455555555544443321       1235666666654 556666666643

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.57  E-value=0.3  Score=43.16  Aligned_cols=138  Identities=17%  Similarity=0.103  Sum_probs=93.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCC
Q 010439           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (510)
Q Consensus        19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~   98 (510)
                      =.|..|+..+.+.+++.+-+...+-   -...++-.-.||+. .+.|+|+++   |-++...    +-.+-+-.|.....
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~-qkydiV~WI---~qnL~i~----~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEE-QKYDIVKWI---GQNLHIY----NPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHH-ccccHHHHH---hhccCCC----Cchhhhhhhhhccc
Confidence            4567788999999988876643211   13467788889987 889999998   3333332    23456677887777


Q ss_pred             HHHH----HHHHHCCCCCccCCCC--CCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439           99 EPTV----RLLLSCGANALVRNDD--CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (510)
Q Consensus        99 ~~~v----~~Ll~~gad~~~~d~~--g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~  172 (510)
                      .+..    .+++++...-...|..  -.--|..|+.+|....|...+++|.+++        .++|- .|+.+++.+|+.
T Consensus       117 lsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~--------~~vls-~Av~ynhRkIL~  187 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--------IIVLS-QAVKYNHRKILD  187 (192)
T ss_pred             hhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--------HHHHH-HHHHhhHHHHHH
Confidence            6652    2233332211011110  0124678999999999999999998876        28888 999999999999


Q ss_pred             HHhh
Q 010439          173 VVIP  176 (510)
Q Consensus       173 ~Ll~  176 (510)
                      +++.
T Consensus       188 yfi~  191 (192)
T PF03158_consen  188 YFIR  191 (192)
T ss_pred             Hhhc
Confidence            8874

These proteins may be involved in promoting survival of infected macrophages [].

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=94.17  E-value=0.046  Score=40.56  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             eEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          469 GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       469 ~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      ++---|.|.| ...|+.+|...++.||++|++..
T Consensus        49 v~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          49 VVWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             EEEEecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence            4444799999 99999999999899999998753

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.12  E-value=0.019  Score=57.81  Aligned_cols=50  Identities=22%  Similarity=0.606  Sum_probs=40.0

Q ss_pred             CCCcccccccccccccceEEeCCCCccchHHhHHHHhcc-----CCcccccccccc
Q 010439          452 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-----KGDCPVCRTKIN  502 (510)
Q Consensus       452 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----~~~Cp~Cr~~i~  502 (510)
                      +..++.+|.+|.|...+.+...|.|.| |..|+......     +-.||.|.....
T Consensus       532 enk~~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cccCceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCcccccccc
Confidence            344557999999999999999999999 99999666542     247999976553

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=94.06  E-value=0.022  Score=61.48  Aligned_cols=44  Identities=30%  Similarity=0.715  Sum_probs=37.7

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhccC--Ccccccccccc
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  502 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~  502 (510)
                      ..|.+|++ ...++..+|||.+ |.+|........  ..||+||..+.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHH
Confidence            68999999 8888899999999 999998877653  37999998775

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.76  E-value=0.034  Score=54.68  Aligned_cols=31  Identities=35%  Similarity=0.829  Sum_probs=25.7

Q ss_pred             ccccccccccc---ceEEeCCCCccchHHhHHHHh
Q 010439          457 SSCVICWEAPV---EGACVPCGHMAGCMSCLSEIK  488 (510)
Q Consensus       457 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~  488 (510)
                      ..|.||++...   ..+++||+|+| |..|....-
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY~  218 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDYF  218 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHH-HHHHHHHHH
Confidence            57999999854   47788999999 999986553

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.67  E-value=0.24  Score=45.07  Aligned_cols=95  Identities=11%  Similarity=0.054  Sum_probs=68.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCccCC----CCCCcHHHHHHH--cCCHHHHHHHHhcc-ccccc-cccccCCCC
Q 010439           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRN----DDCHTALGVARI--KGHINVVRAIESHI-CYFCG-WLREFYGPS  156 (510)
Q Consensus        85 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d----~~g~TpL~~A~~--~g~~~~v~~Ll~~g-a~~~~-~~~d~~g~t  156 (510)
                      .-.++|-++..++..+++.+||.. -+...+|    ..+.--+.|+..  .....++++.+++| +++|. -.+-..|.|
T Consensus       178 dA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdt  256 (284)
T PF06128_consen  178 DAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDT  256 (284)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcch
Confidence            346899999999999999999975 1111222    122223444443  34578999999999 56663 134567999


Q ss_pred             HHHHHhhhcCCHHHHHHHhhCCCCC
Q 010439          157 FLEALAPQLMSRKIWVVVIPCGTAN  181 (510)
Q Consensus       157 ~L~~~A~~~~~~~~~~~Ll~~ga~~  181 (510)
                      -|. -|.++++.+++.+||++||-.
T Consensus       257 MLD-NA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  257 MLD-NAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHH-hHHhcCcHHHHHHHHHcCccc
Confidence            999 899999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.60  E-value=0.017  Score=43.04  Aligned_cols=45  Identities=33%  Similarity=0.778  Sum_probs=21.7

Q ss_pred             ccccccccccc------ceEEe--CCCCccchHHhHHHHhcc-----------CCcccccccccc
Q 010439          457 SSCVICWEAPV------EGACV--PCGHMAGCMSCLSEIKAK-----------KGDCPVCRTKIN  502 (510)
Q Consensus       457 ~~C~iC~~~~~------~~~~~--pCgH~~~C~~C~~~~~~~-----------~~~Cp~Cr~~i~  502 (510)
                      ..|.||++..-      +.+.-  .|++.| ...|...|-..           .+.||.|+++|.
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            58999997632      23332  688888 99999888542           136999999885

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=93.59  E-value=0.072  Score=37.79  Aligned_cols=39  Identities=21%  Similarity=0.387  Sum_probs=28.8

Q ss_pred             cccccccccccceEEe-CCCCccchHHhHHHHhccC--Ccccc
Q 010439          457 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPV  496 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~Cp~  496 (510)
                      ..|+|.+..+.++|.- .|||.| ..+.+..+...+  .+||+
T Consensus        12 ~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   12 LKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred             cCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence            6899999999999875 899999 999999998433  37998

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.34  E-value=0.17  Score=47.29  Aligned_cols=32  Identities=28%  Similarity=0.617  Sum_probs=27.6

Q ss_pred             cccccccccccceEEeCCC----CccchHHhHHHHhc
Q 010439          457 SSCVICWEAPVEGACVPCG----HMAGCMSCLSEIKA  489 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~~  489 (510)
                      ..|.+|.|+..+.-|+.|-    |.| |+.|...-.+
T Consensus       269 LcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSResIK  304 (352)
T KOG3579|consen  269 LCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRESIK  304 (352)
T ss_pred             eeehhhhhhhccCceeecCCCcccce-ecccCHHHHH
Confidence            6899999999999999995    999 9999865443

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.24  E-value=0.038  Score=59.56  Aligned_cols=48  Identities=27%  Similarity=0.720  Sum_probs=36.9

Q ss_pred             Cccccccccccc-------ccceEEeCCCCccchHHhHHHHhccCC--cccccccccc
Q 010439          454 GSSSSCVICWEA-------PVEGACVPCGHMAGCMSCLSEIKAKKG--DCPVCRTKIN  502 (510)
Q Consensus       454 ~~~~~C~iC~~~-------~~~~~~~pCgH~~~C~~C~~~~~~~~~--~Cp~Cr~~i~  502 (510)
                      +...+|.||+..       .....+-.|.|.| ...|.-+|-+.++  .||+||..|+
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCccccccc
Confidence            344689999954       3344455799999 9999999987643  7999998775

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=92.60  E-value=0.07  Score=44.05  Aligned_cols=47  Identities=30%  Similarity=0.648  Sum_probs=38.8

Q ss_pred             cccccccccccceEEe----CCCCccchHHhHHHHhcc---CCccccccccccce
Q 010439          457 SSCVICWEAPVEGACV----PCGHMAGCMSCLSEIKAK---KGDCPVCRTKINQV  504 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~~~~---~~~Cp~Cr~~i~~~  504 (510)
                      .+|-||.|...+.-|+    =||-.+ |..|-..+|+.   -+.||+|+..+.+.
T Consensus        81 YeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   81 YECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             eeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCccccccccc
Confidence            7999999998888877    388888 99998888864   35899999988653

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=92.52  E-value=0.027  Score=53.03  Aligned_cols=43  Identities=28%  Similarity=0.863  Sum_probs=28.9

Q ss_pred             ccccccccccc--ceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          457 SSCVICWEAPV--EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       457 ~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      -.|.-| |.+.  -...+||.|+| |.+|+..-.  -+.||.|-..|-+
T Consensus        91 HfCd~C-d~PI~IYGRmIPCkHvF-Cl~CAr~~~--dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen   91 HFCDRC-DFPIAIYGRMIPCKHVF-CLECARSDS--DKICPLCDDRVQR  135 (389)
T ss_pred             Eeeccc-CCcceeeecccccchhh-hhhhhhcCc--cccCcCcccHHHH
Confidence            356656 3332  22367999999 999986644  2469999776654

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=92.02  E-value=0.089  Score=59.19  Aligned_cols=49  Identities=24%  Similarity=0.757  Sum_probs=37.9

Q ss_pred             Cccccccccccc---ccceEEeCCCCccchHHhHHHHhccCC----------ccccccccccc
Q 010439          454 GSSSSCVICWEA---PVEGACVPCGHMAGCMSCLSEIKAKKG----------DCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~----------~Cp~Cr~~i~~  503 (510)
                      +.+..|+||+..   ..-.+.+.|+|+| ...|..++....+          .||+|..+|..
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            344699999976   3455678999999 9999988876432          49999999864

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=91.65  E-value=0.076  Score=48.19  Aligned_cols=43  Identities=28%  Similarity=0.700  Sum_probs=32.5

Q ss_pred             cccccccccc---ccceEEe--C-CCCccchHHhHHHHhccCC-ccc--cccc
Q 010439          456 SSSCVICWEA---PVEGACV--P-CGHMAGCMSCLSEIKAKKG-DCP--VCRT  499 (510)
Q Consensus       456 ~~~C~iC~~~---~~~~~~~--p-CgH~~~C~~C~~~~~~~~~-~Cp--~Cr~  499 (510)
                      +..|+||...   ..++.++  | |-|.. |..|..++-...+ .||  -|..
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence            3589999854   2445544  6 99999 9999999987644 899  6754

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=91.13  E-value=0.12  Score=43.06  Aligned_cols=32  Identities=25%  Similarity=0.516  Sum_probs=26.6

Q ss_pred             ccccccccccc---ceEEeCCC------CccchHHhHHHHhc
Q 010439          457 SSCVICWEAPV---EGACVPCG------HMAGCMSCLSEIKA  489 (510)
Q Consensus       457 ~~C~iC~~~~~---~~~~~pCg------H~~~C~~C~~~~~~  489 (510)
                      .+|.||+++.-   -+|.++||      |+| |..|..+|.+
T Consensus        27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw~~   67 (134)
T PF05883_consen   27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRWRR   67 (134)
T ss_pred             eeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHHHh
Confidence            58999999854   47788998      777 9999999953

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=89.74  E-value=0.27  Score=46.63  Aligned_cols=50  Identities=8%  Similarity=-0.074  Sum_probs=41.0

Q ss_pred             ccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEe
Q 010439          456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  507 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i  507 (510)
                      ..+|.+|-+.....+..||+|..+|.+|+..  .....||.|..-+-..++|
T Consensus       343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             hcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence            3689999999999999999999999999982  3346899997766555555

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.97  E-value=0.98  Score=34.15  Aligned_cols=48  Identities=21%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHc
Q 010439           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL   73 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~   73 (510)
                      ...|..|+..|+.++++.+++.+ .++      ...|..|+.. .+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~-H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKS-HNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHH-hhHHHHHHHHHh
Confidence            45667777777777777777654 221      4457777775 777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=88.94  E-value=0.27  Score=38.57  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=26.6

Q ss_pred             eEEeCCCCccchHHhHHHHhccCCcccccccc
Q 010439          469 GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK  500 (510)
Q Consensus       469 ~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~  500 (510)
                      ++---|.|.| .+.|+.+|.+++..||+|.+.
T Consensus        76 VaWG~CNHaF-H~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   76 VAWGVCNHAF-HFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             EEeeecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence            4444799999 999999999998999999764

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=88.75  E-value=0.47  Score=47.02  Aligned_cols=28  Identities=39%  Similarity=0.898  Sum_probs=20.6

Q ss_pred             CCCccchHHhHHHHhc-------------cCCcccccccccc
Q 010439          474 CGHMAGCMSCLSEIKA-------------KKGDCPVCRTKIN  502 (510)
Q Consensus       474 CgH~~~C~~C~~~~~~-------------~~~~Cp~Cr~~i~  502 (510)
                      |+-+. |.+|..+|-.             ++..||.||++++
T Consensus       311 CRPmW-C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMW-CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchH-HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            44555 9999988853             2336999999876

They are purported to be transmembrane protein-precursors but their function is unknown.

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=87.59  E-value=0.52  Score=40.52  Aligned_cols=47  Identities=21%  Similarity=0.383  Sum_probs=35.0

Q ss_pred             cccccccccccccceEEeCCCC----ccchHHhHHHHhccCC--cccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGH----MAGCMSCLSEIKAKKG--DCPVCRTKIN  502 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH----~~~C~~C~~~~~~~~~--~Cp~Cr~~i~  502 (510)
                      .+..|-||++.... ...||..    .++..+|..+|...++  .|++|+.+..
T Consensus         7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            34689999988653 3458774    2348999999987653  7999998774

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=87.58  E-value=0.18  Score=37.14  Aligned_cols=28  Identities=29%  Similarity=0.694  Sum_probs=23.5

Q ss_pred             CCCCccchHHhHHHHhcc---CCccccccccc
Q 010439          473 PCGHMAGCMSCLSEIKAK---KGDCPVCRTKI  501 (510)
Q Consensus       473 pCgH~~~C~~C~~~~~~~---~~~Cp~Cr~~i  501 (510)
                      -|.|.| -..|+.+|...   +..||+||+..
T Consensus        50 ~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   50 YCLHAF-HAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             HHHHHH-HHHHHHHHhcCccccccCCcchhee
Confidence            699999 99999999764   35799999864

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=87.41  E-value=3.3  Score=36.74  Aligned_cols=113  Identities=19%  Similarity=0.128  Sum_probs=75.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHH----HHHHHcCCCccccCCCCCCChHHH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA----KTLIELGANINAYRPGGRGGTPLH   91 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v----~~Ll~~ga~~n~~~~d~~g~TpLh   91 (510)
                      ..++.+-.||+..+.++|+++=+   ++...  +-.+-.-+|..+ .+.++.    .++.++...-...|++.--.--|.
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~q---nL~i~--~~~~iFdIA~~~-kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~  148 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQ---NLHIY--NPEDIFDIAFAK-KDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLE  148 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhh---ccCCC--Cchhhhhhhhhc-cchhHHHHHHHHHHhhcccccccCHHHHHHHHHH
Confidence            45688899999999999999933   33222  223445566665 655542    223333211111111111124578


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 010439           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  140 (510)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~  140 (510)
                      +|+..|-...+.-.|++|.+++.      +.|..|+..+|..++.+++.
T Consensus       149 ~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  149 KAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            89999999999999999988653      79999999999999998864

These proteins may be involved in promoting survival of infected macrophages [].

>PHA02862 5L protein; Provisional

Probab=87.26  E-value=0.5  Score=39.70  Aligned_cols=45  Identities=27%  Similarity=0.498  Sum_probs=34.7

Q ss_pred             cccccccccccceEEeCCCC----ccchHHhHHHHhccC--Ccccccccccc
Q 010439          457 SSCVICWEAPVEGACVPCGH----MAGCMSCLSEIKAKK--GDCPVCRTKIN  502 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH----~~~C~~C~~~~~~~~--~~Cp~Cr~~i~  502 (510)
                      ..|-||++...+. .-||..    .++..+|..+|...+  ..|++|+.+..
T Consensus         3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            5899999986544 468874    445899999998754  37999998774

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.86  E-value=0.41  Score=47.25  Aligned_cols=40  Identities=23%  Similarity=0.518  Sum_probs=30.3

Q ss_pred             eEEeCCCCccchHHhHHHHhccC---Cccccccccc--cceeEeee
Q 010439          469 GACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKI--NQVIRLYT  509 (510)
Q Consensus       469 ~~~~pCgH~~~C~~C~~~~~~~~---~~Cp~Cr~~i--~~~~~i~~  509 (510)
                      ++-+.|||++ |.+-+.++.+..   -+||+|-...  ....|||+
T Consensus       350 Pm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F  394 (394)
T KOG2817|consen  350 PMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF  394 (394)
T ss_pred             Ceeeecccee-cHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence            5567899999 999999998753   3799996554  34666653

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=86.29  E-value=0.22  Score=49.11  Aligned_cols=54  Identities=28%  Similarity=0.615  Sum_probs=0.0

Q ss_pred             ccccccccccc-------------------ccceEEeCCCCccchHHhHHHHhcc---------CCccccccccccc---
Q 010439          455 SSSSCVICWEA-------------------PVEGACVPCGHMAGCMSCLSEIKAK---------KGDCPVCRTKINQ---  503 (510)
Q Consensus       455 ~~~~C~iC~~~-------------------~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~Cp~Cr~~i~~---  503 (510)
                      ....|++|+..                   +...+|.||||++ =+..+.-|.+.         ...||.|-.++..   
T Consensus       327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g  405 (416)
T PF04710_consen  327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG  405 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence            35799999852                   3466788999997 66677777652         1359999999874   


Q ss_pred             eeEeee
Q 010439          504 VIRLYT  509 (510)
Q Consensus       504 ~~~i~~  509 (510)
                      ++|+++
T Consensus       406 ~vrLiF  411 (416)
T PF04710_consen  406 YVRLIF  411 (416)
T ss_dssp             ------
T ss_pred             ceEEEE
Confidence            677654

; PDB: 3EGB_B 3EGA_A.

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.19  E-value=0.38  Score=45.22  Aligned_cols=42  Identities=26%  Similarity=0.638  Sum_probs=33.6

Q ss_pred             cccccccccccceEEeC-CCCccchHHhHHHHhc-cCCccccccc
Q 010439          457 SSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKA-KKGDCPVCRT  499 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~-~~~~Cp~Cr~  499 (510)
                      ..|+.|....++++-.| |+|.| |.+|+..... ...+||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence            58999999888888775 78999 9999975543 3458999965

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=86.04  E-value=0.29  Score=39.85  Aligned_cols=31  Identities=29%  Similarity=0.768  Sum_probs=23.4

Q ss_pred             cccccccccccccce--EEeCCCCccchHHhHHH
Q 010439          455 SSSSCVICWEAPVEG--ACVPCGHMAGCMSCLSE  486 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~--~~~pCgH~~~C~~C~~~  486 (510)
                      +...|.||.......  +..||||.+ +..|+.|
T Consensus        77 ~~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~r  109 (109)
T PF10367_consen   77 ESTKCSVCGKPLGNSVFVVFPCGHVV-HYSCIKR  109 (109)
T ss_pred             CCCCccCcCCcCCCceEEEeCCCeEE-ecccccC
Confidence            346899999886543  455999999 9999753

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PHA03096 p28-like protein; Provisional

Probab=85.70  E-value=0.46  Score=45.75  Aligned_cols=44  Identities=20%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             cccccccccc--------cceEEeCCCCccchHHhHHHHhccC------Cccccccccc
Q 010439          457 SSCVICWEAP--------VEGACVPCGHMAGCMSCLSEIKAKK------GDCPVCRTKI  501 (510)
Q Consensus       457 ~~C~iC~~~~--------~~~~~~pCgH~~~C~~C~~~~~~~~------~~Cp~Cr~~i  501 (510)
                      ..|.|||+..        ....+-.|-|.| |..|+..|...+      +.||.|+..+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHHhhhhcccCccccchhhHH
Confidence            4799999863        234455899999 999999887642      2455555544

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.24  E-value=0.62  Score=48.60  Aligned_cols=36  Identities=31%  Similarity=0.781  Sum_probs=29.4

Q ss_pred             ccccccccc----ccceEEeCCCCccchHHhHHHHhccCCccc
Q 010439          457 SSCVICWEA----PVEGACVPCGHMAGCMSCLSEIKAKKGDCP  495 (510)
Q Consensus       457 ~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp  495 (510)
                      ..|.||+..    ...+|++-|||.+ |..|+..+...  .||
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn~--scp   51 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYNA--SCP   51 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhhc--cCC
Confidence            589999755    3568888999999 99999998764  477

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=81.25  E-value=2.7  Score=31.69  Aligned_cols=46  Identities=15%  Similarity=0.114  Sum_probs=23.6

Q ss_pred             HHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHC
Q 010439           53 PLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC  108 (510)
Q Consensus        53 pL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~  108 (510)
                      -|.+|+. ||+.|+++.+++.+ .+     +   ...|..|+..-+-+++++|++.
T Consensus         9 tl~~Ai~-GGN~eII~~c~~~~-~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAII-GGNFEIINICLKKN-KP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHh-CCCHHHHHHHHHHh-cc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            3455554 45566666555443 11     1   2345556555555666665553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=80.99  E-value=0.68  Score=43.76  Aligned_cols=45  Identities=31%  Similarity=0.731  Sum_probs=31.9

Q ss_pred             cccccccccccc---eEEeCCCCccchHHhHHHHhc------------------c-----CCcccccccccc
Q 010439          457 SSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKA------------------K-----KGDCPVCRTKIN  502 (510)
Q Consensus       457 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~------------------~-----~~~Cp~Cr~~i~  502 (510)
                      ..|+||+--+.+   ....+|-|.+ .+.|..+...                  .     +..||+||..|.
T Consensus       116 gqCvICLygfa~~~~ft~T~C~Hy~-H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  116 GQCVICLYGFASSPAFTVTACDHYM-HFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CceEEEEEeecCCCceeeehhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            468888876543   3456999999 8999766532                  0     125999999885

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=80.14  E-value=0.49  Score=44.95  Aligned_cols=52  Identities=13%  Similarity=0.258  Sum_probs=42.0

Q ss_pred             ccccccccccccceEEeCCCCccchHHhHHHHhccC-CccccccccccceeEe
Q 010439          456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQVIRL  507 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~~~~i  507 (510)
                      ...|.+|++........+|+|.++|..|....+.++ +.|++|...+.....|
T Consensus       136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i  188 (394)
T KOG2113|consen  136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI  188 (394)
T ss_pred             ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence            357999999999999999999999999987775443 4699998776665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	510
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-12
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		9e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-05
2yhn_A	79	The Idol-Ube2d Complex Mediates Sterol-Dependent De		3e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		5e-05
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		6e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-04
2hdp_A	63	Solution Structure Of Hdm2 Ring Finger Domain Lengt		2e-04
2vje_A	64	Crystal Structure Of The Mdm2-Mdmx Ring Domain Hete		2e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-04
3eb5_A	74	Structure Of The Ciap2 Ring Domain Length = 74		6e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-04
1uoh_A	226	Human Gankyrin Length = 226		7e-04

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L S+GA +   D +G+TPL  A  ++G   V K LI  GA++NA    GR  
Sbjct: 48  GHKEVVKLLISKGADVNAKDSDGRTPLHHAA-ENGHKEVVKLLISKGADVNAKDSDGR-- 104
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPLHHAA+ G +  V+LL+S GA+    + D  T L +AR  G+  VV+ +E       G
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ----GG 160
Query: 148 WL 149
           WL
Sbjct: 161 WL 162

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA    GR  
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
           TPLH AA+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+ +
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L S+GA +   D +G+TPL  A  + G   + K LI  GA++NA    GR  
Sbjct: 48  GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE-GHKEIVKLLISKGADVNAKDSDGR-- 104
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPLH+AAK G +  V+LL+S GA+    + D  T L +AR  G+  +V+ +E       G
Sbjct: 105 TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ----GG 160
Query: 148 WL 149
           WL
Sbjct: 161 WL 162

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 69
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 70  -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 82  -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 69
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 70  -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L SQGA     D +GKTPL +A  ++G   V K L+  GA+ NA    G+  
Sbjct: 48  GHKEVVKLLLSQGADPNAKDSDGKTPLHLAA-ENGHKEVVKLLLSQGADPNAKDSDGK-- 104
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPLH AA+ G +  V+LLLS GA+    + D  T L +AR  G+  VV+ +E       G
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ----GG 160
Query: 148 WL 149
           WL
Sbjct: 161 WL 162

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D +G TPL +A   +G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNATDNDGYTPLHLAA-SNGHLEIVEVLLKNGADVNA--SDLTG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    ++D HT L +A   GH+ +V  +  H
Sbjct: 81  ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L S+GA     D +G+TPL  A  ++G   + K L+  GA+ NA    GR  
Sbjct: 48  GHKEIVKLLLSKGADPNAKDSDGRTPLHYAA-ENGHKEIVKLLLSKGADPNAKDSDGR-- 104
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPLH+AA+ G +  V+LLLS GA+    + D  T L +AR  G+  +V+ +E       G
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ----GG 160
Query: 148 WL 149
           WL
Sbjct: 161 WL 162

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA+     G
Sbjct: 24  AGQDDEVRILMANGADVNATDWLGHTPLHLAA-KTGHLEIVEVLLKYGADVNAW--DNYG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA  G    V +LL  GA+   ++ +  T L +A   GH+ +V  +
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           G+TPL +A  + G + V K L+E GA++NA    GR  TPLH AA+ G    V+LLL  G
Sbjct: 2   GRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58
Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAI 138
           A+   ++ +  T L +A   GH+ VV+ +
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NAY     G
Sbjct: 24  AGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAYDT--LG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA  G    V +LL  GA+   ++D+  T L +A  +GH+ +V  +
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNAEDTYGDTPLHLAAR-VGHLEIVEVLLKNGADVNAL--DFSG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AAKRG    V +LL  GA+    +    T L +A   GH+ +V  +
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNARDFTGWTPLHLAA-HFGHLEIVEVLLKNGADVNA--KDSLG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+RG    V +LL  GA+    +    T L +A  +GH+ +V  +
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNASDHVGWTPLHLAAY-FGHLEIVEVLLKNGADVNA--DDSLG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA RG    V +LL  GA+    + +  T L +A   GH+ +V  +  H
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
           N  + + +  S    L+   I G ++ +  L   GA +   DK G TPL +A +  G + 
Sbjct: 36  NGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAAL-YGHLE 94
Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           + + L++ GA++NA      G TPLH AA  G    V +LL  GA+   ++    TA  +
Sbjct: 95  IVEVLLKNGADVNA--TDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 126 ARIKGHINVVRAIE 139
           +   G+ ++   ++
Sbjct: 153 SIDNGNEDLAEILQ 166

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 8/109 (7%)
Query: 31  DAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           + ++ L  +GA ++ +D K G++PLI A  ++ L ++ + L++ GAN+NA    G   + 
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMVQLLLQHGANVNAQMYSG--SSA 186
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCH--TALGVARIKGHINVVR 136
           LH A+ RGL P VR L+  GA++ ++N  CH  T L VAR +  I+++R
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKN--CHNDTPLMVARSRRVIDILR 233

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA     D  G+TPL +A    G + + + L+  GA++NA    G  
Sbjct: 12  AGQDDEVRILMANGADANAYDHYGRTPLHMAAA-VGHLEIVEVLLRNGADVNAVDTNGT- 69
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+   ++    T L +A   GH+ +V  +  H
Sbjct: 70  -TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAIDIXG-- 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    +    T L +A I GH+ +V  +  H
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAIDI--MG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    +    T L +A I GH+ +V  +  H
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 24  AGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAVDHAGM- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPL  AA  G    V +LL  GA+    + + HT L +A + GH+ +V  +
Sbjct: 82  -TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D +G TPL +A    G   + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNAHDDQGSTPLHLAAW-IGHPEIVEVLLKHGADVNARDTDG-- 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+   ++    T L +A  +GH+ +V  +  H
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A   SG + + + L++ GA+++A    G  
Sbjct: 24  AGQDDEVRILMANGADVNAADNTGTTPLHLAAY-SGHLEIVEVLLKHGADVDASDVFGY- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    + D  T L +A   G++ +V  +  H
Sbjct: 82  -TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  G TPL +A  + G + + + L++ GA++NA 
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAAN-GQLEIVEVLLKNGADVNAS 68
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              G   TPLH AA  G    V +LL  GA+    +    T L +A + G + +V  +  
Sbjct: 69  DSAGI--TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 141 H 141
           H
Sbjct: 127 H 127

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           +G  +  + L+  GA++NA    G   TPLH AA  G    V +LL  GA+    +    
Sbjct: 16  AGQDDEVRILMANGADVNATDDNGL--TPLHLAAANGQLEIVEVLLKNGADVNASDSAGI 73
Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165
           T L +A   GH+ +V  +  H      + R  + P  L AL+ QL
Sbjct: 74  TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQL 118

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  +D  G TPL +A + SG + + + L++ GA+++A      G
Sbjct: 24  AGQDDEVRILIANGADVNAVDNTGLTPLHLAAV-SGHLEIVEVLLKHGADVDA--ADVYG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA  G    V +LL  GA+    +    T L +A  +GH+ +V  +
Sbjct: 81  FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +  +++G + + + L++  A++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNANDWFGITPLHLV-VNNGHLEIIEVLLKYAADVNA--SDKSG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA RG    V +LL  GA+    +   +T L +A   GH+ +V  +
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 24  WVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
           W  A G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y  
Sbjct: 58  WAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD- 115
Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
              GGTPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+
Sbjct: 116 -WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 174
Query: 143 CYFCGWLRE 151
                 ++E
Sbjct: 175 LKLLQNIKE 183

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y     GG
Sbjct: 47  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 103
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+     
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Query: 148 WLRE 151
            ++E
Sbjct: 164 NIKE 167

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  MD  G TPL +A    G + + + L++ GA++NA    GR 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNASDSWGR- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  MD  G TPL +A    G + + + L++ GA++NA    GR 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNARDIWGR- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  MD  G TPL +A    G + + + L++ GA++NA    GR 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNASDIWGR- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  +D++G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNALDEDGLTPLHLAA-QLGHLEIVEVLLKYGADVNA--EDNFG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA RG    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 45  WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
           W  K+G TPL  A  + G     K L+  GA++NA    G   TPLH AAK G    V+L
Sbjct: 4   WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHAEIVKL 60
Query: 105 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           LL+ GA+   R+ D +T   +A+  GH  +V+ +++
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y     GG
Sbjct: 45  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 101
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+
Sbjct: 102 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 156

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           +GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN  +P   G
Sbjct: 50  SGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENGANIN--QPDNEG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
             PLH AA  G       L+S GA+    N +  T L +
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D++G TPL +A  D   + + + L++ GA++NA+     G
Sbjct: 24  AGQDDEVRILMANGADVNANDRKGNTPLHLAA-DYDHLEIVEVLLKHGADVNAH--DNDG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 81  STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK G TPL +A M+  L  + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHL-EIVEVLLKNGADVNAIDAIGE- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH  A  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  V   ++D ++ L  +G S       G TPL +A   +  + VA++L++ G + NA 
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ-VEVARSLLQYGGSANA- 240
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
               +G TPLH AA+ G    V LLLS  AN  + N    T L +   +GH+ V   +  
Sbjct: 241 -ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Query: 141 HICYFCGWLREFYGP 155
           H        R  Y P
Sbjct: 300 HGVMVDATTRMGYTP 314

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A M  G + + + L++ GA++NA   G  G
Sbjct: 24  AGQDDEVRILTANGADVNANDYWGHTPLHLAAM-LGHLEIVEVLLKNGADVNA--TGNTG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA       V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN Y     GG
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIY--DWNGG 103
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
           TPL +A +      V  LL+ GA+     D  +T + +A   G+  V + IE+HI 
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 18  DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
           + LL+   I GD+ ++  L   G+     D  G TPL  AC + G + V + L++  A +
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC-NHGHLKVVELLLQHKALV 69
Query: 78  NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
           N    G +  +PLH AAK G    V+LLLS GA+
Sbjct: 70  NT--TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN Y     GG
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIYD--WNGG 103
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
           TPL +A        V  LL+ GA+     D  +T + +A   G+  V + IE+HI 
Sbjct: 104 TPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           C++C E  +     PCGH   C SC +++++    CPVCR+++  V  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVY 66

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 22  YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           + W +  GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA 
Sbjct: 6   FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 63
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
            P     TPL  A   G    V+LLLS GA+  V+  D  TAL
Sbjct: 64  -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
           L S+G+++   D  GKTPL+ + +  G   ++  L+E GAN+N     G   TPL  A+K
Sbjct: 87  LLSKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVNDRNLEGE--TPLIVASK 143
Query: 96  RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            G    V+ LL  GA+   R+    TA   ARI G   V++
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 54  LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           L++  + +  +++ + L+E GAN+N     G G TPLH+A +   E  V LLL  GA+ +
Sbjct: 28  LLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 114 VRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 160
           +R  +  T   +A I G + +++   S     + C F G+       +F+EA
Sbjct: 87  LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 132

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           MN   + Q+K   L+    AG VD    L   GA+++   ++ +TPL+ A  ++ L    
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL-EAV 60
Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
           K LI+ GA ++       G T LH AAK+G    V+ LLS G   +   DD
Sbjct: 61  KYLIKAGALVDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D+ G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADVNAV--DAIG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
            TPLH AA  G      +LL  GA+   ++    TA  ++
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 22  YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           + W +  GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA 
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 68
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
            P     TPL  A   G    V+LLLS GA+  V+  D  TA 
Sbjct: 69  -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA      G
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGXDEIVKALLVKGAHVNAVNQ--NG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ +V     HI  F
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV-----HILLF 160

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 54  LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           L++  + +  +++ + L+E GAN+N     G G TPLH+A +   E  V LLL  GA+ +
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 114 VRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 160
           +R  +  T   +A I G + +++   S     + C F G+       +F+EA
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 112

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         TP
Sbjct: 55  VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 111
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           LH AA +G     +LLL  GA+   +N D +T L + +
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         TP
Sbjct: 57  VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 113
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           LH AA +G     +LLL  GA+   +N D +T L + +
Sbjct: 114 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+   + G  D I  L   GA+    + +   PL +AC   G   V K L++  A  N  
Sbjct: 90  LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ-QGHFQVVKCLLDSNAKPN-- 146
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           +    G TPL +A   G    V LLL  GA+    N+  +TAL  A I+ H+ VV  +  
Sbjct: 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL 206
Query: 141 H 141
           H
Sbjct: 207 H 207

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA      G
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLVKGAHVNAVNQ--NG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ +V     HI  F
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV-----HILLF 160

>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain Length = 63

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 459 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 10  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61

>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer Length = 64

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 459 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 11  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         TP
Sbjct: 59  VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 115
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           LH AA +G     +LLL  GA+   +N D +T L + +
Sbjct: 116 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153

>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 458 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           +C +C +  V    +PCGH+  C  C   ++     CP+CR+ I   +R +
Sbjct: 26  TCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIKGTVRTF 72

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA +NA      G
Sbjct: 51  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLGKGAQVNAVNQ--NG 107
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ ++  +
Sbjct: 108 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
          AG  D +R L + GA +   DK G TPL +A  + G + V K L+E GA++NA    G+
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVNAQDKFGK 73

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA +NA      G
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLGKGAQVNAVNQ--NG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ ++  +
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	510
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-09
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	1e-17
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	1e-16
2rfa_A	232	Transient receptor potential cation channel subfa	4e-15
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	1e-13
2rfa_A	232	Transient receptor potential cation channel subfa	4e-12
2rfa_A	232	Transient receptor potential cation channel subfa	6e-05
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	6e-16
2pnn_A	273	Transient receptor potential cation channel subfa	3e-15
2pnn_A	273	Transient receptor potential cation channel subfa	5e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-11
2pnn_A	273	Transient receptor potential cation channel subfa	3e-10
2pnn_A	273	Transient receptor potential cation channel subfa	4e-10
2etb_A	256	Transient receptor potential cation channel subfam	8e-15
2etb_A	256	Transient receptor potential cation channel subfam	3e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	1e-11
2etb_A	256	Transient receptor potential cation channel subfam	9e-06
2ea5_A	68	Cell growth regulator with ring finger domain prot	1e-14
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	1e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	9e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-04
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	7e-09
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	4e-08
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	6e-07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	9e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	4e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	9e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	6e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-04
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	8e-04

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (257), Expect = 4e-26
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD+ ++  L   G+     D  G TPL  AC   G + V + L++  A +N    G +  
Sbjct: 21  GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNT--TGYQND 77

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +PLH AAK G    V+LLLS GA+    N      +     +   +++   E +
Sbjct: 78  SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.6 bits (195), Expect = 9e-18
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           +  G+T L +A    G I   + L++ G++ N     G   TPLH A   G    V LLL
Sbjct: 7   NHRGETLLHIAS-IKGDIPSVEYLLQNGSDPNVKDHAGW--TPLHEACNHGHLKVVELLL 63

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
              A          + L  A   GH+++V+
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVK 93

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L    A +     +  +PL  A   +G +++ K L+  GA+ NA    G   
Sbjct: 54  GHLKVVELLLQHKALVNTTGYQNDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNIFGL-- 110

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
            P+ +     ++  + L     ++
Sbjct: 111 RPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           G +        RG T LH A+ +G  P+V  LL  G++  V++    T L  A   GH+ 
Sbjct: 1   GIDPFT---NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK 57

Query: 134 VVR 136
           VV 
Sbjct: 58  VVE 60

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN Y   G   
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYDWNGG-- 103

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL +A +      V  LL+ GA+     D  +T + +A   G+  V + IE+H
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.1 bits (230), Expect = 5e-22
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 28  GDVDAIRALRSQGASLE-WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G++D ++    +G +L    D+ G TPLI A    G I   + L+E GA+ +        
Sbjct: 13  GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHILAKERE- 70

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            + L  A+  G    V LLL    +  + + +  T L  A    H+  V 
Sbjct: 71  -SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.4 bits (197), Expect = 1e-17
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +  L  +   +   D  G TPL+ A      +   + L+  GA++        G 
Sbjct: 80  GYTDIVGLLLERDVDINIYDWNGGTPLLYAVR-GNHVKCVEALLARGADLTT--EADSGY 136

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
           TP+  A   G     +++ +        N     
Sbjct: 137 TPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 72.8 bits (180), Expect = 3e-15
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
               +       G ++  K  +  G N +N     G   TPL  A+  G   TVR LL  
Sbjct: 2   DSLSIHQLAA-QGELDQLKEHLRKGDNLVNKPDERGF--TPLIWASAFGEIETVRFLLEW 58

Query: 109 GANALVRNDDCHTALGVARIKGHINVVR 136
           GA+  +   +  +AL +A   G+ ++V 
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVG 86

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 98.6 bits (247), Expect = 2e-24
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y   G   
Sbjct: 47  GQIAVVEFLLQNGADPQLLGKGRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGG-- 103

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G++  +     Q   +   D+EG TPL+ A    G I V + L++ GA+      G    
Sbjct: 14  GEMLYLATRIEQENVINHTDEEGFTPLMWAAA-HGQIAVVEFLLQNGADPQLLGKGRE-- 70

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           + L  A  +G    V++LL CG +    + +  T L  A    H+  V+
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
               +       G +    T IE    IN     G   TPL  AA  G    V  LL  G
Sbjct: 3   NSLSVHQLAA-QGEMLYLATRIEQENVINHTDEEGF--TPLMWAAAHGQIAVVEFLLQNG 59

Query: 110 ANALVRNDDCHTALGVARIKGHINVVR 136
           A+  +      +AL +A  KG+ ++V+
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVK 86

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 78.6 bits (195), Expect = 2e-17
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D ++ L   G  +   D  G TPL+ A      +   K L+E GA+         G 
Sbjct: 80  GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH-GNHVKCVKMLLESGADPTI--ETDSGY 136

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
             +  A   G     +++ S     L    +
Sbjct: 137 NSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 61.6 bits (151), Expect = 2e-11
 Identities = 11/53 (20%), Positives = 18/53 (33%)

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           G     +H  A +G    +   +         +++  T L  A   G I VV 
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE 53

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 98.7 bits (247), Expect = 1e-23
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G    +  L ++G  ++ MD+ G TPL+ A   +  ++  + L+    ++N         
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKN 178

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH A   G    + LLL  GAN   +N    +AL +A+ + ++ ++  ++  
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 94.4 bits (236), Expect = 3e-22
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  +  R L   G  +   DKE  T L  A + +  I++ K  I  GA ++    G    
Sbjct: 20  GIYERCRELVEAGYDVRQPDKENVTLLHWAAI-NNRIDLVKYYISKGAIVDQ-LGGDLNS 77

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH A ++G    V  L+  GA+  + + +  + + +A   GH ++V 
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 85.2 bits (212), Expect = 5e-19
 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
             +D ++   S+GA ++ +  +   TPL  A    G +++   L++ GA+ +     G G
Sbjct: 53  NRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT-RQGHLSMVVQLMKYGADPSL--IDGEG 109

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESH 141
            + +H AA+ G    V  L++ G +  + + +  T L  A  + H ++  R + + 
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 81.3 bits (202), Expect = 1e-17
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           +D      ++ A    G+    + L+E G ++    P     T LH AA       V+  
Sbjct: 5   IDDYSTWDIVKATQ-YGIYERCRELVEAGYDVRQ--PDKENVTLLHWAAINNRIDLVKYY 61

Query: 106 LSCGANALVRNDDC-HTALGVARIKGHINVVR 136
           +S GA       D   T L  A  +GH+++V 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 4e-14
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 30  VDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
           VD  R L +   S+   DK    T L  A + +G   V   L+E GAN++A     +G +
Sbjct: 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEAGANVDA--QNIKGES 212

Query: 89  PLHHAAKRGLEPTVRLLLSCGAN 111
            L  A +R     +  L      
Sbjct: 213 ALDLAKQRKNVWMINHLQEARQA 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 76  NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           ++            +  A + G+    R L+  G +    + +  T L  A I   I++V
Sbjct: 1   HMTH--IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLV 58

Query: 136 R 136
           +
Sbjct: 59  K 59

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.0 bits (113), Expect = 4e-06
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           G+   I  L   GA+++  + +G++ L +A      + +   L E       
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQ-RKNVWMINHLQEARQAKGY 238

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 93.9 bits (235), Expect = 3e-23
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA    GR  
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH AA+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.5 bits (200), Expect = 2e-18
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           G+TPL +A   +G + V K L+E GA++NA    GR  TPLH AA+ G    V+LLL  G
Sbjct: 2   GRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           A+   ++ +  T L +A   GH+ VV+ +   
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 77.4 bits (192), Expect = 2e-17
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A   +G + V K L+E GA++NA    GR  
Sbjct: 46  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGR-- 102

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA 110
           TPLH AA+ G    V+LLL  GA
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAGA 125

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 94.4 bits (236), Expect = 3e-23
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ +R L   GA    +++ G+ P+ V  M  G   VA+ L+  GA  N         
Sbjct: 23  GQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNC--ADPATL 78

Query: 88  T-PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T P+H AA+ G   T+ +L   GA   V +      + +A  +GH ++ R + + 
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 78.6 bits (195), Expect = 9e-18
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
              +  +       L  A    G +   + L+E GA+ NA    GR   P+        +
Sbjct: 2   SPGIHMLGGSSDAGLATAAA-RGQVETVRQLLEAGADPNALNRFGR--RPIQVMMMGSAQ 58

Query: 100 PTVRLLLSCGANALVRNDDCHT-ALGVARIKGHINVVR 136
               LLL  GA     +    T  +  A  +G ++ + 
Sbjct: 59  -VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKT-PLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G       L   GA     D    T P+  A    G ++    L   GA ++       G
Sbjct: 55  GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDV--CDAWG 111

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGAN 111
             P+  A ++G     R L +   +
Sbjct: 112 RLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 62.1 bits (152), Expect = 7e-12
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
              I+    GG     L  AA RG   TVR LL  GA+    N      + V  + G   
Sbjct: 2   SPGIHM--LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQ 58

Query: 134 VVRAIESH 141
           V   +  H
Sbjct: 59  VAELLLLH 66

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 94.9 bits (237), Expect = 3e-23
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ +RAL   GA+    +  G+ P+ V  M  G   VA+ L+  GA  N         
Sbjct: 23  GRVEEVRALLEAGANPNAPNSYGRRPIQVMMM--GSARVAELLLLHGAEPNC--ADPATL 78

Query: 88  T-PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T P+H AA+ G   T+ +L   GA   VR+      + +A   GH +V R + + 
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 82.9 bits (206), Expect = 5e-19
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 9/109 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKT-PLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G       L   GA     D    T P+  A    G ++    L   GA ++       G
Sbjct: 55  GSARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDV--RDAWG 111

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
             P+  A + G     R L +                 +   +G  ++ 
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
            +     L  A    G +   + L+E GAN NA  P   G  P+             LLL
Sbjct: 9   MEPSADWLATAAA-RGRVEEVRALLEAGANPNA--PNSYGRRPIQVMMMGSAR-VAELLL 64

Query: 107 SCGANALVRNDDCHT-ALGVARIKGHINVVRA 137
             GA     +    T  +  A  +G ++ +  
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 71  IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 130
           +E  A  +           L  AA RG    VR LL  GAN    N      + V  + G
Sbjct: 1   MEPAAGSSMEP----SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMG 55

Query: 131 HINVVRAIESH 141
              V   +  H
Sbjct: 56  SARVAELLLLH 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 93.6 bits (234), Expect = 4e-23
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA  P     
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA--PDKHHI 74

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPL  A   G    V+LLLS GA+  V+  D  TA      +    +++
Sbjct: 75  TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.8 bits (193), Expect = 1e-17
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           +        + A   +G ++  K  +  G ++N    GGR   PLH+AA  G    +  L
Sbjct: 3   LGSMCDKEFMWAL-KNGDLDEVKDYVAKGEDVNRTLEGGR--KPLHYAADCGQLEILEFL 59

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVVR 136
           L  GA+    +    T L  A  +GH++ V+
Sbjct: 60  LLKGADINAPDKHHITPLLSAVYEGHVSCVK 90

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 94.4 bits (236), Expect = 5e-23
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 28  GDVDAIRAL-RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           GDV  +R L   +    + +++ GKT L V    S    +A  L++ GA+ N     G  
Sbjct: 13  GDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS--TAIALELLKQGASPNVQDTSGT- 69

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            +P+H AA+ G   T+++L+  GA+  V +      + +A  +GH  VV  + + 
Sbjct: 70  -SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 92.1 bits (230), Expect = 4e-22
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G       L  QGAS    D  G +P+  A   +G ++  K L+E GA++N   P G G 
Sbjct: 46  GSTAIALELLKQGASPNVQDTSGTSPVHDAA-RTGFLDTLKVLVEHGADVNV--PDGTGA 102

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
            P+H A + G    V  L +  ++   R+    T L +A  +G  ++V  ++ H+
Sbjct: 103 LPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 1e-12
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
               L  A     +  V + L     + +A      G T L              LL  G
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMMFGSTA-IALELLKQG 58

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           A+  V++    + +  A   G ++ ++ +  H
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 85  RGGTPLHHAAKRG-LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           R G  L  AA RG ++   RLL     +    N    TAL V  + G   +   +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQ 57

