Citrus Sinensis ID: 010447

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
ccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccEEEcccccccEEEEEEEEcccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcc
cHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHccccccccHHHHcccccccccccccccccccccccccHHHccccccEEEEcccccEEEEEccccccEEEEEEEcccHHHcccccccHHHHHHHcccccEccccHHHHHHHHHHccccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHcEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHccccccHHHcccccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHccccccccccccccccEcccEEEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEEEEccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccc
MYRNAASRLRALKGhvrcrvpsatrfasssavastssssgglfswltgersssspsldfplpgvslppslpdyvepgktkistlpngvkiasetsvspvASISLYVGcgsiyespisfgTTHLLERMAFRSTRNRSHLRIVREVEAIggnvqasasreqmGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAgysgalanpllapesAINRLNSTLLEEFvaenytgprmvlaasgvehdqlvsvaepllsdlpsihpreepksvytggdyrcqadsgdqLTHFVLAFelpggwhkdkdaMTLTVLQMLLggggsfsaggpgkgmYSRLYRRVLnefpqvqsfsafsniynhsgmfgiqgttgsdFVSKAIDLAARELIsvatpgevdqVQLDRAKQSTKSAILMNLESrmvvsedigrqvltygerkpveHFLKTVEGVTAKDIASVAQKLLsspltmasygdvinvpsydavsskfksk
myrnaasrlralkghvrcrvpsatrfasssavastssssgglFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVeaiggnvqasasreqMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPllsdlpsihpreepksvytGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISvatpgevdqvqldrakqstksailmnlesrmvvseDIGRQVltygerkpveHFLKTVEGVTAKDIASVAQKLLSSPLtmasygdvinvpsydavsskfksk
MYRNAASRLRALKGHVRCRVPsatrfasssavastssssgglfsWLTGERsssspsLDFplpgvslppslpDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLggggsfsaggpgkgMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
****************************************************************************************KIA**TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK***********SLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPL***************VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEV**************AILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSY**********
******************************************************************************TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLL******************GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSA*****GMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFK**
********LRALKGHVRCRVPSAT****************GLFSWL************FPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYD*********
*YRNAASRLRALKGHVRCRVPSATRFASSSAV*S***************RSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSK*K**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query510 2.2.26 [Sep-21-2011]
P29677504 Mitochondrial-processing N/A no 0.988 1.0 0.729 0.0
Q9ZU25503 Probable mitochondrial-pr yes no 0.986 1.0 0.655 0.0
O04308499 Probable mitochondrial-pr no no 0.978 1.0 0.645 1e-168
P11914482 Mitochondrial-processing yes no 0.811 0.858 0.353 4e-55
P22695453 Cytochrome b-c1 complex s yes no 0.801 0.902 0.328 3e-53
Q10713525 Mitochondrial-processing no no 0.882 0.857 0.337 6e-53
Q5R513525 Mitochondrial-processing no no 0.882 0.857 0.331 7e-53
P97997474 Mitochondrial-processing N/A no 0.8 0.860 0.331 1e-52
Q0P5M8525 Mitochondrial-processing yes no 0.880 0.855 0.328 5e-52
Q9DC61524 Mitochondrial-processing yes no 0.876 0.853 0.322 3e-51
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/510 (72%), Positives = 435/510 (85%), Gaps = 6/510 (1%)

Query: 1   MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFP 60
           MYR A+SRL +LK     RV   TRF+SS+AVA+    SGGLFSW+TG+ SSS   LDFP
Sbjct: 1   MYRCASSRLSSLKARQGNRV--LTRFSSSAAVAT--KPSGGLFSWITGDTSSSVTPLDFP 56

Query: 61  LPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
           L  V L P LPDYVEP KT+I+TL NG+K+ASE SV+P ASI LYV CGSIYE+P S+G 
Sbjct: 57  LNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGA 116

Query: 121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
           THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASASRE M Y++DALKTYVP+MVE+L D
Sbjct: 117 THLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLAD 176

Query: 181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
           CVRNP FLDWEV EQL KVK+EISE S NPQ LLLEA+HSAGY+G   N L+A E+ INR
Sbjct: 177 CVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINR 236

Query: 241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
           LNST+LEEFVAENYT PRMVLAASGVEH++ + VAEPLLSDLP +   EEPK VY GGDY
Sbjct: 237 LNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDY 296

Query: 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYR 360
           RCQAD+  ++THF LAFE+PGGW  +K++MTLTVLQML+GGGGSFSAGGPGKGMYSRLY 
Sbjct: 297 RCQADA--EMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYL 354

Query: 361 RVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQ 420
           RVLN++PQ+ +FSAFS+IYN++G+FGIQGTT SDF  +A+D+A +ELI+VA P EVDQVQ
Sbjct: 355 RVLNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQ 414

Query: 421 LDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQK 480
           L+RAKQ+TKSAILMNLESRMV SEDIGRQ+LTYGER PVEHFLK ++ V+AKDIASV QK
Sbjct: 415 LNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQK 474

Query: 481 LLSSPLTMASYGDVINVPSYDAVSSKFKSK 510
           L+SSPLTMASYGDV+++PSYDAVSS+F+SK
Sbjct: 475 LISSPLTMASYGDVLSLPSYDAVSSRFRSK 504
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1 SV=1 Back     alignment and function description
>sp|P22695|QCR2_HUMAN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3 Back     alignment and function description
>sp|Q10713|MPPA_HUMAN Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2 Back     alignment and function description
>sp|Q5R513|MPPA_PONAB Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2 Back     alignment and function description
>sp|P97997|MPPA_BLAEM Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1 Back     alignment and function description
>sp|Q0P5M8|MPPA_BOVIN Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1 Back     alignment and function description
>sp|Q9DC61|MPPA_MOUSE Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
356513189511 PREDICTED: mitochondrial-processing pept 0.992 0.990 0.791 0.0
356523720509 PREDICTED: mitochondrial-processing pept 0.992 0.994 0.787 0.0
356513191508 PREDICTED: mitochondrial-processing pept 0.994 0.998 0.790 0.0
225445041506 PREDICTED: mitochondrial-processing pept 0.992 1.0 0.8 0.0
357520795510 Mitochondrial-processing peptidase subun 0.996 0.996 0.781 0.0
217075747510 unknown [Medicago truncatula] gi|3885152 0.996 0.996 0.775 0.0
255546263507 mitochondrial processing peptidase alpha 0.994 1.0 0.774 0.0
449487989505 PREDICTED: mitochondrial-processing pept 0.990 1.0 0.770 0.0
449446550505 PREDICTED: mitochondrial-processing pept 0.990 1.0 0.768 0.0
225442426506 PREDICTED: mitochondrial-processing pept 0.992 1.0 0.768 0.0
>gi|356513189|ref|XP_003525296.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/514 (79%), Positives = 456/514 (88%), Gaps = 8/514 (1%)

Query: 1   MYRNAASRLRALKGHVRC----RVPSATRFASSSAVASTSSSS-GGLFSWLTGERSSSSP 55
           MYRNAASRLRA+K    C    RVP++ RFASS A   +SSS  GGLF WLTG+R+SS P
Sbjct: 1   MYRNAASRLRAIKAR-SCSSSSRVPASARFASSVATQQSSSSGLGGLFGWLTGDRTSSLP 59

Query: 56  SLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESP 115
           SL FPLPGV+LPP LPDYV PGKT I+TLPNG+K+ASETS SP ASI LYV CGSIYESP