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  100 bits (251), Expect = 6e-23
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V     L   G  ++   + G TPL VA    G I + K L++  A++NA      G 
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVAS-HYGNIKLVKFLLQHQADVNA--KTKLGY 345

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +PLH AA++G    V LLL  GA+    + D  T L +A+  G+I+V  
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.1 bits (248), Expect = 1e-22
 Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ + AL  + AS   M K+G TPL VA    G + VA+ L+E  A+ NA   G  G 
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAK-YGKVRVAELLLERDAHPNA--AGKNGL 180

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH A        V+LLL  G +      + +T L +A  +  + V R
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.7 bits (247), Expect = 2e-22
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
           S G S     + G TPL VA    G + + K L++ GA+ N      +  TPLH AA+ G
Sbjct: 2   SPGISGGGGGESGLTPLHVASF-MGHLPIVKNLLQRGASPNV--SNVKVETPLHMAARAG 58

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                + LL   A    +  D  T L  A   GH N+V+ +  +
Sbjct: 59  HTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.3 bits (246), Expect = 2e-22
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  ++ L  +GAS    + + +TPL +A   +G   VAK L++  A +NA        
Sbjct: 25  GHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGHTEVAKYLLQNKAKVNAK--AKDDQ 81

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH AA+ G    V+LLL   AN  +     HT L +A  +GH+  V 
Sbjct: 82  TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.9 bits (245), Expect = 4e-22
 Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
             AG  +  + L    A +    K+ +TPL  A    G  N+ K L+E  AN N      
Sbjct: 55  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLLLENNANPNL--ATT 111

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            G TPLH AA+ G   TV  LL   A+         T L VA   G + V  
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.6 bits (244), Expect = 5e-22
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            ++D ++ L  +G S       G TPL +A      + VA++L++ G + NA     +G 
Sbjct: 190 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSANA--ESVQGV 246

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA+ G    V LLLS  AN  + N    T L +   +GH+ V   +  H
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.2 bits (243), Expect = 7e-22
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L    A+       G TPL +A    G +     L+E  A+       G   
Sbjct: 91  GHTNMVKLLLENNANPNLATTAGHTPLHIAAR-EGHVETVLALLEKEASQACMTKKGF-- 147

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH AAK G      LLL   A+      +  T L VA    ++++V+
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V+  R+L   G S      +G TPL +A    G   +   L+   AN N       G 
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQ-EGHAEMVALLLSKQANGNL--GNKSGL 279

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH  A+ G  P   +L+  G          +T L VA   G+I +V+
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.1 bits (235), Expect = 6e-21
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + +  L S+ A+    +K G TPL +     G + VA  LI+ G  ++A      G 
Sbjct: 256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDA--TTRMGY 312

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH A+  G    V+ LL   A+   +    ++ L  A  +GH ++V  +  +
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.9 bits (180), Expect = 5e-14
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G++  ++ L    A +    K G +PL  A    G  ++   L++ GA+ N       G 
Sbjct: 322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAA-QQGHTDIVTLLLKNGASPNE--VSSDGT 378

Query: 88  TPLHHAAKRGLEPTVRLL---LSCGANALVRNDDCHTALGVAR 127
           TPL  A + G      +L       +  LV +    +      
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 421

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.4 bits (236), Expect = 8e-23
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G    +  L  +GA +  M++   TPL +A    G  ++ + L++  A+INA      G 
Sbjct: 50  GRSAVVEMLIMRGARINVMNRGDDTPLHLAAS-HGHRDIVQKLLQYKADINA--VNEHGN 106

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            PLH+A   G +     L++ GA   + N      +  A+      +    E  
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
             E    +   C   G     +  ++   N +N     G   +PLH A + G    V +L
Sbjct: 2   SPEFMDDIFTQCR-EGNAVAVRLWLDNTENDLNQGDDHGF--SPLHWACREGRSAVVEML 58

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +  GA   V N    T L +A   GH ++V+
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQ 89

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 74.0 bits (183), Expect = 1e-15
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 9/104 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D ++ L    A +  +++ G  PL  AC   G   VA+ L+  GA ++       G 
Sbjct: 83  GHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQDQVAEDLVANGALVSI--CNKYGE 139

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
            P+  A     E         G N    N            KG 
Sbjct: 140 MPVDKAKAPLRELLRERAEKMGQNL---N---RIPYKDTFWKGT 177

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.8 bits (242), Expect = 1e-22
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  ++ L   GA +  +  +  TPL  AC+ SG  +    L++ GA++          
Sbjct: 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACV-SGSWDCVNLLLQHGASVQP---ESDLA 158

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +P+H AA+RG    V  L++ G N   +     T L +A        V+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.4 bits (241), Expect = 2e-22
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ + +L + G +++       TPL +AC  +      K L+E GA++N  +      
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACE-NQQRACVKKLLESGADVNQGK---GQD 223

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           +PLH   +   E    LL+  GA+   +N +    + +   +  +  +
Sbjct: 224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.6 bits (231), Expect = 3e-21
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G   ++R L SQG ++  +  +  +PL  AC+  G ++  K L++ GA +N         
Sbjct: 70  GHQLSLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQVNG--VTADWH 126

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL +A   G    V LLL  GA+    +D   + +  A  +GH+  V ++ ++
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAY 179

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 85.6 bits (213), Expect = 8e-19
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +  L   GAS++  + +  +P+  A    G +    +LI  G NI+        G
Sbjct: 136 GSWDCVNLLLQHGASVQ-PESDLASPIHEAAR-RGHVECVNSLIAYGGNIDH--KISHLG 191

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESH 141
           TPL+ A +      V+ LL  GA+  V +     + L          +   +   
Sbjct: 192 TPLYLACENQQRACVKKLLESGAD--VNQGKGQDSPLHAVVRTASEELACLLMDF 244

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
                +P+  A +  G     + LI  G  +N         +PLH A   G    V++LL
Sbjct: 56  AVSDWSPMHEAAI-HGHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGGHLSCVKILL 112

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
             GA       D HT L  A + G  + V 
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVN 142

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-----GKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
                   L  +G+ +  MD +     G  P                L+      +A   
Sbjct: 6   HHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF------PGIRLLSNPLMGDAVS- 58

Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                +P+H AA  G + ++R L+S G    +   D  + L  A + GH++ V+ +  H
Sbjct: 59  ---DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.1 bits (165), Expect = 2e-12
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                ++ L   GA +    K   +PL      +    +A  L++ GA+  A      G 
Sbjct: 201 QQRACVKKLLESGADVN-QGKGQDSPLHAVVR-TASEELACLLMDFGADTQA--KNAEGK 256

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
            P+              L   GA+
Sbjct: 257 RPVELVPPESPL-AQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
              +    L   GA  +  + EGK P+ +   +S L      L   GA++   +P
Sbjct: 233 ASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLEREGASLPKPKP 285

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 96.5 bits (241), Expect = 2e-22
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 2/114 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            + +           LE  + +G TPL VA +      + + L + GA++N       G 
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVI-HKDAEMVRLLRDAGADLNK-PEPTCGR 193

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH A +      + LLL  GA+   R     T LG A ++ +  + R + +H
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.0 bits (232), Expect = 2e-21
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
            D + +R LR  GA L   +   G+TPL +A   +   +V + L++ GA+  A   GGR 
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPTARMYGGR- 226

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
            TPL  A  R      RLL + GA       D  +    +      +  
Sbjct: 227 -TPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.5 bits (210), Expect = 2e-18
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 43  LEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN---INAYRPGGRGGTPLHHAAKRGLE 99
             ++ ++G T L +A +          L+   A    ++       G T LH AA  G  
Sbjct: 2   FGYVTEDGDTALHLAVI-HQHEPFLDFLLGFSAGHEYLDL--QNDLGQTALHLAAILGEA 58

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TV  L + GA  LV     HTAL +A           +   
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 13/124 (10%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN------ 78
            I G+   +  L + GA +   ++ G T L +AC        A  L++   +        
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAERGGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDT 111

Query: 79  -----AYRPGGRGGTPLHHAAKRGLEP-TVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
                          P    ++   E                 N D HT L VA I    
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171

Query: 133 NVVR 136
            +VR
Sbjct: 172 EMVR 175

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 3/80 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                +  L   GA        G+TPL  A +      +A+ L   GA       GG   
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALL-RPNPILARLLRAHGAPEPE--DGGDKL 259

Query: 88  TPLHHAAKRGLEPTVRLLLS 107
           +P   +              
Sbjct: 260 SPCSSSGSDSDSDNRDEGDE 279

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 94.6 bits (236), Expect = 2e-22
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRG 86
           G++  +R        +  +DK G T L  AC   G  ++ + L  +    +N       G
Sbjct: 84  GNLSWLRECLDNRVGVNGLDKAGSTALYWAC-HGGHKDIVEMLFTQPNIELNQ--QNKLG 140

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            T LH AA +G    V+LLL+ GA   +RN +   A  +A      ++++  +  
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 28  GDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G  D +  L +Q    L   +K G T L  A    G  ++ + L+  GA  +        
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW-KGYADIVQLLLAKGARTDL--RNIEK 173

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
                 A        ++      A   + N + +     + ++ H
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 72.7 bits (179), Expect = 7e-15
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 8/108 (7%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +      L  +   + ++     T               +T +     +          
Sbjct: 23  FEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK------GRTGLIPSNYVAE--QAESID 74

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
            PLH AAKRG    +R  L         +    TAL  A   GH ++V
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 8/90 (8%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
            K G+  +  A            L     +I          T       +G     R  L
Sbjct: 9   VKPGQVKVFRALYT-FEPRTPDELYIEEGDIIY--ITDMSDTNWWKGTSKG-----RTGL 60

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
                   + +     L  A  +G+++ +R
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLR 90

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 8/64 (12%), Positives = 14/64 (21%)

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144
            G   +  A       T   L     + +   D   T       KG   ++ +       
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 145 FCGW 148
               
Sbjct: 71  ESID 74

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 94.8 bits (237), Expect = 2e-22
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             VD ++ L S+G+ +   D E    L  A   SG +++A+ L+    +++A      G 
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAF-SGCVDIAEILLAAKCDLHA--VNIHGD 178

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +PLH AA+      V L LS  ++  ++N +  T L  A +   +     +   
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.9 bits (219), Expect = 6e-20
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
             ++A++ L   GA ++  D EG T L +A    G   V + L+  G  ++N    GG  
Sbjct: 55  NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGW- 112

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TP+  A +      V+LLLS G++  +R+++ +  L  A   G +++   + + 
Sbjct: 113 -TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 86.7 bits (216), Expect = 2e-19
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD    L   GA+++   ++ +TPL+ A   +  +   K LI+ GA ++       G 
Sbjct: 22  GHVDICHMLVQAGANIDTCSEDQRTPLMEAAE-NNHLEAVKYLIKAGALVDP--KDAEGS 78

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH AAK+G    V+ LLS G    N   ++D   T +  A    H+++V+ + S 
Sbjct: 79  TCLHLAAKKGHYEVVQYLLSNGQMDVNC--QDDGGWTPMIWATEYKHVDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.1 bits (204), Expect = 6e-18
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
            +  ++PL  A   +G +++   L++ GANI+         TPL  AA+      V+ L+
Sbjct: 8   HQNKRSPLHAAAE-AGHVDICHMLVQAGANIDT--CSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA    ++ +  T L +A  KGH  VV+ + S+
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.4 bits (179), Expect = 1e-14
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD    L +    L  ++  G +PL +A       +     +   +++        G 
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR-ENRYDCVVLFLSRDSDVTL--KNKEGE 211

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANA 112
           TPL  A+      +   +     ++
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.0 bits (139), Expect = 2e-09
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 75  ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
            N        R  +PLH AA+ G      +L+  GAN    ++D  T L  A    H+  
Sbjct: 2   MNFKMEHQNKR--SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA 59

Query: 135 VRAIESH 141
           V+ +   
Sbjct: 60  VKYLIKA 66

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            D  A+  L  +   ++ +D+ G+T L+      G     + L E GA+++  R    G 
Sbjct: 56  ADEQALSQL-LEDRDVDAVDENGRTALLFVAG-LGSDKCVRLLAEAGADLDH-RDMRGGL 112

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH AA       V  L+  GA+  V ++   TAL +AR              
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G    +R L   GA L+  D   G T L +A        V + L+ELGA+I       RG
Sbjct: 88  GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG-YVRPEVVEALVELGADIEV--EDERG 144

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            T L  A +          +  G        +    +   ++  +  V   +E  
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRI---GLEKVINVLEGQVFEYAEVDEIVEKR 196

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+V+ I   R+          EG    ++   D G          + A++ +        
Sbjct: 1   GEVNKIIGSRT--------AGEGAMEYLIEWKD-GHSPSWVPSSYIAADVVS-----EYE 46

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TP   AA++  E  +  LL    +    +++  TAL      G    VR +   
Sbjct: 47  TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 23/125 (18%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
              + + AL   GA +E  D+ G T L +A  +          ++ G  I          
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAR-EILKTTPKGNPMQFGRRIGLEKVINVLE 180

Query: 80  -----YRPG-------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
                Y          G+G    +    +       +     A  + ++ +    L  A 
Sbjct: 181 GQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAV 238

Query: 128 IKGHI 132
            +  I
Sbjct: 239 AESVI 243

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.1 bits (235), Expect = 1e-21
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN   P   G 
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQ--PDNEGW 107

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
            PLH AA  G       L+S GA+    N +  T L +A  +    ++
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.0 bits (214), Expect = 7e-19
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 31  DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90
           DA + L S   +     K G T L VA    G   V K LI+   ++N     G   TPL
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAA-KGYTEVLKLLIQARYDVNIKDYDGW--TPL 236

Query: 91  HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA--RIKGHINVVRA 137
           H AA  G E   R+L+    +    N    TA  VA   I G++  ++ 
Sbjct: 237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 9/121 (7%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+Q  I  +VD ++ L   GA++   D EG  PL  A    G +++A+ LI  GA++ A 
Sbjct: 77  LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS-CGYLDIAEYLISQGAHVGA- 134

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G TPL  A +  +E  ++  ++          D   A          +  + + S
Sbjct: 135 -VNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRDARQWLNS 187

Query: 141 H 141
            
Sbjct: 188 G 188

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.5 bits (192), Expect = 6e-16
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 31  DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90
             +     +    +    +G   L  AC  SG       L+E GA+IN     G   T L
Sbjct: 22  TDLEPPVVKRKKTKVKFDDGAVFLA-ACS-SGDTEEVLRLLERGADINYANVDGL--TAL 77

Query: 91  HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           H A        V+ L+  GAN    +++    L  A   G++++  
Sbjct: 78  HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 28/140 (20%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMD--------------------------S 61
           G +D    L SQGA +  ++ EG TPL +A  +                           
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176

Query: 62  GLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
            L +  + L     N   +   G   T LH AA +G    ++LL+    +  +++ D  T
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGG--TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234

Query: 122 ALGVARIKGHINVVRAIESH 141
            L  A   G     R +  +
Sbjct: 235 PLHAAAHWGKEEACRILVEN 254

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           D + K    +     G     +  +               G     A   G    V  LL
Sbjct: 5   DAKQKRNEQLKRW-IGSETDLEPPVVKRKKTKV---KFDDGAVFLAACSSGDTEEVLRLL 60

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+    N D  TAL  A I  ++++V+ +  +
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L      +   D +G TPL  A    G     + L+E   ++ A    G+  
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH-WGKEEACRILVENLCDMEAVNKVGQ-- 266

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
           T    A +  L     L       
Sbjct: 267 TAFDVADEDILGYLEELQKKQNLL 290

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
                 +++           D  G +    A      + +  TL+  GA  N        
Sbjct: 9   TWKSKQLKSF-LSSKDTFKADVHGHSASYYAIA-DNNVRLVCTLLNAGALKNLLE----N 62

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
             PLH AA       V++LL  G +    +D  +TAL  A   G++  V+
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 88.7 bits (221), Expect = 7e-20
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +V  +  L + GA       E + PL  A        + K L+  G + +      +G 
Sbjct: 42  NNVRLVCTLLNAGALKN--LLENEFPLHQAAT-LEDTKIVKILLFSGLDDSQ--FDDKGN 96

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVR-NDDCHTALGVARIKGHINVVRAIESH 141
           T L++A   G   TV+L +      +        T+   A +   +++V    S 
Sbjct: 97  TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 80.7 bits (200), Expect = 4e-17
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEG-KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G++  ++    +   L +  K G KT    A M    +++    +    +          
Sbjct: 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM-LNDVSIVSYFLSEIPSTFD---LAIL 161

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT-ALGVARIKGHINVVR 136
            + +H   K G    + LLL    +    N       + +A     I +++
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.3 bits (194), Expect = 2e-16
 Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 12/115 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            DV  +    S+  S         + + +    +G +++   L++   + N         
Sbjct: 140 NDVSIVSYFLSEIPSTF-DLAILLSCIHITIK-NGHVDMMILLLDYMTSTNT--NNSLLF 195

Query: 88  TP-LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            P +  A        ++ L     N        ++A     +     + + I   
Sbjct: 196 IPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMIIEK 243

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 13/107 (12%), Positives = 27/107 (25%), Gaps = 9/107 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD +  L     S    +     P I   +D+  I + + L +   NI          
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------- 222

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
           +              ++++         +      +        I  
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIIS 269

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.7 bits (229), Expect = 3e-21
 Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
              + ++ L  +GA ++ +D K G++PLI A  ++  +++ + L++ GAN+NA      G
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGANVNA--QMYSG 183

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            + LH A+ RGL P VR L+  GA++ ++N    T L VAR +  I+++R   + 
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 87.9 bits (219), Expect = 7e-20
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           +   +  G  L+  +   +TPL +A + + L +V + L+  GA+  A    G+  T  H 
Sbjct: 29  VNLFQQGGRELDIYNNLRQTPLHLAVI-TTLPSVVRLLVTAGASPMALDRHGQ--TAAHL 85

Query: 93  AAKRGLEPTVRLLLSCGANALV----RNDDCHTALGVARIKGHINVVR 136
           A +      +R LL   A   +    RN D  TAL VA        V+
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.8 bits (211), Expect = 8e-19
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIEL----GANINAYRPGGRGGTPLHHAAKRGLEPTV 102
           D++G TPL +A +  G +     L+ L    G  ++ Y       TPLH A    L   V
Sbjct: 6   DEDGDTPLHIAVV-QGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVV 62

Query: 103 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           RLL++ GA+ +  +    TA  +A        +RA+   
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 101

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.1 bits (204), Expect = 7e-18
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYRPG 83
                +R L + GAS   +D+ G+T   +AC +       + L++  A    ++ A    
Sbjct: 57  TLPSVVRLLVTAGASPMALDRHGQTAAHLAC-EHRSPTCLRALLDSAAPGTLDLEARNYD 115

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESH 141
           G   T LH A     + TV+LLL  GA+    +     + L  A     +++V+ +  H
Sbjct: 116 GL--TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.0 bits (201), Expect = 1e-17
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             +  ++ L   GA++      G + L  A    GL+ + +TL+  GA+ +         
Sbjct: 161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASG-RGLLPLVRTLVRSGADSSL--KNCHND 217

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
           TPL  A  R +   +R   +  A+
Sbjct: 218 TPLMVARSRRVIDILRGKATRPAS 241

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.7 bits (224), Expect = 3e-21
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ +  L   GA +  +D  G TPL +A    G + + + L++ GA++NA    G   
Sbjct: 58  GHLEIVEVLLKNGADVNAVDHAGMTPLRLAA-LFGHLEIVEVLLKNGADVNANDMEGH-- 114

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++  
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.3 bits (223), Expect = 4e-21
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA      G 
Sbjct: 25  GRDDEVRILMANGADVNAEDASGWTPLHLAAF-NGHLEIVEVLLKNGADVNA--VDHAGM 81

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL  AA  G    V +LL  GA+    + + HT L +A + GH+ +V  +  +
Sbjct: 82  TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 74.7 bits (185), Expect = 6e-16
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             +    L+ A   +G  +  + L+  GA++NA      G TPLH AA  G    V +LL
Sbjct: 11  GSDLGKKLLEAAR-AGRDDEVRILMANGADVNA--EDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+    +    T L +A + GH+ +V  +  +
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 59.3 bits (145), Expect = 1e-10
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           G++ + +  G   G  L  AA+ G +  VR+L++ GA+    +    T L +A   GH+ 
Sbjct: 3   GSHHHHHH-GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 134 VVRAIESH 141
           +V  +  +
Sbjct: 62  IVEVLLKN 69

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.8 bits (224), Expect = 6e-21
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                   L+     ++ +D EG TPL +A   +  I +AK LI+ GA+IN         
Sbjct: 17  DTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDIEIAKALIDRGADINL--QNSISD 73

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVR 136
           +P  +A  +G    +  +L      L   N     AL  A  KGHI+ V+
Sbjct: 74  SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.5 bits (205), Expect = 2e-18
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 28  GDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGR 85
           G  + +  +       L   ++ G   LI A    G I+  K L+E G  +I+       
Sbjct: 83  GRTEILAYMLKHATPDLNKHNRYGGNALIPAAE-KGHIDNVKLLLEDGREDIDF--QNDF 139

Query: 86  GGTPLHHAA-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           G T L  A       +  +  V+LL+  GA+  ++++   TA+  A  KG+  + + +  
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

Query: 141 H 141
           +
Sbjct: 200 Y 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.7 bits (203), Expect = 4e-18
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             E    L  A        V + L +    ++       G TPL+ A         + L+
Sbjct: 3   TYEVGALLEAANQR-DTKKVKEILQDTTYQVDE--VDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+  ++N    +    A  +G   ++  +  H
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 90.7 bits (226), Expect = 6e-21
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 28  GDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDSGLINVAKTLIELGANINAYR 81
           G + ++  L     +          +  G T L +A +  G + + + L+ LGA++NA +
Sbjct: 89  GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI-HGYLGIVELLVSLGADVNA-Q 146

Query: 82  PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
               G T LH A        V LLL CGA+        ++   +   +    + + +   
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.6 bits (218), Expect = 8e-20
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           ++ IR ++   A L + +   +TPL +A + +    +A+ L+  G +        RG TP
Sbjct: 25  MEVIRQVKGDLAFLNFQNNLQQTPLHLAVI-TNQPEIAEALLGAGCDPEL--RDFRGNTP 81

Query: 90  LHHAAKRGLEPTVRLLLSCGANALV------RNDDCHTALGVARIKGHINVVR 136
           LH A ++G   +V +L        +       N + HT L +A I G++ +V 
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.8 bits (203), Expect = 7e-18
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 4/112 (3%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83
            I G +  +  L S GA +   +   G+T L +A  D    ++   L++ GA++N     
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV-DLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           G   +P      R      + L       L    +                 
Sbjct: 184 GY--SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 47  DKEGKTPLIVACM---DSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVR 103
            ++G + L +A +    +  + V + +    A +N      +  TPLH A          
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ--TPLHLAVITNQPEIAE 62

Query: 104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            LL  G +  +R+   +T L +A  +G +  V  +   
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.3 bits (199), Expect = 3e-17
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR--- 81
           VI    +   AL   G   E  D  G TPL +AC   G +     L +     + +    
Sbjct: 53  VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILK 111

Query: 82  -PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR-NDDCHTALGVARIKGHINVVRAIE 139
                G T LH A+  G    V LL+S GA+   +   +  TAL +A    + ++V  + 
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171

Query: 140 SH 141
             
Sbjct: 172 KC 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 89.1 bits (222), Expect = 7e-21
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            D  A+  L  +   ++ +D+ G+T L+      G     + L E GA+++  R    G 
Sbjct: 55  ADEQALSQL-LEDRDVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDH-RDMRGGL 111

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH AA       V  L+  GA+  V ++   TAL +AR              
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 75.6 bits (187), Expect = 3e-16
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 39  QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL 98
                     EG    ++   D G          + A++ +        TP   AA++  
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKD-GHSPSWVPSSYIAADVVS-----EYETPWWTAARKAD 56

Query: 99  EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           E  +  LL    +    +++  TAL      G    VR +   
Sbjct: 57  EQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 98

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.0 bits (175), Expect = 1e-14
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G    +R L   GA L+  D + G T L +A        V + L+ELGA+I      G  
Sbjct: 87  GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG-YVRPEVVEALVELGADIEVEDERGL- 144

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGAN 111
            T L  A +          +  G  
Sbjct: 145 -TALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 4/65 (6%)

Query: 72  ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
           E+   I + R  G G        K G  P+        A+      +  T    A  K  
Sbjct: 1   EVNKIIGS-RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKAD 56

Query: 132 INVVR 136
              + 
Sbjct: 57  EQALS 61

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 89.4 bits (223), Expect = 7e-21
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
           S+G+++   D  GKTPL+ + +  G   ++  L+E GAN+N     G   TPL  A+K G
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVNDRNLEGE--TPLIVASKYG 145

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
               V+ LL  GA+   R+    TA   ARI G   V++     
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 87.1 bits (217), Expect = 5e-20
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  +AI  L      LE  D EG T LI A   +  + +A+ L+  G+N+N     G+  
Sbjct: 46  GMENAIDKLVENFDKLEDKDIEGSTALIWAVK-NNRLGIAEKLLSKGSNVNTKDFSGK-- 102

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPL  +   G       LL  GAN   RN +  T L VA   G   +V+
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 82.1 bits (204), Expect = 3e-18
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 32  AIRALRSQGASL--EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
                 +Q       + D   +TPL+VACM  G+ N    L+E    +        G T 
Sbjct: 15  KDEKSINQNLDFLRNYRDSYNRTPLMVACM-LGMENAIDKLVENFDKLED--KDIEGSTA 71

Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           L  A K         LLS G+N   ++    T L  + I G+  + 
Sbjct: 72  LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
           G+    MDK G+    +           +  I    +           TPL  A   G+E
Sbjct: 1   GSH---MDKNGEIVEKIK---------DEKSINQNLDFLRNYRDSYNRTPLMVACMLGME 48

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             +  L+        ++ +  TAL  A     + +   + S 
Sbjct: 49  NAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 90.2 bits (225), Expect = 1e-20
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                +  L +  A +  +D  GK+ L  A      ++ A  L++ GAN +      R  
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAA-VNNVDAAVVLLKNGANKDM--QNNREE 191

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL  AA+ G   T ++LL   AN  + +        +A+ + H ++VR ++  
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
              DA + L    A     D  G+TPL  A   +    V + LI   A +++A    G  
Sbjct: 68  SRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGT- 125

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPL  AA+  +E  +  L++  A+    +D   +AL  A    +++    +  +
Sbjct: 126 -TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.5 bits (192), Expect = 3e-16
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +VDA   L   GA+ +  +   +TPL +A  + G    AK L++  AN +         
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDI--TDHMDR 224

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
            P   A +R     VRLL     +
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.8 bits (185), Expect = 3e-15
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 47  DKEGKTPLIVACM------------DSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94
             +G TPL++A              +     V    I  GA+++       G T LH AA
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAA 65

Query: 95  KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +       + LL   A+A ++++   T L  A       V +
Sbjct: 66  RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78
           G  +  + L    A+ +  D   + P  +A  +    ++ + L     + +
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQ-ERMHHDIVRLLDLEHHHHH 250

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 92.2 bits (230), Expect = 1e-20
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V  ++ L   GA +   DK G  PL  AC   G   V + L++ GA +NA        
Sbjct: 69  NRVRIVQLLLQHGADVHAKDKGGLVPLHNACS-YGHYEVTELLLKHGACVNA--MDLWQF 125

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           TPLH AA +       LLLS GA+  + N    +A+ +A        +
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 91.4 bits (228), Expect = 2e-20
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 21  LYQWVIAGDVDAIRA-LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           L +   +G+ + + A L     +    D    TPL +A      + + + L++ GA+++A
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG-YNRVRIVQLLLQHGADVHA 86

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
              GG    PLH+A   G      LLL  GA     +    T L  A  K  + V  
Sbjct: 87  KDKGGL--VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 88.7 bits (221), Expect = 2e-19
 Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
           L    A      +  K  L+ A        +   L  L  N +A    GR  TPLH AA 
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA--SDGRKSTPLHLAAG 67

Query: 96  RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                 V+LLL  GA+   ++      L  A   GH  V  
Sbjct: 68  YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.8 bits (216), Expect = 7e-19
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                   L  +GA++   +K+  TPL VA       +V + L + GA +NA      G 
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAE-RAHNDVMEVLHKHGAKMNA--LDSLGQ 281

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           T LH AA  G   T RLLLS G++  + +    TA  + 
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.5 bits (210), Expect = 4e-18
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACM--DSGLINVAKTLIELGANINAYRPGGR 85
            D+  ++   +         +  +T L  A          VA+ L+  GAN+N       
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE--KNKD 246

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             TPLH AA+R     + +L   GA     +    TAL  A + GH+   R + S+
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.7 bits (169), Expect = 9e-13
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
              D +  L   GA +  +D  G+T L  A + +G +   + L+  G++ +      +G 
Sbjct: 258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAAL-AGHLQTCRLLLSYGSDPSI--ISLQGF 314

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 130
           T      +      V+ +LS      +R  D    L  A   G
Sbjct: 315 TAAQMGNE-----AVQQILSESTP--MRTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.6 bits (161), Expect = 8e-12
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 65  NVAKTLIELGANINAYRPGGRGGTPLHHAAKRG-LEPTVRLLLSCGANALVRNDDCHTAL 123
             A  L +  A       G      L  AA+ G  E  + LL     N    +    T L
Sbjct: 5   KSALDLADPSAKAVL--TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62

Query: 124 GVARIKGHINVVRAIESH 141
            +A     + +V+ +  H
Sbjct: 63  HLAAGYNRVRIVQLLLQH 80

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.9 bits (154), Expect = 7e-11
 Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 15/112 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V+    L S GA    ++  GK+ + +A     L        +              G
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT-PELRERLTYEFK--------------G 179

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
             L  AA+      V+  L+       +     TAL  A    H    +  E
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.4 bits (218), Expect = 2e-20
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD++ + +L     ++   +  G+T L V  + +    +A+ L+  GAN +     G   
Sbjct: 16  GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN--PEIARRLLLRGANPDLKDRTGF-- 71

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             +H AA+ G   T++ LL   A+  + +++ +  L +A  +GH+ VV  +  H
Sbjct: 72  AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.4 bits (218), Expect = 2e-20
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+ +  R L  +GA+ +  D+ G   +  A    G ++  +TL+E  A++N     G   
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIEDNEGN-- 104

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 141
            PLH AAK G    V  L+   A       RN    TA  +AR+ G   VV  ++++
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGH--RNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           M +     L  A    G +    +L++   N+NA    G G T L        E   R L
Sbjct: 1   MAEPWGNELASAAA-RGDLEQLTSLLQNNVNVNA--QNGFGRTALQVMKLGNPE-IARRL 56

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           L  GAN  +++      +  A   G ++ ++ +   
Sbjct: 57  LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF 92

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.5 bits (161), Expect = 7e-13
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
           G +D ++ L    A +   D EG  PL +A  + G + V + L++  A N+       +G
Sbjct: 81  GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGH--RNHKG 137

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGA 110
            T    A   G    V L+ + GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G       L   G S +   K  +TPL +A    G  N+ + L++ GA++NA        
Sbjct: 45  GHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKM-- 101

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           T LH A +   +  V LL+  GA+   ++  C TA  ++   G+ ++  
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 83.6 bits (208), Expect = 3e-19
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L + GA     D  G +PL +A    G  +  + L+  G + +A     R  
Sbjct: 13  GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQ-YGHFSTTEVLLRAGVSRDARTKVDR-- 68

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA  G    V +LL  GA+   ++    TAL  A    H  VV  +  +
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.5 bits (187), Expect = 2e-16
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
           +    L+ A   +G  +  + L+  GA          G +PLH AA+ G   T  +LL  
Sbjct: 1   DLGKKLLEAAR-AGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 109 GANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G +   R     T L +A  +GH N+V  +  H
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 62.8 bits (154), Expect = 5e-12
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + +  L   GA +   D    T L  A        V + LI+ GA+++      +  
Sbjct: 78  GHANIVEVLLKHGADVNAKDMLKMTALHWATE-HNHQEVVELLIKYGADVHTQSKFCK-- 134

Query: 88  TPLHHAAKRGLEPTVRLL 105
           T    +   G E    +L
Sbjct: 135 TAFDISIDNGNEDLAEIL 152

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L + GA +   D+ G TPL +A    G + + + L++ GA++NA    G   
Sbjct: 25  GQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADVNAVDAIGF-- 81

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA  G      +LL  GA+   ++    TA  ++   G+ ++   ++  
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 56.6 bits (138), Expect = 5e-10
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           +      G+++            L  AA+ G +  VR+L++ GA+   +++   T L +A
Sbjct: 4   SHHHHHHGSDLG---------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA 54

Query: 127 RIKGHINVVRAIESH 141
              GH+ +V  +  +
Sbjct: 55  TAHGHLEIVEVLLKN 69

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 84.9 bits (211), Expect = 3e-20
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                   L  +G+ +     +    L+ A    G  +  + L+  GA++ A    G   
Sbjct: 5   HHHHHSSGLVPRGSHM---GSDLGKKLLEAARA-GQDDEVRILMANGADVAAKDKNGS-- 58

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
           TPLH AA+ G    V+LLL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.0 bits (180), Expect = 5e-16
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
            +  L+  G+++ +       G  L  AA+ G +  VR+L++ GA+   ++ +  T L +
Sbjct: 9   HSSGLVPRGSHMGS-----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHL 63

Query: 126 ARIKGHINVVRAIESH 141
           A   GH+ VV+ +   
Sbjct: 64  AARNGHLEVVKLLLEA 79

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 93  AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            +          L+  G++      D    L  A   G  + VR + ++
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMAN 46

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 88.4 bits (220), Expect = 4e-20
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 2/111 (1%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPG 83
           V AG  + ++ L   G ++   D +G TPL  A      + V K L+E GA + A     
Sbjct: 78  VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS-CNNVQVCKFLVESGAAVFAMTYSD 136

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
            +         + G     + L        + N     AL     +    +
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.7 bits (213), Expect = 4e-19
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+ D ++ +  +       + EG T L  A    G   + K L++ G N+NA    G   
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAADSDGW-- 104

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA--NALVRND-DCHTALGVARIKGHINVVRAIESH 141
           TPLH AA        + L+  GA   A+  +D            +G+    + +   
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           +  G+  L      + L       I  G  +            L  ++  G    V+ ++
Sbjct: 2   EITGQVSLPPGKR-TNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRII 57

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
               +  + ND+  TAL  A   GH  +V+
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVK 87

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L                + G  +++ +      L+ + +  G  ++ + +I    + +  
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSL-EGEFDLVQRIIYEVDDPSL- 65

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
            P   G T LH+A   G    V+ L+  G N    + D  T L  A    ++ V + +  
Sbjct: 66  -PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 141 H 141
            
Sbjct: 125 S 125

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 87.9 bits (219), Expect = 5e-20
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                +  L +  A +  +D  GK+ L  A      ++ A  L++ GAN +      R  
Sbjct: 103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAA-VNNVDAAVVLLKNGANKDM--QNNREE 159

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL  AA+ G   T ++LL   AN  + +        +A+ + H ++VR ++ +
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 84.4 bits (210), Expect = 7e-19
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 27  AGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
                 I     QGASL    D+ G+T L +A       + AK L+E  A+ N       
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAAR-YSRSDAAKRLLEASADANI--QDNM 57

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G TPLH A     +   ++L+   A   +A  R  D  T L +A       ++  + + 
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINS 114

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 82.8 bits (206), Expect = 3e-18
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
              DA + L    A     D  G+TPL  A   +    V + LI   A +++A    G  
Sbjct: 36  SRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGT- 93

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPL  AA+  +E  +  L++  A+    +D   +AL  A    +++    +  +
Sbjct: 94  -TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.1 bits (186), Expect = 1e-15
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +VDA   L   GA+ +  +   +TPL +A  + G    AK L++  AN +         
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDI--TDHMDR 192

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
            P   A +R     VRLL        VR+   H
Sbjct: 193 LPRDIAQERMHHDIVRLLDEYNL---VRSPQLH 222

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 85.5 bits (213), Expect = 7e-20
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         
Sbjct: 53  NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNV--ADLWKF 109

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA +G     +LLL  GA+   +N D +T L + +  G  ++   +   
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 76.7 bits (190), Expect = 1e-16
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           GDV+ ++ L + Q  +   ++    TPL  A      ++V + L++ GA+++A   GG  
Sbjct: 19  GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAG-YNRVSVVEYLLQHGADVHAKDKGGL- 76

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             PLH+A   G      LL+  GA   V +    T L  A  KG   + + +  H
Sbjct: 77  -VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.7 bits (185), Expect = 4e-16
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           + E    L+ A   +G +   K L  +   N       GR  TPLH AA       V  L
Sbjct: 5   NSEADRQLLEAAK-AGDVETVKKLCTVQSVNCRD--IEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVV 135
           L  GA+   ++      L  A   GH  V 
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYGHYEVA 91

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 64.3 bits (158), Expect = 2e-12
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
             GA +   D    TPL  A    G   + K L++ GA+         G TPL       
Sbjct: 96  KHGAVVNVADLWKFTPLHEAAA-KGKYEICKLLLQHGADPTK--KNRDGNTPLDLVKDGD 152

Query: 98  LEPTVRLLLSCGA 110
            +    LL    A
Sbjct: 153 TD-IQDLLRGDAA 164

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 86.3 bits (214), Expect = 8e-20
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD-----SGLINVAKTLIELGANINAY 80
                     L ++GA ++   KEG T             +G   + K  +E GA+I A 
Sbjct: 51  DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA- 109

Query: 81  RPGGRGGTPLHHAAKRG------LEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHIN 133
                    +             + P  +L+    G   L+++    TAL   +      
Sbjct: 110 -LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

Query: 134 VVRAIESH 141
            ++ +E +
Sbjct: 169 ALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-----DSGLINVAKTLI-ELGANINA 79
           I G  +  +    +GA +  + K  K  +          ++ +I + K +  + G  +  
Sbjct: 90  ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
               G   T L    +      ++++        ++ + 
Sbjct: 150 KDKWGL--TALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 13/97 (13%), Positives = 23/97 (23%), Gaps = 10/97 (10%)

Query: 48  KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA-----KRGLEPTV 102
                 +  A M  G       L E G             + + +               
Sbjct: 4   MSEYRTVSAAAM-LGTYEDFLELFEKGYEDKESV----LKSNILYDVLRNNNDEARYKIS 58

Query: 103 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
             L++ GA+   R  +  T        G  ++    E
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE 95

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-----GANINAYRPGG 84
           ++ I+ L   GAS    DK  +TPL+ A  +         +++         ++      
Sbjct: 153 LEMIKILVQLGASPTAKDKADETPLMRAM-EFRNREALDLMMDTVPSKSSLRLDY--ANK 209

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +G + LH A     E      +  G +  + +++    L ++     + + + +   
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 87.2 bits (217), Expect = 8e-19
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 11/110 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L   G S    ++ G T L +AC   G ++ AK L  +G   + +     G 
Sbjct: 31  GQTDEVRRLIETGVSPTIQNRFGCTALHLACK-FGCVDTAKYLASVGEVHSLWH----GQ 85

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 137
            P+H A        V  L+                  +        V   
Sbjct: 86  KPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEI 129

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.9 bits (211), Expect = 4e-18
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           D E    + VA    G  +  + LIE G +         G T LH A K G   T + L 
Sbjct: 17  DDENMEKIHVAAR-KGQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVDTAKYLA 73

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           S G             + +A +    ++V A+   
Sbjct: 74  SVGEV--HSLWHGQKPIHLAVMANKTDLVVALVEG 106

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.0 bits (206), Expect = 2e-17
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 12/125 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
              D        G  +   D E   PL ++   + ++ + K L++              G
Sbjct: 222 NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV-RAAMVLLTKELLQKTDVFLIQACPYHNG 280

Query: 88  -----------TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                        +  AA    +  ++LL       +   +         + K    V R
Sbjct: 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKR 340

Query: 137 AIESH 141
              + 
Sbjct: 341 MKLAP 345

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 8/101 (7%)

Query: 47  DKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
             +G+T L          + + K L++LGA+  A        TPL  A +      + L+
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA--KDKADETPLMRAMEFRNREALDLM 192

Query: 106 LSC-----GANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +              N   ++ L  A +    +V       
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 2e-14
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 3/99 (3%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
                      G ++          +  A  D     V + L E    +        G  
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAA-DPSKQEVLQLLQEKLDEVVR--SLNTGAG 325

Query: 89  PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
                 K+      R+ L+  A    R+     +  V++
Sbjct: 326 GAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 70  LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129
                 N             +H AA++G    VR L+  G +  ++N    TAL +A   
Sbjct: 6   TDFPKLNRIK--SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 130 GHINVVR 136
           G ++  +
Sbjct: 64  GCVDTAK 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.5 bits (218), Expect = 2e-19
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83
           V   DVD ++ L   GA++ + ++E G TPL  A       ++ + L+  GA+       
Sbjct: 13  VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSREDIVELLLRHGADPVL--RK 69

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
             G TP   AA  G    ++L LS GA+    +    TA   A + G +  ++
Sbjct: 70  KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.5 bits (218), Expect = 2e-19
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
              D +  L   GA      K G TP ++A + +G + + K  +  GA++N     G   
Sbjct: 50  SREDIVELLLRHGADPVLRKKNGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGF-- 106

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN----------ALVRNDDCHTALGVARIKGHINVVR 136
           T    AA  G    ++ L   GAN                   TAL  A  KGH+ V++
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             E    LI A   +  +++ + L+E GAN+N  +    G TPLH+A +   E  V LLL
Sbjct: 2   AVEDNHLLIKAVQ-NEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
             GA+ ++R  +  T   +A I G + +++
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.9 bits (206), Expect = 7e-18
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACM---DSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           L   GA +   D  G+  LI A +   DS +  +   L++ GA++N    G RG TPL  
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--RGERGKTPLIL 225

Query: 93  AAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           A ++     V+ LL          + D  TAL +A       +   +   
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.0 bits (201), Expect = 3e-17
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)

Query: 28  GDVDAIRALRSQGA----------SLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGAN 76
           G V A++ L  +GA            E + K G T L+ A    G + V K L+ E+GA+
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGHVEVLKILLDEMGAD 174

Query: 77  INAYRPGGRGGTPLHHAAKRG----LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
           +NA      G   L HA        +E    LLL  GA+  VR +   T L +A  K H+
Sbjct: 175 VNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232

Query: 133 NVVRA-IESH 141
            +V+  +E  
Sbjct: 233 GLVQRLLEQE 242

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 5e-14
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE-LGANINAYRPGGRGGTPLH 91
              L   GA +    + GKTPLI+A  +   + + + L+E     IN       G T L 
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAV-EKKHLGLVQRLLEQEHIEIND--TDSDGKTALL 258

Query: 92  HAAKRGLEPTVRLLLSCGAN 111
            A +  L+    LL   GA+
Sbjct: 259 LAVELKLKKIAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 8/68 (11%)

Query: 75  ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC-HTALGVARIKGHIN 133
           A +            L  A +      V+ LL  GAN   + ++   T L  A      +
Sbjct: 1   AAVE-------DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED 53

Query: 134 VVRAIESH 141
           +V  +  H
Sbjct: 54  IVELLLRH 61

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 28  GDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
             +  ++ L  Q    +   D +GKT L++A     L  +A+ L + GA+ + 
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDC 281

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ ++    +       ++EG T L  A       ++   LI  GAN+N+    G   
Sbjct: 32  GELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSPDSHGW-- 88

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRND-DCHTALGVARI--KGHINVVRAIESH 141
           TPLH AA          L+  GA        D  TA        +G+ +    +   
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVA-CMDSGLINVAKTLIELGANINAYRPGGR 85
            D     AL   GA++      +G T          G  + A  L ++  ++     G  
Sbjct: 98  NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV 157

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
               L   +    +  +          L R+    T    A + G    V
Sbjct: 158 --YALWDYSAEFGD-ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 79.2 bits (196), Expect = 5e-17
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 33  IRALRSQGASLEWMDKE---GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           +R++  +  S     +        L+ A + +G + V +  ++   + +   P   G T 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAAL-TGELEVVQQAVKEMNDPSQ--PNEEGITA 57

Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           LH+A        V  L++ GAN    +    T L  A       +  A+  H
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH 109

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  +   +   +  L + GA++   D  G TPL  A        +   L++ GA I A 
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS-CNDTVICMALVQHGAAIFA- 115

Query: 81  RPGGRGGTPLHHAA--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
                G T        + G       L     +  + N     AL     +    +
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL 171

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.4 bits (205), Expect = 2e-19
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
           G       K+G TPL  A   +G     K L+  GA++NA    G   TPLH AAK G  
Sbjct: 1   GHMWG--SKDGNTPLHNAA-KNGHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHA 55

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
             V+LLL+ GA+   R+ D +T   +A+  GH  +V+
Sbjct: 56  EIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVK 92

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.0 bits (204), Expect = 4e-19
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L S+GA +    K+G TPL +A  + G   + K L+  GA++NA    G   
Sbjct: 20  GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNARSKDGN-- 76

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
           TP H A K G    V+LL + GA+   R+       
Sbjct: 77  TPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L ++GA +    K+G TP  +A   +G   + K L   GA++NA   G    
Sbjct: 53  GHAEIVKLLLAKGADVNARSKDGNTPEHLAKK-NGHHEIVKLLDAKGADVNARSWGSS-- 109

Query: 88  TPLHH 92
              HH
Sbjct: 110 HHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           G    +      G TPLH+AAK G    V+ LLS GA+   R+ D +T L +A   GH  
Sbjct: 1   GHMWGSKD----GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56

Query: 134 VVRAIESH 141
           +V+ + + 
Sbjct: 57  IVKLLLAK 64

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 85.2 bits (212), Expect = 4e-19
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG-TPLHHAA 94
           L S+ + L   D++G+ PL  +        +   L+    N+N        G TP H A 
Sbjct: 22  LHSKPSLLLQKDQDGRIPLHWSVS-FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80

Query: 95  KRGLEPTVRLLLS--CGANALVRNDDCHTALGVARIKGHINVVR 136
             G    V+ L       +     +   T L +A  K    V +
Sbjct: 81  SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 28  GDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIE--LGANINAYRP 82
              +    L S+  ++   ++ D  G TP  +AC   G + V K+L +  L  ++N    
Sbjct: 47  QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNK--I 103

Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             +G T LH A  +      + L+  GA+  +++      L  A   G + ++  +   
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.3 bits (202), Expect = 9e-18
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 37  RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR 96
           R     L  +  +G T L +A        V++ LIE GA++       +   PLH AA  
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVG-KKWFEVSQFLIENGASVRIKDKFNQ--IPLHRAASV 150

Query: 97  GLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVRA-IESH 141
           G    + LL   G +A+  ++    T L  A  +GH +     +E +
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.0 bits (196), Expect = 6e-17
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
              PL  ACM++    V + L    + +        G  PLH +           LLS  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 110 AN---ALVRNDDCHTALGVARIKGHINVVRAIESH 141
            N       +D   T   +A   G++ VV+++   
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.3 bits (194), Expect = 1e-16
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRG 86
              +  + L   GAS+   DK  + PL  A    G + + + L  LG + +N     G  
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGW- 175

Query: 87  GTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
            TPL HA   G      LL+   GA   + ++    A  VA    +  V +   +++
Sbjct: 176 -TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNV 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.9 bits (210), Expect = 5e-19
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
           +  +     D++ +T L  AC  +G   + + L++LG  +N       G +PLH AA  G
Sbjct: 28  ADKSLATRTDQDSRTALHWACS-AGHTEIVEFLLQLGVPVND--KDDAGWSPLHIAASAG 84

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            +  V+ LL  GA+    N +  T L  A  K    +   +   
Sbjct: 85  XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 73.4 bits (180), Expect = 6e-15
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA    G   
Sbjct: 51  GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS-AGXDEIVKALLVKGAHVNAVNQNGC-- 107

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ +V  +  +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++AL  +GA +  +++ G TPL  A        +A  L+E GAN +A        
Sbjct: 84  GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDHYDA-- 140

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T +H AA +G    V +LL   A+  +++ + +T L +A  +  +   + + + 
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.4 bits (167), Expect = 3e-13
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
                 +A     L  + + ++   +         R  T LH A   G    V  LL  G
Sbjct: 7   NIMICNLAYS-GKLDELKERILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLG 63

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                ++D   + L +A   G   +V+A+   
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              + +   Q+    L+        +    L   GA+ +  D    T +  A    G + 
Sbjct: 95  KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLK 153

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           +   L+   A+ N     G   TPLH A         + L++ GA+  + N +  T L V
Sbjct: 154 MVHILLFYKASTNIQDTEGN--TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

Query: 126 ARIKGHINVVR 136
           A  KG + ++ 
Sbjct: 212 A--KGGLGLIL 220

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.3 bits (133), Expect = 8e-09
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              N   +       +++    G++  +  L    AS    D EG TPL +AC D   + 
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DEERVE 186

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
            AK L+  GA+I       +  TPL  A    L   +   L+ G  
Sbjct: 187 EAKFLVTQGASIYIENKEEK--TPLQVAKGG-LG-LILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              + + Q    +  L+       V+  + L +QGAS+   +KE KTPL VA    G + 
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA---KGGLG 217

Query: 66  VAKTLIELGANIN 78
           +    +  G   +
Sbjct: 218 LILKRLAEGEEAS 230

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 87.3 bits (216), Expect = 8e-19
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           +  +D +  L +    ++ +  E      +A  ++G ++V   L EL             
Sbjct: 105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAA-ENGHLHVLNRLCELAPTEIMAMIQAEN 163

Query: 87  GTPLHHAAKRG-LEPTVRLLLSCGAN---ALVRNDDCHTALGVARIKGHINVVRAIESH 141
                 AA+ G L   +  L         A+++ ++ +     A  +GH NV+  +   
Sbjct: 164 YHAFRLAAENGHLH-VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 15/119 (12%)

Query: 28  GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           G +  +  L     +        E       A +  G  NV   L++    +        
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY------ 227

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144
                 H  + G +     +            + H A  ++   G  ++V   E    +
Sbjct: 228 ---AEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLSNPDGVFDLVTKSECLQGF 279

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 12/102 (11%)

Query: 47  DKEGKTPLIVACM--DSGLINVAKTLIEL-----GANINAYRPGGRGGTPLHHAAKRGLE 99
             +G   L       D  L++  + L+ +      A        G     L  A + G +
Sbjct: 275 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT--IPGDANELLRLALRLGNQ 332

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
               LLLS  +   +   +      +    G +++      H
Sbjct: 333 GACALLLSIPSVLALTKAN---NYYINETGGRLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 11/89 (12%)

Query: 28  GDVDAIRALRS-----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
             +D IR L S       A    +  +    L +A    G       L+ + + +     
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR-LGNQGACALLLSIPSVLAL--- 347

Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
                   +     G      + L    +
Sbjct: 348 --TKANNYYINETGGRLDLRAVALEHHHH 374

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.1 bits (199), Expect = 9e-19
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           G+TPL +A   +G + V K L+E GA++NA    GR  TPLH AA+ G    V+LLL  G
Sbjct: 2   GRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58

Query: 110 ANALVRNDDCHTALGVARIKGHINVVR 136
           A+   ++ +  T L +A   GH+ VV+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVK 85

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 76.6 bits (190), Expect = 2e-17
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA    GR  
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA 110
           TPLH AA+ G    V+LLL  GA
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 54.3 bits (132), Expect = 1e-09
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G TPLH AA+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+ +   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 76.4 bits (188), Expect = 1e-17
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 451 KDDGSSSSCVICWEAPVEGACVP--CGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
               +   CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 3   LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 75.3 bits (185), Expect = 2e-17
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 459 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 509
           C +C + P +G  +    GH+  C  C   +K     CP+C+ +I  VI+++ 
Sbjct: 10  CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.9 bits (203), Expect = 4e-17
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 28  GDVDAIRALRSQGA--------SLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANIN 78
             V + + L  +GA          +    +G+T L  A      + + K L+ E G+N +
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ-VSNMPIVKYLVGEKGSNKD 307

Query: 79  AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
                G+  TP+  AA+ G    V  L+  GA+    +   HTA  +A+   H N+V   
Sbjct: 308 KQDEDGK--TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

Query: 139 ESH 141
           +  
Sbjct: 366 DRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.5 bits (202), Expect = 6e-17
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
            +   + GA +  MD +  TPL++A   +    +   L++ GA+   Y    R  + LH 
Sbjct: 149 AKECIAAGADVNAMDCDENTPLMLAV-LARRRRLVAYLMKAGADPTIYNKSER--SALHQ 205

Query: 93  AAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGHINVVRAIE 139
           AA       +  +L+      +    + +  TAL +       + V + +
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-------DSGLINVAKTLIELGANINA 79
           AG       +  +  ++    +  +T L            +  +++ AK  I  GA++NA
Sbjct: 103 AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                   TPL  A        V  L+  GA+  + N    +AL  A       ++ 
Sbjct: 162 --MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV 216

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 13/116 (11%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+        +        + E    L      S    + + +     NI          
Sbjct: 72  GNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS--YAITEPITRESVNIID---PRHNR 126

Query: 88  TPLHHAAKRGLEPTVRLLL--------SCGANALVRNDDCHTALGVARIKGHINVV 135
           T LH  A          L+        + GA+    + D +T L +A +     +V
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
           +  +G++ +  D++GKTP+++A    G I V   LI+ GA++ A        T    A  
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQ-EGRIEVVMYLIQQGASVEA--VDATDHTARQLAQA 355

Query: 96  RGLEPTVRLLLSCGAN 111
                 V +   C   
Sbjct: 356 NNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 11/100 (11%), Positives = 17/100 (17%), Gaps = 5/100 (5%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
                 P       +G   +               P       LH  A          + 
Sbjct: 58  QHYSLYPNPQGYG-NGNDFLGDFNHTNLQIPTE--PEPESPIKLHTEAAGSYA-ITEPIT 113

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146
               N ++      T L              +  H    C
Sbjct: 114 RESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 9/95 (9%), Positives = 17/95 (17%), Gaps = 13/95 (13%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
               +  L+ A  D            +    N  +       P       G +       
Sbjct: 34  ITSSQHSLLEASYD----------GYIKRQRNELQHYSL--YPNPQGYGNGNDFLGDFNH 81

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +          +    L      G   +   I   
Sbjct: 82  TNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRE 115

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
           G ++ +  L  QGAS+E +D    T   +A   +   N+           
Sbjct: 324 GRIEVVMYLIQQGASVEAVDATDHTARQLAQ-ANNHHNIVDIFDRCRPER 372

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.4 bits (194), Expect = 1e-16
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 17/127 (13%)

Query: 28  GDVDAIRALRSQGASLEWM-----DKEGKTPLIVACMDSGLINVAKTLIELGANINA--- 79
            +++A   L      L +        EG+T L +A + +  +N+ + L+  GA+++A   
Sbjct: 48  DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI-NQNVNLVRALLARGASVSARAT 106

Query: 80  --------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
                   +     G  PL  AA  G E  VRLL+  GA+   ++   +T L +  ++ +
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166

Query: 132 INVVRAI 138
                 +
Sbjct: 167 KTFACQM 173

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 17/122 (13%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---GGRGGTPLHH 92
           L+ +G  +      G+T L +A +    +  A  L+E    +           G T LH 
Sbjct: 23  LKFEGCEVHQRGAMGETALHIAAL-YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81

Query: 93  AAKRGLEPTVRLLLSCGANALVRNDDCH-------------TALGVARIKGHINVVRAIE 139
           A        VR LL+ GA+   R                    L  A   G   +VR + 
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 140 SH 141
            H
Sbjct: 142 EH 143

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
            ++PL++A  ++ +  ++K L   G  ++    G  G T LH AA         +L+   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQ--RGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 110 ANAL-----VRNDDCHTALGVARIKGHINVVRAIESH 141
              +         +  TAL +A I  ++N+VRA+ + 
Sbjct: 61  PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 26/140 (18%)

Query: 25  VIAGDVDAIRALRSQGA-------------SLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           VI  +V+ +RAL ++GA                 +   G+ PL  A    G   + + LI
Sbjct: 83  VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLI 141

Query: 72  ELGANINAYRPGGRGGTPLHHAAKRGLEPTVR----LLLSCGAN------ALVRNDDCHT 121
           E GA+I A      G T LH    +  +        LLLS           LV N+   T
Sbjct: 142 EHGADIRA--QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT 199

Query: 122 ALGVARIKGHINVVRAIESH 141
              +A ++G+I + + +   
Sbjct: 200 PFKLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA---- 79
           G  + +R L   GA +   D  G T L +  +       A  +  L        +     
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILIL-QPNKTFACQMYNLLLSYDGGDHLKSLE 190

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
             P  +G TP   A   G     + L+    +
Sbjct: 191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 71.7 bits (176), Expect = 6e-16
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           C++C E  +     PCGH   C SC ++++     CPVCR+++  V  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVY 66

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 26/136 (19%), Positives = 40/136 (29%), Gaps = 27/136 (19%)

Query: 28  GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKTLIELGAN 76
           G  D I  L       + +             +G+T L +A      + +   L+E GA+
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE-RRNMTLVTLLVENGAD 126

Query: 77  INA------------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHT 121
           + A                  G  PL  AA       V+ LL      A+   R+   +T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 122 ALGVARIKGHINVVRA 137
            L          V   
Sbjct: 187 VLHALVEVADNTVDNT 202

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 71.4 bits (175), Expect = 5e-14
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 26/138 (18%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMD--SGLINVAKTLIELGANINAYR 81
            +   +  ++  + +    E+ D E GKT L+ A ++  +G  +    L+++    ++ +
Sbjct: 28  ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87

Query: 82  PG---------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC------------- 119
                       +G T LH A +R     V LL+  GA+     +               
Sbjct: 88  QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF 147

Query: 120 -HTALGVARIKGHINVVR 136
               L +A     + +V+
Sbjct: 148 GELPLSLAACTNQLAIVK 165

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 21/119 (17%)

Query: 38  SQGASLEWMDKEGKTPLIVACMD------SGLINVAKTLIELGANINAYRPGGRGGTPLH 91
           S  A  +      +  +  A           L+   +   +   +    +    G T L 
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEF-KDPETGKTCLL 59

Query: 92  HA---AKRGLEPTVRLLLSCGA---------NALVRNDDC--HTALGVARIKGHINVVR 136
            A      G   T+ LLL             NA   +      TAL +A  + ++ +V 
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 28  GDVDAIRALRSQGASLEWMDKE--------------GKTPLIVACMDSGLINVAKTLIEL 73
            ++  +  L   GA ++                   G+ PL +A   +  + + K L++ 
Sbjct: 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQN 170

Query: 74  G---ANINAYRPGGRGGTPLHHAAKRG----------------LEPTVRLLLSCGANALV 114
               A+I+A      G T LH   +                  +      L        +
Sbjct: 171 SWQPADISA--RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI 228

Query: 115 RNDDCHTALGVARIKGHINVVRAI 138
            N    T L +A   G I V+  I
Sbjct: 229 TNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 18/124 (14%), Positives = 31/124 (25%), Gaps = 27/124 (21%)

Query: 28  GDVDAIRALRSQG---ASLEWMDKEGKTPLIVAC---------------MDSGLINVAKT 69
             +  ++ L       A +   D  G T L                   M + ++ +   
Sbjct: 159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218

Query: 70  LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129
           L              +G TPL  AA  G    +  +L    +              A   
Sbjct: 219 LHPTLKLEEI--TNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHH 269

Query: 130 GHIN 133
            H +
Sbjct: 270 HHHH 273

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 73.3 bits (180), Expect = 8e-15
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 31/141 (21%)

Query: 28  GDVDAIRALRSQGASLE-------------WMDKEGKTPLIVACMDSGLINVAKTLIELG 74
             +  ++ L   GA +                   G+ PL +A   +   +V   L+E  
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENP 159

Query: 75  ---ANINA--------------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND 117
              A++ A                      + L      GL      L        + N 
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219

Query: 118 DCHTALGVARIKGHINVVRAI 138
              T L +A  +G I + R I
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 23/155 (14%), Positives = 38/155 (24%), Gaps = 42/155 (27%)

Query: 28  GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKTLIELGAN 76
           G    I  L                       +G + L +A      +   K L+E GA+
Sbjct: 57  GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE-KRSLQCVKLLVENGAD 115

Query: 77  INA-----------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---------------- 109
           ++                  G  PL  AA       V  LL                   
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175

Query: 110 ---ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                 +  N   ++AL +    G + +   +   
Sbjct: 176 LHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 32/150 (21%)

Query: 19  ELLYQWVIAGDVDAIRAL----RSQGASLEW----MDKEGKTPLIVACMDS--GLINVAK 68
           + L+  V  G  + +  L    R     L          GKT L+ A ++   G+     
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 69  TLIELGANINAYRPGG---------RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119
            L+++  +    +P           +G + LH A ++     V+LL+  GA+  +R    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 120 -------------HTALGVARIKGHINVVR 136
                           L +A      +VV 
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
              +   +    + L++   D GL+ +   L              +G TPL  AAK G  
Sbjct: 178 ALVMIADNSPENSALVIHMYD-GLLQMGARLCPTVQLEEI--SNHQGLTPLKLAAKEGKI 234

Query: 100 PTVRLLLSCGAN 111
              R +L    +
Sbjct: 235 EIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +     L       E  + +G TPL +A    G I + + +++   +           
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPLKLAA-KEGKIEIFRHILQREFSGA--------- 248

Query: 88  TPLHHAA 94
              HH  
Sbjct: 249 AAHHHHH 255

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 446 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 505
           S+     + +S  CV+C    V    +PC H   C  C+   +     CP+CR  + +  
Sbjct: 5   SSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESF 60

Query: 506 RLY 508
            L 
Sbjct: 61  ALS 63

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           C IC +  +    VPCGH+  C  C   +      CP+C T I    +++
Sbjct: 28  CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIF 73

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.4 bits (172), Expect = 2e-13
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 1/138 (0%)

Query: 2   GQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS 61
                 +N ++Q+   +  L + +     +   +L +  ++                 DS
Sbjct: 48  ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 107

Query: 62  GLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
            L  V         N+N       G TPLH          V+ L+  G+N L  ++   +
Sbjct: 108 LLQEVNDAFPNTQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166

Query: 122 ALGVARIKGHINVVRAIE 139
            L  A    +       E
Sbjct: 167 CLVKAVKSVNNYDSGTFE 184

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 8e-08
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTL---IELGANINAYRPGGRGGTPLHH 92
           +  +           K             ++ + L     +   +NA      G T L+ 
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA--QDSNGDTCLNI 289

Query: 93  AAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
           AA+ G    V  LL  GA+  + N      +
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           +         L   D  G T L +A    G I++   L++ GA+         G  P+  
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNIAAR-LGNISIVDALLDYGADPFI--ANKSGLRPVDF 322

Query: 93  AA 94
            A
Sbjct: 323 GA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 17/116 (14%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSG-----------LINVAKTLIELGANINAYRPGG 84
           L      L   D   +T L    + SG           L  +   +++          G 
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS--GT 244

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALV----RNDDCHTALGVARIKGHINVVR 136
                  +      + ++   L            ++ +  T L +A   G+I++V 
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.2 bits (161), Expect = 3e-12
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 10/144 (6%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK------EGKTPLIVACM-- 59
             +H    +K   L + V   D+  +    + G  L             +T L +A    
Sbjct: 121 RKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV 180

Query: 60  DSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119
           D   +++   L++   N++     G   T LH+         ++LLL   A+  + N+  
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTGKGS--TALHYCCLTDNAECLKLLLRGKASIEIANESG 238

Query: 120 HTALGVARIKGHINVVRAIESHIC 143
            T L +A+   H +    +   + 
Sbjct: 239 ETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 2   GQSLNSMNQHQQRQSKDE-LLYQWVIAGD---VDAIRALRSQGASLEWMDKEGKTPLIVA 57
           G  L            DE  L+  V + D   +  +  L     +L+    +G T L   
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212

Query: 58  CMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           C+ +      K L+   A+I      G   TPL  A +   E    LL    +   
Sbjct: 213 CL-TDNAECLKLLLRGKASIEIANESGE--TPLDIAKRLKHEHCEELLTQALSGRF 265

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 33/156 (21%)

Query: 19  ELLYQWVIAGDVDAIRA----LRSQGASLEWMDKE----GKTPLIVACMDS--GLINVAK 68
            +L+  V  G  D +      L +    L   +      GKT L  A ++   G  +   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 69  TLIELGANINAYRPG---------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119
            L+++       R            RG T LH A +R  +  V LL+  GA+   +    
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 120 --------------HTALGVARIKGHINVVRAIESH 141
                            L +A      ++V  +  +
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.4 bits (157), Expect = 9e-12
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 41  ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------------YRPGGRGGT 88
           +    +   G+T L +A       +  + L+E GA+++A                  G  
Sbjct: 84  SPFRDVYYRGQTALHIAIE-RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142

Query: 89  PLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKGH 131
           PL  AA       V  L   G   A+   ++   +T L        
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 16/100 (16%)

Query: 28  GDVDAIRALRSQG---ASLEWMDKEGKTPLIVACM--------DSGLINVAKTLIELGAN 76
                +  L   G   A L   D  G T L                +  +   L+   A 
Sbjct: 151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210

Query: 77  INAYRPGGR-----GGTPLHHAAKRGLEPTVRLLLSCGAN 111
           +             G +PL  AAK G     + ++     
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 36/147 (24%)

Query: 28  GDVDAIRALRSQGA--------------SLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
                +  L  +GA                      G+ PL +A   +   ++   L E 
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC-TNQPHIVHYLTEN 162

Query: 74  G---ANINAYRPGGRGGTPLHHAA---------KRGLEPTVRLLLSCGAN-------ALV 114
           G   A++       RG T LH             + +     LLL   A          +
Sbjct: 163 GHKQADLRR--QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL 220

Query: 115 RNDDCHTALGVARIKGHINVVRAIESH 141
            N+D  + L +A   G I + + I   
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           + +G +PL++A   +G I + + +I       A           HH
Sbjct: 222 NNDGLSPLMMAAK-TGKIGIFQHIIRREIADAAAH------HHHHH 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 16  SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKE------GKTPLIVACM--DSGLINVA 67
            + + L+  +   D+ ++    + G                +  L +A    +   + + 
Sbjct: 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 209

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             +I+ G +++A    G   T LH+AA       ++LLL   A     N+   TAL +AR
Sbjct: 210 DFIIQNGGHLDAKAADGN--TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267

Query: 128 IKGHINVV 135
            K H    
Sbjct: 268 KKHHKECE 275

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
           G  L+    +G T L  A +     +  K L++  A +      G   T L  A K+  +
Sbjct: 216 GGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRALVGTVNEAGE--TALDIARKKHHK 272

Query: 100 PTVRLLLSCGANAL 113
               LL    A   
Sbjct: 273 ECEELLEQAQAGTF 286

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 62.3 bits (149), Expect = 9e-11
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
           C +C +  V    +PCGH+  C  C   ++     CP+CR  I   +R +
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTF 343

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 15  QSKDELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDSGLINVAK 68
             + + L+  +   D+ ++    + G                +  L +A   +   ++  
Sbjct: 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 189

Query: 69  T--LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
              +I+ G +++A    G   T LH+AA       ++LLL   A     N+   TAL +A
Sbjct: 190 VDFIIQNGGHLDAKAADGN--TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

Query: 127 RIKGHINVVRAIE 139
           R K H      +E
Sbjct: 248 RKKHHKECEELLE 260

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM--DKEGKTPLIVACMDSGL 63
                         L         +  +    + GA + W+   ++  TPLI A   + L
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248

Query: 64  INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
           +     L++ GAN+N       G  PLHHA   G      L L  GA+   R+ +    L
Sbjct: 249 LACE-FLLQNGANVNQ--ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

Query: 124 GVARIKGHINVVR 136
            +A    + ++V 
Sbjct: 306 TIAMETANADIVT 318

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 21/100 (21%), Positives = 30/100 (30%)

Query: 37  RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR 96
           + +  S +         L  A      +      +  GA++N    G    TPL  A   
Sbjct: 186 KPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA 245

Query: 97  GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                   LL  GAN    +      L  A I GH  +  
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 421 EGPIRYPSVENSVADL----------HLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGA 470
           EG   +P   N   DL          H+ V ++       +   +   C IC E   +  
Sbjct: 288 EGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYC-EMGSTFQLCKICAENDKDVK 346

Query: 471 CVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKI--NQVIRLY 508
             PCGH+  C SCL+   +++   CP CR +I   + I + 
Sbjct: 347 IEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.4 bits (123), Expect = 7e-09
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 446 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502
           S+ N     +   C IC +  V    +PC H+  C  C+         C +CR +I 
Sbjct: 5   SSGNTAPSLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIP 60

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 454 GSSSSCVICWEAPVEGACV-------PCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQV 504
           G+  SC IC +   E            CGH+  C  CL +       CP CR KI   + 
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRY 59

Query: 505 IRLY 508
             +Y
Sbjct: 60  HPIY 63

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 446 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 504
           S+   +++     C IC +A        C H   C SC  E       C +C      +
Sbjct: 5   SSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI 62

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 10/71 (14%)

Query: 447 ASNVKDDGSSSSCVICWE-------APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 499
            +       + SC IC +                CGH+  C  CL +       CP CR 
Sbjct: 1   GTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRK 59

Query: 500 KI--NQVIRLY 508
           KI   +   +Y
Sbjct: 60  KINHKRYHPIY 70

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 458 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 510
            C+IC E  +E   + C H   C  C++E   +K +CP+CR  I        +
Sbjct: 66  QCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKTYSLVL 117

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 506
            +  C IC E P   +   PC H   C  C++    +   CP+C+  +  V+ 
Sbjct: 4   VAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 450 VKDDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSE-IKAKKGDCPVCRTKINQ 503
           V+       C IC E   +    P C  +  C SC+   +  ++  CP CR  +  
Sbjct: 16  VESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 446 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQV 504
              +     S   C IC E  VE   +PC H   C  C      K    CP CR +++  
Sbjct: 5   LPKDAIPSLSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSSW 63

Query: 505 IRLYT 509
            R +T
Sbjct: 64  TRYHT 68

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 446 SASNVKDDGSSSSCVICWEAPVEGACV-------PCGHMAGCMSCLSEIKAKKGDCPVCR 498
           S + ++  G+ S C IC +   E            CGH+  C  CL +       CP CR
Sbjct: 6   SGTGLRPSGTVS-CPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCR 63

Query: 499 TKINQ 503
            KIN 
Sbjct: 64  KKINH 68

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ 503
           C  C           CGH   C SC++ + +     C  C+  I +
Sbjct: 18  CEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 38/264 (14%), Positives = 68/264 (25%), Gaps = 85/264 (32%)

Query: 45  WMDKEGKTPLIVACMD----SGLINV----AKTLI--ELGANINAYRPGGRGGTPLHHAA 94
              K  +  L+V  +     +   N      K L+        +           L H +
Sbjct: 238 LKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 95  KRGLEP--TVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRA-IESHICYFCGW 148
              L P     LLL        R  D    L    +  +   ++++   I   +  +  W
Sbjct: 296 M-TLTPDEVKSLLLKY---LDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 149 LREFYGP------SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE-LVIYPSLQDVQ- 200
                        S L  L P    +                   F+ L ++P       
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRK------------------MFDRLSVFP--PSAHI 387

Query: 201 PRAVIA-LWKAKIDE------PKFH-------QPDPS-LTIYDQATKIR----------- 234
           P  +++ +W   I         K H       QP  S ++I     +++           
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 235 -----YKFASANEGDKHQLQWLDN 253
                Y      + D     +LD 
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQ 471

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 458 SCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKINQ 503
            C+ C E         C H   C  CL    +A+   CP CR  + +
Sbjct: 54  QCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 32/128 (25%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 380 KQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLP 439
                   L  P      S    +S SA          +  +  IR       + D  L 
Sbjct: 6   HHHHHSSGL-VPRGSPSASKVYKASDSAEAIEAFQLTPQQ-QHLIREDCQNQKLWDEVLS 63

Query: 440 VLEDGVSASNVKDDGSSSSCVICWE---APVEGACVPCGHMAGCMSCLSE-IKAKKGDCP 495
            L +G +   +K    S  CV C E    PV      C H   C  CL    KA+   CP
Sbjct: 64  HLVEGPNF--LKKLEQSFMCVCCQELVYQPVT---TECFHNV-CKDCLQRSFKAQVFSCP 117

Query: 496 VCRTKINQ 503
            CR  + Q
Sbjct: 118 ACRHDLGQ 125

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 447 ASNVKDDGSSSSCVICWE----APVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKI 501
           + +         C +C E      +      CG+   C  C   I+    G CP CR   
Sbjct: 2   SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPY 60

Query: 502 NQ 503
            +
Sbjct: 61  PE 62

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 458 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 502
            C IC  A  E    PCGH   C +C+ +     G  CPV    + 
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILL 64

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 446 SASNVKDDGSSSSCVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 502
           S+ N+ +      C IC              C H   C SC+         CP C   ++
Sbjct: 5   SSGNLSELTPYILCSICKGYLIDAT--TITECLH-TFCKSCIVRHFYYSNRCPKCNIVVH 61

Query: 503 Q 503
           Q
Sbjct: 62  Q 62

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 458 SCVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503
            C IC+E     +      C H   C  C+ +  + K  CP C   + +
Sbjct: 24  RCGICFEYFNIAM--IIPQCSH-NYCSLCIRKFLSYKTQCPTCCVTVTE 69

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 459 CVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503
           CV+C            + C H   C +C+         CP+C  ++++
Sbjct: 18  CVLCGGYFIDAT--TIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 446 SASNVKDDGSSSSCVICWEAPVEGACVP----CGHMAGCMSCLSEIKAKKGD---CPVCR 498
           S+ N+        C IC E+  E    P    CGH   C  CL ++ A   +   CP C 
Sbjct: 5   SSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCS 63

Query: 499 --TKINQVIRL 507
             T+I  + +L
Sbjct: 64  KITRITSLTQL 74

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 446 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
           S+  VK       C IC +       +PC H + C  C+ +   +  +CP+CR ++
Sbjct: 5   SSGRVKQLTDEEECCICMD-GRADLILPCAH-SFCQKCIDKWSDRHRNCPICRLQM 58

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 458 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ 503
            C IC  A  E    PCGH   C +C+ +     G  CPV    + +
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 446 SASNVKDDGSSSSCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
           S+  VK+      C +C E       +   PC H      CL +    +  CP+C   +
Sbjct: 5   SSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPV 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	510
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.5
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.49
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.39
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.25
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.19
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.15
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.15
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.12
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.11
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.09
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.08
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.07
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.06
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.05
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.02
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.02
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.02
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.99
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.98
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.98
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.98
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.97
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.96
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.95
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.94
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.94
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.93
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.93
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.92
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.92
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.9
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.89
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.87
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.86
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.83
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.83
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.81
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.81
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.8
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.77
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.76
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.76
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.75
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.74
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.74
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.73
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.72
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.72
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.71
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.7
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.69
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.67
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.66
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.63
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.63
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.57
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.51
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.47
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.38
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.37
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.33
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.28
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.15
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.04
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.99
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.84
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.68
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.67
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.43
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.2
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	96.02
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	93.22
3nw0_A	238	Non-structural maintenance of chromosomes element	93.09
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.15

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.5e-36  Score=269.35  Aligned_cols=159  Identities=31%  Similarity=0.392  Sum_probs=150.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCC
Q 010439           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (510)
Q Consensus        19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~   98 (510)
                      +.|+.||+.|+.++|+.||++|+|+|.+|.+|+||||+|+.. ++.+++++|+++|++++.+  |..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~-~~~~~~~~ll~~gad~~~~--d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhhh--ccCCCCHHHHHHHcCC
Confidence            579999999999999999999999999999999999999997 9999999999999999998  8999999999999999


Q ss_pred             HHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCC
Q 010439           99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (510)
Q Consensus        99 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~g  178 (510)
                      .++|++|+++|+|++.+|..|+||||+|+..|+.++|++|+++|++++  .+|.+|+|||| +|+..++.+++++|+++|
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLD-LAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999  89999999999 999999999999999999


Q ss_pred             CCCCC
Q 010439          179 TANPS  183 (510)
Q Consensus       179 a~~~~  183 (510)
                      |+++-
T Consensus       160 A~ie~  164 (169)
T 4gpm_A          160 GWLEH  164 (169)
T ss_dssp             -----
T ss_pred             CCcCC
Confidence            99853

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.3e-36  Score=282.68  Aligned_cols=220  Identities=23%  Similarity=0.244  Sum_probs=205.8

Q ss_pred             cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCC
Q 010439            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (510)
                      +|.+.++.+|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|+++|++++..  +..|.
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~   78 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKAGALVDPK--DAEGS   78 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCCCCC--CTTSC
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHh-CCHHHHHHHHhCCCCCCCC--CCCCC
Confidence            57788999999999999999999999999999999999999999999999998 9999999999999999988  88999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439           88 TPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (510)
Q Consensus        88 TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~  166 (510)
                      ||||+|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..+
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~  155 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLH-WAAFSG  155 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHC
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHCC
Confidence            9999999999999999999998 8999999999999999999999999999999999999  89999999999 999999


Q ss_pred             CHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCCC
Q 010439          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  243 (510)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~~  243 (510)
                      +.+++++|+++|++++.++..+.++++.++..+....+..++.        .+.+  ++..|+.|+||+++|+.+..
T Consensus       156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------~gad--~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS--------RDSD--VTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT--------TTCC--TTCCCTTSCCHHHHSCTTCH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH--------cCCC--CCccCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999998777765443        3456  67789999999999996553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-36  Score=290.31  Aligned_cols=219  Identities=21%  Similarity=0.181  Sum_probs=168.2

Q ss_pred             cChhhhcCCchHHHHHHHHcC-------------CHHHHHHHHHcCCCCcc-cCCCCChHHHHHHHhCCcHHHHHHHHHc
Q 010439            8 MNQHQQRQSKDELLYQWVIAG-------------DVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIEL   73 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~   73 (510)
                      +++|.+|.+|.||||+|+..|             +.++|++|+++|++++. .|..|.||||+|+.. |+.+++++|+++
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~   79 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY-SRSDAAKRLLEA   79 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHc
Confidence            467889999999999999977             99999999999999865 489999999999998 999999999999


Q ss_pred             CCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccccccccc
Q 010439           74 GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA-NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF  152 (510)
Q Consensus        74 ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~  152 (510)
                      |++++..  |..|+||||+|+..|+.+++++|++++. +++.++..|.||||+|+..|+.+++++|+++|++++  .+|.
T Consensus        80 g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~  155 (253)
T 1yyh_A           80 SADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDD  155 (253)
T ss_dssp             TCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCT
T ss_pred             CCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCC
Confidence            9999998  8999999999999999999999999987 999999999999999999999999999999999999  8999


Q ss_pred             CCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCc
Q 010439          153 YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK  232 (510)
Q Consensus       153 ~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~  232 (510)
                      .|.|||| +|+..++.+++++|+++|++++.++..+.++++.++..++...+..|+..        +++  +++.|..|+
T Consensus       156 ~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--------ga~--~~~~d~~g~  224 (253)
T 1yyh_A          156 LGKSALH-WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH--------FAN--RDITDHMDR  224 (253)
T ss_dssp             TSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--------TCC--TTCCCTTCC
T ss_pred             CCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--------CCC--ccccccCCC
Confidence            9999999 99999999999999999999999999999999999999987777665544        445  667899999


Q ss_pred             ceeeehhcCC
Q 010439          233 IRYKFASANE  242 (510)
Q Consensus       233 t~l~~a~~~~  242 (510)
                      ||+++|....
T Consensus       225 tpl~~A~~~g  234 (253)
T 1yyh_A          225 LPRDIAQERM  234 (253)
T ss_dssp             CHHHHHHHTT
T ss_pred             CHHHHHHHcC
Confidence            9999999543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.2e-36  Score=291.11  Aligned_cols=214  Identities=19%  Similarity=0.128  Sum_probs=187.0

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCC
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (510)
                      +.+|.+|.||||+|+..|+.++|++|+++|++   ++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~   79 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGH   79 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCC
Confidence            56789999999999999999999999999998   888999999999999998 9999999999999999998  89999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCC-----------------------------------------------CccCCCCCC
Q 010439           88 TPLHHAAKRGLEPTVRLLLSCGAN-----------------------------------------------ALVRNDDCH  120 (510)
Q Consensus        88 TpLh~A~~~g~~~~v~~Ll~~gad-----------------------------------------------~~~~d~~g~  120 (510)
                      ||||+|+..|+.+++++|+++|++                                               ++.+|..|.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            999999999999999999998765                                               677899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcccccccccccc-CCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccccccccccccc
Q 010439          121 TALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV  199 (510)
Q Consensus       121 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~  199 (510)
                      ||||+|+..|+.+++++|+++|++++  .++. .|.|||| +|+..++.+++++|+++|++++.++..+.+|++.+...+
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~  236 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP  236 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHH-HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence            99999999999999999999999999  7775 4999999 999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439          200 QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (510)
Q Consensus       200 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~  240 (510)
                      +...+..|+..        +++  ++..+..|.||++++..
T Consensus       237 ~~~~v~~Ll~~--------ga~--~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          237 NPILARLLRAH--------GAP--EPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             CHHHHHHHHHT--------TCC--CCCCC------------
T ss_pred             CcHHHHHHHHc--------CCC--cCcCCCcccccccccCC
Confidence            87776655443        556  77899999999999883

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=287.53  Aligned_cols=224  Identities=20%  Similarity=0.168  Sum_probs=203.8

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp   89 (510)
                      .+.++.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~t~  128 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWHTP  128 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHT-TCHHHHHHHHHTTCCSSCC--CTTCCCH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCC--CCCCCCH
Confidence            456789999999999999999999999999999999999999999999997 9999999999999999998  8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHH
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK  169 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~  169 (510)
                      ||+|+..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~  204 (285)
T 3d9h_A          129 LFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRA  204 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHH
T ss_pred             HHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcHH
Confidence            999999999999999999999998654 59999999999999999999999999999  89999999999 999999999


Q ss_pred             HHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCCCChHHHH
Q 010439          170 IWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQ  249 (510)
Q Consensus       170 ~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~~~~~ql~  249 (510)
                      ++++|+++|++++. +..+.++++.++..++...+..|+..        +.+  ++..|..|+|||++|+. ..+..+++
T Consensus       205 ~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--------gad--~~~~d~~g~t~l~~A~~-~~~~~~~L  272 (285)
T 3d9h_A          205 CVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF--------GAD--TQAKNAEGKRPVELVPP-ESPLAQLF  272 (285)
T ss_dssp             HHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT--------TCC--TTCCCTTSCCGGGGSCT-TSHHHHHH
T ss_pred             HHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--------CCC--CCCcCCCCCCHHHHhcC-ccHHHHHH
Confidence            99999999999985 77899999999999998777665543        445  67889999999999994 35555555


Q ss_pred             HHH
Q 010439          250 WLD  252 (510)
Q Consensus       250 ~~~  252 (510)
                      ..+
T Consensus       273 l~~  275 (285)
T 3d9h_A          273 LER  275 (285)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=7.5e-35  Score=275.69  Aligned_cols=214  Identities=21%  Similarity=0.164  Sum_probs=196.8

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g   86 (510)
                      +.+|.+|.||||+|+..|+.++|++|++    .|.+++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g   79 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHG   79 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCC
Confidence            5679999999999999999999999997    7899999999999999999998 9999999999999999998  8899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCC----CCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccc-cCCCCHHHHH
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGA----NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEAL  161 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~t~L~~~  161 (510)
                      +||||+|+..|+.+++++|++++.    +++..|..|.||||+|+..|+.+++++|+++|++++  .++ ..|.|||| +
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~-~  156 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLI-H  156 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHH-H
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHH-H
Confidence            999999999999999999999987    899999999999999999999999999999999999  777 78999999 9


Q ss_pred             hhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439          162 APQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (510)
Q Consensus       162 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~  240 (510)
                      |+..++.+++++|+++|++++.++..+.++++.+...++...+..|+..        +.+  ++..|..|+||+++|..
T Consensus       157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------ga~--~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS--------GAD--SSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--------TCC--TTCCCTTSCCTTTTCSS
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--------CCC--CCCcCCCCCCHHHHHHh
Confidence            9999999999999999999999999999999999999987777765543        445  66789999999999984

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.3e-35  Score=294.83  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=197.1

Q ss_pred             cccccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCC
Q 010439            4 SLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPG   83 (510)
Q Consensus         4 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d   83 (510)
                      ++++++.+.+|.+|.||||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++|++++    +
T Consensus         7 ~~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~----~   81 (364)
T 3ljn_A            7 DFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF-GCVDTAKYLASVGEVHS----L   81 (364)
T ss_dssp             ---------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-CCHHHHHHHHHHCCCCC----C
T ss_pred             hccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCcc----c
Confidence            456788899999999999999999999999999999999999999999999999998 99999999999999776    4


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHC----CCCCcc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHh
Q 010439           84 GRGGTPLHHAAKRGLEPTVRLLLSC----GANALV-----------------RNDDCHTALGVARIKG--HINVVRAIES  140 (510)
Q Consensus        84 ~~g~TpLh~A~~~g~~~~v~~Ll~~----gad~~~-----------------~d~~g~TpL~~A~~~g--~~~~v~~Ll~  140 (510)
                      ..|+||||+|+..|+.+++++|+++    |++++.                 +|..|.||||+|+..|  +.++|++|++
T Consensus        82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~  161 (364)
T 3ljn_A           82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ  161 (364)
T ss_dssp             BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            5899999999999999999999999    888877                 8899999999999999  9999999999


Q ss_pred             ccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCC-----CCCCCccccccccccccccChHHHHHHHHhhcCCC
Q 010439          141 HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA-----NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEP  215 (510)
Q Consensus       141 ~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~-----~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~  215 (510)
                      +|++++  .+|..|.|||| +|+..++.+++++|+++|++     ++..+..+.++++.++..++...+..|+.      
T Consensus       162 ~ga~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------  232 (364)
T 3ljn_A          162 LGASPT--AKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE------  232 (364)
T ss_dssp             HTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT------
T ss_pred             cCCCCc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH------
Confidence            999999  89999999999 99999999999999999999     99999999999999999999877776544      


Q ss_pred             CCCCCCCceEEecCCCcceeeehhcC
Q 010439          216 KFHQPDPSLTIYDQATKIRYKFASAN  241 (510)
Q Consensus       216 ~~~~~~~~~~~~d~~~~t~l~~a~~~  241 (510)
                        .+.+  ++..|..|.|||++|+..
T Consensus       233 --~gad--~~~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          233 --MGID--VNMEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             --TTCC--TTCCCTTSCCHHHHHHHT
T ss_pred             --cCCC--CCCCCCCCCCHHHHHHHh
Confidence              3456  678899999999999954

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.5e-35  Score=280.77  Aligned_cols=216  Identities=21%  Similarity=0.203  Sum_probs=170.0

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCC--------CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCC
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS--------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP   82 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~   82 (510)
                      ..+|..+.++||.||..|++++|++||+.|++        ++..|..|.||||+|+..++...++++|++.|+++|..  
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~--   82 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT--   82 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC--
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc--
Confidence            34577889999999999999999999998875        46677889999999998744456899999999999998  


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHh
Q 010439           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA  162 (510)
Q Consensus        83 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A  162 (510)
                      |..|+||||+|+..|+.++|++|++.|++++.++..|.||||+|+..++.+++++|+++|++++  .+|..|.|||| +|
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~-~A  159 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLI-YA  159 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHH-HH
Confidence            8999999999999999999999999999999999999999999999999999999999999999  89999999999 99


Q ss_pred             hhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439          163 PQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (510)
Q Consensus       163 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~  241 (510)
                      +..|+.+++++|+++|++++.++..+.++++.++..++...+..|+.        .+++  ++++|+.|+|||++|+.+
T Consensus       160 ~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~--------~Gad--~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          160 CSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL--------HGAS--VQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             HHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCTTSCCSGGGSCTT
T ss_pred             HHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH--------CCCC--CCCcCCCCCCHHHHHHhC
Confidence            99999999999999999999999999999999999999877776554        3556  778999999999999754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.6e-34  Score=266.57  Aligned_cols=211  Identities=18%  Similarity=0.125  Sum_probs=190.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC-CCCCCChHHHHHH
Q 010439           17 KDELLYQWVIAGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-PGGRGGTPLHHAA   94 (510)
Q Consensus        17 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~-~d~~g~TpLh~A~   94 (510)
                      |+||||+|+..|+.++|+.|++++.++.. .|..|.||||+|+.. |+.+++++|+++|++++... ++..|+||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            78999999999999999999999987654 889999999999997 99999999999995444432 3889999999999


Q ss_pred             HcCCHHHHHHHHHCC--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439           95 KRGLEPTVRLLLSCG--ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (510)
Q Consensus        95 ~~g~~~~v~~Ll~~g--ad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~  172 (510)
                      ..|+.+++++|+++|  ++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  157 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIE  157 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHH
Confidence            999999999999998  8999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HHhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439          173 VVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (510)
Q Consensus       173 ~Ll~~g-a~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~  240 (510)
                      +|+++| ++++.++..+.++++.++..++...+..++...       +.+  ++..|..|+||+++|..
T Consensus       158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~-------ga~--~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY-------GAE--YDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-------CCC--SCCBCTTSCBGGGGCSS
T ss_pred             HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-------CCC--CCccCCCCCcHHHHHHH
Confidence            999999 999999999999999999999988877666222       345  77889999999999974

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.8e-34  Score=272.41  Aligned_cols=190  Identities=19%  Similarity=0.084  Sum_probs=182.6

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CccccCCCCCCChHHH
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPLH   91 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga-~~n~~~~d~~g~TpLh   91 (510)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|+ +++..  +..|+||||
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~  129 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPLI  129 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCC--CTTCCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccc--CCCCCcHHH
Confidence            488999999999999999999999999999999999999999999998 99999999999997 89988  899999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHH
Q 010439           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (510)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~  171 (510)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~-~A~~~~~~~~v  206 (253)
T 1yyh_A          130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETA  206 (253)
T ss_dssp             HHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  89999999999 99999999999


Q ss_pred             HHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439          172 VVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (510)
Q Consensus       172 ~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~  208 (510)
                      ++|+++|++++.++..+.++++.+.+.++...+..+.
T Consensus       207 ~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          207 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999877776543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-33  Score=262.89  Aligned_cols=200  Identities=20%  Similarity=0.098  Sum_probs=187.0

Q ss_pred             ccChhhh-cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CccccCCCC
Q 010439            7 SMNQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGG   84 (510)
Q Consensus         7 ~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga-~~n~~~~d~   84 (510)
                      +.+.+.. |.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++++ +++..  +.
T Consensus        14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~   90 (223)
T 2f8y_A           14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MH   90 (223)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHBTTSCTTCC--CT
T ss_pred             CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CC
Confidence            3444443 78999999999999999999999999999999999999999999998 99999999999987 88887  88


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhh
Q 010439           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (510)
Q Consensus        85 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~  164 (510)
                      .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+.
T Consensus        91 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~  167 (223)
T 2f8y_A           91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAR  167 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHH
T ss_pred             CCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHH-HHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999  89999999999 9999


Q ss_pred             cCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhc
Q 010439          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI  212 (510)
Q Consensus       165 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~  212 (510)
                      .++.+++++|+++|++++.++..+.++++.+...++...+..|+....
T Consensus       168 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            999999999999999999999999999999999998887776655443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-33  Score=273.02  Aligned_cols=220  Identities=21%  Similarity=0.188  Sum_probs=192.6

Q ss_pred             cChhhh-cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439            8 MNQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (510)
Q Consensus         8 ~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g   86 (510)
                      .+.+.+ +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g  105 (285)
T 1wdy_A           29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVNEC--DFYG  105 (285)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTTC
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--Cccc
Confidence            445555 67789999999999999999999999999999999999999999998 8999999999999999988  8899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccC----------CCCCCcHHHHHHHcCCHHHHHHHHhc-cccccccccccCCC
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGP  155 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~----------d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~  155 (510)
                      +||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|+++ |++++  .+|..|.
T Consensus       106 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~  183 (285)
T 1wdy_A          106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGR  183 (285)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSC
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCC
Confidence            99999999999999999999999998877          77899999999999999999999987 89998  8899999


Q ss_pred             CHHHHHhhhcCC----HHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCC
Q 010439          156 SFLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT  231 (510)
Q Consensus       156 t~L~~~A~~~~~----~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~  231 (510)
                      |||| +|+..++    .+++++|+++|++++.++..+.++++.++..++...+..++..       .+.+  ++..|..|
T Consensus       184 t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------~g~~--~~~~~~~g  253 (285)
T 1wdy_A          184 NALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-------EHIE--INDTDSDG  253 (285)
T ss_dssp             CHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS-------SSCC--TTCCCTTS
T ss_pred             CHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-------cCCC--ccccCCCC
Confidence            9999 8888888    8999999999999999998999999999998887777765542       2334  66778889


Q ss_pred             cceeeehhcCC
Q 010439          232 KIRYKFASANE  242 (510)
Q Consensus       232 ~t~l~~a~~~~  242 (510)
                      +|||++|+...
T Consensus       254 ~t~l~~A~~~~  264 (285)
T 1wdy_A          254 KTALLLAVELK  264 (285)
T ss_dssp             CCHHHHHHHTT
T ss_pred             CcHHHHHHHcC
Confidence            99999998543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.8e-34  Score=283.35  Aligned_cols=217  Identities=22%  Similarity=0.152  Sum_probs=199.3

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g   86 (510)
                      +.+.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|
T Consensus        48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~--~~~g  124 (351)
T 3utm_A           48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY-GHYEVTELLLKHGACVNAM--DLWQ  124 (351)
T ss_dssp             TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCC
Confidence            466778899999999999999999999999999999999999999999999997 9999999999999999998  8999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCC--------------------------------------------------
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------------------------------------------  116 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d--------------------------------------------------  116 (510)
                      +||||+|+..|+.+++++|+++|++++..+                                                  
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN  204 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence            999999999999999999999999987654                                                  


Q ss_pred             ----CCCCcHHHHHHHc---CCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccc
Q 010439          117 ----DDCHTALGVARIK---GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE  189 (510)
Q Consensus       117 ----~~g~TpL~~A~~~---g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~  189 (510)
                          ..|.||||+|+..   +..+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.
T Consensus       205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~  281 (351)
T 3utm_A          205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLH-VAAERAHNDVMEVLHKHGAKMNALDSLGQ  281 (351)
T ss_dssp             CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence                4567999999999   55899999999999999  89999999999 99999999999999999999999999999


Q ss_pred             ccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehh
Q 010439          190 LVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (510)
Q Consensus       190 ~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~  239 (510)
                      ++++.++..++...+..|+..        +++  +++.|..|+||++++.
T Consensus       282 t~L~~A~~~~~~~~v~~Ll~~--------gad--~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          282 TALHRAALAGHLQTCRLLLSY--------GSD--PSIISLQGFTAAQMGN  321 (351)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT--------TCC--TTCCCTTSCCHHHHSC
T ss_pred             CHHHHHHHcCcHHHHHHHHHc--------CCC--CCCcCCCCCChhhhhh
Confidence            999999999997777765543        446  6678999999999984

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.7e-33  Score=264.79  Aligned_cols=190  Identities=22%  Similarity=0.188  Sum_probs=179.9

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp   89 (510)
                      .+.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|+||
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~  109 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GXDEIVKALLVKGAHVNAV--NQNGCTP  109 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc-CHHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            456788999999999999999999999999999999999999999999998 9999999999999999998  8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHH
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK  169 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~  169 (510)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~  186 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLH-LACDEERVE  186 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHH-HHHHCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999  89999999999 999999999


Q ss_pred             HHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439          170 IWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (510)
Q Consensus       170 ~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~  205 (510)
                      ++++|+++|++++.++..+.+|++.+....+...+.
T Consensus       187 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  222 (231)
T 3aji_A          187 EAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKR  222 (231)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHH
Confidence            999999999999999999999999997655544333

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4e-35  Score=277.28  Aligned_cols=215  Identities=20%  Similarity=0.208  Sum_probs=189.2

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGA----SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g   86 (510)
                      +.+|.+|.||||+|+..|+.++|++|++.+.    ++|.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g   78 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRG   78 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCC
Confidence            5678999999999999999999999998765    7999999999999999998 9999999999999999998  8999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCC------CccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccccccccc-CCCCHHH
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGAN------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLE  159 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~g~t~L~  159 (510)
                      +||||+|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|++++  .++. .|.||||
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~  156 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALH  156 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCCHHH
Confidence            9999999999999999999999876      57788899999999999999999999999999999  8887 9999999


Q ss_pred             HHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehh
Q 010439          160 ALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (510)
Q Consensus       160 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~  239 (510)
                       +|+..++.+++++|+++|++++.++..+.++++.+...++...+..|+.        .++++.....+..+.|+++...
T Consensus       157 -~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~--------~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          157 -LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ--------LTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             -HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT--------TSCGGGSSCCCCCTTTCCCCC-
T ss_pred             -HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHH--------cchhhhhcCCccchHHHHhhhc
Confidence             9999999999999999999999999999999999999998776665443        3455555667788888888766

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-33  Score=265.62  Aligned_cols=211  Identities=17%  Similarity=0.190  Sum_probs=195.7

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~   92 (510)
                      +..+.++||.|+..|+++.|+.|++.+. .++..|..|.||||+|+.. |+.+++++|+++|++++..  |..|+||||+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~   79 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHI   79 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHc-CcHHHHHHHHHhCCCCCCc--CCCCCCHHHH
Confidence            4567899999999999999999999775 4677899999999999998 9999999999999999988  8999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (510)
Q Consensus        93 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~  172 (510)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..++.++++
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  156 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMH-RAAAKGNLKMVH  156 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHH
T ss_pred             HHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439          173 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (510)
Q Consensus       173 ~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~  240 (510)
                      +|+++|++++.++..+.++++.+...++...+..|+..        +.+  ++..|..|+||+++|..
T Consensus       157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------ga~--~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--------GAS--IYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--------TCC--SCCCCTTSCCHHHHSCH
T ss_pred             HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC--------CCC--CCCCCCCCCCHHHHHHh
Confidence            99999999999999999999999999987777665543        446  67789999999999974

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.7e-33  Score=263.58  Aligned_cols=198  Identities=21%  Similarity=0.231  Sum_probs=188.3

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcC-CCccccCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGR   85 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g-a~~n~~~~d~~   85 (510)
                      +.+++..+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++| ++++..  +..
T Consensus        34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~  110 (237)
T 3b7b_A           34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNCQ--DDG  110 (237)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT-TCHHHHHHHHTTTCCCTTCC--CTT
T ss_pred             CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCC
Confidence            567788899999999999999999999999999999999999999999999998 9999999999999 899988  889


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~  165 (510)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       111 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~  187 (237)
T 3b7b_A          111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLH-IAARE  187 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010439          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  210 (510)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~  210 (510)
                      ++.+++++|+++|++++.++..+.++++.+...++...+..+.+.
T Consensus       188 ~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~  232 (237)
T 3b7b_A          188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA  232 (237)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887776665543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-33  Score=273.84  Aligned_cols=185  Identities=21%  Similarity=0.139  Sum_probs=162.7

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC-------------
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-------------   76 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~-------------   76 (510)
                      .+.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++             
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQS  116 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcc
Confidence            677889999999999999999999999999999999999999999999997 999999999998866             


Q ss_pred             ----------------------------------ccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCC-CCc
Q 010439           77 ----------------------------------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-CHT  121 (510)
Q Consensus        77 ----------------------------------~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~T  121 (510)
                                                        ++..  +..|+||||+|+..|+.+++++|+++|++++.++.. |+|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t  194 (282)
T 1oy3_D          117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE--NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT  194 (282)
T ss_dssp             ---------------------------CCCGGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc--CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcC
Confidence                                              5655  789999999999999999999999999999999865 999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccC
Q 010439          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (510)
Q Consensus       122 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~  200 (510)
                      |||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.+|+..+..+..
T Consensus       195 pL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          195 PLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCc--ccccCCCCHHH-HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            9999999999999999999999999  89999999999 9999999999999999999999999999999998876553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.8e-33  Score=264.85  Aligned_cols=194  Identities=20%  Similarity=0.163  Sum_probs=183.5

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC----CccccC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYR   81 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga----~~n~~~   81 (510)
                      .+.+.+.+|..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. ++.+++++|+++++    +++.. 
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~-  112 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEAR-  112 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCC-
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccccc-
Confidence            3567788899999999999999999999999999999999999999999999997 99999999999998    78877 


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHH
Q 010439           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEA  160 (510)
Q Consensus        82 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~  160 (510)
                       |..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| 
T Consensus       113 -~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-  188 (241)
T 1k1a_A          113 -NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALH-  188 (241)
T ss_dssp             -CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-
T ss_pred             -CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-
Confidence             8899999999999999999999999999999999 889999999999999999999999999999  89999999999 


Q ss_pred             HhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439          161 LAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (510)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~  205 (510)
                      +|+..++.+++++|+++|++++.++..+.++++.+...+....+.
T Consensus       189 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~  233 (241)
T 1k1a_A          189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  233 (241)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHh
Confidence            999999999999999999999999999999999999877654443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=273.18  Aligned_cols=185  Identities=19%  Similarity=0.178  Sum_probs=151.9

Q ss_pred             hhhhcCCchHHHHHHHHcCCHH-HHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCCh
Q 010439           10 QHQQRQSKDELLYQWVIAGDVD-AIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~T   88 (510)
                      .+..+..|.||||+|+..++.+ ++++|++.|+++|.+|.+|+||||+|+.. |+.+++++|++.|++++..  +..|.|
T Consensus        45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~~a~~~~~--~~~g~t  121 (269)
T 4b93_B           45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALH-GRADLIPLLLKHGANAGAR--NADQAV  121 (269)
T ss_dssp             ------------------------------CCCCTTCCCTTSCCHHHHHHHT-TCTTHHHHHHHTTCCTTCC--CTTCCC
T ss_pred             ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHhcCCCcCcc--CCCCCC
Confidence            4567788999999999988764 88999999999999999999999999998 9999999999999999998  899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCH
Q 010439           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (510)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~  168 (510)
                      |||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++  .++..|.|||| +|+..|+.
T Consensus       122 ~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh-~A~~~g~~  198 (269)
T 4b93_B          122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALH-EAVIEKHV  198 (269)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCH
T ss_pred             ccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHH-HHHHcCCH
Confidence            9999999999999999999999999999999999999999999999999999999999  89999999999 99999999


Q ss_pred             HHHHHHhhCCCCCCCCCccccccccccccccC
Q 010439          169 KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (510)
Q Consensus       169 ~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~  200 (510)
                      +++++|+++|+|++.++..+++|++.+.+.++
T Consensus       199 ~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999999999999999999999999987654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=5.6e-33  Score=261.60  Aligned_cols=190  Identities=18%  Similarity=0.117  Sum_probs=177.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCc-----cccCCCCCCChH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI-----NAYRPGGRGGTP   89 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~-----n~~~~d~~g~Tp   89 (510)
                      .|+||||+|+..|+.++|++||++ |++++.+|..|+||||+|+.. |+.+++++|+++|+++     +..  |..|+||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAPELVFEPMTSE--LYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGCCCCST--TTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCchhcccccccc--CCCCcCH
Confidence            589999999999999999999998 999999999999999999998 9999999999999987     444  7799999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCC-------------CCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCC
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRND-------------DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPS  156 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~-------------~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t  156 (510)
                      ||+|+..|+.+++++|+++|++++.++.             .|.||||+|+..|+.+++++|+++|++++  .+|..|.|
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t  156 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNT  156 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCC
Confidence            9999999999999999999999998876             79999999999999999999999999999  89999999


Q ss_pred             HHHHHhhhcCCHHHH----HHHhhCCCCC------CCCCccccccccccccccChHHHHHHHHhh
Q 010439          157 FLEALAPQLMSRKIW----VVVIPCGTAN------PSKPLRFELVIYPSLQDVQPRAVIALWKAK  211 (510)
Q Consensus       157 ~L~~~A~~~~~~~~~----~~Ll~~ga~~------~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~  211 (510)
                      ||| +|+..++.+++    ++|+++|++.      +.++..+.++++.+...++...+..|+...
T Consensus       157 ~L~-~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          157 VLH-ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             HHH-HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHH-HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999 99999999988    9999999988      478889999999999999988887776544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.8e-33  Score=288.23  Aligned_cols=219  Identities=21%  Similarity=0.158  Sum_probs=185.7

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g   86 (510)
                      +++++..+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. |+.+++++|+++|+++|.+  +..|
T Consensus         4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g   80 (437)
T 1n11_A            4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDD   80 (437)
T ss_dssp             -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTS
T ss_pred             CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCC--CCCC
Confidence            567788899999999999999999999999999999999999999999999998 9999999999999999988  8899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~  166 (510)
                      +||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+  ..+..|.|||| +|+..+
T Consensus        81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~-~A~~~g  157 (437)
T 1n11_A           81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLH-VAAKYG  157 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHH-HHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999888  78889999999 999999


Q ss_pred             CHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (510)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~  241 (510)
                      +.+++++|+++|++++..+..+.++++.++..++...+..++..        +.+  ++..+..|.|||++|+..
T Consensus       158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------g~~--~~~~~~~g~t~L~~A~~~  222 (437)
T 1n11_A          158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR--------GGS--PHSPAWNGYTPLHIAAKQ  222 (437)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG--------TCC--SCCCCTTCCCHHHHHHHT
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--------CCC--CCCcCCCCCCHHHHHHHc
Confidence            99999999999999999998999999999988887776654433        223  344566677888877743

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=267.29  Aligned_cols=184  Identities=18%  Similarity=0.195  Sum_probs=176.2

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g   86 (510)
                      +.+++.+|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..   ..|
T Consensus        82 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~---~~g  157 (285)
T 3d9h_A           82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQPE---SDL  157 (285)
T ss_dssp             TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSSCS---CTT
T ss_pred             CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCCCCC---CCC
Confidence            467788899999999999999999999999999999999999999999999998 9999999999999999864   469


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~  166 (510)
                      +||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++   .+..|.|||| +|+..+
T Consensus       158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~~~g~t~L~-~A~~~~  233 (285)
T 3d9h_A          158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLH-AVVRTA  233 (285)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---CCBTTBCHHH-HHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC---CCCCCCCHHH-HHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999998   4889999999 999999


Q ss_pred             CHHHHHHHhhCCCCCCCCCccccccccccccc
Q 010439          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (510)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~  198 (510)
                      +.+++++|+++|++++.++..+.++++.+...
T Consensus       234 ~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          234 SEELACLLMDFGADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence            99999999999999999999999999999854

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.4e-34  Score=287.16  Aligned_cols=221  Identities=16%  Similarity=0.132  Sum_probs=199.9

Q ss_pred             cChhhhc-CCchHHHHHHHHcCCHHHHHHHH--------HcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCcc
Q 010439            8 MNQHQQR-QSKDELLYQWVIAGDVDAIRALR--------SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN   78 (510)
Q Consensus         8 ~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n   78 (510)
                      .+++.+| ..|.||||+|+..|+.++|++|+        ++|+++|.+|..|.||||+|+.. |+.+++++|+++|++++
T Consensus       115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~~~  193 (373)
T 2fo1_E          115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGADPT  193 (373)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSC
T ss_pred             ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHc-ChHHHHHHHHHCCCCCc
Confidence            4566777 78999999999999998888776        79999999999999999999998 99999999999999999


Q ss_pred             ccCCCCCCChHHHHHHHcCCHHHHHHHHHCC---CCCccCCCCCCcHHHHHHHcC---CHHHHHHHHhccccccc-----
Q 010439           79 AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKG---HINVVRAIESHICYFCG-----  147 (510)
Q Consensus        79 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~g~TpL~~A~~~g---~~~~v~~Ll~~ga~~~~-----  147 (510)
                      ..  |..|+||||+|+..|+.+++++|++++   ++++..|..|.||||+|+..+   +.+++++|+++|++++.     
T Consensus       194 ~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~  271 (373)
T 2fo1_E          194 IY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR  271 (373)
T ss_dssp             CC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred             cc--CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccc
Confidence            98  899999999999999999999999998   899999999999999999998   89999999999999871     


Q ss_pred             -cccccCCCCHHHHHhhhcCCHHHHHHHhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceE
Q 010439          148 -WLREFYGPSFLEALAPQLMSRKIWVVVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLT  225 (510)
Q Consensus       148 -~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~  225 (510)
                       ..+|..|.|||| +|+..++.+++++|++++ ++++.++..+.++++.++..++...+..|+..        +++  ++
T Consensus       272 ~~~~d~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--------gad--~~  340 (373)
T 2fo1_E          272 KDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ--------GAS--VE  340 (373)
T ss_dssp             TSSSSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--------TCC--SS
T ss_pred             cCcccccCCCHHH-HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc--------CCC--cc
Confidence             125778999999 999999999999999876 99999999999999999999998777765543        456  77


Q ss_pred             EecCCCcceeeehhcCC
Q 010439          226 IYDQATKIRYKFASANE  242 (510)
Q Consensus       226 ~~d~~~~t~l~~a~~~~  242 (510)
                      ..|..|+|||++|+...
T Consensus       341 ~~d~~g~t~l~~A~~~g  357 (373)
T 2fo1_E          341 AVDATDHTARQLAQANN  357 (373)
T ss_dssp             CCCSSSCCHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHcC
Confidence            78999999999999543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.3e-32  Score=256.48  Aligned_cols=183  Identities=19%  Similarity=0.123  Sum_probs=173.3

Q ss_pred             hhcCCchHHHHHHHHcCCHHHHHHHHHcC--CCCcc-cCCCCChHHHHHHHhCCcHHHHHHHHHcC--CCccccCCCCCC
Q 010439           12 QQRQSKDELLYQWVIAGDVDAIRALRSQG--ASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELG--ANINAYRPGGRG   86 (510)
Q Consensus        12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g--a~~n~~~~d~~g   86 (510)
                      .++.+|.||||+|+..|+.++|++|+++|  .+++. .|..|.||||+|+.. |+.+++++|+++|  ++++..  +..|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~--~~~g  107 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKI--TNQG  107 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH-CCHHHHHHHHSSSSCCCTTCC--CTTC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccccC--CcCC
Confidence            46889999999999999999999999999  56666 788999999999998 9999999999999  888887  8899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcc-ccccccccccCCCCHHHHHhhhc
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQL  165 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~t~L~~~A~~~  165 (510)
                      +||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++| ++++  .+|..|.|||| +|+..
T Consensus       108 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~-~A~~~  184 (228)
T 2dzn_A          108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAE  184 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHT
T ss_pred             CCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHH-HHHHc
Confidence            99999999999999999999999999999999999999999999999999999999 9999  89999999999 99999


Q ss_pred             CCHHHHHHHh-hCCCCCCCCCccccccccccccccC
Q 010439          166 MSRKIWVVVI-PCGTANPSKPLRFELVIYPSLQDVQ  200 (510)
Q Consensus       166 ~~~~~~~~Ll-~~ga~~~~~~~~~~~~l~~a~~~~~  200 (510)
                      ++.+++++|+ ++|++++.++..+.++++.+.+...
T Consensus       185 ~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~  220 (228)
T 2dzn_A          185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV  220 (228)
T ss_dssp             TCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTH
T ss_pred             CCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHH
Confidence            9999999999 9999999999999999999976543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1e-32  Score=275.09  Aligned_cols=217  Identities=21%  Similarity=0.175  Sum_probs=186.7

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCccccC----------
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYR----------   81 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~----------   81 (510)
                      .+.+|.|+||.||++|++++|++||++|+++|.++. .|+||||+||.. |+.++|++||++|++++..+          
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            345689999999999999999999999999999875 599999999998 99999999999998776532          


Q ss_pred             ---------------------CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC----------CCCCCcHHHHHHHcC
Q 010439           82 ---------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKG  130 (510)
Q Consensus        82 ---------------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~----------d~~g~TpL~~A~~~g  130 (510)
                                           .|..|+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                                 2567999999999999999999999999988754          456899999999999


Q ss_pred             CHHHHHHHHh-ccccccccccccCCCCHHHHHhhhcCC----HHHHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439          131 HINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (510)
Q Consensus       131 ~~~~v~~Ll~-~ga~~~~~~~d~~g~t~L~~~A~~~~~----~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~  205 (510)
                      +.++|++|++ .|++++  .+|..|.|+|| .++..+.    .+++++|+++|++++.++..+.++++.++..+....+.
T Consensus       180 ~~~~v~~LL~~~gad~n--~~d~~g~t~l~-~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~  256 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVN--ACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ  256 (337)
T ss_dssp             CHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHhccCCCcC--ccCCCCCcHHH-HHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence            9999999996 589999  89999999999 5544332    46889999999999999999999999999999888777


Q ss_pred             HHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCC
Q 010439          206 ALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (510)
Q Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~  242 (510)
                      .++..       .+.+  ++..|..|+||||+|+...
T Consensus       257 ~Ll~~-------~~~~--vn~~d~~G~TpL~~A~~~g  284 (337)
T 4g8k_A          257 RLLEQ-------EHIE--INDTDSDGKTALLLAVELK  284 (337)
T ss_dssp             HHHTS-------TTCC--TTCBCTTSCBHHHHHHHTT
T ss_pred             HHHHh-------cCCc--ccCcCCCCCCHHHHHHHcC
Confidence            65432       2345  7788999999999999543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-32  Score=284.86  Aligned_cols=220  Identities=22%  Similarity=0.189  Sum_probs=186.2

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g   86 (510)
                      +.+.+..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|+++|++++..  +..|
T Consensus       169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g  245 (437)
T 1n11_A          169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLLQYGGSANAE--SVQG  245 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCC
Confidence            345666777888888888888888888888888888888888888888888886 8888888888888888877  7788


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~  166 (510)
                      .||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..+
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g  322 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--ATTRMGYTPLH-VASHYG  322 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCSSCCCHHH-HHHHSS
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC--CCCCCCCCHHH-HHHHcC
Confidence            899999988889999999998888888888889999999999999999999999999888  88889999999 899999


Q ss_pred             CHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCC
Q 010439          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (510)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~  242 (510)
                      +.+++++|+++|++++.++..+.++++.++..++...+..|+..        +++  ++..|..|+||+++|....
T Consensus       323 ~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~--------ga~--~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN--------GAS--PNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--------TCC--SCCCCSSSCCHHHHHHHTT
T ss_pred             cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC--------cCC--CCCCCCCCCCHHHHHHHcC
Confidence            99999999999999999988899999999988887776655443        445  6678889999999988544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-32  Score=265.18  Aligned_cols=212  Identities=21%  Similarity=0.193  Sum_probs=192.3

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        15 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      .+|.|+||+|+..|+.++|++|+++|++++.. +..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+|
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A   79 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLR--KKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHH
Confidence            46899999999999999999999999999988 78899999999998 9999999999999999998  89999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccccccc----------ccCCCCHHHHHhh
Q 010439           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR----------EFYGPSFLEALAP  163 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------d~~g~t~L~~~A~  163 (510)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+          +..|.|||| +|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~~~~~~~~~g~t~L~-~A~  156 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALM-DAA  156 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCCCCHHHHHTTCCCCCHHH-HHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc--cccccHHHHHhhccCCCcHHH-HHH
Confidence            99999999999999999999999999999999999999999999999999988  55          788999999 999


Q ss_pred             hcCCHHHHHHHhhC-CCCCCCCCccccccccccccccCh----HHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeeh
Q 010439          164 QLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDVQP----RAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFA  238 (510)
Q Consensus       164 ~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~l~~a~~~~~~----~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a  238 (510)
                      ..++.+++++|++. |++++..+..+.++++.++.....    ..+..++.        .+.+  ++..|..|.||||+|
T Consensus       157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~--------~g~~--~~~~~~~g~t~L~~A  226 (285)
T 1wdy_A          157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD--------HGAD--VNVRGERGKTPLILA  226 (285)
T ss_dssp             HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH--------TTCC--SSCCCTTSCCHHHHH
T ss_pred             HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH--------cCCC--CCCcCCCCCcHHHHH
Confidence            99999999999987 999999999999999999877763    33332222        2445  677888999999999


Q ss_pred             hcCC
Q 010439          239 SANE  242 (510)
Q Consensus       239 ~~~~  242 (510)
                      +...
T Consensus       227 ~~~~  230 (285)
T 1wdy_A          227 VEKK  230 (285)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            9543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7.7e-32  Score=263.75  Aligned_cols=188  Identities=23%  Similarity=0.259  Sum_probs=171.7

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~   92 (510)
                      .+.+|.|+||+|+..|+.++|++||++|+++|..|..|.||||+||.. |+.+++++|+++|++++..  |..|+||||+
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~  112 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHA  112 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcHHHH
Confidence            356789999999999999999999999999999999999999999997 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCccCCC-------------------------------------------------------
Q 010439           93 AAKRGLEPTVRLLLSCGANALVRND-------------------------------------------------------  117 (510)
Q Consensus        93 A~~~g~~~~v~~Ll~~gad~~~~d~-------------------------------------------------------  117 (510)
                      |+..|+.+++++|+++|++++.+|.                                                       
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999999999876654                                                       


Q ss_pred             -----CCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccc
Q 010439          118 -----DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI  192 (510)
Q Consensus       118 -----~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l  192 (510)
                           .|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.+|+
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l  269 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAF  269 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence                 46788899999999999999999999999  89999999999 99999999999999999999999999999999


Q ss_pred             cccccccChHHHHHH
Q 010439          193 YPSLQDVQPRAVIAL  207 (510)
Q Consensus       193 ~~a~~~~~~~~i~~l  207 (510)
                      +.+.++ ....+..+
T Consensus       270 ~~A~~~-~~~~l~~l  283 (299)
T 1s70_B          270 DVADED-ILGYLEEL  283 (299)
T ss_dssp             TSCCSG-GGHHHHHH
T ss_pred             HHHHHH-HHHHHHHH
Confidence            999754 33444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1e-32  Score=278.06  Aligned_cols=230  Identities=17%  Similarity=0.144  Sum_probs=202.2

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHc----CCCccc---
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA---   79 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~----ga~~n~---   79 (510)
                      +++++.+|..|.||||+|+..|+.++|++|+++|++++.  .+|.||||+|+.. |+.+++++|+++    |++++.   
T Consensus        43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~  119 (364)
T 3ljn_A           43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLLN  119 (364)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT-TCHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc-CCHHHHHHHHHhccccCCCHHHHHh
Confidence            567888999999999999999999999999999997644  5799999999997 999999999999    888887   


Q ss_pred             --------------cCCCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccc
Q 010439           80 --------------YRPGGRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC  143 (510)
Q Consensus        80 --------------~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  143 (510)
                                    .  |..|+||||+|+..|  +.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|+
T Consensus       120 ~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~  197 (364)
T 3ljn_A          120 ECDEREVNEIGSHVK--HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP  197 (364)
T ss_dssp             CCCCCCEEEETTEEE--EESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred             hcchHhhhhhccccC--CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                          6  789999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             c-----ccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcC----C
Q 010439          144 Y-----FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKID----E  214 (510)
Q Consensus       144 ~-----~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~----~  214 (510)
                      +     ++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+..|+.....    .
T Consensus       198 ~~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  274 (364)
T 3ljn_A          198 SKSSLRLD--YANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA  274 (364)
T ss_dssp             CSSSCCTT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred             cccccccc--ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhc
Confidence            9     88  89999999999 99999999999999999999999999999999999999998888877754211    1


Q ss_pred             CCCCCCCCceEEecCCCcceeeehhcCCCChH
Q 010439          215 PKFHQPDPSLTIYDQATKIRYKFASANEGDKH  246 (510)
Q Consensus       215 ~~~~~~~~~~~~~d~~~~t~l~~a~~~~~~~~  246 (510)
                      ...+...  ....+..+.++++.++.......
T Consensus       275 ~~~~~~~--~~~~~~~~~~~l~~aa~~~~~~~  304 (364)
T 3ljn_A          275 CPYHNGT--TVLPDRVVWLDFVPAAADPSKQE  304 (364)
T ss_dssp             CTTBSSS--SBCGGGCCCCTTSCSSCCHHHHH
T ss_pred             CcccCcc--cccccccccccchhhhhccCHHH
Confidence            1112222  34567778999988885543333

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.3e-32  Score=251.55  Aligned_cols=163  Identities=25%  Similarity=0.227  Sum_probs=158.0

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp   89 (510)
                      .+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|+||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~  104 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKGSNVNTK--DFSGKTP  104 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTSCCH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcH
Confidence            466899999999999999999999999999999999999999999999998 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHH
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK  169 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~  169 (510)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~  181 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEA-SARIFGRQE  181 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCcHH
Confidence            999999999999999999999999999999999999999999999999999999999  89999999999 999999999


Q ss_pred             HHHHHhhCC
Q 010439          170 IWVVVIPCG  178 (510)
Q Consensus       170 ~~~~Ll~~g  178 (510)
                      ++++|+++|
T Consensus       182 ~v~~Ll~~~  190 (192)
T 2rfm_A          182 VIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999999865

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=9.8e-32  Score=240.57  Aligned_cols=160  Identities=25%  Similarity=0.350  Sum_probs=152.7

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~   92 (510)
                      ....+.++||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|+||||+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~   86 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAV--DHAGMTPLRL   86 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHH
Confidence            356789999999999999999999999999999999999999999998 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (510)
Q Consensus        93 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~  172 (510)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++++
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~  163 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFD-ISIDNGNEDLAE  163 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HHhhCC
Q 010439          173 VVIPCG  178 (510)
Q Consensus       173 ~Ll~~g  178 (510)
                      +|++.|
T Consensus       164 ~L~~~G  169 (169)
T 2y1l_E          164 ILQKLN  169 (169)
T ss_dssp             HHHTC-
T ss_pred             HHHHcC
Confidence            999876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8e-32  Score=247.74  Aligned_cols=189  Identities=21%  Similarity=0.188  Sum_probs=176.9

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~   92 (510)
                      +..+.|+||+|+..|+.+.|+.||.++. +++..|..|.||||+|+.. |+.+++++|+++|++++..  |..|+||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDRGADINLQ--NSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence            3568899999999999999999999886 9999999999999999998 9999999999999999998  8999999999


Q ss_pred             HHHcCCHHHHHHHH-HCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcc-ccccccccccCCCCHHHHHhhhcCC---
Q 010439           93 AAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMS---  167 (510)
Q Consensus        93 A~~~g~~~~v~~Ll-~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~t~L~~~A~~~~~---  167 (510)
                      |+..|+.+++++|+ ..+++++.+|..|.||||+|+..|+.+++++|+++| ++++  .+|..|.|||| +|+..+.   
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~-~A~~~~~~~~  155 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALI-EAVGLREGNQ  155 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHH-HHHHSSCCSH
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHH-HHHHhccchh
Confidence            99999999999999 678899999999999999999999999999999999 8998  89999999999 8998887   


Q ss_pred             --HHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439          168 --RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (510)
Q Consensus       168 --~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~  208 (510)
                        .+++++|+++|++++.++..+.++++.+...++...+..++
T Consensus       156 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  198 (201)
T 3hra_A          156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA  198 (201)
T ss_dssp             HHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence              99999999999999999999999999999988877766543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.7e-32  Score=255.81  Aligned_cols=216  Identities=17%  Similarity=0.129  Sum_probs=197.1

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHH
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpL   90 (510)
                      +..|..|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++... +..|+|||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~-~~~~~t~L   80 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYISKGAIVDQLG-GDLNSTPL   80 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCB-TTTTBCHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHh-CCHHHHHHHHHcCCcchhhc-CCcCCChh
Confidence            44688999999999999999999999999999999999999999999997 99999999999999998763 56699999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCC-HH
Q 010439           91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS-RK  169 (510)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~-~~  169 (510)
                      |+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..++ .+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~  157 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLM-WAAYRTHSVD  157 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCSST
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHH-HHHHhCChHH
Confidence            99999999999999999999999999999999999999999999999999999999  89999999999 7875555 89


Q ss_pred             HHHHHhhCCCCCCCCCc-cccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439          170 IWVVVIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (510)
Q Consensus       170 ~~~~Ll~~ga~~~~~~~-~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~  241 (510)
                      ++++|++.|++++..+. .+.++++.++..++...+..++..        +.+  ++..|..|+||+++|+..
T Consensus       158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------g~~--~~~~~~~g~t~l~~A~~~  220 (240)
T 3eu9_A          158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--------GAN--VDAQNIKGESALDLAKQR  220 (240)
T ss_dssp             THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--------TCC--TTCBCTTSCBHHHHHHHT
T ss_pred             HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--------CCC--CCCcCCCCCCHHHHHHHc
Confidence            99999999999998886 889999999999988877765544        345  567888999999999954

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.98  E-value=2.7e-32  Score=272.54  Aligned_cols=219  Identities=20%  Similarity=0.161  Sum_probs=197.4

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      ..+.+..+..|.|+||.|+..|+.+.|+.||.. +.+++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..
T Consensus        14 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~   90 (351)
T 3utm_A           14 SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY-NRVRIVQLLLQHGADVHAK--DKG   90 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred             ceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCC
Confidence            344566778899999999999999999988885 889999999999999999998 9999999999999999998  899


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccccccc---------------
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR---------------  150 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~---------------  150 (510)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..               
T Consensus        91 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~~~l~~a~~~~  168 (351)
T 3utm_A           91 GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT--LVNCHGKSAVDMAPTPE  168 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCSSHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCcchHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999876  33               


Q ss_pred             ---------------------------------------ccCCCCHHHHHhhhc---CCHHHHHHHhhCCCCCCCCCccc
Q 010439          151 ---------------------------------------EFYGPSFLEALAPQL---MSRKIWVVVIPCGTANPSKPLRF  188 (510)
Q Consensus       151 ---------------------------------------d~~g~t~L~~~A~~~---~~~~~~~~Ll~~ga~~~~~~~~~  188 (510)
                                                             +..|.|||| +|+..   +..+++++|+++|++++.++..+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~-~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g  247 (351)
T 3utm_A          169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAVASLHPKRKQVAELLLRKGANVNEKNKDF  247 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH-HHHHCCSTTHHHHHHHHHHTTCCTTCCCTTC
T ss_pred             hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH-HHHHHhCccHHHHHHHHHHcCCCcCCcCCCC
Confidence                                                   355778999 88887   55899999999999999999999


Q ss_pred             cccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439          189 ELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (510)
Q Consensus       189 ~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~  241 (510)
                      .++++.++..++...+..|+..        +.+  ++..|..|+|||++|+..
T Consensus       248 ~t~L~~A~~~g~~~~v~~Ll~~--------ga~--~n~~d~~g~t~L~~A~~~  290 (351)
T 3utm_A          248 MTPLHVAAERAHNDVMEVLHKH--------GAK--MNALDSLGQTALHRAALA  290 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT--------TCC--TTCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC--------CCC--CCCcCCCCCCHHHHHHHc
Confidence            9999999999998777765543        345  677899999999999944

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=2.7e-32  Score=257.81  Aligned_cols=182  Identities=23%  Similarity=0.142  Sum_probs=166.9

Q ss_pred             cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC------ccccC
Q 010439            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN------INAYR   81 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~------~n~~~   81 (510)
                      .+++.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++      ++.. 
T Consensus        36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~-  113 (236)
T 1ikn_D           36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKAT-  113 (236)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCC-
T ss_pred             HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhHHHHhhcc-
Confidence            35778899999999999999999999999999999999999999999999998 999999999999986      4555 


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHH
Q 010439           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEA  160 (510)
Q Consensus        82 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~  160 (510)
                       +..|+||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.++|++|+++|++++  .+|..|.|||| 
T Consensus       114 -~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-  189 (236)
T 1ikn_D          114 -NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-  189 (236)
T ss_dssp             -CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-
T ss_pred             -CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH-
Confidence             78899999999999999999999999999999998 99999999999999999999999999999  89999999999 


Q ss_pred             HhhhcCCHHHHHHHhhCCCCCC--CCCcccccccccc
Q 010439          161 LAPQLMSRKIWVVVIPCGTANP--SKPLRFELVIYPS  195 (510)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~l~~a  195 (510)
                      +|+..++.+++++|+++|++..  ..+..++++....
T Consensus       190 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             GCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred             HHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence            9999999999999999999765  4444455544433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.98  E-value=2.7e-32  Score=276.13  Aligned_cols=198  Identities=15%  Similarity=0.082  Sum_probs=186.5

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcC---CCccccCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAYRP   82 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g---a~~n~~~~   82 (510)
                      .+++++.+|..|.||||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++|   ++++..  
T Consensus       155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~--  231 (373)
T 2fo1_E          155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEEL--  231 (373)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCC--
T ss_pred             cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhc--
Confidence            4678889999999999999999999999999999999999999999999999998 9999999999998   899988  


Q ss_pred             CCCCChHHHHHHHcC---CHHHHHHHHHCCCCCcc--------CCCCCCcHHHHHHHcCCHHHHHHHHhcc-cccccccc
Q 010439           83 GGRGGTPLHHAAKRG---LEPTVRLLLSCGANALV--------RNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLR  150 (510)
Q Consensus        83 d~~g~TpLh~A~~~g---~~~~v~~Ll~~gad~~~--------~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~  150 (510)
                      |..|+||||+|+..+   +.+++++|+++|++++.        .|..|.||||+|+..|+.++|++|++++ ++++  .+
T Consensus       232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n--~~  309 (373)
T 2fo1_E          232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQ  309 (373)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CC
T ss_pred             CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc--Cc
Confidence            899999999999998   89999999999999986        6779999999999999999999999886 9999  89


Q ss_pred             ccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHH
Q 010439          151 EFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK  209 (510)
Q Consensus       151 d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~  209 (510)
                      |..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+..|..
T Consensus       310 d~~g~TpL~-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~  367 (373)
T 2fo1_E          310 DEDGKTPIM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  367 (373)
T ss_dssp             CTTCCCHHH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCCHHH-HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999 9999999999999999999999999999999999999998777765543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.98  E-value=6.8e-32  Score=239.45  Aligned_cols=159  Identities=22%  Similarity=0.290  Sum_probs=150.5

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHH
Q 010439           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (510)
Q Consensus        15 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~   94 (510)
                      ....|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.  |+.+++++|+++|++++.+  |..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL--GNPEIARRLLLRGANPDLK--DRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS--SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc--CcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH
Confidence            456799999999999999999999999999999999999999985  8899999999999999998  899999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc-ccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010439           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY-FCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (510)
Q Consensus        95 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~d~~g~t~L~~~A~~~~~~~~~~~  173 (510)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++  .+|..|.|||| +|+..++.+++++
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~  155 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSL  155 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 57  89999999999 9999999999999


Q ss_pred             HhhCCCC
Q 010439          174 VIPCGTA  180 (510)
Q Consensus       174 Ll~~ga~  180 (510)
                      |+++|+|
T Consensus       156 Ll~~GAd  162 (162)
T 1ihb_A          156 MQANGAG  162 (162)
T ss_dssp             HHHTC--
T ss_pred             HHHhCCC
Confidence            9999985

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=6.6e-33  Score=270.03  Aligned_cols=191  Identities=15%  Similarity=0.134  Sum_probs=177.6

Q ss_pred             ChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCCh
Q 010439            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (510)
Q Consensus         9 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~T   88 (510)
                      +.+.+|.+|.||||+|+..|+.++|++|+++|++++..|  |.||||+|+.. |+.+++++|+++|++++..  |..|+|
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~t   97 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQF--DDKGNT   97 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTS-SSCHHHHHHHHTTCCTTCC--CTTSCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCc
Confidence            567889999999999999999999999999999998874  99999999997 9999999999999999998  889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCccCCCCC-CcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCC
Q 010439           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDC-HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (510)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g-~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~  167 (510)
                      |||+|+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|+++|++..   ....|.|||| +|+..++
T Consensus        98 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~g~t~L~-~A~~~g~  173 (285)
T 3kea_A           98 ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIH-ITIKNGH  173 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC---CCSTHHHHHH-HHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc---cccCCccHHH-HHHHcCh
Confidence            9999999999999999999999999999999 799999999999999999999998875   1238999999 9999999


Q ss_pred             HHHHHHHhhCCCCCCCCCcccccc-ccccccccChHHHHHHH
Q 010439          168 RKIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVIALW  208 (510)
Q Consensus       168 ~~~~~~Ll~~ga~~~~~~~~~~~~-l~~a~~~~~~~~i~~l~  208 (510)
                      .+++++|+++|++++.++..+.++ ++.+...++...+..|+
T Consensus       174 ~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll  215 (285)
T 3kea_A          174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF  215 (285)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999997 99999888866666543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=3.7e-32  Score=243.84  Aligned_cols=168  Identities=23%  Similarity=0.182  Sum_probs=155.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439           17 KDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (510)
Q Consensus        17 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~   95 (510)
                      +.||||+|+..|+.++|+.|++++.+ ++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHIL--AKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCchhh--cccCCCHHHHHHH
Confidence            46899999999999999999999987 888999999999999998 9999999999999999998  8899999999999


Q ss_pred             cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (510)
Q Consensus        96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll  175 (510)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~  155 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMD-LAVALGYRKVQQVIE  155 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHhCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hCCCCCCCCCccccc
Q 010439          176 PCGTANPSKPLRFEL  190 (510)
Q Consensus       176 ~~ga~~~~~~~~~~~  190 (510)
                      ++|++...++..+.+
T Consensus       156 ~~~~~~~~~~~~~~~  170 (172)
T 3v30_A          156 NHILKLFQSNLVPAD  170 (172)
T ss_dssp             HHHHHHSCC------
T ss_pred             HHHHHHhcccCCCCC
Confidence            999988776655444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=7e-32  Score=240.83  Aligned_cols=160  Identities=23%  Similarity=0.231  Sum_probs=155.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~   95 (510)
                      .|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  +..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLL--GKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHH
Confidence            578999999999999999999999999999999999999999998 9999999999999999998  8999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (510)
Q Consensus        96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll  175 (510)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMD-LAVALGYRSVQQVIE  155 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hCCCCC
Q 010439          176 PCGTAN  181 (510)
Q Consensus       176 ~~ga~~  181 (510)
                      +++++.
T Consensus       156 ~~~~~~  161 (167)
T 3v31_A          156 SHLLKL  161 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.4e-31  Score=243.52  Aligned_cols=165  Identities=20%  Similarity=0.217  Sum_probs=158.2

Q ss_pred             cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHH-HcCCCccccCCCCCC
Q 010439            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRG   86 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll-~~ga~~n~~~~d~~g   86 (510)
                      .+++.++.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+ ..+++++..  |..|
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~g  106 (201)
T 3hra_A           30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKH--NRYG  106 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCC--CTTS
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhccCcccccc--cCCC
Confidence            46788899999999999999999999999999999999999999999999998 9999999999 667799988  8899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCC-CCCccCCCCCCcHHHHHHHcCC-----HHHHHHHHhccccccccccccCCCCHHHH
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGH-----INVVRAIESHICYFCGWLREFYGPSFLEA  160 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~  160 (510)
                      .||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++     .+++++|+++|++++  .+|..|.|||| 
T Consensus       107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-  183 (201)
T 3hra_A          107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRTAMD-  183 (201)
T ss_dssp             CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCCHHH-
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCCHHH-
Confidence            99999999999999999999999 9999999999999999999998     999999999999999  89999999999 


Q ss_pred             HhhhcCCHHHHHHHhhCC
Q 010439          161 LAPQLMSRKIWVVVIPCG  178 (510)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~g  178 (510)
                      +|+..++.+++++|+++|
T Consensus       184 ~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          184 YANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHTCHHHHHHHHTCC
T ss_pred             HHHHcCCHhHHHHHHhcC
Confidence            999999999999999887

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4.2e-32  Score=259.78  Aligned_cols=191  Identities=16%  Similarity=0.132  Sum_probs=156.6

Q ss_pred             CchHHHHHHHHcCCHH----HHHHHHHcCCCCcc----cCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCcccc-----
Q 010439           16 SKDELLYQWVIAGDVD----AIRALRSQGASLEW----MDKEGKTPLIVACMD--SGLINVAKTLIELGANINAY-----   80 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~d~~g~TpL~~A~~~--~~~~~~v~~Ll~~ga~~n~~-----   80 (510)
                      .|+||||+|+..|+.+    ++++|+++|++++.    +|..|+||||+|+..  .|+.+++++|+++|++++..     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3788888888888886    55667778888887    788888888888873  17788888888888777633     


Q ss_pred             ----CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCC-------------CCcHHHHHHHcCCHHHHHHHHh---
Q 010439           81 ----RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-------------CHTALGVARIKGHINVVRAIES---  140 (510)
Q Consensus        81 ----~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-------------g~TpL~~A~~~g~~~~v~~Ll~---  140 (510)
                          +.|..|+||||+|+..|+.+++++|+++|++++.+|..             |.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                12467888888888888888888888888888888876             8888888888888888888888   


Q ss_pred             ccccccccccccCCCCHHHHHhhh--cCCHH-------HHHHHhhCCCCC-------CCCCccccccccccccccChHHH
Q 010439          141 HICYFCGWLREFYGPSFLEALAPQ--LMSRK-------IWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAV  204 (510)
Q Consensus       141 ~ga~~~~~~~d~~g~t~L~~~A~~--~~~~~-------~~~~Ll~~ga~~-------~~~~~~~~~~l~~a~~~~~~~~i  204 (510)
                      +|++++  .+|..|.|||| +|+.  .++.+       ++++|+++|+++       +.++..+.++++.+...++...+
T Consensus       161 ~ga~~n--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          161 QPASLE--ATDSLGNTVLH-ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             CCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCCcC--ccCCCCCCHHH-HHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence            888888  88888888888 7877  77777       888888888888       77888888888888888887777


Q ss_pred             HHHHH
Q 010439          205 IALWK  209 (510)
Q Consensus       205 ~~l~~  209 (510)
                      ..|+.
T Consensus       238 ~~Ll~  242 (256)
T 2etb_A          238 RHILQ  242 (256)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66553

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=2.8e-31  Score=239.93  Aligned_cols=167  Identities=23%  Similarity=0.255  Sum_probs=157.1

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           15 QSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        15 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      ..+.++||.|+..|+.++|++||++ +.+++..|..|.||||+|+.. |+.+++++|+++|++++..  |..|+||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-GRSAVVEMLIMRGARINVM--NRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence            4678999999999999999999998 678999999999999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010439           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~  173 (510)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||+ +|+..++.+++++
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~~~~  156 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVD-KAKAPLRELLRER  156 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGG-GSCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHH-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999  89999999999 9999999999999


Q ss_pred             HhhCCCCCCCCCcc
Q 010439          174 VIPCGTANPSKPLR  187 (510)
Q Consensus       174 Ll~~ga~~~~~~~~  187 (510)
                      |+++|++++..+..
T Consensus       157 L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          157 AEKMGQNLNRIPYK  170 (179)
T ss_dssp             HHHTTCCCSCBCCC
T ss_pred             HHHhhcCcccCCcc
Confidence            99999999876643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=8.4e-31  Score=245.00  Aligned_cols=169  Identities=22%  Similarity=0.209  Sum_probs=163.0

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      +.+++.++..|.||||+|+..|+.++|++|++++. +++..+..|.||||+|+.. ++.+++++|+++|++++..  |..
T Consensus        48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~  124 (223)
T 2f8y_A           48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAV--DDL  124 (223)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTT
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh-CcHHHHHHHHHcCCCCcCc--CCC
Confidence            56778889999999999999999999999999987 8999999999999999998 9999999999999999998  899


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~  165 (510)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~  201 (223)
T 2f8y_A          125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRD-IAQER  201 (223)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHH-HHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHHhhCCCCC
Q 010439          166 MSRKIWVVVIPCGTAN  181 (510)
Q Consensus       166 ~~~~~~~~Ll~~ga~~  181 (510)
                      ++.+++++|+++|+..
T Consensus       202 ~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          202 MHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             TCHHHHHHHHHTTCSS
T ss_pred             cchHHHHHHHHcCCCc
Confidence            9999999999999865

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3.4e-31  Score=236.87  Aligned_cols=138  Identities=33%  Similarity=0.468  Sum_probs=130.0

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      .++++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.. |+.+++++|+++|+++|.+  |..
T Consensus        26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gadvn~~--d~~  102 (169)
T 4gpm_A           26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSD  102 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCC
Confidence            3678899999999999999999999999999999999999999999999999998 9999999999999999998  899


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  146 (510)
                      |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       103 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          103 GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=4.7e-31  Score=234.98  Aligned_cols=160  Identities=24%  Similarity=0.241  Sum_probs=149.5

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHH
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh   91 (510)
                      .+.+|.|+||.|+..|+.++|+.|++ .+.+++..+..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY-NRVSVVEYLLQHGADVHAK--DKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCcc--CCCCCCHHH
Confidence            37789999999999999999999999 4567888889999999999998 9999999999999999998  889999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHH
Q 010439           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (510)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~  171 (510)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|.. ++.+++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~a~~-~~~~i~  156 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLD-LVKD-GDTDIQ  156 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGG-GSCT-TCHHHH
T ss_pred             HHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhH-hHhc-CChHHH
Confidence            9999999999999999999999999999999999999999999999999999999  89999999999 7766 899999


Q ss_pred             HHHhhCCC
Q 010439          172 VVVIPCGT  179 (510)
Q Consensus       172 ~~Ll~~ga  179 (510)
                      ++|+++|+
T Consensus       157 ~~L~~~gA  164 (165)
T 3twr_A          157 DLLRGDAA  164 (165)
T ss_dssp             HHHHTC--
T ss_pred             HHHhhccc
Confidence            99999886

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.3e-30  Score=229.17  Aligned_cols=152  Identities=24%  Similarity=0.257  Sum_probs=146.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~   95 (510)
                      +..|+||.|+..|+.++|++|+++|++++ .|..|.||||+|+.. |+.+++++|+++|++++..  |..|+||||+|+.
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   76 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAAS   76 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHH
T ss_pred             CccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHH
Confidence            35799999999999999999999999887 588999999999998 9999999999999999998  8899999999999


Q ss_pred             cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHH
Q 010439           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (510)
Q Consensus        96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~L  174 (510)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|
T Consensus        77 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999  89999999999 99999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.2e-31  Score=259.30  Aligned_cols=203  Identities=16%  Similarity=0.174  Sum_probs=171.6

Q ss_pred             cChhhhcCCchHHHHHHHHcCCHHHHHHHHH----cCCCCc----ccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCc
Q 010439            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLE----WMDKEGKTPLIVACMD--SGLINVAKTLIELGANI   77 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~d~~g~TpL~~A~~~--~~~~~~v~~Ll~~ga~~   77 (510)
                      ...+..|..|.|+||+|+..|+.++|+.||+    .+++++    ..|..|+||||+|+..  .|+.+++++|+++|+++
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            4456778999999999999999999988887    566665    4578999999999973  38899999999998653


Q ss_pred             -------cc--cCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCC--------------CCCcHHHHHHHcCCHHH
Q 010439           78 -------NA--YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND--------------DCHTALGVARIKGHINV  134 (510)
Q Consensus        78 -------n~--~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~--------------~g~TpL~~A~~~g~~~~  134 (510)
                             +.  .+.|..|+||||+|+..|+.++|++|+++|++++.++.              .|.||||+|+..|+.++
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                   22  22367899999999999999999999999999999987              79999999999999999


Q ss_pred             HHHHHh---ccccccccccccCCCCHHHHHhhhcCC---------HHHHHHHhhCCCCCC-------CCCcccccccccc
Q 010439          135 VRAIES---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTANP-------SKPLRFELVIYPS  195 (510)
Q Consensus       135 v~~Ll~---~ga~~~~~~~d~~g~t~L~~~A~~~~~---------~~~~~~Ll~~ga~~~-------~~~~~~~~~l~~a  195 (510)
                      |++|++   +|++++  .+|..|.|||| +|+..++         .+++++|+++|++++       .++..+.++++.+
T Consensus       164 v~~Ll~~~~~gad~~--~~d~~g~tpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          164 VKFLLQNSWQPADIS--ARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHhcccCCCCce--eeCCCCCcHHH-HHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            999999   899999  89999999999 8998888         799999999999986       4788999999999


Q ss_pred             ccccChHHHHHHHHhhcC
Q 010439          196 LQDVQPRAVIALWKAKID  213 (510)
Q Consensus       196 ~~~~~~~~i~~l~~~~~~  213 (510)
                      ...++...+..|+.....
T Consensus       241 ~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          241 ASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHTTCHHHHHHHHHHHTC
T ss_pred             HHhChHHHHHHHHHCCCC
Confidence            999998888877766653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=1.2e-30  Score=260.11  Aligned_cols=226  Identities=19%  Similarity=0.096  Sum_probs=192.0

Q ss_pred             ccChhhhcC-CchHHHHHHHHcCCHHHHHHHHHcCCCC---------------------------------cccCCCCCh
Q 010439            7 SMNQHQQRQ-SKDELLYQWVIAGDVDAIRALRSQGASL---------------------------------EWMDKEGKT   52 (510)
Q Consensus         7 ~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---------------------------------~~~d~~g~T   52 (510)
                      ++++|.++. .|.||||+|+..|+.++|++||++|+++                                 +..|..|.|
T Consensus        48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t  127 (337)
T 4g8k_A           48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT  127 (337)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred             CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence            567777765 5999999999999999999999998764                                 456778999


Q ss_pred             HHHHHHHhCCcHHHHHHHHHcCCCccccC--------CCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCCCCCCcHH
Q 010439           53 PLIVACMDSGLINVAKTLIELGANINAYR--------PGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTAL  123 (510)
Q Consensus        53 pL~~A~~~~~~~~~v~~Ll~~ga~~n~~~--------~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL  123 (510)
                      |||+|+.. |+.+++++|+++|++++..+        .+..|.||||+|+..|+.++|++||+ .|++++.+|..|.|+|
T Consensus       128 ~l~~A~~~-~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l  206 (337)
T 4g8k_A          128 AFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  206 (337)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             HHHHHHHc-CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHH
Confidence            99999998 99999999999999998652        14468999999999999999999995 6999999999999999


Q ss_pred             HHHHHcCC----HHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhC-CCCCCCCCccccccccccccc
Q 010439          124 GVARIKGH----INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQD  198 (510)
Q Consensus       124 ~~A~~~g~----~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~l~~a~~~  198 (510)
                      |+++..+.    ..++++|+++|++++  .+|..|.|||| +|+..++.+++++|+.. |++++.++..|.+|++.++..
T Consensus       207 ~~~~~~~~~~~~~~i~~lLl~~gad~n--~~d~~g~t~L~-~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          207 IHALLSSDDSDVEAITHLLLDHGADVN--VRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  283 (337)
T ss_dssp             HHHHHHSCTTTHHHHHHHHHHTTCCTT--CCCGGGCCHHH-HHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHHHHcCcccHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence            99887654    468999999999999  89999999999 99999999999999975 899999999999999999999


Q ss_pred             cChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCC-CChHHHHHH
Q 010439          199 VQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE-GDKHQLQWL  251 (510)
Q Consensus       199 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~-~~~~ql~~~  251 (510)
                      ++...+..|+..        |+++       +.+++|++|+.+. .+.++++.-
T Consensus       284 g~~~iv~~Ll~~--------GAd~-------n~~~~L~~A~~~~~~~iv~~Ll~  322 (337)
T 4g8k_A          284 KLKKIAELLCKR--------GAST-------DCGDLVMTARRNYDHSLVKVLLS  322 (337)
T ss_dssp             TCHHHHHHHHTT--------SCSS-------TTCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHC--------CCCC-------CCCCHHHHHHHcCCHHHHHHHHH
Confidence            998777765543        4452       2367999998543 344444433

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.6e-31  Score=255.70  Aligned_cols=169  Identities=18%  Similarity=0.111  Sum_probs=156.9

Q ss_pred             ccChhh----hcCCchHHHHHHHHc---CCHHHHHHHHHcCCCCccc-----------CCCCChHHHHHHHhCCcHHHHH
Q 010439            7 SMNQHQ----QRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAK   68 (510)
Q Consensus         7 ~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~-----------d~~g~TpL~~A~~~~~~~~~v~   68 (510)
                      +.+++.    +|..|.||||+|+..   |+.++|++|+++|++++..           |..|.||||+|+.. |+.++++
T Consensus        29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~  107 (256)
T 2etb_A           29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVK  107 (256)
T ss_dssp             TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHH
T ss_pred             CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc-CCHHHHH
Confidence            566666    799999999999999   9999999999999877633           36899999999998 9999999


Q ss_pred             HHHHcCCCccccCCCCC-------------CChHHHHHHHcCCHHHHHHHHH---CCCCCccCCCCCCcHHHHHHH--cC
Q 010439           69 TLIELGANINAYRPGGR-------------GGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARI--KG  130 (510)
Q Consensus        69 ~Ll~~ga~~n~~~~d~~-------------g~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~TpL~~A~~--~g  130 (510)
                      +|+++|++++..  +..             |+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .+
T Consensus       108 ~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~  185 (256)
T 2etb_A          108 LLVENGADVHLR--ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN  185 (256)
T ss_dssp             HHHHTTCCTTCC--CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             HHHHcCCCCCcc--cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccC
Confidence            999999999998  554             9999999999999999999999   999999999999999999999  88


Q ss_pred             CHH-------HHHHHHhccccc-------cccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCC
Q 010439          131 HIN-------VVRAIESHICYF-------CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (510)
Q Consensus       131 ~~~-------~v~~Ll~~ga~~-------~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~  181 (510)
                      +.+       ++++|+++|+++       +  .+|..|.|||| +|+..++.+++++|+++|++.
T Consensus       186 ~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          186 SPENSALVIHMYDGLLQMGARLCPTVQLEE--ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSTTCCGGG--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHcCCCccccccccc--ccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCC
Confidence            888       999999999999       7  89999999999 999999999999999998654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=245.52  Aligned_cols=199  Identities=19%  Similarity=0.210  Sum_probs=185.1

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      +.+.+.++..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+.. |+.+++++|+++|++++..  +..
T Consensus        32 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~  108 (240)
T 3eu9_A           32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADPSLI--DGE  108 (240)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred             CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc-CCHHHHHHHHHcCCCCccc--CCC
Confidence            46778889999999999999999999999999999988655 4599999999998 9999999999999999998  899


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCC-HHHHHHHHhcccccccccccc-CCCCHHHHHhh
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESHICYFCGWLREF-YGPSFLEALAP  163 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~-~~~v~~Ll~~ga~~~~~~~d~-~g~t~L~~~A~  163 (510)
                      |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++ .+++++|++.|++++  ..+. .|.|||| +|+
T Consensus       109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~--~~~~~~g~t~L~-~A~  185 (240)
T 3eu9_A          109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALH-WAV  185 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT--CCCTTTCCCHHH-HHH
T ss_pred             CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc--hhhccCCCcHHH-HHH
Confidence            9999999999999999999999999999999999999999997776 899999999999999  7776 8999999 999


Q ss_pred             hcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhh
Q 010439          164 QLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK  211 (510)
Q Consensus       164 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~  211 (510)
                      ..++.+++++|+++|++++.++..+.++++.+.+.++...+..+....
T Consensus       186 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          186 LAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            999999999999999999999999999999999999988887665443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.2e-31  Score=255.39  Aligned_cols=170  Identities=18%  Similarity=0.138  Sum_probs=151.3

Q ss_pred             hhcCCchHHHHHHHHc---CCHHHHHHHHHcCCCC-------cc----cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCc
Q 010439           12 QQRQSKDELLYQWVIA---GDVDAIRALRSQGASL-------EW----MDKEGKTPLIVACMDSGLINVAKTLIELGANI   77 (510)
Q Consensus        12 ~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-------~~----~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~   77 (510)
                      .++..|.||||+|+..   |+.++|++||++|+++       +.    .|..|.||||+|+.. |+.+++++|+++|+++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~ga~~  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RNMTLVTLLVENGADV  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc-CCHHHHHHHHHCCCCc
Confidence            3478999999999987   9999999999998653       22    567899999999998 9999999999999999


Q ss_pred             cccCCCC--------------CCChHHHHHHHcCCHHHHHHHHH---CCCCCccCCCCCCcHHHHHHHcCC---------
Q 010439           78 NAYRPGG--------------RGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------  131 (510)
Q Consensus        78 n~~~~d~--------------~g~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~TpL~~A~~~g~---------  131 (510)
                      +..  +.              .|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         
T Consensus       128 ~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~  205 (273)
T 2pnn_A          128 QAA--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV  205 (273)
T ss_dssp             TCC--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH
T ss_pred             Ccc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH
Confidence            998  54              79999999999999999999999   999999999999999999999998         


Q ss_pred             HHHHHHHHhccccccc-----cccccCCCCHHHHHhhhcCCHHHHHHHhhCCC-CCCCCC
Q 010439          132 INVVRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGT-ANPSKP  185 (510)
Q Consensus       132 ~~~v~~Ll~~ga~~~~-----~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga-~~~~~~  185 (510)
                      .+++++|+++|++++.     ..+|..|.|||| +|+..++.+++++|+++|+ |+...+
T Consensus       206 ~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~dp~~~~  264 (273)
T 2pnn_A          206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLA-LAASSGKIGVLAYILQREIHEPECRH  264 (273)
T ss_dssp             HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHhhhhcccccccccccCCCCCCHHH-HHHHhChHHHHHHHHHCCCCCchhhh
Confidence            8999999999999962     148999999999 9999999999999999999 554433

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=253.07  Aligned_cols=163  Identities=21%  Similarity=0.262  Sum_probs=154.0

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCChHHHHHH-----HhCCcHHHHHHHHHcCCCccccCCC
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVAC-----MDSGLINVAKTLIELGANINAYRPG   83 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~TpL~~A~-----~~~~~~~~v~~Ll~~ga~~n~~~~d   83 (510)
                      +|.+|.+|.||||+|+..|+.++|++||++|+ +++..|..|.||||+|+     .. ++.+++++|++.|++++..  +
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~--~  180 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKA--S  180 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCC--T
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCcccc--C
Confidence            67789999999999999999999999999998 99999999999999999     55 7899999999999998887  8


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHh-ccccccccccccCCCCHHHHHh
Q 010439           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALA  162 (510)
Q Consensus        84 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~g~t~L~~~A  162 (510)
                      ..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|++ .|++++  .+|..|.|||| +|
T Consensus       181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~-~A  257 (276)
T 4hbd_A          181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALM-VA  257 (276)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHH-HH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHH-HH
Confidence            899999999999999999999999999999999999999999999999999999999 899999  89999999999 99


Q ss_pred             hhcCCHHHHHHHhhCC
Q 010439          163 PQLMSRKIWVVVIPCG  178 (510)
Q Consensus       163 ~~~~~~~~~~~Ll~~g  178 (510)
                      +..++.+++++|++++
T Consensus       258 ~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          258 LDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHTCHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHhcc
Confidence            9999999999999875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=9.1e-31  Score=254.88  Aligned_cols=189  Identities=14%  Similarity=0.079  Sum_probs=169.0

Q ss_pred             cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC-
Q 010439            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG-   86 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g-   86 (510)
                      ++++.+  +|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  +..| 
T Consensus        55 ~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~  129 (285)
T 3kea_A           55 ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGW  129 (285)
T ss_dssp             GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGC--SSSGG
T ss_pred             CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCcc--CCCCC
Confidence            344444  599999999999999999999999999999999999999999998 9999999999999999998  8888 


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCH-HHHHhhhc
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQL  165 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~-L~~~A~~~  165 (510)
                      .||||+|+..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|| || +|+..
T Consensus       130 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~-~A~~~  205 (285)
T 3kea_A          130 KTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDN  205 (285)
T ss_dssp             GSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHH-HHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHH-HHHHc
Confidence            79999999999999999999999887322 289999999999999999999999999999  899999998 99 99999


Q ss_pred             CCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhc
Q 010439          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI  212 (510)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~  212 (510)
                      ++.+++++|+++|++++.++.       .+...++...+..++....
T Consensus       206 ~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~  245 (285)
T 3kea_A          206 KDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHV  245 (285)
T ss_dssp             TCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCC
Confidence            999999999999999998873       3345667777766665443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=5.3e-30  Score=225.80  Aligned_cols=154  Identities=27%  Similarity=0.322  Sum_probs=147.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~   94 (510)
                      .|.|+||+|+..|+.++|++|+++ +.+++..|..|.||||+ +.. |+.+++++|+++|++++.+  |..|+||||+|+
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~   76 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMF-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAA   76 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHc-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHH
Confidence            367999999999999999999998 34999999999999999 877 9999999999999999998  899999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHH
Q 010439           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (510)
Q Consensus        95 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~L  174 (510)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++  .+|..|.|||| +|+..++.+++++|
T Consensus        77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~-~A~~~~~~~~v~~L  152 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLE-LALQRGAQDLVDIL  152 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHH-HHHHSCCHHHHHHH
T ss_pred             HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHH-HHHHcCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 9998  89999999999 99999999999999


Q ss_pred             hhC
Q 010439          175 IPC  177 (510)
Q Consensus       175 l~~  177 (510)
                      +++
T Consensus       153 l~~  155 (156)
T 1bd8_A          153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=7.8e-31  Score=260.48  Aligned_cols=178  Identities=13%  Similarity=0.079  Sum_probs=152.3

Q ss_pred             ccChhh-hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCc---HHHHHHHHHcC-CCccccC
Q 010439            7 SMNQHQ-QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL---INVAKTLIELG-ANINAYR   81 (510)
Q Consensus         7 ~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~---~~~v~~Ll~~g-a~~n~~~   81 (510)
                      +++++. +|..|.||||+|+..|+.++|++||++|++++.+|..|+||||+|+.. |+   .++++.|++++ ++++.+ 
T Consensus       120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~-  197 (327)
T 1sw6_A          120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYPCLILE-  197 (327)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEE-
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh-cccccHHHHHHHHHhhhccccCC-
Confidence            467788 899999999999999999999999999999999999999999999997 77   68888888887 789988 


Q ss_pred             CCCCCChHHHHHHH----cCCHHHHHHHHHC--------------------CCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 010439           82 PGGRGGTPLHHAAK----RGLEPTVRLLLSC--------------------GANALVRNDDCHTALGVARIKGHINVVRA  137 (510)
Q Consensus        82 ~d~~g~TpLh~A~~----~g~~~~v~~Ll~~--------------------gad~~~~d~~g~TpL~~A~~~g~~~~v~~  137 (510)
                       |..|+||||+|+.    .|+.+++++|++.                    |++++.++..|.||||+|+.      +++
T Consensus       198 -d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~  270 (327)
T 1sw6_A          198 -DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKW  270 (327)
T ss_dssp             -CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHH
T ss_pred             -CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHH
Confidence             8999999999999    8999999999987                    89999999999999999985      889


Q ss_pred             HHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccc
Q 010439          138 IESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (510)
Q Consensus       138 Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~  198 (510)
                      |+++  +++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.+|++.+++.
T Consensus       271 Ll~~--~~n--~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          271 IIAN--MLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHH--TTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHHh--CCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            9988  577  78999999999 99999999999999999999999999999999998764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=8e-31  Score=251.37  Aligned_cols=193  Identities=16%  Similarity=0.119  Sum_probs=151.9

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHH----HcCCCCcccC----CCCChHHHHHH---HhCCcHHHHHHHHHcCCCc-----
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALR----SQGASLEWMD----KEGKTPLIVAC---MDSGLINVAKTLIELGANI-----   77 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~d----~~g~TpL~~A~---~~~~~~~~v~~Ll~~ga~~-----   77 (510)
                      +..|+|+||.|++.|+.+.|+.|+    ++|++++..+    ..|.||||+|+   .. |+.+++++|++.|+++     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchHh
Confidence            456788888888888888544444    4888887665    66888888888   44 8888888888887542     


Q ss_pred             ----cccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCC--------------CCCCcHHHHHHHcCCHHHHHHHH
Q 010439           78 ----NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIE  139 (510)
Q Consensus        78 ----n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d--------------~~g~TpL~~A~~~g~~~~v~~Ll  139 (510)
                          +..+.|..|+||||+|+..|+.++|++|+++|++++.++              ..|.||||+|+..|+.++|++|+
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                222225578888888888888888888888888888888              57888888888888888888888


Q ss_pred             h---ccccccccccccCCCCHHHHHhhhcCC---------HHHHHHHhhCCCCC-------CCCCccccccccccccccC
Q 010439          140 S---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQ  200 (510)
Q Consensus       140 ~---~ga~~~~~~~d~~g~t~L~~~A~~~~~---------~~~~~~Ll~~ga~~-------~~~~~~~~~~l~~a~~~~~  200 (510)
                      +   +|++++  .+|..|.|||| +|+..++         .+++++|+++|+++       +.++..+.+|++.++..++
T Consensus       161 ~~~~~ga~~~--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          161 ENGHKQADLR--RQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             hccccCCCCc--ccCCCCCcHHH-HHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            8   888888  78888888888 7887666         68888888888887       5678888888888888888


Q ss_pred             hHHHHHHHHh
Q 010439          201 PRAVIALWKA  210 (510)
Q Consensus       201 ~~~i~~l~~~  210 (510)
                      ...+..|+..
T Consensus       238 ~~~v~~Ll~~  247 (260)
T 3jxi_A          238 IGIFQHIIRR  247 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777766543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.8e-30  Score=248.89  Aligned_cols=163  Identities=20%  Similarity=0.119  Sum_probs=149.8

Q ss_pred             CCchHHHHHHH---HcCCHHHHHHHHHcCCC-----------CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCcccc
Q 010439           15 QSKDELLYQWV---IAGDVDAIRALRSQGAS-----------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY   80 (510)
Q Consensus        15 ~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~-----------~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~   80 (510)
                      ..|.||||+|+   ..|+.++|++|++.|++           ++..|..|+||||+|+.. |+.+++++|+++|++++..
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~  122 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHAQ  122 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT-TCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc-CCHHHHHHHHhCCCCcCcc
Confidence            77999999999   67999999999998744           445566899999999998 9999999999999999998


Q ss_pred             CCC--------------CCCChHHHHHHHcCCHHHHHHHHH---CCCCCccCCCCCCcHHHHHHHcCC---------HHH
Q 010439           81 RPG--------------GRGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------INV  134 (510)
Q Consensus        81 ~~d--------------~~g~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~TpL~~A~~~g~---------~~~  134 (510)
                        +              ..|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..++         .++
T Consensus       123 --~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~  200 (260)
T 3jxi_A          123 --ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM  200 (260)
T ss_dssp             --CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             --ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence              5              689999999999999999999999   999999999999999999999888         799


Q ss_pred             HHHHHhccccccc-----cccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCC
Q 010439          135 VRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (510)
Q Consensus       135 v~~Ll~~ga~~~~-----~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~  181 (510)
                      +++|+++|++++.     +.+|..|.|||| +|+..|+.+++++|+++|++.
T Consensus       201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcccccccchhhcccCCCCCHHH-HHHHcCCHHHHHHHHHhCCCc
Confidence            9999999999931     179999999999 999999999999999998754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=3.6e-30  Score=242.32  Aligned_cols=192  Identities=13%  Similarity=0.045  Sum_probs=139.7

Q ss_pred             HHHHHHcCCCCcccC---CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 010439           33 IRALRSQGASLEWMD---KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG  109 (510)
Q Consensus        33 v~~Ll~~g~~~~~~d---~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  109 (510)
                      |+.||++|++++..+   ..|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.+++++|+++|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALT-GELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHH-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHc-CCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            466777777765543   4566778888887 7888888888888888877  778888888888888888888888888


Q ss_pred             CCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccc-cCCCCHHHHHh--hhcCCHHHHHHHhhCCCCCCCCCc
Q 010439          110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCGTANPSKPL  186 (510)
Q Consensus       110 ad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~t~L~~~A--~~~~~~~~~~~Ll~~ga~~~~~~~  186 (510)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++++  .++ ..|.|||| +|  +..++.+++++|+++|++++.++.
T Consensus        78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~-~A~a~~~~~~~~v~~Ll~~ga~~~~~~~  154 (229)
T 2vge_A           78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATAFE-KCDPYREGYADCATYLADVEQSMGLMNS  154 (229)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCSSTTCCTGG-GCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHhcChHHHHHHHHHcCCCcccccC
Confidence            8888888888888888888888888888888888887  554 57888888 77  778888888888888888887777


Q ss_pred             cccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcC
Q 010439          187 RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (510)
Q Consensus       187 ~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~  241 (510)
                      .+.++++.......           .+.+...+.+..++..|..|.|||++|+..
T Consensus       155 ~~~~~l~~~~~~~~-----------~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~  198 (229)
T 2vge_A          155 GAVYALWDYSAEFG-----------DELSFREGESVTVLRRDGPEETDWWWAALH  198 (229)
T ss_dssp             GEEEESSCBCCSST-----------TBCCBCTTCEEEEEESSCTTCSSEEEEEET
T ss_pred             CchHHHHHHhhccc-----------cccCccccccccccccCCCcccHHHHHHHc
Confidence            77777765544332           134455566666788899999999999843

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.4e-30  Score=246.81  Aligned_cols=172  Identities=12%  Similarity=0.031  Sum_probs=127.7

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      +..|.||||.|+..|+.++++.||++|++++.. ..|.||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNA   77 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence            457999999999999999999999999999864 7899999999998 9999999999999999998  89999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCC-CHHHHHh--hhcCCHHH
Q 010439           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP-SFLEALA--PQLMSRKI  170 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~-t~L~~~A--~~~~~~~~  170 (510)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .++..|. |||| +|  +..++.++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~-~a~~~~~g~~~~  154 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQC  154 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHH-HHHHhhhccHHH
Confidence            99999999999999999999999999999999999999999999999999999  8888777 9999 88  78899999


Q ss_pred             HHHHhhCCCCCCCCCccccccc
Q 010439          171 WVVVIPCGTANPSKPLRFELVI  192 (510)
Q Consensus       171 ~~~Ll~~ga~~~~~~~~~~~~l  192 (510)
                      +++|+++|++++..+..+..++
T Consensus       155 ~~~Ll~~~a~~~~~~~~~~~al  176 (239)
T 1ycs_B          155 SQFLYGVQEKMGIMNKGVIYAL  176 (239)
T ss_dssp             HHHHHHHHHHTTTTGGGEEEES
T ss_pred             HHHHHHhhhcccccccceEEEE
Confidence            9999999999987754443443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.1e-31  Score=252.79  Aligned_cols=186  Identities=19%  Similarity=0.079  Sum_probs=169.4

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHH
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpL   90 (510)
                      +..+.+|.|+||+|+..|+.++|++|+++|+++|.+|..|+||||+|+.. |+.+++++|+++|+++|.+  |..|+|||
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~n~~--d~~g~tpL   91 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSP--DSHGWTPL   91 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCHH
Confidence            45577899999999999999999999999999999999999999999998 9999999999999999998  88999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCccCC-CCCCcHHHHH--HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCC
Q 010439           91 HHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVA--RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (510)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A--~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~  167 (510)
                      |+|+..|+.+++++|+++|++++.++ ..|+||||+|  +..|+.+++++|+++|++++  .+|..|.|+++ .++... 
T Consensus        92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~~l~-~~~~~~-  167 (229)
T 2vge_A           92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG--LMNSGAVYALW-DYSAEF-  167 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT--TSGGGEEEESS-CBCCSS-
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc--cccCCchHHHH-HHhhcc-
Confidence            99999999999999999999999997 6999999999  99999999999999999999  89999999999 444433 


Q ss_pred             HHHHHHHhhCCCC--CCCCCccccccccccccccChHHHH
Q 010439          168 RKIWVVVIPCGTA--NPSKPLRFELVIYPSLQDVQPRAVI  205 (510)
Q Consensus       168 ~~~~~~Ll~~ga~--~~~~~~~~~~~l~~a~~~~~~~~i~  205 (510)
                        ..++|++.|++  ++.++..|.++++++...++...+.
T Consensus       168 --~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          168 --GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             --TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             --ccccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence              33688899998  6788889999999999888754443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=1e-28  Score=241.53  Aligned_cols=165  Identities=24%  Similarity=0.315  Sum_probs=149.5

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCC----
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----   82 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~----   82 (510)
                      +.+++.++.+|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. |+.+++++|+++|++++..+.    
T Consensus        63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~g~t  141 (299)
T 1s70_B           63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNSEGDT  141 (299)
T ss_dssp             CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            567788899999999999999999999999999999999999999999999998 999999999999999987621    


Q ss_pred             ------------------------------------------------------CCCCChHHHHHHHcCCHHHHHHHHHC
Q 010439           83 ------------------------------------------------------GGRGGTPLHHAAKRGLEPTVRLLLSC  108 (510)
Q Consensus        83 ------------------------------------------------------d~~g~TpLh~A~~~g~~~~v~~Ll~~  108 (510)
                                                                            +..|.||||+|+..|+.+++++|+++
T Consensus       142 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  221 (299)
T 1s70_B          142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (299)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence                                                                  23578999999999999999999999


Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439          109 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (510)
Q Consensus       109 gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll  175 (510)
                      |++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|.......+.+++-
T Consensus       222 g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~t~l~-~A~~~~~~~l~~l~~  285 (299)
T 1s70_B          222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--AVNKVGQTAFD-VADEDILGYLEELQK  285 (299)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTTT-SCCSGGGHHHHHHHH
T ss_pred             CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999  89999999999 887654444444333

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.3e-29  Score=245.55  Aligned_cols=189  Identities=16%  Similarity=0.134  Sum_probs=176.6

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CccccCCCCCCChHHH
Q 010439           15 QSKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPLH   91 (510)
Q Consensus        15 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga-~~n~~~~d~~g~TpLh   91 (510)
                      ..+.+++|.|+..|+++.++.|++.+.+  +|.+|.+|+||||+|+.. |+.+++++|++.|+ +++..  |..|+||||
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~~g~tpL~  150 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH-ANFPVVQQLLDSGVCKVDKQ--NRAGYSPIM  150 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTSCCCTTCC--CTTSCCHHH
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC-CCHHHHHHHHHCCCCcCCCC--CCCCCCHHH
Confidence            3456788999999999999999998766  889999999999999998 99999999999998 99988  899999999


Q ss_pred             HHH-----HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439           92 HAA-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (510)
Q Consensus        92 ~A~-----~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~  166 (510)
                      +|+     ..++.+++++|++.|.+++..+..|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+..+
T Consensus       151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh-~A~~~g  227 (276)
T 4hbd_A          151 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALM-CACEHG  227 (276)
T ss_dssp             HGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHT
T ss_pred             HHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHCC
Confidence            999     6689999999999999999999999999999999999999999999999999  89999999999 999999


Q ss_pred             CHHHHHHHhh-CCCCCCCCCccccccccccccccChHHHHHHHH
Q 010439          167 SRKIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIALWK  209 (510)
Q Consensus       167 ~~~~~~~Ll~-~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~  209 (510)
                      +.+++++|++ .|++++.++..+.+|++.+...++...+..|+.
T Consensus       228 ~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          228 HKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             CHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999 899999999999999999999998887776553

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=4.2e-29  Score=220.37  Aligned_cols=143  Identities=25%  Similarity=0.240  Sum_probs=120.4

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCCh-H
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT-P   89 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~T-p   89 (510)
                      ...+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+ . |+.+++++|+++|++++.+  |..|+| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~--d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c-CCHHHHHHHHHcCCCCCCc--CCCCCcHH
Confidence            345788999999999999999999999999999999999999999985 5 9999999999999999998  889999 9


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHH
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE  159 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~  159 (510)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .++..|.||.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~~~  149 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--GSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC--ccCcCcCcccc
Confidence            999999999999999999999999999999999999999999999999999999999  89999999987

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=7.3e-29  Score=213.55  Aligned_cols=133  Identities=26%  Similarity=0.309  Sum_probs=98.3

Q ss_pred             cChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC-C
Q 010439            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR-G   86 (510)
Q Consensus         8 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~-g   86 (510)
                      .+++.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.  ++.+++++|+++|++++.+  |.. |
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~~g   78 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNCA--DPATL   78 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT--SCHHHHHHHHHHTCCSSCC--BTTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc--CCHHHHHHHHHCCCCCCCc--CCCCC
Confidence            4556667777777777777777777777777777777777777777777775  6677777777777777776  666 7


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  144 (510)
                      +||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7777777777777777777777777777777777777777777777777777777764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=3.1e-29  Score=248.98  Aligned_cols=199  Identities=15%  Similarity=-0.013  Sum_probs=164.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcC
Q 010439           19 ELLYQWVIAGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (510)
Q Consensus        19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g   97 (510)
                      +.+|+|+..+..+++++|++.|+++|. +|..|+||||+||.. |+.++|++||++|++++.+  |..|+||||+|+..|
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSV  175 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSS
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhc
Confidence            446888888889999999999999999 899999999999998 9999999999999999998  899999999999999


Q ss_pred             C---HHHHHHHHHCC-CCCccCCCCCCcHHHHHHH----cCCHHHHHHHHhc--------------------cccccccc
Q 010439           98 L---EPTVRLLLSCG-ANALVRNDDCHTALGVARI----KGHINVVRAIESH--------------------ICYFCGWL  149 (510)
Q Consensus        98 ~---~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~~  149 (510)
                      +   .++++.|++.+ ++++.+|..|+||||+|+.    .|+.+++++|++.                    |++++  .
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~--~  253 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN--D  253 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc--c
Confidence            8   78888888886 7899999999999999999    8999999999988                    78888  8


Q ss_pred             cccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecC
Q 010439          150 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ  229 (510)
Q Consensus       150 ~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~  229 (510)
                      ++..|.|||| +|+.      +++|+++  +++.++..+.+|++.++..++...+..|+..        +++  +++.|.
T Consensus       254 ~~~~g~t~L~-~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--------Gad--~~~~d~  314 (327)
T 1sw6_A          254 KNGERKDSIL-ENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDY--------GAD--PFIANK  314 (327)
T ss_dssp             ------CHHH-HHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT--------TCC--TTCCCT
T ss_pred             ccccCCChhH-HHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--------CCC--CcccCC
Confidence            9999999999 7775      8889988  5888899999999999999998777765543        456  778899


Q ss_pred             CCcceeeehhcC
Q 010439          230 ATKIRYKFASAN  241 (510)
Q Consensus       230 ~~~t~l~~a~~~  241 (510)
                      .|+|||++|+.+
T Consensus       315 ~G~TpL~~A~~~  326 (327)
T 1sw6_A          315 SGLRPVDFGAGL  326 (327)
T ss_dssp             TSCCGGGGTCC-
T ss_pred             CCCCHHHHHHhc
Confidence            999999999753

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=4.7e-28  Score=217.02  Aligned_cols=143  Identities=25%  Similarity=0.296  Sum_probs=132.2

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp   89 (510)
                      .+.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.+  |..|+||
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~  105 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIY--DWNGGTP  105 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            567789999999999999999999999999999999999999999999998 9999999999999999998  8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCH
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF  157 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~  157 (510)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++.  .++..|.||
T Consensus       106 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~--~~~~~~~~p  171 (172)
T 3v30_A          106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF--QSNLVPADP  171 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS--CC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh--cccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999998  788888876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=5.5e-28  Score=220.72  Aligned_cols=160  Identities=21%  Similarity=0.151  Sum_probs=152.7

Q ss_pred             CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcH
Q 010439           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTA  122 (510)
Q Consensus        43 ~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp  122 (510)
                      +|.+|..|+||||+|+.. |+.+++++|+++|++++..  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        28 ~n~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACML-GMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP  104 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHH-TCGGGHHHHHHHHCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             HhCcCCCCCCHHHHHHHc-CCHHHHHHHHHhccccccc--cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            466899999999999998 9999999999999999988  8899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChH
Q 010439          123 LGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR  202 (510)
Q Consensus       123 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~  202 (510)
                      ||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.+|++.+...++..
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence            999999999999999999999999  89999999999 999999999999999999999999999999999999988877


Q ss_pred             HHHHHH
Q 010439          203 AVIALW  208 (510)
Q Consensus       203 ~i~~l~  208 (510)
                      .+..++
T Consensus       182 ~v~~Ll  187 (192)
T 2rfm_A          182 VIKIFT  187 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.8e-28  Score=209.01  Aligned_cols=134  Identities=18%  Similarity=0.225  Sum_probs=129.9

Q ss_pred             CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCC-
Q 010439           40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-  118 (510)
Q Consensus        40 g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-  118 (510)
                      +++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+. |+.+++++|+++|++++.+|.. 
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~   77 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAAR-GQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT   77 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred             CCCccCCCCCCccHHHHHHHc-CCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence            578999999999999999998 9999999999999999998  8999999999999 9999999999999999999999 


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCC
Q 010439          119 CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (510)
Q Consensus       119 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~  180 (510)
                      |+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|+|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVD-LAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHH-HHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999  89999999999 99999999999999999985

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=5.3e-29  Score=226.32  Aligned_cols=161  Identities=15%  Similarity=0.059  Sum_probs=144.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHhCCcH----HHHHHHHHcCCCccccCCCCCCChHH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRPGGRGGTPL   90 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A~~~~~~~----~~v~~Ll~~ga~~n~~~~d~~g~TpL   90 (510)
                      .+.++||.|++.|+++.++.++..+.  +.++ ..|+||||+|+.+ ++.    +++++||++|+++|.+  |..|+|||
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~-~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpL   79 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRN-NNDEARYKISMFLINKGADIKSR--TKEGTTLF   79 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTC-SCHHHHHHHHHHHHHTTCCSSCC--CTTCCCTH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHc-CCcchHHHHHHHHHHCCCCCCCC--CCCCCcHH
Confidence            35689999999999999999999875  4455 7899999999987 654    5999999999999998  89999999


Q ss_pred             HHHHHcCC------HHHHHHHHHCCCCCccCCCCCC-cHHHHHHHcC-----CHHHHHHHHh-ccccccccccccCCCCH
Q 010439           91 HHAAKRGL------EPTVRLLLSCGANALVRNDDCH-TALGVARIKG-----HINVVRAIES-HICYFCGWLREFYGPSF  157 (510)
Q Consensus        91 h~A~~~g~------~~~v~~Ll~~gad~~~~d~~g~-TpL~~A~~~g-----~~~~v~~Ll~-~ga~~~~~~~d~~g~t~  157 (510)
                      |+|+..++      .+++++|+++|+|++.+|..|+ ||||+|+..+     +.+++++|++ +|++++  .+|..|.||
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~Tp  157 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTA  157 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCH
Confidence            99999987      6889999999999999999999 9999999944     4679999999 999999  999999999


Q ss_pred             HHHHhhhcCCHHHHHHHhhCCCCCCCC
Q 010439          158 LEALAPQLMSRKIWVVVIPCGTANPSK  184 (510)
Q Consensus       158 L~~~A~~~~~~~~~~~Ll~~ga~~~~~  184 (510)
                      || +|+..++.+++++|+++..+.+.+
T Consensus       158 L~-~A~~~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          158 LE-FVKRCQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             HH-HHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred             HH-HHHHcCCHHHHHHHHHHHHHHhcc
Confidence            99 999999999999999776544443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=4.3e-27  Score=202.44  Aligned_cols=127  Identities=28%  Similarity=0.360  Sum_probs=119.6

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHH
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~   92 (510)
                      ....|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++..  |..|+||||+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~   86 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAV--DAIGFTPLHL   86 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHH
Confidence            356789999999999999999999999999999999999999999998 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcc
Q 010439           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (510)
Q Consensus        93 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  142 (510)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=4.3e-27  Score=208.39  Aligned_cols=135  Identities=28%  Similarity=0.348  Sum_probs=127.9

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      .+.+.+.++..|.||||+|+. |+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..
T Consensus        27 ~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~  102 (162)
T 1ihb_A           27 NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIE--DNE  102 (162)
T ss_dssp             SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTT
T ss_pred             CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCC
Confidence            356778889999999999999 999999999999999999999999999999998 9999999999999999998  899


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGAN-ALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  144 (510)
                      |+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       103 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999998 699999999999999999999999999999985

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=9.9e-27  Score=207.30  Aligned_cols=155  Identities=19%  Similarity=0.087  Sum_probs=148.2

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (510)
Q Consensus        49 ~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~  128 (510)
                      .|.||||+|+.. |+.+++++|++.|++++..  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHT-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHC-CCHHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            589999999998 9999999999999999998  8999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (510)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~  208 (510)
                      .|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+..+.
T Consensus        79 ~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVN--EYDWNGGTPLL-YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999999999  89999999999 999999999999999999999999999999999999998887776655


Q ss_pred             H
Q 010439          209 K  209 (510)
Q Consensus       209 ~  209 (510)
                      .
T Consensus       156 ~  156 (167)
T 3v31_A          156 S  156 (167)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.2e-26  Score=196.05  Aligned_cols=126  Identities=34%  Similarity=0.514  Sum_probs=116.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~   95 (510)
                      +|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.+  |..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCcHHHHHHH
Confidence            588999999999999999999999999999999999999999998 8899999999999999988  8889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc
Q 010439           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (510)
Q Consensus        96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  144 (510)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.6e-26  Score=206.55  Aligned_cols=155  Identities=23%  Similarity=0.227  Sum_probs=146.2

Q ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q 010439           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  126 (510)
Q Consensus        47 d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A  126 (510)
                      ...+.|+||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        11 ~~~~~~~l~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARA-GRDDEVRILMANGADVNAE--DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            45678999999998 9999999999999999988  88999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHH
Q 010439          127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA  206 (510)
Q Consensus       127 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~  206 (510)
                      +..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+..
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  164 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVN--ANDMEGHTPLH-LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI  164 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence            99999999999999999999  89999999999 9999999999999999999999999999999999998888766654


Q ss_pred             H
Q 010439          207 L  207 (510)
Q Consensus       207 l  207 (510)
                      +
T Consensus       165 L  165 (169)
T 2y1l_E          165 L  165 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=6.3e-27  Score=206.37  Aligned_cols=144  Identities=19%  Similarity=0.160  Sum_probs=121.0

Q ss_pred             CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCc-
Q 010439           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT-  121 (510)
Q Consensus        43 ~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~T-  121 (510)
                      .+..+..|.||||+|+.. |+.+++++|+++|++++..  |..|+||||+|+ .|+.+++++|+++|++++.+|..|+| 
T Consensus         5 ~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~tt   80 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTR   80 (156)
T ss_dssp             -----CCSTTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCC
T ss_pred             ccCCCccchHHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            345678899999999998 9999999999999999998  889999999985 99999999999999999999999999 


Q ss_pred             HHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccccccc
Q 010439          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY  193 (510)
Q Consensus       122 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~  193 (510)
                      |||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++..
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            9999999999999999999999999  89999999999 999999999999999999999998877766554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=3.3e-26  Score=200.90  Aligned_cols=149  Identities=21%  Similarity=0.213  Sum_probs=141.5

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHc
Q 010439           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK  129 (510)
Q Consensus        50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~  129 (510)
                      ..|+||+|+.. |+.+++++|+++|++++.   +..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~-g~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARA-GQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHH-TCHHHHHHHHHHTCCCCC---CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHc-CCHHHHHHHHHcCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            46899999998 999999999999998873   78999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439          130 GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (510)
Q Consensus       130 g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~  205 (510)
                      |+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+...++...+.
T Consensus        78 ~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  150 (153)
T 1awc_B           78 GHANIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             TCHHHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ChHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999  89999999999 999999999999999999999999999999999999888866554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=1.8e-25  Score=201.66  Aligned_cols=158  Identities=18%  Similarity=0.129  Sum_probs=143.7

Q ss_pred             CCCChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q 010439           48 KEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  126 (510)
Q Consensus        48 ~~g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A  126 (510)
                      ..+.++||.||.. |+.+++++|++. +.+++..  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         3 ~~~~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCRE-GNAVAVRLWLDNTENDLNQG--DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHH-TCHHHHHHHHHCTTSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHhcCccccccc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            4578999999998 999999999998 6788887  89999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHH
Q 010439          127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA  206 (510)
Q Consensus       127 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~  206 (510)
                      +..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+........+..
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~  156 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADIN--AVNEHGNVPLH-YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER  156 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999  89999999999 9999999999999999999999999999999999988777655555


Q ss_pred             HHHhh
Q 010439          207 LWKAK  211 (510)
Q Consensus       207 l~~~~  211 (510)
                      +....
T Consensus       157 L~~~g  161 (179)
T 3f6q_A          157 AEKMG  161 (179)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            44433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=1.2e-25  Score=199.91  Aligned_cols=153  Identities=20%  Similarity=0.180  Sum_probs=140.1

Q ss_pred             cCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHH
Q 010439           46 MDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (510)
Q Consensus        46 ~d~~g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~  124 (510)
                      .|.+|.|+||+|+.. |+.++++.|++. +.+++..  +..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus         4 ~~~~~~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKA-GDVETVKKLCTVQSVNCRDI--EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHH-TCHHHHHHHCCTTTTTCCCT--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CcchhhHHHHHHHHh-CCHHHHHHHHHcCCCCcccc--ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence            467899999999998 999999999984 5566665  888999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHH
Q 010439          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  204 (510)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i  204 (510)
                      +|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++.++..+.++++.+.+ ++...+
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~  156 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVVN--VADLWKFTPLH-EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQ  156 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHH
T ss_pred             HHHHcCcHHHHHHHHhCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHH
Confidence            9999999999999999999999  89999999999 9999999999999999999999999999999999776 554443


Q ss_pred             H
Q 010439          205 I  205 (510)
Q Consensus       205 ~  205 (510)
                      .
T Consensus       157 ~  157 (165)
T 3twr_A          157 D  157 (165)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1.5e-26  Score=219.08  Aligned_cols=148  Identities=21%  Similarity=0.196  Sum_probs=134.7

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      +..|.|+||+|+..|+.++|++||++|+++|.+|..|.||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~tpL~~A  110 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCA  110 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence            46789999999999999999999999999999999999999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCccCCCCCC-cHHHHH--HHcCCHHHHHHHHhcccccccccc---------ccCCCCHHHHH
Q 010439           94 AKRGLEPTVRLLLSCGANALVRNDDCH-TALGVA--RIKGHINVVRAIESHICYFCGWLR---------EFYGPSFLEAL  161 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~-TpL~~A--~~~g~~~~v~~Ll~~ga~~~~~~~---------d~~g~t~L~~~  161 (510)
                      +..|+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|+++|++++  ..         +..+.++++ +
T Consensus       111 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~--~~~~~~~~al~d~~~~~~~e-L  187 (239)
T 1ycs_B          111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGVIYALWDYEPQNDDE-L  187 (239)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT--TTGGGEEEESSCBCCSSTTB-C
T ss_pred             HHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc--ccccceEEEEeccCCCCCCc-c
Confidence            999999999999999999999998887 999999  78899999999999999887  44         556777777 6


Q ss_pred             hhhcCC
Q 010439          162 APQLMS  167 (510)
Q Consensus       162 A~~~~~  167 (510)
                      +...|.
T Consensus       188 a~~~G~  193 (239)
T 1ycs_B          188 PMKEGD  193 (239)
T ss_dssp             CBCSSC
T ss_pred             cccCCC
Confidence            666554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=7e-27  Score=201.25  Aligned_cols=123  Identities=29%  Similarity=0.347  Sum_probs=59.6

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      |.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A   83 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTT--GYQNDSPLHDA   83 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CGGGCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCcccCc--CCCCCCHHHHH
Confidence            44444555555554555555555544444444444444555554444 4444455444444444444  44444444444


Q ss_pred             HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 010439           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  139 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  139 (510)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|.
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            4444444444444444444444444444444444444444444443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=2.5e-25  Score=187.76  Aligned_cols=126  Identities=32%  Similarity=0.465  Sum_probs=122.6

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (510)
Q Consensus        49 ~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~  128 (510)
                      +|+||||+|+.. |+.+++++|+++|++++..  +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            589999999998 9999999999999999988  8899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCC
Q 010439          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (510)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~  180 (510)
                      .|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|+|
T Consensus        78 ~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999  89999999999 99999999999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=3.9e-26  Score=196.54  Aligned_cols=133  Identities=22%  Similarity=0.263  Sum_probs=120.9

Q ss_pred             CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCC
Q 010439           40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC  119 (510)
Q Consensus        40 g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g  119 (510)
                      |+|+ .+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g   76 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIK-GDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN   76 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred             CCCC-CcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence            5677 7889999999999998 9999999999999999998  8999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCC
Q 010439          120 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT  179 (510)
Q Consensus       120 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga  179 (510)
                      +||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..+..+++++|.+.+.
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           77 DSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVD-YTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GCCCHHHHHHHSCC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhhccHHHHHhhcccccc
Confidence            999999999999999999999999999  89999999999 9999999999887776654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.7e-25  Score=192.38  Aligned_cols=126  Identities=21%  Similarity=0.242  Sum_probs=120.6

Q ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q 010439           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  126 (510)
Q Consensus        47 d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A  126 (510)
                      ...|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARA-GQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHh-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            45689999999998 9999999999999999998  89999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCC
Q 010439          127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (510)
Q Consensus       127 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~g  178 (510)
                      +..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVN--AQDKFGKTAFD-ISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999  89999999999 999999999999999876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.4e-25  Score=203.29  Aligned_cols=143  Identities=21%  Similarity=0.178  Sum_probs=131.8

Q ss_pred             hhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHH
Q 010439           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (510)
Q Consensus        12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh   91 (510)
                      ..+..|.||||+|+..|+.++|+.||+ |+++|.+|..|+||||+|+.. |+.+++++|+++|+++|.++ +..|+||||
T Consensus        39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~-~~~g~tpL~  115 (183)
T 3deo_A           39 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSSCCHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHH
Confidence            446789999999999999999999999 999999999999999999998 99999999999999999882 388999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHH
Q 010439           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (510)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~  171 (510)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..+                   ....+.++|+ +|+..++.+++
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~-------------------~~~~~~~~l~-~a~~~~~~~i~  175 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-------------------KTTPKGNPMQ-FGRRIGLEKVI  175 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH-------------------HTCCCCSHHH-HHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc-------------------cCcccccHHH-HHHHcCHHHHH
Confidence            999999999999999999999999999999999998742                   2245789999 99999999999


Q ss_pred             HHHhhC
Q 010439          172 VVVIPC  177 (510)
Q Consensus       172 ~~Ll~~  177 (510)
                      ++|.++
T Consensus       176 ~~L~~~  181 (183)
T 3deo_A          176 NVLEGQ  181 (183)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            999765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=7.9e-26  Score=214.78  Aligned_cols=146  Identities=21%  Similarity=0.181  Sum_probs=134.3

Q ss_pred             hhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHH
Q 010439           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (510)
Q Consensus        12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh   91 (510)
                      ..+.+|.||||+|+..|+.++|++||+ |+++|.+|..|+||||+|+.. |+.+++++|+++|+++|.++ +..|+||||
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~-~~~g~t~L~  116 (244)
T 3ui2_A           40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSCCCHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHH
Confidence            345689999999999999999999999 999999999999999999998 99999999999999999982 388999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHH
Q 010439           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (510)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~  171 (510)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..                   .....+.|||| +|+..|+.+++
T Consensus       117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-------------------~~~~~~~~~l~-~a~~~g~~~iv  176 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-------------------LKTTPKGNPMQ-FGRRIGLEKVI  176 (244)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-------------------HTTCCCSSHHH-HHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-------------------HhccCCCCHHH-HHHHcChHHHH
Confidence            99999999999999999999999999999999999862                   23457899999 99999999999


Q ss_pred             HHHhhCCCC
Q 010439          172 VVVIPCGTA  180 (510)
Q Consensus       172 ~~Ll~~ga~  180 (510)
                      ++|++++.+
T Consensus       177 ~~L~~~~~~  185 (244)
T 3ui2_A          177 NVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHEE
T ss_pred             HHHHHhccc
Confidence            999987654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.7e-26  Score=209.72  Aligned_cols=134  Identities=20%  Similarity=0.211  Sum_probs=121.9

Q ss_pred             hhhhc-CCchHHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCChHHHHHHHhCCc------HHHHHHHHHcCCCcc
Q 010439           10 QHQQR-QSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGL------INVAKTLIELGANIN   78 (510)
Q Consensus        10 ~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~------~~~v~~Ll~~ga~~n   78 (510)
                      .+.++ ..|+||||+|+..|+.    ++|++||++|+++|.+|..|+||||+|+.. ++      .+++++|+++|+++|
T Consensus        30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~~~~~~~~~~iv~~Ll~~Gadin  108 (186)
T 3t8k_A           30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-GGNDITGTTELCKIFLEKGADIT  108 (186)
T ss_dssp             SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSS
T ss_pred             cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCcchhhHHHHHHHHHHCCCCCC
Confidence            34445 7799999999999985    599999999999999999999999999998 65      689999999999999


Q ss_pred             ccCCCCCCC-hHHHHHHHcC-----CHHHHHHHHH-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc
Q 010439           79 AYRPGGRGG-TPLHHAAKRG-----LEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (510)
Q Consensus        79 ~~~~d~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  146 (510)
                      .+  |..|+ ||||+|+..+     +.+++++|++ +|+|++.+|..|+||||+|+..|+.++|++|+++..+++
T Consensus       109 ~~--d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          109 AL--YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             SC--BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             cc--CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99  89999 9999999954     4579999999 999999999999999999999999999999999876665

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=4.9e-26  Score=212.79  Aligned_cols=138  Identities=25%  Similarity=0.292  Sum_probs=107.3

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChH
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTP   89 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~Tp   89 (510)
                      +.++.+|.|+||+|+..|+.++|++||++|++++.+|..|+||||+||.. |+.+++++|+++ |++++.+  |..|+||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~g~~~~~~--d~~g~tp  143 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GHKDIVEMLFTQPNIELNQQ--NKLGDTA  143 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHTTSTTCCCCCC--CTTSCCH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHcCCCCCcccc--CCCCCCH
Confidence            45567788888888888888888888888888888888888888888887 888888888888 8888887  8888888


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccC
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFY  153 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~  153 (510)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|++.++...  .++..
T Consensus       144 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~--~~~~~  205 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT--LSNAE  205 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh--ccchh
Confidence            888888888888888888888888888888888888888888888888888888766  44443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=5e-25  Score=193.78  Aligned_cols=151  Identities=17%  Similarity=0.077  Sum_probs=141.9

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHc-CCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439           50 GKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (510)
Q Consensus        50 g~TpL~~A~~~~~~~~~v~~Ll~~-ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~  128 (510)
                      |.||||+|+.. |+.+++++|++. +.+++..  |..|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            2 AGDRLSGAAAR-GDVQEVRRLLHRELVHPDAL--NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHH-TCHHHHHHHHHTTCCCTTCC--CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchHHHHHHHh-CCHHHHHHHHHhhCcCcccc--CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            56999999998 999999999998 4488887  8899999999 99999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (510)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~  208 (510)
                      .|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++ ++++.++..+.++++.+...++...+..++
T Consensus        78 ~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADVN--VPDGTGALPIH-LAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999999999  89999999999 99999999999999999 999999999999999999988877766543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=2.4e-25  Score=187.90  Aligned_cols=113  Identities=28%  Similarity=0.335  Sum_probs=99.8

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      +..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. ++.+++++|+++|++++.+  |..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHH
Confidence            45788999999999999999999999999999999999999999987 8899999999999999988  88899999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHc
Q 010439           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK  129 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~  129 (510)
                      +..|+.+++++|+++|++++.+|..|+||||+|...
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            999999999999999999999999999999998443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=5.7e-25  Score=215.30  Aligned_cols=142  Identities=20%  Similarity=0.165  Sum_probs=122.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcc------cCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCccccCCCCCCC
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEW------MDKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPGGRGG   87 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~d~~g~TpL~~A~~~~--~~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (510)
                      .+.++||.|+..|+++.|+.|++.|++++.      .|..|.||||+|+..+  ++.+++++||++|+++|.+  |..|+
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~--d~~G~  227 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--AADGN  227 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC--CTTCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC--CCCCC
Confidence            356889999999999999999999999988      6889999999999852  7899999999999999998  88999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCC
Q 010439           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (510)
Q Consensus        88 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~  167 (510)
                      ||||+|+..|+.+++++||++|++++.+|..|.||||+|+..|+.+++++|+++|++        .|.|||| +|+.+|+
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh-~A~~~g~  298 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLH-VDYSWVI  298 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhH-HHHhcCC
Confidence            999999999999999999999999999999999999999999999999999998865        4789999 8888776


Q ss_pred             H
Q 010439          168 R  168 (510)
Q Consensus       168 ~  168 (510)
                      .
T Consensus       299 ~  299 (301)
T 2b0o_E          299 S  299 (301)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=1.8e-26  Score=232.17  Aligned_cols=159  Identities=14%  Similarity=0.038  Sum_probs=136.3

Q ss_pred             hhcCCchHHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCc---cccCCCCC
Q 010439           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIELGANI---NAYRPGGR   85 (510)
Q Consensus        12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~---n~~~~d~~   85 (510)
                      .++.++.||||+|+..|+.++|++|+++|+..   +..|..|.||||+||.+ |+.++|++|+++|+++   +..  +..
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~--~~~  163 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQ--AEN  163 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHS--HHH
T ss_pred             HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc-CCHHHHHHHHhCCCCccccccC--CCC
Confidence            35667889999999999999999999999722   23455789999999998 9999999999999863   332  222


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCcc--CCCCCCcHHHHHH-HcCCHHHHHHHHhccccccccccccCCCCHHHHHh
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALV--RNDDCHTALGVAR-IKGHINVVRAIESHICYFCGWLREFYGPSFLEALA  162 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~--~d~~g~TpL~~A~-~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A  162 (510)
                       +||||+|+..|+.++|++|+++|++++.  .|..|.||||+|+ ..|+.++|++|+++|++         |.|||| +|
T Consensus       164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---------~~taL~-~A  232 (376)
T 2aja_A          164 -YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---------LAYAEI-HE  232 (376)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---------HHHHHH-CT
T ss_pred             -CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---------cchHHH-HH
Confidence             9999999999999999999999999887  8889999999999 99999999999997742         679999 99


Q ss_pred             hhcCCHHHHHHHhhCCCCCCCC
Q 010439          163 PQLMSRKIWVVVIPCGTANPSK  184 (510)
Q Consensus       163 ~~~~~~~~~~~Ll~~ga~~~~~  184 (510)
                      +..|+.+++++|+++|++++.+
T Consensus       233 a~~g~~evv~lL~~~ga~~~~~  254 (376)
T 2aja_A          233 FEYGEKYVNPFIARHVNRLKEM  254 (376)
T ss_dssp             TTTTTTTHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCcccccc
Confidence            9999999999999999877544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=7.7e-24  Score=212.20  Aligned_cols=148  Identities=21%  Similarity=0.297  Sum_probs=121.4

Q ss_pred             hcCCchHHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439           13 QRQSKDELLYQWVIA-GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~d--~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp   89 (510)
                      .+..+.|+||+|+.. |++++|++||++|+++|..+  ..|.||||+|+.. |+.+++++||++|+++|..  |..|+||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~Gadvn~~--d~~G~Tp  271 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA-NSLLACEFLLQNGANVNQA--DSAGRGP  271 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            345678999999999 99999999999999999998  8999999999997 9999999999999999998  8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccccc-ccccccCCCCHHHHHhhh
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC-GWLREFYGPSFLEALAPQ  164 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~d~~g~t~L~~~A~~  164 (510)
                      ||+|+..|+.+++++||++|++++.+|..|.||||+|+..|+.+++++|+..+.... ....+..+.|+++ ++..
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~-i~~~  346 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD-IFRD  346 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH-HHHH
Confidence            999999999999999999999999999999999999999999999999998874322 1145667888888 4443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=5.4e-24  Score=179.53  Aligned_cols=113  Identities=22%  Similarity=0.225  Sum_probs=105.8

Q ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHH
Q 010439           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  126 (510)
Q Consensus        47 d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A  126 (510)
                      +..|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~-~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHc-CCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            46789999999998 9999999999999999998  88999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439          127 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (510)
Q Consensus       127 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~  165 (510)
                      +..|+.+++++|+++|++++  .+|..|.|||| +|...
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~  116 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKT--VKGPDGLTAFE-ATDNQ  116 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HCCCH
T ss_pred             HHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HhCCH
Confidence            99999999999999999999  89999999999 78443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1.5e-24  Score=202.66  Aligned_cols=134  Identities=17%  Similarity=0.146  Sum_probs=117.2

Q ss_pred             cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccCCCCCCcHHH
Q 010439           46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTALG  124 (510)
Q Consensus        46 ~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~TpL~  124 (510)
                      .+..|.||||+||.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.++|++|++. |++++.+|..|+||||
T Consensus        69 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           69 QAESIDNPLHEAAKR-GNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HEEEESCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             ccccccccccccccc-CcHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            456789999999998 9999999999999999998  88999999999999999999999999 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCC
Q 010439          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP  185 (510)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~  185 (510)
                      +|+..|+.+++++|+++|++++  .+|..|.|||| +|+..+..++++.|+..|++...++
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFD-MATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHH-HCCSHHHHHHHC-------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHH-HhcchhHHHHHHHHhccchhhhccc
Confidence            9999999999999999999999  89999999999 9999999999999999999876555

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.4e-22  Score=196.08  Aligned_cols=125  Identities=19%  Similarity=0.222  Sum_probs=91.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439           18 DELLYQWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPGGRGGTP   89 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~d~~g~TpL~~A~~~~--~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp   89 (510)
                      .++|+.|+..|+.+.++.+++.|++++      ..|..|.||||+|+..+  ++.+++++|+++|+++|.+  |..|+||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~--d~~g~Tp  208 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc--CCCCCCH
Confidence            467777777777777777777777633      33667777777777753  5677777777777777776  6777777


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcccc
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  144 (510)
                      ||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7777777777777777777777777777777777777777777777777777664

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=3.1e-25  Score=201.00  Aligned_cols=115  Identities=27%  Similarity=0.234  Sum_probs=108.4

Q ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCC-CCCCcHHHH
Q 010439           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGV  125 (510)
Q Consensus        47 d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~  125 (510)
                      +..|.||||+|+.. |+.+++++|++ |+++|.+  |..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+
T Consensus        41 ~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHTT-TSCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHc-CCHHHHHHHHh-cCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            56899999999998 99999999999 9999998  8999999999999999999999999999999998 899999999


Q ss_pred             HHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCH
Q 010439          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (510)
Q Consensus       126 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~  168 (510)
                      |+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~  156 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILKT  156 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHHHHT
T ss_pred             HHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHH-HHHHhccC
Confidence            999999999999999999999  89999999999 88765433

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=196.28  Aligned_cols=139  Identities=14%  Similarity=0.096  Sum_probs=124.5

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHcCCCccc------cCCCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCccCCCCCC
Q 010439           50 GKTPLIVACMDSGLINVAKTLIELGANINA------YRPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCH  120 (510)
Q Consensus        50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~------~~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~  120 (510)
                      +.++|+.|+.. |+.+.++.|++.|++++.      .  +..|+||||+|+..   |+.+++++||++|++++.+|..|+
T Consensus       151 ~~~~L~~A~~~-g~~~~v~~ll~~g~d~~~~~~~~~~--~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICN-RDLLSVLEAFANGQDFGQPLPGPDA--QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSCEECSSS--CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             hHHHHhhhhhc-cCHHHHHHHHhcCCcccccCCCccc--CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            34679999998 999999999999999997      4  78999999999997   899999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccC
Q 010439          121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (510)
Q Consensus       121 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~  200 (510)
                      ||||+|+..|+.++|++|+++|++++  .+|.+|.|||| +|+..++.+++++|+++|++      .+.++++.++..++
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence            99999999999999999999999999  99999999999 99999999999999999987      35788888876554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.7e-22  Score=160.18  Aligned_cols=91  Identities=38%  Similarity=0.558  Sum_probs=46.5

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHc
Q 010439           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (510)
Q Consensus        17 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~   96 (510)
                      |+||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARN   78 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHc
Confidence            44555555555555555555555555555555555555555544 4555555555555555544  44555555555555


Q ss_pred             CCHHHHHHHHHCCC
Q 010439           97 GLEPTVRLLLSCGA  110 (510)
Q Consensus        97 g~~~~v~~Ll~~ga  110 (510)
                      |+.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            55555555555444

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=4.8e-22  Score=158.73  Aligned_cols=93  Identities=39%  Similarity=0.608  Sum_probs=83.6

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (510)
Q Consensus        49 ~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~  128 (510)
                      +|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~n~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            488999999998 8899999999999999988  8899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcccc
Q 010439          129 KGHINVVRAIESHICY  144 (510)
Q Consensus       129 ~g~~~~v~~Ll~~ga~  144 (510)
                      .|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999998874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=1.1e-21  Score=189.86  Aligned_cols=166  Identities=13%  Similarity=-0.005  Sum_probs=140.7

Q ss_pred             hhcCCchHHHHHHHHcCCHHHHHHHHHcCCC-----Ccc--------------------------cCCCCChHHHHHHHh
Q 010439           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGAS-----LEW--------------------------MDKEGKTPLIVACMD   60 (510)
Q Consensus        12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~--------------------------~d~~g~TpL~~A~~~   60 (510)
                      ..|.-+.+.|+++...|+..+.+++...-..     ++.                          .+....++|+.|+..
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~  140 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT  140 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence            3477788999999999998776665432110     000                          001124789999997


Q ss_pred             CCcHHHHHHHHHcCCCcccc----CCCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHH
Q 010439           61 SGLINVAKTLIELGANINAY----RPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  133 (510)
Q Consensus        61 ~~~~~~v~~Ll~~ga~~n~~----~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~  133 (510)
                       ++.+.++.|++.|++++..    ..|..|+||||+|+..   |+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus       141 -~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~  219 (278)
T 1dcq_A          141 -RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE  219 (278)
T ss_dssp             -TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             -cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHH
Confidence             9999999999999995532    1267899999999999   8999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCC
Q 010439          134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (510)
Q Consensus       134 ~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~  181 (510)
                      +|++|+++|++++  .+|.+|.|||| +|+..++.+++++|+++|++.
T Consensus       220 ~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          220 CLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCC--CccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999  99999999999 999999999999999999864

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=1.8e-23  Score=210.33  Aligned_cols=174  Identities=11%  Similarity=0.034  Sum_probs=145.1

Q ss_pred             CchHHHHHHHH-cCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCcccc-CCCCCCChHHHHH
Q 010439           16 SKDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHA   93 (510)
Q Consensus        16 ~g~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~-~~d~~g~TpLh~A   93 (510)
                      .+.++|++|.. .++.++++.|+++|.+.       .||||+|+.. |+.+++++|+++|+..... +.+..|.||||+|
T Consensus        64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~-G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A  135 (376)
T 2aja_A           64 RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAIT-GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA  135 (376)
T ss_dssp             HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHH-CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHc-CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH
Confidence            45678888887 58899999999988654       5999999998 9999999999999832111 1145688999999


Q ss_pred             HHcCCHHHHHHHHHCCCCC---ccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccc--cccCCCCHHHHHhh-hcCC
Q 010439           94 AKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL--REFYGPSFLEALAP-QLMS  167 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~---~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~--~d~~g~t~L~~~A~-~~~~  167 (510)
                      +.+|+.++|++|+++|+|+   +..+.+ .||||+|+..|+.++|++|+++|++++  .  +|..|.|||| +|+ ..|+
T Consensus       136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~--~~~~d~~g~TpL~-~Aa~~~G~  211 (376)
T 2aja_A          136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFR-WAAVGRGH  211 (376)
T ss_dssp             HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHH-HHHSTTCC
T ss_pred             HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc--hhccCCCCCCHHH-HHHHHCCC
Confidence            9999999999999999862   333333 899999999999999999999999987  6  8889999999 999 9999


Q ss_pred             HHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010439          168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (510)
Q Consensus       168 ~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~  208 (510)
                      .+++++|+++|+       .+.++++.+...++...+..+.
T Consensus       212 ~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~  245 (376)
T 2aja_A          212 HNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIA  245 (376)
T ss_dssp             HHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHH
T ss_pred             HHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHH
Confidence            999999999885       3789999999998887655544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=1.7e-22  Score=168.07  Aligned_cols=106  Identities=30%  Similarity=0.417  Sum_probs=55.5

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      |.+|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.+  |..|+||||+|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~tpl~~A   82 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNAR--SKDGNTPEHLA   82 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTCC--CTTCCCTTHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCCHHHHH
Confidence            44555555555555555555555555555555555555555555544 5555555555555555544  44555555555


Q ss_pred             HHcCCHHHHHHHHHCCCCCccCCCCCCcH
Q 010439           94 AKRGLEPTVRLLLSCGANALVRNDDCHTA  122 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp  122 (510)
                      +..|+.+++++|+++|++++.++..|.||
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            55555555555555555555555555444

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=6e-22  Score=164.71  Aligned_cols=109  Identities=34%  Similarity=0.499  Sum_probs=102.0

Q ss_pred             ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHH
Q 010439           45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (510)
Q Consensus        45 ~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~  124 (510)
                      .+|.+|+||||+|+.. |+.+++++|+++|++++..  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus         4 ~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHH-TCHHHHHHHTTTTCCSSCC--CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            4788999999999998 9999999999999999998  899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhccccccccccccCCCCHH
Q 010439          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFL  158 (510)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L  158 (510)
                      +|+..|+.+++++|+++|++++  .++..|.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVN--ARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHH--HHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCC--cCCccccccc
Confidence            9999999999999999999999  8888888874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=4.8e-22  Score=188.60  Aligned_cols=167  Identities=20%  Similarity=0.088  Sum_probs=138.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~   95 (510)
                      .+.+++++++..|+.+.++.+...+.++   +..|.||||+|+.. |+.+++++|++ |+++|.+  |..|+||||+|+.
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~   86 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAG   86 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHHTT-TCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHH
T ss_pred             CCccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHHHc-CCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHH
Confidence            4556666666666666655555444333   45799999999997 99999999999 9999998  8999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHH
Q 010439           96 RGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (510)
Q Consensus        96 ~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~L  174 (510)
                      .|+.++|++|+++|++++.++ ..|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+..+.       
T Consensus        87 ~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~-~A~~~~~-------  156 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILK-------  156 (244)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHHT-------
T ss_pred             CCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHH-HHHHHHh-------
Confidence            999999999999999999999 889999999999999999999999999999  89999999999 7765222       


Q ss_pred             hhCCCCCCCCCccccccccccccccChHHHHHHHH
Q 010439          175 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK  209 (510)
Q Consensus       175 l~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~  209 (510)
                        .        ..+.++++.+...++...+..+..
T Consensus       157 --~--------~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          157 --T--------TPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             --T--------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             --c--------cCCCCHHHHHHHcChHHHHHHHHH
Confidence              1        245778888887777666655543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=3e-21  Score=193.42  Aligned_cols=132  Identities=19%  Similarity=0.131  Sum_probs=121.1

Q ss_pred             cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHH
Q 010439           46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV  125 (510)
Q Consensus        46 ~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~  125 (510)
                      .+..+.|+||+|+...++.+++++||++|+++|..+.+..|+||||+|+..|+.+++++||++|++++.+|..|+||||+
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            33456789999997548899999999999999998333899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCC
Q 010439          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (510)
Q Consensus       126 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~  180 (510)
                      |+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+..+..
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~-~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLG--ARDSEGRDPLT-IAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999  99999999999 99999999999999987743

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=4.2e-19  Score=146.34  Aligned_cols=92  Identities=30%  Similarity=0.414  Sum_probs=63.0

Q ss_pred             hhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHH
Q 010439           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (510)
Q Consensus        11 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpL   90 (510)
                      ...+.+|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+|||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~tpl   94 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQ--DKFGKTAF   94 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccCCCcHH
Confidence            34466677777777777777777777777777777777777777777765 6777777777777777766  66677777


Q ss_pred             HHHHHcCCHHHHHHH
Q 010439           91 HHAAKRGLEPTVRLL  105 (510)
Q Consensus        91 h~A~~~g~~~~v~~L  105 (510)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            777777777777665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=9.2e-19  Score=144.30  Aligned_cols=92  Identities=27%  Similarity=0.389  Sum_probs=80.2

Q ss_pred             cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHH
Q 010439           44 EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL  123 (510)
Q Consensus        44 ~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL  123 (510)
                      ...|.+|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus        18 ~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~i~~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl   94 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARA-GQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF   94 (110)
T ss_dssp             ----CCHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cccCCccchHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH
Confidence            44677899999999988 8899999999999999988  88899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHH
Q 010439          124 GVARIKGHINVVRAI  138 (510)
Q Consensus       124 ~~A~~~g~~~~v~~L  138 (510)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999998877

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.50  E-value=8.9e-15  Score=106.57  Aligned_cols=56  Identities=27%  Similarity=0.790  Sum_probs=50.6

Q ss_pred             cccccccccccccceEEe--CCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439          455 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  510 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~  510 (510)
                      ....|.||++.+++++++  ||||.++|..|+.+++..+++||+||++|.++++||.+
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s   63 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA   63 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence            346899999999999888  99999669999999997777899999999999999974

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.49  E-value=1e-14  Score=106.62  Aligned_cols=56  Identities=34%  Similarity=0.823  Sum_probs=51.2

Q ss_pred             cccccccccccccceEEe--CCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439          455 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  510 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~  510 (510)
                      ++..|.||++.+++++++  ||||.++|..|+.+|+..++.||+||++|.+++++|..
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~   64 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP   64 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence            446899999999999998  99999779999999998778899999999999999963

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1e-13  Score=102.33  Aligned_cols=53  Identities=28%  Similarity=0.734  Sum_probs=47.2

Q ss_pred             CCcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeee
Q 010439          453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  509 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~  509 (510)
                      ..+...|.||++.+++++++||||.++|..|+.++.    +||+||++|..+++||.
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG   64 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence            445579999999999999999999955999999765    59999999999999985

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.25  E-value=1.5e-12  Score=99.27  Aligned_cols=51  Identities=33%  Similarity=0.974  Sum_probs=46.2

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeee
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  509 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~  509 (510)
                      +...|.||++.+.+++++||||.++|..|+..++    .||+||.+|..++++|.
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~   67 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYL   67 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBC
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEe
Confidence            3468999999999999999999955999999886    49999999999999985

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.19  E-value=4.3e-12  Score=95.66  Aligned_cols=52  Identities=29%  Similarity=0.750  Sum_probs=46.0

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  510 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~  510 (510)
                      +...|.||++.+.+++++||||..+|..|+..|.    .||+||++|.+.+++|.+
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S   74 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKILMS   74 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS----BCTTTCCBCSEEEECBC-
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc----cCCCcCcCccCcEEEeeC
Confidence            4468999999999999999999944999999884    599999999999999863

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=2.5e-11  Score=90.85  Aligned_cols=49  Identities=27%  Similarity=0.670  Sum_probs=44.1

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .+...|.||++.+.+++.+||||.| |..|+..|......||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence            3456899999999999999999999 999999998877899999999864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=5.7e-12  Score=95.34  Aligned_cols=52  Identities=29%  Similarity=0.783  Sum_probs=45.7

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeeeC
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  510 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~~  510 (510)
                      +...|.||++.+.+++++||||.++|..|+.++.    .||+||.+|...++||.+
T Consensus        24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S   75 (75)
T 2ecg_A           24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIFMS   75 (75)
T ss_dssp             HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCS----BCTTTCCBCCCCCBCCCC
T ss_pred             CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCC----CCccCCceecCcEEEecC
Confidence            3468999999999999999999933999998764    599999999999999863

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=2.9e-11  Score=90.21  Aligned_cols=53  Identities=23%  Similarity=0.729  Sum_probs=46.5

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEee
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  508 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~  508 (510)
                      .+...|.||++.+.+ +.+||||.| |..|+.+|......||+||.++.....+|
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   65 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS   65 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence            345789999999998 889999998 99999999887779999999998766655

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=5.9e-11  Score=91.29  Aligned_cols=50  Identities=24%  Similarity=0.472  Sum_probs=44.9

Q ss_pred             CCcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      ..+...|.||++.+.+++.+||||.| |..|+..|......||+||.++..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   61 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG   61 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred             CCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence            34557899999999999999999999 999999998877899999999864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=6.8e-11  Score=88.67  Aligned_cols=52  Identities=23%  Similarity=0.507  Sum_probs=45.6

Q ss_pred             CCCcccccccccccccceEEe-CCCCccchHHhHHHHhccCCccccccccccce
Q 010439          452 DDGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  504 (510)
Q Consensus       452 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  504 (510)
                      +..+...|.||++.+.+++.+ +|||.| |..|+..|...+..||+||.++...
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence            345567999999999999987 999999 9999999987777999999998754

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.08  E-value=3.2e-11  Score=90.30  Aligned_cols=53  Identities=36%  Similarity=0.803  Sum_probs=45.6

Q ss_pred             cccccccccccccce-------EEeCCCCccchHHhHHHHhccCCcccccccccc--ceeEee
Q 010439          455 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  508 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~i~  508 (510)
                      +...|.||++...++       +.++|||.| |..|+..|...+..||+||.++.  ++.++|
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence            446899999998776       889999999 99999999888889999999986  455665

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.07  E-value=4.7e-11  Score=87.31  Aligned_cols=53  Identities=36%  Similarity=0.789  Sum_probs=45.8

Q ss_pred             cccccccccccccce-------EEeCCCCccchHHhHHHHhccCCcccccccccc--ceeEee
Q 010439          455 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  508 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~i~  508 (510)
                      +...|.||++...+.       +.++|||.| |..|+.+|...+..||+||+++.  +.+++|
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   63 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY   63 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence            346899999987765       888999999 99999999888889999999997  567776

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=6.9e-11  Score=87.86  Aligned_cols=49  Identities=37%  Similarity=0.826  Sum_probs=42.7

Q ss_pred             Ccccccccccccccce-------EEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .+...|.||++.+.+.       +.++|||.| |..|+..|...+..||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence            3457899999987765       889999999 999999998877899999998864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=2.1e-10  Score=86.21  Aligned_cols=49  Identities=27%  Similarity=0.739  Sum_probs=42.7

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhc---cCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~Cp~Cr~~i~~  503 (510)
                      .+...|.||++.+.+++.++|||.| |..|+..|..   ....||+||+++..
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            3457999999999999999999999 9999999986   24489999998864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.02  E-value=2.2e-10  Score=85.12  Aligned_cols=52  Identities=23%  Similarity=0.638  Sum_probs=43.8

Q ss_pred             CCcccccccccccc---cceEEeCCCCccchHHhHHHHhccCCcccccccccccee
Q 010439          453 DGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  505 (510)
Q Consensus       453 ~~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  505 (510)
                      ......|.||++..   ..++.+||||.| |..|+..|...+..||+||..+...+
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcC
Confidence            34557899998875   457789999999 99999999888889999999987654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.02  E-value=8.9e-11  Score=86.99  Aligned_cols=52  Identities=27%  Similarity=0.758  Sum_probs=45.5

Q ss_pred             ccccccccccccce-EEeCCCCccchHHhHHHHhccCCccccccccccceeEee
Q 010439          456 SSSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  508 (510)
Q Consensus       456 ~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~  508 (510)
                      ...|.||++...+. +.+||||.| |..|+.+|...+..||+||.++...++.+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred             CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence            36899999999884 888999999 99999999887789999999998776553

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.02  E-value=1.4e-10  Score=98.88  Aligned_cols=49  Identities=33%  Similarity=0.775  Sum_probs=44.4

Q ss_pred             ccccccccccccceEEeCCCCccchHHhHHHHhccCCcccccccccccee
Q 010439          456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  505 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  505 (510)
                      +..|+||++.+.+++.+||||.| |..|+..|...+..||+||.+|....
T Consensus        53 ~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT  101 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred             cCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence            35799999999999999999999 99999999988889999999997543

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.99  E-value=2.7e-10  Score=89.53  Aligned_cols=49  Identities=35%  Similarity=0.719  Sum_probs=42.9

Q ss_pred             Ccccccccccccccc---eEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      ++...|.||++.+..   ++.+||||.| |..|+..|...+..||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence            455789999998776   7788999999 999999999888899999998864

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=2.7e-10  Score=83.80  Aligned_cols=49  Identities=22%  Similarity=0.563  Sum_probs=42.8

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhc-cCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~  503 (510)
                      .+...|+||++...+++.++|||.| |..|+.+|.. ....||+||+++..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            3457899999999999999999999 9999999984 34589999998864

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.98  E-value=2.5e-10  Score=85.97  Aligned_cols=49  Identities=22%  Similarity=0.613  Sum_probs=43.0

Q ss_pred             CCcccccccccccccceEEeC-CCCccchHHhHHHHhccC--Ccccccccccc
Q 010439          453 DGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  502 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~  502 (510)
                      ..+...|.||++.+.+++.+| |||.| |..|+..|...+  ..||+||+++.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           12 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             SCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            345579999999999999999 99999 999999998754  58999999754

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=2e-10  Score=86.67  Aligned_cols=54  Identities=26%  Similarity=0.501  Sum_probs=43.9

Q ss_pred             CCccccccccccccc---ceEEeCCCCccchHHhHHHHhccCCccccccccccceeEe
Q 010439          453 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  507 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i  507 (510)
                      ......|.||++.+.   ..+.+||||.| |..|+..|...+..||+||.++....++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCccccccccc
Confidence            344578999999864   34456999999 9999999998878999999999765543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.97  E-value=2.2e-10  Score=80.91  Aligned_cols=46  Identities=33%  Similarity=0.738  Sum_probs=40.8

Q ss_pred             ccccccccccccc----eEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          456 SSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       456 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      ...|.||++...+    ++.++|||.| |..|+.+|......||+||+++.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence            4689999998755    8889999999 99999999887789999999875

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.96  E-value=2.8e-10  Score=86.79  Aligned_cols=49  Identities=31%  Similarity=0.686  Sum_probs=41.3

Q ss_pred             Cccccccccccccc---ceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .+...|.||++.+.   ..+.+||||.| |..|+.+|...+..||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence            44579999988764   44667999999 999999999877899999999865

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.95  E-value=4.8e-10  Score=88.45  Aligned_cols=50  Identities=22%  Similarity=0.597  Sum_probs=43.0

Q ss_pred             CCCcccccccccccccceEEeC-CCCccchHHhHHHHhccC--Ccccccccccc
Q 010439          452 DDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  502 (510)
Q Consensus       452 ~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~  502 (510)
                      +..+...|+||++.+.+++.+| |||.| |..|+..|....  ..||+||.++.
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            3445679999999999999999 99999 999999997643  48999999873

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.94  E-value=2.9e-10  Score=80.24  Aligned_cols=47  Identities=23%  Similarity=0.677  Sum_probs=40.8

Q ss_pred             cccccccccccccc---eEEeC-CCCccchHHhHHHHhccCCcccccccccc
Q 010439          455 SSSSCVICWEAPVE---GACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       455 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      +...|.||++...+   ++.+| |||.| |..|+..|...+..||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence            34689999999776   77787 99999 99999999988889999998763

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=6.5e-10  Score=86.87  Aligned_cols=49  Identities=31%  Similarity=0.651  Sum_probs=42.6

Q ss_pred             CCcccccccccccccc----eEEeCCCCccchHHhHHHHhccC---Ccccccccccc
Q 010439          453 DGSSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN  502 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~---~~Cp~Cr~~i~  502 (510)
                      ..+...|.||++.+.+    ++.++|||.| |..|+.+|....   ..||+||.++.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            3445789999999988    9999999999 999999998765   58999999875

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.93  E-value=7e-10  Score=86.06  Aligned_cols=49  Identities=33%  Similarity=0.704  Sum_probs=43.1

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhcc------CCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~Cp~Cr~~i~~  503 (510)
                      .+...|.||++.+.+++.+||||.| |..|+..|...      ...||+||.++..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            3456899999999999999999999 99999998876      4589999999863

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3.4e-10  Score=85.55  Aligned_cols=48  Identities=23%  Similarity=0.605  Sum_probs=41.3

Q ss_pred             cccccccccccccce---EEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          455 SSSSCVICWEAPVEG---ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      +...|.||++.+...   +.+||||.| |..|+..|...+..||+||+.+..
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence            446899999886554   788999999 999999998888899999998864

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.92  E-value=4.1e-10  Score=85.24  Aligned_cols=55  Identities=27%  Similarity=0.655  Sum_probs=43.1

Q ss_pred             CCcccccccccccc--cceEEeC--CCCccchHHhHHHHhcc-CCccccccccccceeEee
Q 010439          453 DGSSSSCVICWEAP--VEGACVP--CGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRLY  508 (510)
Q Consensus       453 ~~~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~~i~  508 (510)
                      ..++..|+||++..  .+++++|  |||.| |..|+.+++.. ...||.||+++.....+|
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~   67 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY   67 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred             cccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence            34557899999976  4556666  99999 99999999854 458999999998654444

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.92  E-value=2.5e-10  Score=87.31  Aligned_cols=50  Identities=30%  Similarity=0.693  Sum_probs=43.1

Q ss_pred             CCcccccccccccccceEEeCCCCccchHHhHHHHhcc-------CCccccccccccc
Q 010439          453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-------KGDCPVCRTKINQ  503 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~Cp~Cr~~i~~  503 (510)
                      ..+...|.||++.+.+++.+||||.| |..|+.+|...       ...||+||.++..
T Consensus         9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            34557999999999999999999999 99999998775       4589999999853

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.90  E-value=9.6e-10  Score=83.77  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=43.4

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      +...|+||++.+.+++.++|||.| |..|+.+|... ...||+||.++..
T Consensus         7 ~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            7 EYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            457999999999999999999999 99999999986 5689999999863

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=1.8e-09  Score=78.52  Aligned_cols=43  Identities=28%  Similarity=0.773  Sum_probs=38.0

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhcc---CCccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVC  497 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~Cp~C  497 (510)
                      .+...|+||++.+.+++.++|||.| |..|+.+|...   +..||+|
T Consensus        18 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence            4457899999999999999999999 99999999873   4489998

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=8.3e-10  Score=85.63  Aligned_cols=49  Identities=33%  Similarity=0.777  Sum_probs=42.9

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhcc------CCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~Cp~Cr~~i~~  503 (510)
                      .+...|.||++.+.+++.+||||.| |..|+..|...      ...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            3457899999999999999999999 99999998765      5689999999863

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.86  E-value=7.3e-10  Score=88.73  Aligned_cols=47  Identities=26%  Similarity=0.728  Sum_probs=42.8

Q ss_pred             cccccccccccccceEE-eCCCCccchHHhHHHHhccC-Ccccccccccc
Q 010439          455 SSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKK-GDCPVCRTKIN  502 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~  502 (510)
                      +...|+||++.+.+++. ++|||.| |..|+..|.... ..||+||.++.
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence            44689999999999999 9999999 999999998876 58999999985

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.83  E-value=1.2e-09  Score=79.92  Aligned_cols=47  Identities=28%  Similarity=0.676  Sum_probs=38.3

Q ss_pred             ccccccccc-cccce----EEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          456 SSSCVICWE-APVEG----ACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       456 ~~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      +..|+||++ ...++    +.++|||.| |..|+.+|... ...||+||.++..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence            368999999 55554    568999999 99999999554 3579999999963

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=2.1e-09  Score=76.71  Aligned_cols=43  Identities=33%  Similarity=0.774  Sum_probs=37.3

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhc---cCCccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVC  497 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~Cp~C  497 (510)
                      .+...|.||++.+.+++.++|||.| |..|+.+|..   .+..||+|
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence            3457899999999999999999999 9999999954   34589998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.81  E-value=1.5e-09  Score=90.67  Aligned_cols=48  Identities=25%  Similarity=0.629  Sum_probs=42.5

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~  503 (510)
                      +...|+||++.+.+++.+||||.| |..|+..|..... .||+||.++..
T Consensus        51 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence            346899999999999999999999 9999999987544 89999999865

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.81  E-value=1.8e-09  Score=86.37  Aligned_cols=48  Identities=25%  Similarity=0.620  Sum_probs=43.4

Q ss_pred             cccccccccccccceEEe-CCCCccchHHhHHHHhccCCccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      +...|.||++.+.+++.+ +|||.| |..|+..|...+..||+||.++..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence            446899999999999988 899999 999999999877899999998864

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.80  E-value=2.6e-09  Score=86.84  Aligned_cols=49  Identities=20%  Similarity=0.636  Sum_probs=44.2

Q ss_pred             CcccccccccccccceEEe-CCCCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .+...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence            3457899999999999998 999999 999999998877899999999874

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.77  E-value=4.8e-10  Score=79.30  Aligned_cols=45  Identities=24%  Similarity=0.540  Sum_probs=38.8

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      .+...|.||++.+.+++.+||||.| |..|+..+   ...||+||+.+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcc-cHHHHccC---CCCCCcCCcEee
Confidence            3456899999999999999999999 99998763   347999999886

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.76  E-value=3.9e-09  Score=103.60  Aligned_cols=50  Identities=34%  Similarity=0.792  Sum_probs=45.1

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhc-cCCccccccccccceeEe
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL  507 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~i  507 (510)
                      ..|+||++...+++.+||||.| |..|+..|.. ....||+||+++.....+
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred             CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence            5899999999999999999999 9999999987 466899999999876655

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.76  E-value=6.5e-09  Score=80.26  Aligned_cols=49  Identities=10%  Similarity=0.015  Sum_probs=44.5

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .++..|+||++...++|.++|||.| |..|+.+|+.....||+||.++..
T Consensus        12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence            3557999999999999999999999 999999999877799999998864

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.75  E-value=1.7e-09  Score=89.05  Aligned_cols=49  Identities=35%  Similarity=0.761  Sum_probs=42.9

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      .++..|.||++.+.+++.++|||.| |..|+..|... ...||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3457899999999999999999999 99999999865 4589999998853

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.74  E-value=1.6e-09  Score=105.83  Aligned_cols=51  Identities=29%  Similarity=0.900  Sum_probs=45.5

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccceeEeee
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  509 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~i~~  509 (510)
                      ++..|+||++.+.+++++||||.++|..|+..+.    .||+||.+|...++||.
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~  344 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFL  344 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC-
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeec
Confidence            3468999999999999999999944999999884    59999999999999985

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.74  E-value=3.7e-09  Score=91.11  Aligned_cols=49  Identities=31%  Similarity=0.602  Sum_probs=43.3

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccce
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQV  504 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~~  504 (510)
                      +...|.||++.+.+++.+||||.| |..|+..|..... .||+||.++...
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            446899999999999999999999 9999999987654 799999998753

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.73  E-value=6.4e-09  Score=85.99  Aligned_cols=50  Identities=32%  Similarity=0.616  Sum_probs=44.0

Q ss_pred             CCcccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccc
Q 010439          453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  503 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~  503 (510)
                      ..+...|+||++...+++.++|||.| |..|+..|..... .||+||.++..
T Consensus        15 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            34557999999999999999999999 9999999987654 89999999865

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.72  E-value=1.5e-08  Score=80.30  Aligned_cols=49  Identities=10%  Similarity=-0.002  Sum_probs=44.4

Q ss_pred             CcccccccccccccceEEeCCC-CccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .++..|+||++.+.++|.++|| |.| |..|+.+|+.....||+||.++..
T Consensus        20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence            3457999999999999999999 999 999999999877789999998864

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.72  E-value=9.4e-09  Score=81.84  Aligned_cols=49  Identities=10%  Similarity=0.032  Sum_probs=44.6

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .+...|+||++...++|.+||||.| |..|+.+|+.....||+||.++..
T Consensus        27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence            4557999999999999999999999 999999999877799999998864

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=8.1e-09  Score=79.04  Aligned_cols=46  Identities=22%  Similarity=0.545  Sum_probs=37.7

Q ss_pred             ccccccccccccc--------------eEEe-CCCCccchHHhHHHHhccCCcccccccccc
Q 010439          456 SSSCVICWEAPVE--------------GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       456 ~~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      +..|.||++.+.+              ++.+ +|||.| |..|+.+|...+..||+||+++.
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcc
Confidence            3568888887654              4444 599999 99999999988889999999875

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.70  E-value=6.3e-09  Score=85.54  Aligned_cols=46  Identities=26%  Similarity=0.616  Sum_probs=38.0

Q ss_pred             cccccccccccce------------------EEeCCCCccchHHhHHHHhc-----cCCccccccccccc
Q 010439          457 SSCVICWEAPVEG------------------ACVPCGHMAGCMSCLSEIKA-----KKGDCPVCRTKINQ  503 (510)
Q Consensus       457 ~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~-----~~~~Cp~Cr~~i~~  503 (510)
                      ..|+||++.+...                  +.++|||.| |..|+..|..     ....||+||+.+..
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            5899999987543                  378999999 9999999983     34589999998754

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.69  E-value=5.6e-09  Score=91.89  Aligned_cols=48  Identities=27%  Similarity=0.619  Sum_probs=42.7

Q ss_pred             CcccccccccccccceEEe-CCCCccchHHhHHHHhcc-CCcccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  502 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  502 (510)
                      .+...|+||++.+.+++.+ +|||.| |..|+..|... ...||+||.++.
T Consensus        52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence            3456999999999999988 999999 99999999876 568999999985

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.67  E-value=4.2e-09  Score=86.33  Aligned_cols=47  Identities=30%  Similarity=0.752  Sum_probs=41.6

Q ss_pred             ccccccccccccceEEeCCCCccchHHhHHHHhccCC---ccccccccccc
Q 010439          456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG---DCPVCRTKINQ  503 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~---~Cp~Cr~~i~~  503 (510)
                      ...|+||++.+.+++.+||||.| |..|+..|.....   .||+||.++..
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            45899999999999999999999 9999999987543   79999998863

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.66  E-value=1e-08  Score=87.26  Aligned_cols=47  Identities=23%  Similarity=0.507  Sum_probs=42.0

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKI  501 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i  501 (510)
                      .+...|+||++.+.+++.++|||.| |..|+..|..... .||+||.++
T Consensus        29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence            4557999999999999999999999 9999999987554 899999975

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.63  E-value=1.2e-08  Score=84.14  Aligned_cols=48  Identities=27%  Similarity=0.529  Sum_probs=43.1

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      +...|+||++.+.+++.++|||.| |..|+.+|... ...||+||.++..
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            446899999999999999999999 99999999876 5689999999864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.63  E-value=1.5e-08  Score=85.75  Aligned_cols=48  Identities=38%  Similarity=0.840  Sum_probs=42.9

Q ss_pred             cccccccccccccce-------EEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          455 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      +...|.||++.+.++       +.++|||.| |..|+.+|...+..||+||+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence            346899999998877       899999999 999999999888899999999863

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.57  E-value=2.1e-08  Score=84.71  Aligned_cols=53  Identities=36%  Similarity=0.803  Sum_probs=45.9

Q ss_pred             cccccccccccccce-------EEeCCCCccchHHhHHHHhccCCcccccccccc--ceeEee
Q 010439          455 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  508 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~i~  508 (510)
                      +...|.||++...+.       +.++|||.| |..|+.+|...++.||+||.++.  +.+++|
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence            346899999987765       888999999 99999999988889999999996  466776

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.51  E-value=6.4e-08  Score=77.65  Aligned_cols=46  Identities=22%  Similarity=0.474  Sum_probs=38.6

Q ss_pred             ccccccccccccc------------------eEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          456 SSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       456 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      ...|.||++.+..                  .+.++|+|.| |..|+..|...+..||+||+.+.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence            3579999887553                  4668999999 99999999988889999999853

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.47  E-value=1.7e-08  Score=83.31  Aligned_cols=45  Identities=31%  Similarity=0.693  Sum_probs=40.6

Q ss_pred             cccccccccccccceEEe-CCCCccchHHhHHHHhccCCcccccccccc
Q 010439          455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      +...|+||++.+.+++.+ +|||.| |..|+..|..  ..||+||.++.
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc--CCCcCCCCcCc
Confidence            446899999999999999 999999 9999999876  57999999885

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.38  E-value=1.4e-07  Score=83.35  Aligned_cols=50  Identities=30%  Similarity=0.563  Sum_probs=43.8

Q ss_pred             CCcccccccccccccceEEeCCCCccchHHhHHHHhccC-Cccccccccccc
Q 010439          453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  503 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  503 (510)
                      ..+...|+||++.+.+++.++|||.| |..|+.+|...+ ..||+||.++..
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence            34567999999999999999999999 999999997654 489999999865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.38  E-value=1.6e-07  Score=90.23  Aligned_cols=48  Identities=23%  Similarity=0.188  Sum_probs=42.7

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~  503 (510)
                      ....|+||++.+.++|.+||||.| |..|+.+|+...+ .||+||.++..
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence            346899999999999999999999 9999999987644 59999999863

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.6e-07  Score=73.99  Aligned_cols=45  Identities=22%  Similarity=0.399  Sum_probs=39.4

Q ss_pred             cccccccccccccceEEeC-CCCccchHHhHHHHhccC------Ccccc--cccc
Q 010439          455 SSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK------GDCPV--CRTK  500 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~------~~Cp~--Cr~~  500 (510)
                      +...|+||++.+.++|.++ |||.| |..|+..|+...      ..||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4478999999999999996 99999 999999998753      38999  9865

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.33  E-value=2.8e-07  Score=80.86  Aligned_cols=48  Identities=23%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCC-ccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~Cp~Cr~~i~~  503 (510)
                      +...|+||++...++|.+||||.| |..|+..|+...+ .||+||.++..
T Consensus       105 ~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             HhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            457999999999999999999999 9999999997644 69999998864

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.28  E-value=1.1e-07  Score=77.35  Aligned_cols=45  Identities=22%  Similarity=0.492  Sum_probs=0.0

Q ss_pred             cccccccccccc------------------eEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          457 SSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       457 ~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      ..|.||++.+.+                  ++..+|+|.| |..|+..|...+..||+||+++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence            589999988654                  2335999999 99999999888789999999853

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=7.9e-07  Score=67.30  Aligned_cols=48  Identities=23%  Similarity=0.500  Sum_probs=39.0

Q ss_pred             cccccccccccc--cceEEeCCC-----CccchHHhHHHHhccC--Cccccccccccc
Q 010439          455 SSSSCVICWEAP--VEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~  503 (510)
                      +...|.||++..  .+.+.+||.     |.| +..|+.+|...+  ..||+||..+.-
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            346899999764  456678996     999 999999998764  489999998854

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.04  E-value=2.8e-06  Score=78.19  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=41.1

Q ss_pred             cccccccccccccceEEe-CCCCccchHHhHHHHhccC--Ccccc--cccccc
Q 010439          455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPV--CRTKIN  502 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~Cp~--Cr~~i~  502 (510)
                      .+..|+||++.+.++|.. .|||.| |..|+.+++...  ..||+  ||..+.
T Consensus       180 ~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          180 IELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             CCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             eeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            346899999999999985 999999 999999998754  47999  999875

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.99  E-value=2.5e-06  Score=60.88  Aligned_cols=50  Identities=14%  Similarity=0.269  Sum_probs=44.2

Q ss_pred             cccccccccccceEEe-CCCCccchHHhHHHHhccCCcccccccccc--ceeEe
Q 010439          457 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRL  507 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~i  507 (510)
                      ..|+||++...++|.. +|||.| |..|+.+|...++.||+++.++.  +.+.+
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~   56 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEI   56 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred             EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence            6899999999999999 999999 99999999987778999999985  34444

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.84  E-value=4.6e-06  Score=65.53  Aligned_cols=44  Identities=25%  Similarity=0.557  Sum_probs=34.3

Q ss_pred             ccccccccccccceEEe---CCCCccchHHhHHHHhcc--------CCcccc--cccc
Q 010439          456 SSSCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAK--------KGDCPV--CRTK  500 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~---pCgH~~~C~~C~~~~~~~--------~~~Cp~--Cr~~  500 (510)
                      ...|.||++.....+.+   +|||.| |..|+...+..        ..+||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            36899999986654333   799999 99999887652        137999  9987

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.68  E-value=3.4e-05  Score=59.25  Aligned_cols=49  Identities=24%  Similarity=0.552  Sum_probs=36.3

Q ss_pred             cccccccccc-ceEEeCCCCccchHHhHHHHhcc-CCccccccccccceeEe
Q 010439          458 SCVICWEAPV-EGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRL  507 (510)
Q Consensus       458 ~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~~i  507 (510)
                      .|.+|--... -...+||.|+| |++|+..+..+ .+.||.|+.+|..+-++
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~   53 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC   53 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred             ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence            4677754432 23467999999 99999998754 46899999999876543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=5.7e-05  Score=55.78  Aligned_cols=48  Identities=23%  Similarity=0.633  Sum_probs=38.8

Q ss_pred             cccccccccccccceE-EeCCCCccchHHhHHHHhccC--Cccccccccccc
Q 010439          455 SSSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~  503 (510)
                      ....|.||++...... ...|+|.| ...|+.+|.+.+  ..||+||.....
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            4468999999865433 33799999 999999998876  689999988753

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.43  E-value=6.6e-05  Score=53.16  Aligned_cols=49  Identities=27%  Similarity=0.434  Sum_probs=37.5

Q ss_pred             CcccccccccccccceEEeCCCCc----cchHHhHHHHhcc--CCcccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHM----AGCMSCLSEIKAK--KGDCPVCRTKIN  502 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~Cp~Cr~~i~  502 (510)
                      ++...|.||++...+....||.+.    ++...|+.+|...  +..||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            345689999987666667897641    3499999999864  458999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.20  E-value=8.3e-05  Score=70.70  Aligned_cols=49  Identities=27%  Similarity=0.678  Sum_probs=37.2

Q ss_pred             Ccccccccccccccc------eEE--eCCCCccchHHhHHHHhccC-----------Cccccccccccc
Q 010439          454 GSSSSCVICWEAPVE------GAC--VPCGHMAGCMSCLSEIKAKK-----------GDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~------~~~--~pCgH~~~C~~C~~~~~~~~-----------~~Cp~Cr~~i~~  503 (510)
                      +...+|.||++...+      .++  .+|||.| ...|..+|.+..           +.||+||++|..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            345699999986544      222  2799999 999999997531           469999999864

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=93.22  E-value=0.056  Score=39.15  Aligned_cols=33  Identities=30%  Similarity=0.635  Sum_probs=27.7

Q ss_pred             ccccccccccccceEEeCC----CCccchHHhHHHHhc
Q 010439          456 SSSCVICWEAPVEGACVPC----GHMAGCMSCLSEIKA  489 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pC----gH~~~C~~C~~~~~~  489 (510)
                      ...|.+|.++..+.-|+.|    .|.| |+.|.....+
T Consensus        15 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sIk   51 (93)
T 2cs3_A           15 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESIK   51 (93)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHHH
T ss_pred             eeEeecchhhhccCceeeCCCccCCee-eccccHHHHH
Confidence            3689999999999988888    4999 9999866543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=93.09  E-value=0.07  Score=48.98  Aligned_cols=46  Identities=22%  Similarity=0.575  Sum_probs=36.4

Q ss_pred             ccccccccccccceEEe-CCCCccchHHhHHHHhccC--Ccccccccccc
Q 010439          456 SSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  502 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~Cp~Cr~~i~  502 (510)
                      ...|.||.+.......- .|+|.| ...|+.++.+..  ..||.|+....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            36899999986554443 499999 999999997654  38999998764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.15  E-value=0.1  Score=40.78  Aligned_cols=31  Identities=23%  Similarity=0.510  Sum_probs=24.9

Q ss_pred             cccccccccc-ccceEE--eCCCCccchHHhHHHH
Q 010439          456 SSSCVICWEA-PVEGAC--VPCGHMAGCMSCLSEI  487 (510)
Q Consensus       456 ~~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~~  487 (510)
                      +..|.||.+. +..++.  +.|+|.| |..|...+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHH-hHHHCHHH
Confidence            3689999975 455555  8999999 99999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	510
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.004
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	9e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-06
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	9e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	9e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-05
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	5e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	9e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 4e-16
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
           TPL VA    G + + K L++ GA+ N      +  TPLH AA+ G     + LL   A 
Sbjct: 2   TPLHVASF-MGHLPIVKNLLQRGASPNV--SNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 112 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP 155
              +  D  T L  A   GH N+V+ +  +           + P
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 7e-15
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G +  ++ L  +GAS    + + +TPL +A   +G   VAK L++  A +NA 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGHTEVAKYLLQNKAKVNA- 61

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                  TPLH AA+ G    V+LLL   AN  +     HT L +A  +GH+  V A+  
Sbjct: 62  -KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 141 HICY 144
               
Sbjct: 121 KEAS 124

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G V     L   G  ++   + G TPL VA     +  V   L       +  
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVN 324

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
                G +PLH AA++G    V LLL  GA+    + D  T L +A+  G+I+V   ++
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 7e-10
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
            + AS   M K+G TPL VA    G + VA+ L+E  A+ NA   G  G TPLH A    
Sbjct: 120 EKEASQACMTKKGFTPLHVAAK-YGKVRVAELLLERDAHPNA--AGKNGLTPLHVAVHHN 176

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
               V+LLL  G +      + +T L +A  +  + V R++  +       
Sbjct: 177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 8e-10
 Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 32/148 (21%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
             AG  +  + L    A +    K+ +TPL  A    G  N+ K L+E  AN N     G
Sbjct: 41  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLLLENNANPNLATTAG 99

Query: 85  R-------------------------------GGTPLHHAAKRGLEPTVRLLLSCGANAL 113
                                           G TPLH AAK G      LLL   A+  
Sbjct: 100 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 159

Query: 114 VRNDDCHTALGVARIKGHINVVRAIESH 141
               +  T L VA    ++++V+ +   
Sbjct: 160 AAGKNGLTPLHVAVHHNNLDIVKLLLPR 187

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 43/191 (22%), Positives = 62/191 (32%), Gaps = 32/191 (16%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G V     L  + A      K G TPL VA      +++ K L+  G + ++ 
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH-HNNLDIVKLLLPRGGSPHSP 194

Query: 81  RPGGR-------------------------------GGTPLHHAAKRGLEPTVRLLLSCG 109
              G                                G TPLH AA+ G    V LLLS  
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 254

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 169
           AN  + N    T L +   +GH+ V   +  H        R  Y P  + +    +   K
Sbjct: 255 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 314

Query: 170 IWVVVIPCGTA 180
             +       A
Sbjct: 315 FLLQHQADVNA 325

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 2e-09
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + +  L S+ A+    +K G TPL +     G + VA  LI+ G  ++A 
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDAT 293

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              G   TPLH A+  G    V+ LL   A+   +    ++ L  A  +GH ++V  +  
Sbjct: 294 TRMGY--TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

Query: 141 H 141
           +
Sbjct: 352 N 352

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.5 bits (174), Expect = 3e-14
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 4/110 (3%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           +D +  L +    ++ +  E      +A   +G ++V   L EL                
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENYQAFRLAAE-NGHLHVLNRLCELAPTEIMAMIQAENYHA 164

Query: 90  LHHAAKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVR 136
              AA+ G    +  L          +++ ++ +     A  +GH NV+ 
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.1 bits (155), Expect = 9e-12
 Identities = 16/147 (10%), Positives = 40/147 (27%), Gaps = 6/147 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM--DSGL 63
            +++         E + Q +        R  +   +       + +    VA +   S  
Sbjct: 46  EAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA 105

Query: 64  INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH--T 121
           ++    L+     +   +           AA+ G    +  L       ++         
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENY--QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH 163

Query: 122 ALGVARIKGHINVVRAIESHICYFCGW 148
           A  +A   GH++V+  +          
Sbjct: 164 AFRLAAENGHLHVLNRLCELAPTEATA 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPGGRG 86
           + +   SL  +  +    + +      +  V + L    A+ N          ++ G + 
Sbjct: 32  ISANELSLMTLSYKEAIHIFLPG-TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKS 90

Query: 87  GTPLHHAAKRGLEP---TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                 AA  G      T+ LLL+      V   + + A  +A   GH++V+  +   
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.2 bits (124), Expect = 6e-08
 Identities = 19/143 (13%), Positives = 35/143 (24%), Gaps = 26/143 (18%)

Query: 28  GDVDAIRALRSQGASLEWMDKE--GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           G +  +  L     +      +        +A  +  L  +   L EL            
Sbjct: 137 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL-NRLCELAPTEATAMIQAE 195

Query: 86  GG-TPLHHAAKRGLEPTVRLLLSCGAN----------------------ALVRNDDCHTA 122
                   A  RG    +  LL C                          + R  + H A
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 255

Query: 123 LGVARIKGHINVVRAIESHICYF 145
             ++   G  ++V   E    ++
Sbjct: 256 FKLSNPDGVFDLVTKSECLQGFY 278

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 17/127 (13%), Positives = 30/127 (23%), Gaps = 18/127 (14%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPL------IVACMDSGLINVAKTLIELGANI---- 77
           G  + I  L      L + +              +A   + L  +         +     
Sbjct: 208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 267

Query: 78  ---NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND-----DCHTALGVARIK 129
              +    G      L       L   +R LLS      +        D +  L +A   
Sbjct: 268 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 130 GHINVVR 136
           G+     
Sbjct: 328 GNQGACA 334

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 13/100 (13%)

Query: 22  YQWVIAGDVDAIRALR--SQGASLEWMDKE-------GKTPLIVACMDSGLINVAKTLIE 72
               +    +   A +  +     + + K            LI    D  L++  + L+ 
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN-DEVLLDDIRFLLS 300

Query: 73  LGA---NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           +             G     L  A + G +    LLLS  
Sbjct: 301 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 3e-12
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 21  LYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIV---ACMDSGLINVAKTLIELGAN 76
           L      G V+ ++ L  + GA +   D  G+  LI    +  DS +  +   L++ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVV 135
           +N    G RG TPL  A ++     V+ LL          + D  TAL +A       + 
Sbjct: 212 VNV--RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 136 RAIESH 141
             +   
Sbjct: 270 ELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 2e-11
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 34  RALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93
             L   GA +    + GKTPLI+A     L  V + L +    IN       G T L  A
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND--TDSDGKTALLLA 260

Query: 94  AKRGLEPTVRLLLSCGAN 111
            +  L+    LL   GA+
Sbjct: 261 VELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
           E    LI A   +  +++ + L+E GAN+N     G G TPLH+A +   E  V LLL  
Sbjct: 4   EDNHLLIKAVQ-NEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRH 61

Query: 109 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 168
           GA+ ++R  +  T   +A I G + +++   S          +FYG +     A     +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC--DFYGFTAFMEAAVYGKVK 119

Query: 169 KIW 171
            + 
Sbjct: 120 ALK 122

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           L   V    +  ++ L  Q    +   D +GKT L++A     L  +A+ L + GA+ + 
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 9e-05
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 18  DELLYQWVIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGAN 76
           + LL + V   DVD ++ L   GA++ + ++E G TPL  A       ++ +  + L   
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSREDIVE--LLLRHG 62

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            +       G TP   AA  G    ++L LS GA+    +    TA   A + G +  ++
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 137 AIESHICYFCGW 148
            +          
Sbjct: 123 FLYKRGANVNLR 134

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 9e-04
 Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 45/179 (25%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
            +   ++++         IAG V  ++   S+GA +   D  G T  + A +   +  + 
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 68  KTL-------IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL-------------- 106
                     +      +  R    G T L  AA++G    +++LL              
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 107 ------------------------SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                                     GA+  VR +   T L +A  K H+ +V+ +   
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 1/143 (0%)

Query: 7   SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINV 66
            +N ++Q+   +  L + +     +   +L +  ++                 DS L  V
Sbjct: 29  VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 88

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
                    N+N       G TPLH          V+ L+  G+N L  ++   + L  A
Sbjct: 89  NDAFPNTQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

Query: 127 RIKGHINVVRAIESHICYFCGWL 149
               +       E+ + Y    L
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCL 170

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.8 bits (133), Expect = 4e-09
 Identities = 15/98 (15%), Positives = 31/98 (31%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
           D+     ++ Q   ++    E ++       +     +    ++             G T
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 89  PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
            L+ AA+ G    V  LL  GA+  + N      +   
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.1 bits (149), Expect = 3e-11
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 44  EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVR 103
           +    +G+T L  A   S +  V   + E G+N    +    G TP+  AA+ G    V 
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK--DKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            L+  GA+    +   HTA  +A+   H N+V   +
Sbjct: 239 YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 39  QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL 98
           +G++ +  D++GKTP+++A    G I V   LI+ GA++ A        T    A     
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQ-EGRIEVVMYLIQQGASVEA--VDATDHTARQLAQANNH 266

Query: 99  EPTVRLLLSC 108
              V +   C
Sbjct: 267 HNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 51  KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL---- 106
           ++P+ +    +G   + + +     NI   R      T LH  A          L+    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPR---HNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 107 ----SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
               + GA+    + D +T L +A +     +V  +         +
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 103

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           +      G ++ +  L  QGAS+E +D    T   +A   +   N+      
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA-NNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 10/152 (6%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-------DSGLINVAKTLIELGANINA 79
           AG       +  +  ++    +  +T L            +  +++ AK  I  GA++N 
Sbjct: 11  AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN- 68

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
                   TPL  A        V  L+  GA+  + N    +AL  A       ++  + 
Sbjct: 69  -AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 127

Query: 140 SHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171
           +                    +      R   
Sbjct: 128 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 159

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.0 bits (149), Expect = 3e-11
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 32  AIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91
           A + L S   +     K G T L V     G   V K LI+   ++N     G   TPLH
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHV-AAAKGYTEVLKLLIQARYDVNIKDYDGW--TPLH 237

Query: 92  HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR--IKGHINVVRA 137
            AA  G E   R+L+    +    N    TA  VA   I G++  ++ 
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 18/70 (25%), Positives = 27/70 (38%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            G     A   G    V  LL  GA+    N D  TAL  A I  ++++V+ +  +    
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 146 CGWLREFYGP 155
                E + P
Sbjct: 100 NQPDNEGWIP 109

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + ++ L      +   D +G TPL  A    G     + L+E   ++ A 
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH-WGKEEACRILVENLCDMEA- 260

Query: 81  RPGGRGGTPLHHAAK 95
                G T    A +
Sbjct: 261 -VNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           R    GGT LH AA +G    ++LL+    +  +++ D  T L  A   G     R +  
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 141 H 141
           +
Sbjct: 254 N 254

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 5e-11
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           +  + +  +    L+    AG  + ++AL  +GA +  +++ G TPL           +A
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY-AASKNRHEIA 119

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             L+E GAN +A        T +H AA +G    + +LL   A+  +++ + +T L +A 
Sbjct: 120 VMLLEGGANPDA--KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 177

Query: 128 IKGHINVVRAIESH 141
            +  +   + + S 
Sbjct: 178 DEERVEEAKLLVSQ 191

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 1e-10
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+        +    L   GA+ +  D    T +       G + +   L+   A+ N  
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHR-AAAKGNLKMIHILLYYKASTNI- 164

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
                G TPLH A         +LL+S GA+  + N +  T L VA+  G   +++ +
Sbjct: 165 -QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-09
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 37/172 (21%)

Query: 20  LLYQWVIAGDVDAIR-ALRSQGASLEWMDKEGKTPLIVAC-------------------- 58
           ++     +G ++ ++ ++ +  +     D++ +T L  AC                    
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 59  ------------MDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
                         +G   + K L+  GA +NA      G TPLH+AA +       +LL
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA--VNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFL 158
             GAN   ++    TA+  A  KG++ ++  +          +++  G + L
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHIL--LYYKASTNIQDTEGNTPL 173

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 9e-10
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 453 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 508
             +   C IC E   +    PCGH+       S  +++   CP CR +I     + 
Sbjct: 20  GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 2/112 (1%)

Query: 43  LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHAAKRGLEPT 101
             ++ ++G T L +A +          L+   A           G T LH AA  G   T
Sbjct: 2   FGYVTEDGDTALHLAVI-HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 102 VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFY 153
           V  L + GA  LV     HTAL +A           +            + Y
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 4e-07
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 58  CMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA 110
            +++   +V + L++ GA+  A   GGR  TPL  A  R      RLL + GA
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGR--TPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 8e-07
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
                    + +           LE  + +G TPL VA +      V             
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
               GR  TPLH A +      + LLL  GA+   R     T LG A ++ +  + R + 
Sbjct: 188 EPTCGR--TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 140 SH 141
           +H
Sbjct: 246 AH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           + +   +     +       L+  V A     +  L   GA        G+TPL  A + 
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL- 234

Query: 61  SGLINVAKTLIELGA 75
                +A+ L   GA
Sbjct: 235 RPNPILARLLRAHGA 249

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 49.9 bits (119), Expect = 9e-09
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 456 SSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 506
           +  C IC E P   +  +PC H   C  C++    +   CP+C+  +  V+ 
Sbjct: 5   AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           ++   +       L+  V     + ++ L  +GA ++ +D +     ++  +++  +++ 
Sbjct: 101 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 160

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           + L++ GAN+NA    G   + LH A+ RGL P VR L+  GA++ ++N    T L VAR
Sbjct: 161 QLLLQHGANVNAQMYSGS--SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 218

Query: 128 IKGHINVVR 136
            +  I+++R
Sbjct: 219 SRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIEL----GANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
           +G TPL +A +  G +     L+ L    G  ++ Y       TPLH A    L   VRL
Sbjct: 2   DGDTPLHIAVV-QGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRL 58

Query: 105 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
           L++ GA+ +  +    TA  +A        +RA+          
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 102

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
            N + +       L           +  L +  A +   D  GKT L  A   +    V 
Sbjct: 81  TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVN 140

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             L+    + N      +  TPL  AA+ G     + LL   AN  + +        VA 
Sbjct: 141 ILLMH---HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVAS 197

Query: 128 IKGHINVVRAIE 139
            + H ++VR ++
Sbjct: 198 ERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           V   L+  GA +NA      G T LH AA+       + LL  GA+A  +++   T L  
Sbjct: 4   VISDLLAQGAELNA-TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 126 ARIKGHINVVRAIESHICYFCGW 148
           A     + V + +  +       
Sbjct: 63  AVAADAMGVFQILLRNRATNLNA 85

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
           C  C         +PC H   C  CL     +   CP+C+   
Sbjct: 9   CQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQ---CPICQAPW 47

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 10/134 (7%)

Query: 16  SKDELLYQWVIAGDVDAIRALRSQGASL------EWMDKEGKTPLIVACM--DSGLINVA 67
           +K   L + V   D+  +    + G  L          +  +T L +A    D   +++ 
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             L++   N++     G                 ++LLL   A+  + N+   T L +A+
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCC--LTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 128 IKGHINVVRAIESH 141
              H +    +   
Sbjct: 123 RLKHEHCEELLTQA 136

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 9e-07
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 450 VKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKIN 502
                 S SC IC     +     C H+  C  C+   +K     CP CR    
Sbjct: 17  PAHFVKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCF 69

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 88  TPLHHAAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146
            PLH A        V+ LL S  +  L ++ D    L  +       +   + S +    
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 147 GW 148
             
Sbjct: 62  LD 63

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 45  WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
           W DK+G TPL  A  +         + + GA  +      +G      A    +    + 
Sbjct: 167 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--VDNKGAKAEDVALNEQV---KKF 221

Query: 105 LLSCGANA 112
            L+   +A
Sbjct: 222 FLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
            PL  ACM++    V + L    + +      GR   PLH +           LLS   N
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSVSFQAHEITSFLLSKMEN 59

Query: 112 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
             + +    +      I   +  +  ++S        
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP 96

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 6/135 (4%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
            + ++        L+  V     +  + L   GAS+   DK  + PL  A     L  + 
Sbjct: 96  PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 155

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVA 126
                  + +       +G TPL HA   G      LL+   GA   + ++    A  VA
Sbjct: 156 LLCGLGKSAV--NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

Query: 127 RIKGHINVVRAIESH 141
               +  V +   ++
Sbjct: 214 L---NEQVKKFFLNN 225

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 13/125 (10%), Positives = 26/125 (20%), Gaps = 33/125 (26%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLE--------------------------------WMD 47
           LL    + G+ D ++ +  +                                        
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 48  KEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHAAKRGLEPTVRLLL 106
                  +        + V K L+E GA + A      +         + G     + L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 107 SCGAN 111
                
Sbjct: 124 GVQEK 128

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 458 SCVICWEAPVEGACVPCGHM--AGCMSCLSEIKAKKGDCPVCRTKINQ 503
            C IC E   E     C H+    CM  L   K     CP+C+  I +
Sbjct: 23  ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 458 SCVICWEAPVEGACV----PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 503
            C +C E             CG+             + G CP CR    +
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 38.3 bits (89), Expect = 9e-05
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 452 DDGSSSSCVICWEAPVEGA----CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 501
           DDG    C +C     +G        CGH      C+         CP+CR  +
Sbjct: 3   DDGVE--CAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV 53

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G T LH A        V LLL CGA+        ++   +   +    + + +   
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 45  WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
                G+T L +A        V+  L   GA++N     G   +P      R      + 
Sbjct: 140 QEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGY--SPYQLTWGRPSTRIQQQ 196

Query: 105 LLSCGANALVRNDDC 119
           L       L    + 
Sbjct: 197 LGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 86  GGTPLHHAAKRG----LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G + LH A            +R +    A    +N+   T L +A I     +  A+   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 142 ICYFCGW 148
            C     
Sbjct: 62  GCDPELR 68

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 459 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLYT 509
           C I  + P      P        S L +     G+ P+    +   +++ +  
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 55

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 15/62 (24%), Positives = 20/62 (32%)

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146
           G  L  AA RG    +  LL    N   +N    TAL V ++       R +        
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 147 GW 148
             
Sbjct: 62  KD 63

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 11/63 (17%), Positives = 20/63 (31%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            G  L  AA+ G +  VR+L++ GA               A+          + + +   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 146 CGW 148
              
Sbjct: 62  ART 64

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 457 SSCVICWEAPVEGACV-----PCGHMAGCMSCLSEI-KAKKGDCPVCRTKINQ 503
             C  C         +      CGH   C SC+  +     G+CP C T + +
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 85  RGGTPLHHAAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
           R G  L  AA RG    VR LL     +    N    TAL V         +  ++    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 144 YFCGW 148
                
Sbjct: 61  PNVQD 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	510
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.09
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.0
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.99
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.98
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.9
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.9
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.84
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.79
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.74
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.73
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.6
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.54
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.52
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.47
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.32
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.37
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	91.0

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6e-33  Score=262.87  Aligned_cols=196  Identities=20%  Similarity=0.162  Sum_probs=177.8

Q ss_pred             hhcCCchHHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCCh
Q 010439           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (510)
Q Consensus        12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~T   88 (510)
                      ..+++|+||||+||+.|+.++|++||++|++   ++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|+|
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~i~~~--d~~g~t   80 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGHT   80 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSCC
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhh-ccccccccccccccccccc--ccccch
Confidence            4578999999999999999999999999988   667788999999999998 9999999999999999998  899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCC-----------------------------------------------CCccCCCCCCc
Q 010439           89 PLHHAAKRGLEPTVRLLLSCGA-----------------------------------------------NALVRNDDCHT  121 (510)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~ga-----------------------------------------------d~~~~d~~g~T  121 (510)
                      |||+|+..++.+++++|++.+.                                               +++.+|..|.|
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            9999999999999999986542                                               12557889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccCh
Q 010439          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP  201 (510)
Q Consensus       122 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~  201 (510)
                      |||+|+..++.+++++|++++++.+. .++..|.|||| +|+..++.+++++|+++|++++.++..+.+|++.|+..++.
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~TpL~-~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~  238 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGADLNK-PEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP  238 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             cccccccccccccccchhcccccccc-ccccccccccc-ccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999998872 45778999999 99999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhc
Q 010439          202 RAVIALWKAKI  212 (510)
Q Consensus       202 ~~i~~l~~~~~  212 (510)
                      ..+..|+....
T Consensus       239 ~i~~~Ll~~Ga  249 (255)
T d1oy3d_         239 ILARLLRAHGA  249 (255)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            88776665444

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-32  Score=251.82  Aligned_cols=192  Identities=21%  Similarity=0.182  Sum_probs=180.4

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g   86 (510)
                      +...+.+|..|+||||+|+..|+.+++++|+..+.+....+..+.+++++++.. ++.+++++|+++|++++.+  |..|
T Consensus        27 ~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Ll~~~~d~~~~--d~~g  103 (223)
T d1uoha_          27 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GRDEIVKALLGKGAQVNAV--NQNG  103 (223)
T ss_dssp             GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred             CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc-cccchhHHHhccCceeEee--CCCC
Confidence            345678899999999999999999999999999999988999999999999998 9999999999999999998  8999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcC
Q 010439           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (510)
Q Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~  166 (510)
                      +||||+|+.+|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+.+++  .+|.+|.|||| +|+..+
T Consensus       104 ~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~--~~d~~g~TpL~-~Aa~~g  180 (223)
T d1uoha_         104 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN--IQDTEGNTPLH-LACDEE  180 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HHHHTT
T ss_pred             CchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee--eccCCCCceec-cccccC
Confidence            999999999999999999999999999999999999999999999999999999999999  89999999999 999999


Q ss_pred             CHHHHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (510)
Q Consensus       167 ~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~  205 (510)
                      +.+++++|+++|++++.+|..+++|++.|. .++...+.
T Consensus       181 ~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~  218 (223)
T d1uoha_         181 RVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILK  218 (223)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHH
T ss_pred             cHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHh
Confidence            999999999999999999999999999874 44444333

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-31  Score=246.41  Aligned_cols=208  Identities=17%  Similarity=0.200  Sum_probs=191.8

Q ss_pred             chHHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHH
Q 010439           17 KDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (510)
Q Consensus        17 g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~   95 (510)
                      .++.|+.+|..|+++.|+.+|. .+.+++.+|..|+||||+||.. |+.+++++|+..+.+....  +..+.+++++++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~-g~~e~~~~l~~~~~~~~~~--~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCSCCC--CTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHh-hhhcccccccccccccccc--ccccccccccccc
Confidence            3578999999999999987765 5678999999999999999998 9999999999999998887  7889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (510)
Q Consensus        96 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll  175 (510)
                      .++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++.+|.|||| +|+..++.+++++|+
T Consensus        80 ~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~--~~~~~~~t~L~-~a~~~~~~~~~~~L~  156 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMH-RAAAKGNLKMIHILL  156 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred             ccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCccch-hhhhcCCcchhhhhc
Confidence            999999999999999999999999999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439          176 PCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (510)
Q Consensus       176 ~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~  240 (510)
                      ..+.+++.++..+.++++.++..+....+..|+.        .|++  +++.|+.|+|||++|..
T Consensus       157 ~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~--------~Gad--~~~~d~~g~tpl~~A~~  211 (223)
T d1uoha_         157 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS--------QGAS--IYIENKEEKTPLQVAKG  211 (223)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCTTSCCHHHHCCT
T ss_pred             cccceeeeccCCCCceeccccccCcHHHHHHHHH--------CCCC--CCCCCCCCCCHHHHHHC
Confidence            9999999999999999999999998777665443        3556  77899999999999854

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.7e-30  Score=244.48  Aligned_cols=166  Identities=22%  Similarity=0.162  Sum_probs=151.8

Q ss_pred             hhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC-------------
Q 010439           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-------------   76 (510)
Q Consensus        10 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~-------------   76 (510)
                      .+.+|..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+.. ++.+++++|++.+..             
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  116 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQS  116 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhcc-CchHHHHHHHhhccchhcccchhhhhHH
Confidence            556788999999999999999999999999999999999999999999987 999999999764332             


Q ss_pred             ----------------------------------ccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC-CCCCCc
Q 010439           77 ----------------------------------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR-NDDCHT  121 (510)
Q Consensus        77 ----------------------------------~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~g~T  121 (510)
                                                        ++.+  |..|+||||+|+..++.+++++|++++++.+.. +..|.|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~--d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~T  194 (255)
T d1oy3d_         117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE--NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT  194 (255)
T ss_dssp             ---------------------------CCCGGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             hhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccc--cccCcccccccccccccccccchhcccccccccccccccc
Confidence                                              2222  677999999999999999999999999998864 578999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCC
Q 010439          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (510)
Q Consensus       122 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~  181 (510)
                      |||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++||+.
T Consensus       195 pL~~A~~~~~~~~v~~Ll~~gadin--~~d~~g~t~L~-~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         195 PLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCC
T ss_pred             cccccccccHHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999  89999999999 999999999999999999963

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.8e-29  Score=242.13  Aligned_cols=178  Identities=23%  Similarity=0.269  Sum_probs=166.6

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHH
Q 010439           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (510)
Q Consensus        14 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A   93 (510)
                      +.+|.|+||.||..|++++|++||++|+|+|.+|.+|.||||+|+.. |+.+++++|+++|++.+..  +..+.||||++
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~-g~~eiv~~Ll~~~~~~~~~--~~~~~~~L~~a  113 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHAA  113 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhc-CCceeeeeecccccccccc--ccccccccccc
Confidence            45678999999999999999999999999999999999999999997 9999999999999999887  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCc------------------------------------------------------------
Q 010439           94 AKRGLEPTVRLLLSCGANAL------------------------------------------------------------  113 (510)
Q Consensus        94 ~~~g~~~~v~~Ll~~gad~~------------------------------------------------------------  113 (510)
                      +..++.++++.|+++|+..+                                                            
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccc
Confidence            99999999999999876432                                                            


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcccccccc
Q 010439          114 VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY  193 (510)
Q Consensus       114 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~  193 (510)
                      ..+..|.||||+|+..|+.+++++|+++|++++  .++.+|.|||| +|+..|+.+++++|+++|+|++.+|..|++|++
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din--~~~~~g~TpL~-~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~  270 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAFD  270 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             cccCCCCChhhHHHHcCChhhhcccccceeccc--ccccCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            245678899999999999999999999999999  89999999999 999999999999999999999999999999999


Q ss_pred             cccc
Q 010439          194 PSLQ  197 (510)
Q Consensus       194 ~a~~  197 (510)
                      .|.+
T Consensus       271 ~A~e  274 (291)
T d1s70b_         271 VADE  274 (291)
T ss_dssp             SCCS
T ss_pred             HHHH
Confidence            9975

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-29  Score=220.14  Aligned_cols=153  Identities=23%  Similarity=0.288  Sum_probs=147.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCC
Q 010439           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (510)
Q Consensus        19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~   98 (510)
                      ++||+||..|+.++|++||++|+|+|.+|..|+||||+|+ . ++.+++++|+++|++++.+  +..|.++|+.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~-~~~ei~~~Ll~~~a~~~~~--~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-L-GNPEIARRLLLRGANPDLK--DRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-S-SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-c-ccccccccccccccccccc--cccCcccccccccccc
Confidence            8999999999999999999999999999999999999886 5 8999999999999999998  8999999999999999


Q ss_pred             HHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccc-cccccccccCCCCHHHHHhhhcCCHHHHHHHhhC
Q 010439           99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC-YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (510)
Q Consensus        99 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga-~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~  177 (510)
                      .++++.|+..+.+++..|..|.+|||+|+..++.+++++|+++++ +++  .+|.+|.|||| +|+..++.+++++|+++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~d~~g~TpL~-~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999997 677  89999999999 99999999999999998


Q ss_pred             C
Q 010439          178 G  178 (510)
Q Consensus       178 g  178 (510)
                      |
T Consensus       156 G  156 (156)
T d1ihba_         156 G  156 (156)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=235.38  Aligned_cols=191  Identities=22%  Similarity=0.256  Sum_probs=167.5

Q ss_pred             CchHHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHH
Q 010439           16 SKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh   91 (510)
                      +|.||||+|+..|+.    +++++++..|+++|.+|.+|+||||+||.. |+.+++++|+++|++++..  |..|+||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~-~~~~iv~~L~~~g~d~~~~--d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccc-ccccccccccccccccccc--ccccccccc
Confidence            689999999999996    455667778999999999999999999997 9999999999999999998  899999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCC------ccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439           92 HAAKRGLEPTVRLLLSCGANA------LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (510)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~gad~------~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~  165 (510)
                      +++..++.+++++|+..+.+.      ......|.||||+|+..++.+++++|+..|+.++. ..+.+|.|||| +|+..
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~-~~~~~G~T~L~-~A~~~  155 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRTALH-LAVDL  155 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHH-HHHHT
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccc-ccccCCCCccc-ccccc
Confidence            999999999999999987553      33455789999999999999999999999998872 44567999999 99999


Q ss_pred             CCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhh
Q 010439          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK  211 (510)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~  211 (510)
                      |+.+++++|+++|+|++.++..|.+|++.+...+..+.+..+.+..
T Consensus       156 g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         156 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             ccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999888777655443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=2.3e-29  Score=240.66  Aligned_cols=197  Identities=16%  Similarity=0.092  Sum_probs=171.6

Q ss_pred             cccChhhhc-CCchHHHHHHHHcCCHHHHHHH--------HHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC
Q 010439            6 NSMNQHQQR-QSKDELLYQWVIAGDVDAIRAL--------RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN   76 (510)
Q Consensus         6 ~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~   76 (510)
                      .+.+.|..+ ..|+||||+||..|+.++|+.|        +++|+|+|.+|.+|+||||+|+.. |+.+++++|+++|+|
T Consensus        21 ~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~Gad   99 (277)
T d2fo1e1          21 TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGAD   99 (277)
T ss_dssp             STTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCC
T ss_pred             HhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccc-ccccccccccccccc
Confidence            344555555 4599999999999999998776        567999999999999999999998 999999999999999


Q ss_pred             ccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCC----------------------------------------------
Q 010439           77 INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA----------------------------------------------  110 (510)
Q Consensus        77 ~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga----------------------------------------------  110 (510)
                      ++.+  |..|.|||++|+..++.+++++++..+.                                              
T Consensus       100 ~n~~--~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (277)
T d2fo1e1         100 PTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA  177 (277)
T ss_dssp             SCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred             cccc--cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccc
Confidence            9998  8999999999999999999888865420                                              


Q ss_pred             -CCccCCCCCCcHHHHHHHcCCHHHHHHHH-hccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccc
Q 010439          111 -NALVRNDDCHTALGVARIKGHINVVRAIE-SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRF  188 (510)
Q Consensus       111 -d~~~~d~~g~TpL~~A~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~  188 (510)
                       ..+..+..|+||||+++..++.+++++++ ..+.+++  .+|..|.|||| +|+..++.+++++|+++|+|++.+|..|
T Consensus       178 ~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~iv~~Ll~~gadin~~d~~G  254 (277)
T d2fo1e1         178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTPIM-LAAQEGRIEVVMYLIQQGASVEAVDATD  254 (277)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCSSCCCSSS
T ss_pred             ccccccccCCCCcccccccccccccccccccccccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCcCCCCCcCCCC
Confidence             01345668999999999999999998754 6677777  89999999999 9999999999999999999999999999


Q ss_pred             cccccccccccChHHHHHHH
Q 010439          189 ELVIYPSLQDVQPRAVIALW  208 (510)
Q Consensus       189 ~~~l~~a~~~~~~~~i~~l~  208 (510)
                      .++++.|++.++...+..|.
T Consensus       255 ~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         255 HTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHH
Confidence            99999999999877766543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.6e-28  Score=225.80  Aligned_cols=210  Identities=17%  Similarity=0.113  Sum_probs=183.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC-CCCCCChHHHHHHH
Q 010439           18 DELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-PGGRGGTPLHHAAK   95 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~-~d~~g~TpLh~A~~   95 (510)
                      ++|||+||..|+.++|+.||+. +.+++.+|.+|+||||+|+.. |+.+++++|+++|++++..+ .+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHc-CCccccchhhhhhcccccccccccccccccccccc
Confidence            4799999999999999998884 578999999999999999998 99999999999999987642 26689999999999


Q ss_pred             cCCHHHHHHHHHCCCCC--ccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010439           96 RGLEPTVRLLLSCGANA--LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (510)
Q Consensus        96 ~g~~~~v~~Ll~~gad~--~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~  173 (510)
                      .+..++++.++..+.+.  ...+..+.|+|+.++..++.+++++|+..|.+.+  .+|..|.|||| +|+..++.+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~  156 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIEL  156 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccc--ccCCCCCCccc-hhhhccccccccc
Confidence            99999999999887654  4567788999999999999999999999999988  88999999999 9999999999999


Q ss_pred             HhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhc
Q 010439          174 VIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (510)
Q Consensus       174 Ll~~g-a~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~  240 (510)
                      |++.+ .+++.++..+.++++.++..++...+..|+...       |.+  ++++|+.|+|||++|..
T Consensus       157 Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~-------gad--~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         157 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY-------GAE--YDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-------CCC--SCCCCTTSCCTGGGCSC
T ss_pred             ccccccccccccccccCCchhhhcccccHHHHHHHHHhc-------CCC--CCCcCCCCCCHHHHHhh
Confidence            99987 677888889999999999999888777655321       345  77789999999999874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.4e-28  Score=211.17  Aligned_cols=151  Identities=26%  Similarity=0.308  Sum_probs=143.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcC
Q 010439           19 ELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (510)
Q Consensus        19 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g   97 (510)
                      +.||.||..|++++|+.||++ ++++|.+|..|+||||+|+ . ++.+++++|++++++++..  +..|.+||++++..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~-~~~~~v~~Ll~~~~~~~~~--~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-F-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-T-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-c-ccccccccccccccccccc--ccccccccccccccc
Confidence            459999999999999999985 7899999999999999987 4 7789999999999999998  889999999999999


Q ss_pred             CHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhC
Q 010439           98 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (510)
Q Consensus        98 ~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~  177 (510)
                      +.+++++++++|++++.+|..|.||||+|+..|+.+++++|+ .|++++  .+|.+|+|||| +|+..|+.+++++|+++
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH--RRDARGLTPLE-LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT--CCCTTSCCHHH-HHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-cccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhh
Confidence            999999999999999999999999999999999999999887 689998  89999999999 99999999999999976

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.7e-27  Score=207.00  Aligned_cols=151  Identities=24%  Similarity=0.258  Sum_probs=143.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHc
Q 010439           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (510)
Q Consensus        17 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~   96 (510)
                      ..||||.||+.|+.++|++||++|++++ .|..|+||||+|+.. ++.++++.++......+..  +..+.+++++++..
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   77 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccc-ccccccccccccccccccc--cccccccccccccc
Confidence            4599999999999999999999999987 689999999999998 9999999999998887776  78889999999999


Q ss_pred             CCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHH
Q 010439           97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (510)
Q Consensus        97 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~L  174 (510)
                      .+.+++++|+.+|++++.+|..|+||||+|+..|+.++|++|+++|++++  .+|.+|.|||| +|+.+|+.+++++|
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~--~~d~~g~Tpl~-~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCc--ccCCCCCCHHH-HHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999  89999999999 99999999999976

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-27  Score=226.67  Aligned_cols=191  Identities=20%  Similarity=0.166  Sum_probs=140.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC-------------
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYR-------------   81 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~-------------   81 (510)
                      +++|+||+|+++|++++|++||++|+++|.++ ..|.||||+|+.. |+.+++++|++.+.+.+..+             
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~-~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHc-CCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            46899999999999999999999999999875 4799999999997 99999999999877664432             


Q ss_pred             -------------------------------------------------------------CCCCCChHHHHHHHcCCHH
Q 010439           82 -------------------------------------------------------------PGGRGGTPLHHAAKRGLEP  100 (510)
Q Consensus        82 -------------------------------------------------------------~d~~g~TpLh~A~~~g~~~  100 (510)
                                                                                   .+..|.||||+|+.+|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                                                                         1223899999999999988


Q ss_pred             HHHHHHHC-CCCCccCCCCCCcHHHHHHHc----CCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHh
Q 010439          101 TVRLLLSC-GANALVRNDDCHTALGVARIK----GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (510)
Q Consensus       101 ~v~~Ll~~-gad~~~~d~~g~TpL~~A~~~----g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll  175 (510)
                      ++++|+++ |++++.++..|.++++.+...    +..+++++|+++|++++  .++.+|.|||| +|+..++.+++++|+
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n--~~~~~g~t~L~-~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN--VRGERGKTPLI-LAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC--ccCCCCCCccc-hhhhcCcHHHHHHHH
Confidence            88888864 677766666666665554432    22356666666666666  56666666666 666666666666666


Q ss_pred             h-CCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010439          176 P-CGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  210 (510)
Q Consensus       176 ~-~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~  210 (510)
                      + .|++++.++..|.+|++.|++.++...+..|+..
T Consensus       240 ~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~  275 (285)
T d1wdya_         240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  275 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            5 3666666666666666666666666666555443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.4e-27  Score=218.37  Aligned_cols=188  Identities=18%  Similarity=0.092  Sum_probs=173.1

Q ss_pred             ccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcc---cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCC
Q 010439            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEW---MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPG   83 (510)
Q Consensus         7 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d   83 (510)
                      ....+.+|.+|.||||+|+..|+.++|++||++|++++.   .+..|.||+|+++.. +..++++.++..+.+.+....+
T Consensus        24 ~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  102 (229)
T d1ixva_          24 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKIT  102 (229)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHSSSSCCCTTCCC
T ss_pred             CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            456678899999999999999999999999999999875   467899999999998 9999999999999877665447


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhcc-ccccccccccCCCCHHHHHh
Q 010439           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALA  162 (510)
Q Consensus        84 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~t~L~~~A  162 (510)
                      ..+.|+|++++..++.+++++|++.|.+.+.+|..|+||||+|+..|+.+++++|++++ .+++  .+|.+|.|||| +|
T Consensus       103 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in--~~d~~g~TpLh-~A  179 (229)
T d1ixva_         103 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HA  179 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HH
T ss_pred             cccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccccc--ccccccCCchh-hh
Confidence            88999999999999999999999999999999999999999999999999999999998 5777  89999999999 99


Q ss_pred             hhcCCHHHHHHHhh-CCCCCCCCCccccccccccccc
Q 010439          163 PQLMSRKIWVVVIP-CGTANPSKPLRFELVIYPSLQD  198 (510)
Q Consensus       163 ~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~l~~a~~~  198 (510)
                      +..++.+++++|++ .|++++.++..|.++++.+.+.
T Consensus       180 ~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             cccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            99999999999996 5999999999999999998854

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.2e-27  Score=214.76  Aligned_cols=182  Identities=20%  Similarity=0.202  Sum_probs=163.0

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHH
Q 010439           15 QSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (510)
Q Consensus        15 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpL   90 (510)
                      ++|+||||+||..|+.++|+.|++    .|+++|.+|..|+||||+|+.. |+.+++++|+++|++++..  +..|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~-~~~~iv~~Ll~~ga~~~~~--~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcc-ccccccccccccccccccc--cccccccc
Confidence            479999999999999999998875    8999999999999999999998 9999999999999999988  78889999


Q ss_pred             HHHHHcCCHHHHHHHHHCCC-------------------------------------CC-ccCCCCCCcHHHHHHHcCCH
Q 010439           91 HHAAKRGLEPTVRLLLSCGA-------------------------------------NA-LVRNDDCHTALGVARIKGHI  132 (510)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~ga-------------------------------------d~-~~~d~~g~TpL~~A~~~g~~  132 (510)
                      +.|...++.++++.+.....                                     +. ...+..|.++|+.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            99998888888777665321                                     11 22455789999999999999


Q ss_pred             HHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChH
Q 010439          133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR  202 (510)
Q Consensus       133 ~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~  202 (510)
                      .+++.++++|.+.+  .+|..|.|||| +|+..|+.+++++|+++|+|++.++..|.+|++.|.+.++.+
T Consensus       158 ~~~~~~~~~~~~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         158 SMVQLLLQHGANVN--AQMYSGSSALH-SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             HHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             hhhhhhhhhccccc--cccccCcchHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcc
Confidence            99999999999998  89999999999 999999999999999999999999999999999998876543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-27  Score=237.27  Aligned_cols=206  Identities=23%  Similarity=0.175  Sum_probs=178.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCC
Q 010439           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (510)
Q Consensus        19 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~   98 (510)
                      ||||+||..|+.++|++||++|+++|..|..|+||||+||.. |+.+++++||++|++++.+  +..|+||||+|+..|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~gadi~~~--~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTSCCHHHHHHHHTC
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHHHcCC
Confidence            899999999999999999999999999999999999999998 9999999999999999998  8999999999999999


Q ss_pred             HHHHHHHHHCCCC---------------------------------CccCCCCCCcHHHHHHHcCCHHHHHHHHhccccc
Q 010439           99 EPTVRLLLSCGAN---------------------------------ALVRNDDCHTALGVARIKGHINVVRAIESHICYF  145 (510)
Q Consensus        99 ~~~v~~Ll~~gad---------------------------------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~  145 (510)
                      .+++++|+..+.+                                 .+..+..+.++|+.|+..++.++++.|+++|+++
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~  158 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP  158 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999876543                                 2456778999999999999999999999999999


Q ss_pred             cccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCCCceE
Q 010439          146 CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLT  225 (510)
Q Consensus       146 ~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~  225 (510)
                      +  ..+.+|.+||| +|+..++.+++++|+.+|++++..+..+.++++.............++.....          ..
T Consensus       159 ~--~~~~~~~~~L~-~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~----------~~  225 (408)
T d1n11a_         159 N--AAGKNGLTPLH-VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS----------AN  225 (408)
T ss_dssp             T--CCCSSCCCHHH-HHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TT
T ss_pred             C--cCCCcCchHHH-HHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccc----------cc
Confidence            9  88999999999 99999999999999999999999998999998888777776665554333221          12


Q ss_pred             EecCCCcceeeehhc
Q 010439          226 IYDQATKIRYKFASA  240 (510)
Q Consensus       226 ~~d~~~~t~l~~a~~  240 (510)
                      ..+..+.|++++++.
T Consensus       226 ~~~~~~~t~l~~a~~  240 (408)
T d1n11a_         226 AESVQGVTPLHLAAQ  240 (408)
T ss_dssp             CCCTTCCCHHHHHHH
T ss_pred             ccCCCCCCHHHHHHH
Confidence            234445666666653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-27  Score=219.84  Aligned_cols=171  Identities=23%  Similarity=0.150  Sum_probs=155.6

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCcccc----C
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY----R   81 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~----~   81 (510)
                      ++.++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.++++.|+..+.+....    .
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~  106 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKA  106 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred             CCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccccc-ccccccchhhhhcccccccccccc
Confidence            3567788999999999999999999999999999999999999999999999998 9999999999987653332    1


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHH
Q 010439           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEA  160 (510)
Q Consensus        82 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~  160 (510)
                      ....|.||||+|+..++.+++++|+..|++++..+ .+|.||||+|+..|+.+++++|+++|+|++  .+|.+|+|||| 
T Consensus       107 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~--~~~~~G~tpl~-  183 (221)
T d1iknd_         107 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-  183 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-
T ss_pred             cccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc--ccCCCCCCHHH-
Confidence            14568999999999999999999999999988776 579999999999999999999999999999  99999999999 


Q ss_pred             HhhhcCCHHHHHHHhhCCCC
Q 010439          161 LAPQLMSRKIWVVVIPCGTA  180 (510)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~ga~  180 (510)
                      +|+..++.+++++|++.+.+
T Consensus       184 ~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         184 LTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             GCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHCCCHHHHHHHHHcCCc
Confidence            99999999999999988764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=1.9e-26  Score=220.15  Aligned_cols=167  Identities=19%  Similarity=0.154  Sum_probs=148.4

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcC---CCccccC-
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAYR-   81 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g---a~~n~~~-   81 (510)
                      .++++|.+|.+|+||||+|+..|+.++|++||++|++++.+|..|.|||++|+.. ++.+++++++..+   ..++..+ 
T Consensus        63 ~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~~  141 (277)
T d2fo1e1          63 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDR  141 (277)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             cCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhh-cchhhhhhhhhccccccccccccc
Confidence            3678899999999999999999999999999999999999999999999999997 8888888876532   1111110 


Q ss_pred             -----------------------------------------CCCCCChHHHHHHHcCCHHHHHHHH-HCCCCCccCCCCC
Q 010439           82 -----------------------------------------PGGRGGTPLHHAAKRGLEPTVRLLL-SCGANALVRNDDC  119 (510)
Q Consensus        82 -----------------------------------------~d~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~g  119 (510)
                                                               .+..|+||||+++..++.+++++++ ..+.+++.+|..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  221 (277)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             ccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCC
Confidence                                                     2446899999999999999998754 6789999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhh
Q 010439          120 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (510)
Q Consensus       120 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~  176 (510)
                      +||||+|+..|+.++|++|+++|++++  .+|.+|+|||| +|+..|+.+++++|++
T Consensus       222 ~tpL~~A~~~g~~~iv~~Ll~~gadin--~~d~~G~T~L~-~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         222 KTPIMLAAQEGRIEVVMYLIQQGASVE--AVDATDHTARQ-LAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCSSSCCHHH-HHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999  89999999999 9999999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=1.7e-26  Score=222.48  Aligned_cols=165  Identities=25%  Similarity=0.328  Sum_probs=150.0

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC----
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR----   81 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~----   81 (510)
                      .++++|.+|.+|.||||+|+..|+.++|++|+++|.+.+..+..+.|||++|+.. ++.++++.|+++|+..+..+    
T Consensus        62 ~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~~  140 (291)
T d1s70b_          62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNSEGD  140 (291)
T ss_dssp             HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc-cccchhhcccccCcccccccccCc
Confidence            3678899999999999999999999999999999999999999999999999998 99999999999988776542    


Q ss_pred             ------------------------------------------------------CCCCCChHHHHHHHcCCHHHHHHHHH
Q 010439           82 ------------------------------------------------------PGGRGGTPLHHAAKRGLEPTVRLLLS  107 (510)
Q Consensus        82 ------------------------------------------------------~d~~g~TpLh~A~~~g~~~~v~~Ll~  107 (510)
                                                                            .+..|.||||+|+..|+.+++++|++
T Consensus       141 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  220 (291)
T d1s70b_         141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ  220 (291)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccc
Confidence                                                                  23448899999999999999999999


Q ss_pred             CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCC
Q 010439          108 CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (510)
Q Consensus       108 ~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~g  178 (510)
                      +|++++.++..|+||||+|+..|+.++|++|+++|++++  .+|..|+|||| +|++    +++++|.+.+
T Consensus       221 ~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~--~~d~~G~TaL~-~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--AVNKVGQTAFD-VADE----DILGYLEELQ  284 (291)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTTT-SCCS----GGGHHHHHHH
T ss_pred             ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHH----HHHHHHHHHh
Confidence            999999999999999999999999999999999999999  89999999999 8875    4666665443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.5e-26  Score=229.20  Aligned_cols=223  Identities=21%  Similarity=0.138  Sum_probs=171.2

Q ss_pred             hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC-----------
Q 010439           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-----------   81 (510)
Q Consensus        13 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~-----------   81 (510)
                      .+.++.++|++|+..++.++|+.|+++|++++..+.+|.+|||+|+.. ++.+++++|+++|++++..+           
T Consensus       128 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  206 (408)
T d1n11a_         128 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH-NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA  206 (408)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT-TCHHHHHHHGGGTCCSCCCCTTCCCHHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHc-CCHHHHHHHHhcCCcccccCCCCCCcchhhh
Confidence            344555555555555555555555555555555555555555555554 55555555555555544321           


Q ss_pred             --------------------CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 010439           82 --------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (510)
Q Consensus        82 --------------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  141 (510)
                                          .+..|.||||+|+..+..+++++++..+.+.+..+..|.|||+.|+..++.+++++|+++
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~  286 (408)
T d1n11a_         207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH  286 (408)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHC
Confidence                                155678888888899999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcCCCCCCCCC
Q 010439          142 ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPD  221 (510)
Q Consensus       142 ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~  221 (510)
                      |++++  ..+..+.|||| .++..++.++++++++.|++++.++..|.++++.+++.++...+..|+..        |++
T Consensus       287 g~~~~--~~~~~~~t~L~-~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~--------GAd  355 (408)
T d1n11a_         287 GVMVD--ATTRMGYTPLH-VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN--------GAS  355 (408)
T ss_dssp             TCCTT--CCCSSCCCHHH-HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--------TCC
T ss_pred             CCccc--cccccccccch-hhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC--------CCC
Confidence            99998  88899999999 99999999999999999999999999999999999999987777665443        556


Q ss_pred             CceEEecCCCcceeeehhcCC-CChHHHH
Q 010439          222 PSLTIYDQATKIRYKFASANE-GDKHQLQ  249 (510)
Q Consensus       222 ~~~~~~d~~~~t~l~~a~~~~-~~~~ql~  249 (510)
                        ++++|+.|+|||++|+... .+.++++
T Consensus       356 --~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         356 --PNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             --SCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             --CCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence              7789999999999999553 3445544

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7e-27  Score=196.02  Aligned_cols=121  Identities=28%  Similarity=0.336  Sum_probs=111.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCC-hHHHHHH
Q 010439           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG-TPLHHAA   94 (510)
Q Consensus        16 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~-TpLh~A~   94 (510)
                      .+.++||+|+..|++++|++||++|+++|.+|..|.||||+|+ . |+.+++++|+++|++++.+  +..|. ||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~-g~~~~v~~Ll~~ga~~~~~--~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-c-ccccccccccccccccccc--ccccccccccccc
Confidence            3568999999999999999999999999999999999999775 5 8999999999999999988  66665 6999999


Q ss_pred             HcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 010439           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  140 (510)
Q Consensus        95 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~  140 (510)
                      +.|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999975

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.9e-25  Score=204.17  Aligned_cols=193  Identities=20%  Similarity=0.103  Sum_probs=135.4

Q ss_pred             ccChhh-hcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            7 SMNQHQ-QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         7 ~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      +.+++. .|.+|.||||+||..|+.++|++||+.|+++|.++..+.++++.++.. ++.................. ...
T Consensus        12 g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~   89 (209)
T d1ot8a_          12 GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA-DAMGVFQILLRNRATNLNAR-MHD   89 (209)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHTCTTCCTTCC-CTT
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccc-cccccccccccccccccccc-ccc
Confidence            456666 589999999999999999999999999999999999999999999886 55555544444332222211 445


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~  165 (510)
                      |.+..+.+.........++|+..+++++.++..|+|||++++..+..++++.|++++.+++  .+|..|.|||| +|+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g~TpL~-~A~~~  166 (209)
T d1ot8a_          90 GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD--AQDDKDETPLF-LAARE  166 (209)
T ss_dssp             CCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred             ccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc--ccccccccccc-hhccc
Confidence            6666666666666666666666666666666666666666666666666666666666666  56666666666 66666


Q ss_pred             CCHHHHHHHhhCCCCCCCCCccccccccccccccChHHH
Q 010439          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  204 (510)
Q Consensus       166 ~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i  204 (510)
                      |+.+++++|+++|+|++.++..+.+|++.|++.++...+
T Consensus       167 g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         167 GSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIV  205 (209)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            666666666666666666666666666666666665444

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3.5e-27  Score=195.73  Aligned_cols=107  Identities=31%  Similarity=0.379  Sum_probs=91.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcC
Q 010439           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g   97 (510)
                      +|||++|+++|+.++|++|+++|++++.+|.+|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+.+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~-~~~~~~~~ll~~g~din~~--d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHH-STTTHHHHHHHSSCTTTCC--SSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccc-cccccccccccccceeeec--ccccccchhhhhhcC
Confidence            5788888888888888888888888888888888888888887 8888888888888888887  788888888888888


Q ss_pred             CHHHHHHHHHCCCCCccCCCCCCcHHHHHH
Q 010439           98 LEPTVRLLLSCGANALVRNDDCHTALGVAR  127 (510)
Q Consensus        98 ~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~  127 (510)
                      +.+++++|+++|+|++.+|.+|+||||+|.
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            888888888888888888888888888773

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.1e-26  Score=191.55  Aligned_cols=122  Identities=25%  Similarity=0.289  Sum_probs=108.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcC
Q 010439           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g   97 (510)
                      .++||.|+..|+.++|++|+++|+|+|.+|.+|+||||+|+.. ++.+++++|+++|++++..  |.+|+||||+|+.+|
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~-~~~~~~~~ll~~g~~~~~~--d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHHTT
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccc-ccccccccccccccccccc--cccCcccccccchhh
Confidence            3789999999999999999999999999999999999999998 8999999999999999988  889999999999999


Q ss_pred             CHHHHHHHHHCCCCCccCCC-CCCcHHHHH--HHcCCHHHHHHHHhcc
Q 010439           98 LEPTVRLLLSCGANALVRND-DCHTALGVA--RIKGHINVVRAIESHI  142 (510)
Q Consensus        98 ~~~~v~~Ll~~gad~~~~d~-~g~TpL~~A--~~~g~~~~v~~Ll~~g  142 (510)
                      +.++|++|+++|++++..+. .|.|+++++  ..+|+.+++++|++.+
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999998774 578887765  5678899999998764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=2.4e-27  Score=234.61  Aligned_cols=196  Identities=14%  Similarity=0.081  Sum_probs=157.2

Q ss_pred             ChhhhcCCchHHHHHHHHcCCHHHHHH---HHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            9 NQHQQRQSKDELLYQWVIAGDVDAIRA---LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         9 ~~~~~~~~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      ..+.++..|.|+||+|+++|+.++|++   |++.|+++|.+|.+|+||||+||.+ |+.++|++|+++|++++..+.+..
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~-G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCccccccccC
Confidence            346778899999999999999887765   7899999999999999999999998 999999999999999998733456


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCC---ccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccc-----------
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-----------  151 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-----------  151 (510)
                      |+||||+|+.+|+.++|++|++.|++.   +..+.+|.||+|.|+.+|+.++|++|+++|++++  ..+           
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~--~~~~~~~~~~~~~~  238 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA--YAEIHEFEYGEKYV  238 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH--HHHHCTTTTTTTTH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc--hHHHHHHHcCcHhh
Confidence            999999999999999999999999765   3444567888999999999999999999987654  111           


Q ss_pred             ----------------------cC----------------CCCHHHHHhhhcCCHHHHHHHhhCCCCC-----CCCCccc
Q 010439          152 ----------------------FY----------------GPSFLEALAPQLMSRKIWVVVIPCGTAN-----PSKPLRF  188 (510)
Q Consensus       152 ----------------------~~----------------g~t~L~~~A~~~~~~~~~~~Ll~~ga~~-----~~~~~~~  188 (510)
                                            ..                +.++|+ .++..+..+++++|++.+...     +..+..+
T Consensus       239 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g  317 (346)
T d2ajaa1         239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI-RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA  317 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHH-HHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred             hHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHH-HHhcCChHHHHHHHHhCcChhhhcccccCCCCC
Confidence                                  11                124566 677778899999999877643     3334467


Q ss_pred             cccccccccccChHHHHHHH
Q 010439          189 ELVIYPSLQDVQPRAVIALW  208 (510)
Q Consensus       189 ~~~l~~a~~~~~~~~i~~l~  208 (510)
                      +++++.|++.++...+..|+
T Consensus       318 ~T~LhlA~~~Gn~e~v~lLL  337 (346)
T d2ajaa1         318 NELLRLALRLGNQGACALLL  337 (346)
T ss_dssp             CHHHHHHHHHTCTTHHHHHT
T ss_pred             CcHHHHHHHcCcHHHHHHHh
Confidence            89999999999877776543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7.6e-25  Score=212.34  Aligned_cols=181  Identities=10%  Similarity=0.043  Sum_probs=110.5

Q ss_pred             ccChhhh-cCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCc-------HHHHHHHHHcCCCcc
Q 010439            7 SMNQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-------INVAKTLIELGANIN   78 (510)
Q Consensus         7 ~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~-------~~~v~~Ll~~ga~~n   78 (510)
                      ++++|.. |.+|+||||+||..|+.++|++||++|++++.+|..|+||||+||.. ++       .+++++|.   .+++
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~~~~~~~~ll~~l~---~~~~  171 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLY---PCLI  171 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHG---GGGG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhc-ccchhhhhHHHHHHHHh---hhhh
Confidence            4455654 88899999999999999999999999999999999999999999975 43       23444443   3456


Q ss_pred             ccCCCCCCChHHHHHHHcCC----HH--------HHHHHHHCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHH-h--cc
Q 010439           79 AYRPGGRGGTPLHHAAKRGL----EP--------TVRLLLSCGAN-ALVRNDDCHTALGVARIKGHINVVRAIE-S--HI  142 (510)
Q Consensus        79 ~~~~d~~g~TpLh~A~~~g~----~~--------~v~~Ll~~gad-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll-~--~g  142 (510)
                      .+  |..|+||||+++..+.    ..        ++.+++..+.. .......+.++++.+........+..+. .  .+
T Consensus       172 ~~--d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         172 LE--DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             EE--CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hc--ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            66  7889999998886443    22        33445554432 2223334444444444333322222110 0  01


Q ss_pred             ccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccc
Q 010439          143 CYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL  196 (510)
Q Consensus       143 a~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~  196 (510)
                      ..+|  .+|.+|+|||| +|++.|+.+++++|+++|++++.++..|.+|+..++
T Consensus       250 ~~in--~~D~~G~TpLh-~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 NMLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HTTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCcc--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            1244  56777777777 777777777777777777777777777777776653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=8.2e-26  Score=187.34  Aligned_cols=107  Identities=24%  Similarity=0.258  Sum_probs=103.0

Q ss_pred             ChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcC
Q 010439           51 KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (510)
Q Consensus        51 ~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  130 (510)
                      .|||++|+.+ |+.++|++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|
T Consensus         3 ~tpL~~A~~~-g~~~~v~~Ll~~g~d~n~~--~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHTTTCCCCCC--SSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHC-CCHHHHHHHHHhhhccccc--cccccccccccccccccccccccccccceeeecccccccchhhhhhcC
Confidence            4899999998 9999999999999999998  889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhccccccccccccCCCCHHHHHhh
Q 010439          131 HINVVRAIESHICYFCGWLREFYGPSFLEALAP  163 (510)
Q Consensus       131 ~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~  163 (510)
                      +.+++++|+++|++++  .+|.+|.|||| +|.
T Consensus        80 ~~~~v~~Ll~~Gad~~--~~d~~G~t~l~-~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSKGADKT--VKGPDGLTALE-ATD  109 (118)
T ss_dssp             CCHHHHHHHTTCCCSS--SSSSSTCCCCC-TCS
T ss_pred             chhhhhhhhcccccce--eeCCCCCCHHH-HHh
Confidence            9999999999999999  89999999999 773

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.9e-25  Score=184.08  Aligned_cols=120  Identities=22%  Similarity=0.254  Sum_probs=113.8

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCC-cHHHHHHH
Q 010439           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH-TALGVARI  128 (510)
Q Consensus        50 g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~-TpL~~A~~  128 (510)
                      +.++||+|+.+ |+.+++++|+++|+|+|.+  |..|+||||+|+ .|+.+++++|+++|++++.++..|. ||||+|+.
T Consensus         3 ~~~~L~~Aa~~-G~~~~v~~Ll~~gad~n~~--~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHC-CCHHHHHHHHHcCCccccc--cccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            57899999998 9999999999999999998  899999999775 7999999999999999999998876 69999999


Q ss_pred             cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhh
Q 010439          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (510)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~  176 (510)
                      .|+.+++++|+++|++++  .+|..|+|||| +|+.+|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~~~--~~d~~G~T~l~-~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc--cccCCCCCHHH-HHHHcCCHHHHHHHHh
Confidence            999999999999999999  89999999999 9999999999999975

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=186.96  Aligned_cols=131  Identities=25%  Similarity=0.364  Sum_probs=123.9

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCC
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~   85 (510)
                      .+.+++.+|..|.||||+|+ .|+.++|++||+++.+++..+..|.+||++++.. ++.+++++++++|+++|.+  |..
T Consensus        25 ~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~n~~--~~~  100 (156)
T d1bd8a_          25 ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVP--DGT  100 (156)
T ss_dssp             TCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCC--CTT
T ss_pred             CCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--cCC
Confidence            35678889999999999987 5899999999999999999999999999999998 9999999999999999998  889


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 010439           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (510)
Q Consensus        86 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  141 (510)
                      |+||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|++|
T Consensus       101 ~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         101 GALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999999887 7899999999999999999999999999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.2e-23  Score=182.12  Aligned_cols=126  Identities=19%  Similarity=0.215  Sum_probs=114.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccc------CCCCChHHHHHHHhC--CcHHHHHHHHHcCCCccccCCCCCCChH
Q 010439           18 DELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPGGRGGTP   89 (510)
Q Consensus        18 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------d~~g~TpL~~A~~~~--~~~~~v~~Ll~~ga~~n~~~~d~~g~Tp   89 (510)
                      ...|+.|++.+++..|..++..|+|++..      +..|+||||+|+..+  ++.+++++|+++|+++|.+  |..|+||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~--d~~g~Tp   84 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTA   84 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhh--hhhhccc
Confidence            34577889999999999999999887755      678999999999752  6789999999999999998  8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccc
Q 010439           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF  145 (510)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~  145 (510)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|++.++..
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999987643

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-24  Score=180.27  Aligned_cols=121  Identities=15%  Similarity=0.121  Sum_probs=112.0

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCC
Q 010439           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (510)
Q Consensus        52 TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  131 (510)
                      +.||.||.. |+.++|++|+++|+|+|.+  |..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~-G~~~~v~~Ll~~g~d~n~~--d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccccccccccccccccccccccccccccccccccccCcccccccchhhH
Confidence            689999998 9999999999999999998  8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccccc-CCCCHHHHHh--hhcCCHHHHHHHhhCC
Q 010439          132 INVVRAIESHICYFCGWLREF-YGPSFLEALA--PQLMSRKIWVVVIPCG  178 (510)
Q Consensus       132 ~~~v~~Ll~~ga~~~~~~~d~-~g~t~L~~~A--~~~~~~~~~~~Ll~~g  178 (510)
                      .++|++|+++|++++  .++. .|+|+++ ++  ...|+.+++++|+..+
T Consensus        80 ~~~v~~Ll~~ga~v~--~~~~~~~~~~~~-~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          80 VQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHHcChHHHHHHHHhHH
Confidence            999999999999998  5654 5889877 44  5778899999998654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-23  Score=181.55  Aligned_cols=149  Identities=17%  Similarity=0.136  Sum_probs=140.9

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcCC
Q 010439           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (510)
Q Consensus        52 TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  131 (510)
                      +|||+||.. |+.++|++|+++|+|+|.+  |..|+||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..++
T Consensus         3 ~~Lh~Aa~~-g~~~~v~~Ll~~g~d~n~~--d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAAR-GDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHH-TCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHc-CCHHHHHHHHHCCCCcCcc--CCcccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            899999998 9999999999999999998  899999999886 789999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCC-CCCCCCccccccccccccccChHHHHHH
Q 010439          132 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT-ANPSKPLRFELVIYPSLQDVQPRAVIAL  207 (510)
Q Consensus       132 ~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga-~~~~~~~~~~~~l~~a~~~~~~~~i~~l  207 (510)
                      .+.++.|++++.+++  ..+..|.+||| +|+..++.+++++|+++++ +.+.++..+++|++.+...++.+.+..|
T Consensus        79 ~~~~~~l~~~~~~~~--~~~~~~~~~l~-~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          79 LDTLQTLLEFQADVN--IEDNEGNLPLH-LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccc--ccccccccccc-cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999998  89999999999 9999999999999999987 7889999999999999999887776544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.2e-23  Score=188.85  Aligned_cols=162  Identities=24%  Similarity=0.224  Sum_probs=143.6

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCChHHHHHHHhCCcHHHHHHHHHcC-----------
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-----------   74 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~~~~~~~v~~Ll~~g-----------   74 (510)
                      .+++++.+|..|+||||+|+..|+.++|+.|+++|++++..+..|.++++.|... ++.++++.+....           
T Consensus        29 ~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~  107 (228)
T d1k1aa_          29 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARN  107 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred             CCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccccc-ccccchhhhhhccccccccccccc
Confidence            3567888999999999999999999999999999999999999999999999886 7777777665532           


Q ss_pred             --------------------------CCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHH
Q 010439           75 --------------------------ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (510)
Q Consensus        75 --------------------------a~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~  128 (510)
                                                .+.... .+..|.++|++|+..+...+++.++++|.+++.+|..|.||||+|+.
T Consensus       108 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~  186 (228)
T d1k1aa_         108 YDGLTALHVAVNTECQETVQLLLERGADIDAV-DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG  186 (228)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhccccccccc-cccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHH
Confidence                                      111111 14468999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH
Q 010439          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (510)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~  172 (510)
                      .|+.+++++|+++|+|++  .+|.+|.|||| +|+.+++.++++
T Consensus       187 ~g~~~~v~~Ll~~Gad~n--~~d~~G~TpL~-~A~~~~~~divk  227 (228)
T d1k1aa_         187 RGLLPLVRTLVRSGADSS--LKNCHNDTPLM-VARSRRVIDILR  227 (228)
T ss_dssp             HTCHHHHHHHHHTTCCTT--CCCTTSCCTTT-TCSSHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHhCCCccccC
Confidence            999999999999999999  89999999999 999999988875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=3.2e-23  Score=189.07  Aligned_cols=197  Identities=23%  Similarity=0.215  Sum_probs=175.8

Q ss_pred             HHHHHHHHHcCCCCcc-cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHC
Q 010439           30 VDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC  108 (510)
Q Consensus        30 ~~~v~~Ll~~g~~~~~-~d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~  108 (510)
                      .|+|++||++|+|+|. .|.+|.||||+||.. |+.+++++|+++|+++|.+  +..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~-g~~e~v~~Ll~~g~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARF-ARADAAKRLLDAGADANSQ--DNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHc-CCHHHHHHHHhhccccccc--cccccccccccccccccccccccccc
Confidence            5899999999999998 589999999999998 9999999999999999998  89999999999999998888777765


Q ss_pred             CCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCcc
Q 010439          109 GAN-ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLR  187 (510)
Q Consensus       109 gad-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~  187 (510)
                      ... .......|.+..+.+.......+.+.|...+++++  .++..|.|||+ .++..+..++++.|+..+.+++..+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~--~~~~~~~t~l~-~~~~~~~~~~~~~l~~~~~~~~~~d~~  155 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN--AADNSGKTALH-WAAAVNNTEAVNILLMHHANRDAQDDK  155 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhccccc--ccCCCCCCcch-hhcccCcceeeeeeccccccccccccc
Confidence            433 33455678899999999999999999999999998  89999999999 999999999999999999999999999


Q ss_pred             ccccccccccccChHHHHHHHHhhcCCCCCCCCCCceEEecCCCcceeeehhcCC
Q 010439          188 FELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (510)
Q Consensus       188 ~~~~l~~a~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~d~~~~t~l~~a~~~~  242 (510)
                      +.++++.++..++...+..|+.        .+++  +++.|..|+|||++|+.+.
T Consensus       156 g~TpL~~A~~~g~~~~v~~Ll~--------~gad--~n~~d~~g~Tpl~~A~~~~  200 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKALLD--------NFAN--REITDHMDRLPRDVASERL  200 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHH--------TTCC--TTCCCTTSCCHHHHHHHTT
T ss_pred             cccccchhccccHHHHHHHHHH--------CCCC--CCCcCCCCCCHHHHHHHcC
Confidence            9999999999999888776554        3456  6678999999999999543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.4e-22  Score=175.39  Aligned_cols=148  Identities=21%  Similarity=0.219  Sum_probs=140.0

Q ss_pred             ChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCCCCCCcHHHHHHHcC
Q 010439           51 KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (510)
Q Consensus        51 ~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  130 (510)
                      .||||.||+. |+.++|++||++|++++ .  |..|+||||+|+..++.++++.++.........+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~-g~~~~v~~LL~~ga~~~-~--~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARA-GQDDEVRILMANGAPFT-T--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHH-TCHHHHHHHHHHTCCCC-C--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHC-CCHHHHHHHHHcCCCcc-c--ccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            4999999998 99999999999999987 3  889999999999999999999999998888888899999999999999


Q ss_pred             CHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCCCCCCccccccccccccccChHHHH
Q 010439          131 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (510)
Q Consensus       131 ~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~  205 (510)
                      +.+++++|+.++++.+  .+|.+|.|||| +|+..++.+++++|+++|++++.++..+.+|+++++..++...+.
T Consensus        79 ~~~~~~~l~~~~~~~~--~~~~~g~T~L~-~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_          79 HANIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             CHHHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cceeeecccccCCccc--cccccCchHHH-hhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999998  89999999999 999999999999999999999999999999999999998876553

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=1.2e-24  Score=214.91  Aligned_cols=170  Identities=14%  Similarity=0.039  Sum_probs=136.4

Q ss_pred             cccChhhhcCCchHHHHHHHHcCCHHHHHHHHHcCCCCcccC--CCCChHHHHHHHhCCcHHHHHHHHHcCCCccccC-C
Q 010439            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYR-P   82 (510)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~-~   82 (510)
                      .+++++.+|.+|+||||+||++|+.++|++|+++|++++..+  .+|+||||+||.+ |+.++|++|++.|++....+ .
T Consensus       115 ~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~-g~~~iv~~Ll~~~~~~~~~~~~  193 (346)
T d2ajaa1         115 SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN-GHLHVLNRLCELAPTEATAMIQ  193 (346)
T ss_dssp             CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT-TCHHHHHHHHHSCGGGHHHHHH
T ss_pred             CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHH-hhHHHHHHHHHcCCcccccccc
Confidence            467788899999999999999999999999999999998876  4699999999998 99999999999998753220 0


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC---------------------------------CCC-----------
Q 010439           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR---------------------------------NDD-----------  118 (510)
Q Consensus        83 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~---------------------------------d~~-----------  118 (510)
                      +..|.||||+|+.+|+.++|++|+++|++++..                                 ...           
T Consensus       194 ~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~  273 (346)
T d2ajaa1         194 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC  273 (346)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHH
T ss_pred             cCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccc
Confidence            345678888899999999999999987643210                                 111           


Q ss_pred             -----CCcHHHHHHHcCCHHHHHHHHhcccccc---ccccccCCCCHHHHHhhhcCCHHHHHHHhhC
Q 010439          119 -----CHTALGVARIKGHINVVRAIESHICYFC---GWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (510)
Q Consensus       119 -----g~TpL~~A~~~g~~~~v~~Ll~~ga~~~---~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~  177 (510)
                           +.++|+.|+..++.+++++|++.+....   ....+.+|.|||| +|++.|+.+++++||+.
T Consensus       274 ~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh-lA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR-LALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH-HHHHHTCTTHHHHHTTS
T ss_pred             cccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH-HHHHcCcHHHHHHHhCC
Confidence                 2367778888889999999999876432   1134567899999 99999999999999964

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.1e-22  Score=197.07  Aligned_cols=165  Identities=16%  Similarity=0.002  Sum_probs=110.6

Q ss_pred             cCCCCccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCccccCCCCCCChHHHHHHHcCCH-------HHHHHHHHCCC
Q 010439           39 QGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE-------PTVRLLLSCGA  110 (510)
Q Consensus        39 ~g~~~~~~-d~~g~TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~~d~~g~TpLh~A~~~g~~-------~~v~~Ll~~ga  110 (510)
                      .+.++|.. |..|+||||+||.. |+.++|++||++|+|++.+  |..|+||||+|+..++.       +++++|.   .
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~-g~~~~v~~Ll~~gad~~~~--d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~  168 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLY---P  168 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---G
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcC--CcccccHHHHhhhcccchhhhhHHHHHHHHh---h
Confidence            56788865 89999999999997 9999999999999999998  88999999999987652       3444443   3


Q ss_pred             CCccCCCCCCcHHHHHHHcCC----HH--------HHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHH-----H
Q 010439          111 NALVRNDDCHTALGVARIKGH----IN--------VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV-----V  173 (510)
Q Consensus       111 d~~~~d~~g~TpL~~A~~~g~----~~--------~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~-----~  173 (510)
                      +++.+|..|+||||+++..+.    ..        ++.++++.+..... .....+.++++ .+.......++.     .
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  246 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ-SGTNEKESKPN-DKNGERKDSILENLDLKW  246 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEE-EC-----------------CHHHHHCSHHH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchh-cccccccchhH-HHHhcchHHHHHHHhhHH
Confidence            466788999999999887544    22        34455555544331 34445566666 343333322222     2


Q ss_pred             HhhCCCCCCCCCccccccccccccccChHHHHHHHHhhcC
Q 010439          174 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKID  213 (510)
Q Consensus       174 Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~i~~l~~~~~~  213 (510)
                      ++.  ..++.+|..|++|++++++.++...+..|+.....
T Consensus       247 ~~~--~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd  284 (301)
T d1sw6a_         247 IIA--NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD  284 (301)
T ss_dssp             HHH--HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred             HHh--cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            222  23677888999999999999999999888865443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7e-22  Score=188.79  Aligned_cols=136  Identities=24%  Similarity=0.254  Sum_probs=96.5

Q ss_pred             hhcCCchHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCChHHHHHHHh---CCcHHHHHHHHHcCCCccccCCCCCCC
Q 010439           12 QQRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMD---SGLINVAKTLIELGANINAYRPGGRGG   87 (510)
Q Consensus        12 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~---~~~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (510)
                      .....|.||||+|++.|+.+++++|+++ |++++..+..|.++++.+...   ++..+++++|+++|++++.+  |..|.
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~--~~~g~  220 (285)
T d1wdya_         143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR--GERGK  220 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC--CTTSC
T ss_pred             hhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCcc--CCCCC
Confidence            3455677777777777777777777764 677777777777776665443   13346777777777777766  67777


Q ss_pred             hHHHHHHHcCCHHHHHHHHHC-CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHhccccccccccc
Q 010439           88 TPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE  151 (510)
Q Consensus        88 TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d  151 (510)
                      ||||+|+..|+.++|++||+. |++++.+|.+|.||||+|++.|+.++|++|+++||++|  .+|
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n--~~d  283 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD--CGD  283 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC--CSS
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccc
Confidence            777777777777777777763 77777777777777777777777777777777777777  554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.9e-21  Score=167.03  Aligned_cols=126  Identities=14%  Similarity=0.055  Sum_probs=112.7

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCCccccC----CCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCccCCCCCCcHHH
Q 010439           52 TPLIVACMDSGLINVAKTLIELGANINAYR----PGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCHTALG  124 (510)
Q Consensus        52 TpL~~A~~~~~~~~~v~~Ll~~ga~~n~~~----~d~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~TpL~  124 (510)
                      ..|+.|+.. +++..+..++..|+|++...    .+..|+||||+|++.   +..++|++|+++|++++.+|..|+||||
T Consensus         8 ~~L~~Av~~-~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKT-RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHh-CCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            345677776 88998999999998877541    256799999999974   6789999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhccccccccccccCCCCHHHHHhhhcCCHHHHHHHhhCCCCC
Q 010439          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (510)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~t~L~~~A~~~~~~~~~~~Ll~~ga~~  181 (510)
                      +|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|++.++..
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccCcccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999999  89999999999 999999999999999987654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.6e-12  Score=93.00  Aligned_cols=50  Identities=34%  Similarity=0.785  Sum_probs=43.8

Q ss_pred             cccccccccccceEEeCCCCccchHHhHHHHhcc-CCccccccccccceeEe
Q 010439          457 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRL  507 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~~~~i  507 (510)
                      ..|.||++...+++++||||.| |..|+.+|... ...||+||..|.....|
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEE-CHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCccCCCcCCCeEEeCCCCee-eHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            4799999999999999999999 99999999764 45799999999875544

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.09  E-value=1.2e-11  Score=89.56  Aligned_cols=49  Identities=29%  Similarity=0.810  Sum_probs=42.6

Q ss_pred             cccccccccccce-EEeCCCCccchHHhHHHHhccCCccccccccccceeE
Q 010439          457 SSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  506 (510)
Q Consensus       457 ~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~  506 (510)
                      ..|+||++.+.+. +.+||||.| |..|+.+|.+.+.+||+||.+|...+.
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~F-c~~Ci~~w~~~~~~CP~CR~~i~~~~~   55 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCccCCcCccCCcEEeCCCCcC-cHHHHHHHHHhCCcCCCCCcchHhhcc
Confidence            5799999998765 457999999 999999999888899999999976554

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=6.5e-11  Score=88.98  Aligned_cols=48  Identities=27%  Similarity=0.529  Sum_probs=42.0

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      +...|+||++.+.+++.++|||.| |..|+.+|.+. ..+||+||.++..
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCcCCccCCcchhcceecCCCChh-hHHHHHHHHhhCCCcCcccCCCCCh
Confidence            346899999999999999999999 99999998754 4589999998853

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-11  Score=85.16  Aligned_cols=44  Identities=25%  Similarity=0.591  Sum_probs=38.3

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      +..+|+||++.+.+++.+||||.| |..|+.++   +.+||+||+++.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~f-C~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHH-hHHHHHcC---CCcCcCCCCccc
Confidence            346899999999999999999999 99998654   347999999986

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.98  E-value=9.2e-11  Score=80.43  Aligned_cols=46  Identities=22%  Similarity=0.646  Sum_probs=38.3

Q ss_pred             cccccccccccccc---eEEe-CCCCccchHHhHHHHhccCCccccccccc
Q 010439          455 SSSSCVICWEAPVE---GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKI  501 (510)
Q Consensus       455 ~~~~C~iC~~~~~~---~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i  501 (510)
                      +..+|+||++.+..   ++.+ +|||.| |..|+.+|...+..||+||.+|
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~F-h~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcc-cHHHHHHHHHhCCcCCCCCCEe
Confidence            34579999998643   4444 599999 9999999998888999999976

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=2e-10  Score=79.24  Aligned_cols=49  Identities=16%  Similarity=0.315  Sum_probs=43.6

Q ss_pred             ccccccccccceEEeC-CCCccchHHhHHHHhccCCccccccccccc--eeEe
Q 010439          458 SCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKINQ--VIRL  507 (510)
Q Consensus       458 ~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~--~~~i  507 (510)
                      .|+||++...++|.++ |||.| |++|+.+|...+++||+||+++..  .+++
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~f-c~~cI~~~l~~~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred             CCccCCchHHhcCccCCCCCcc-cHHHHHHHHhhccCCCccCCcCCHHhceeC
Confidence            6999999999999885 99999 999999999988899999999863  4444

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.6e-10  Score=80.62  Aligned_cols=47  Identities=28%  Similarity=0.710  Sum_probs=37.4

Q ss_pred             ccccccccccc-----cceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          456 SSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       456 ~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      +..|+||++..     ...+..+|||.| |..|+..|... +..||+||+++..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHh-hHHHHHHHhCcCcCCCCCCCcCccc
Confidence            46899999852     234566999999 99999999754 4579999999854

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.9e-10  Score=76.43  Aligned_cols=45  Identities=29%  Similarity=0.679  Sum_probs=36.3

Q ss_pred             cccccccccc----ceEEeCCCCccchHHhHHHHhcc-CCccccccccccc
Q 010439          458 SCVICWEAPV----EGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  503 (510)
Q Consensus       458 ~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  503 (510)
                      +|+||++.+.    .....+|||.| |..|+.+|... +.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~-c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCC-CHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCcc-chHHHHHHHhhcCCCCCccCCcCCC
Confidence            7999999752    23345899999 99999999875 4589999998863

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5e-10  Score=88.19  Aligned_cols=46  Identities=30%  Similarity=0.768  Sum_probs=40.6

Q ss_pred             ccccccccccccceEEeCCCCccchHHhHHHHhccC---Ccccccccccc
Q 010439          456 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN  502 (510)
Q Consensus       456 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~Cp~Cr~~i~  502 (510)
                      ...|+||++.+.+++.++|||.| |..|+.+|....   ..||+||.++.
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CcCCCccCchhCCeEEcCCCCch-hhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            35799999999999999999999 999999987653   37999999885

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.1e-09  Score=80.21  Aligned_cols=49  Identities=20%  Similarity=0.119  Sum_probs=43.1

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccC-Cccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  503 (510)
                      .++..|+||++...++|.++|||.| |..|+.++.... ..||+||.++..
T Consensus         5 P~~l~CpIc~~l~~dPv~~~cGhtf-c~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           5 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CccccCcCcCchhhhhcccCCcCee-cHHHHHHHHhcCCccCCCccccccc
Confidence            4557999999999999999999999 999999987654 479999998864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=3.8e-09  Score=78.36  Aligned_cols=48  Identities=17%  Similarity=0.211  Sum_probs=43.1

Q ss_pred             cccccccccccccceEEeCCCCccchHHhHHHHhccC-Cccccccccccc
Q 010439          455 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  503 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  503 (510)
                      ++..|+||++...++|.++|||.| |..|+.+|...+ ..||.|+.++..
T Consensus         7 ~~l~CpIc~~~m~dPV~~~cgh~f-c~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           7 EYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCcCcCchhhCceEccCCCcc-hHHHHHHHHHHCCCCCCcccccCCc
Confidence            457999999999999999999999 999999998764 479999999864

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.4e-08  Score=77.08  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             eEEeCCCCccchHHhHHHHhccCCcccccccccc
Q 010439          469 GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       469 ~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      ++.++|||.| |..|+.+|.+.+..||+||++..
T Consensus        52 ~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEEccccCcc-cHHHHHHHHHHCCcCCCCCCccc
Confidence            6778999999 99999999999899999999764

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=1.7e-08  Score=80.85  Aligned_cols=45  Identities=29%  Similarity=0.667  Sum_probs=36.0

Q ss_pred             ccccccccccc------------------ceEEeCCCCccchHHhHHHHhccC-----Ccccccccccc
Q 010439          457 SSCVICWEAPV------------------EGACVPCGHMAGCMSCLSEIKAKK-----GDCPVCRTKIN  502 (510)
Q Consensus       457 ~~C~iC~~~~~------------------~~~~~pCgH~~~C~~C~~~~~~~~-----~~Cp~Cr~~i~  502 (510)
                      ..|.||++...                  .+.+++|||.| |..|+..|...+     .+||+||+.+.
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~F-H~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChh-hHHHHHHHHHhcCcCCCCccccccchhc
Confidence            47999998753                  24577999999 999999998642     37999998774

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=5.2e-09  Score=81.18  Aligned_cols=45  Identities=31%  Similarity=0.693  Sum_probs=38.6

Q ss_pred             cccccccccccccceEEe-CCCCccchHHhHHHHhccCCcccccccccc
Q 010439          455 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  502 (510)
Q Consensus       455 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~  502 (510)
                      +...|+||++.+.+++.+ +|||.| |..|+.+|..  .+||.||.++.
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~   66 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW   66 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hcCCCccCCchhhcCceeCCCCCch-hHHHHHHHHh--ccccccCCcCc
Confidence            345899999999999865 899999 9999998874  46999998875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6.1e-08  Score=74.78  Aligned_cols=50  Identities=10%  Similarity=0.011  Sum_probs=43.7

Q ss_pred             CcccccccccccccceEEeCCCCccchHHhHHHHhccCCccccccccccc
Q 010439          454 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  503 (510)
Q Consensus       454 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  503 (510)
                      .++..|+||.+...++|.+||||..+|..|+.+|...+..||+||.++..
T Consensus        20 P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            34589999999999999999887533999999999888899999999863

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.32  E-value=1e-07  Score=66.38  Aligned_cols=49  Identities=29%  Similarity=0.491  Sum_probs=39.4

Q ss_pred             CCcccccccccccccceEEeCCC-----CccchHHhHHHHhcc--CCcccccccccc
Q 010439          453 DGSSSSCVICWEAPVEGACVPCG-----HMAGCMSCLSEIKAK--KGDCPVCRTKIN  502 (510)
Q Consensus       453 ~~~~~~C~iC~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~Cp~Cr~~i~  502 (510)
                      +++...|.||++...+....||+     |.| |..|+.+|...  +..||+||+++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~-H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEE-cHHHHHHHHhhCCCCCCcccCCeee
Confidence            34557899999987777667775     998 99999999754  358999999874

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.5e-05  Score=57.86  Aligned_cols=42  Identities=21%  Similarity=0.483  Sum_probs=30.9

Q ss_pred             ccccccccccc--c-eEEeCCCCccchHHhHHHHhcc-----C---Cccccccc
Q 010439          457 SSCVICWEAPV--E-GACVPCGHMAGCMSCLSEIKAK-----K---GDCPVCRT  499 (510)
Q Consensus       457 ~~C~iC~~~~~--~-~~~~pCgH~~~C~~C~~~~~~~-----~---~~Cp~Cr~  499 (510)
                      ..|.||++...  + +.+.+|||.| |..|+..+...     .   -+||.|+-
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~f-C~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEe-CCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            58999998753  3 4455899999 99999876642     1   26998653

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.034  Score=37.47  Aligned_cols=32  Identities=31%  Similarity=0.650  Sum_probs=27.1

Q ss_pred             cccccccccccceEEeCC----CCccchHHhHHHHhc
Q 010439          457 SSCVICWEAPVEGACVPC----GHMAGCMSCLSEIKA  489 (510)
Q Consensus       457 ~~C~iC~~~~~~~~~~pC----gH~~~C~~C~~~~~~  489 (510)
                      ..|.+|.|+..+.-|+.|    +|.| |+.|.....+
T Consensus         9 l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sik   44 (80)
T d2cs3a1           9 LCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESIK   44 (80)
T ss_dssp             CCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHHH
T ss_pred             eeeeeehhhhcCCceEeCCCCcCCce-eccccHHHHH
Confidence            589999999999988888    4999 9999866543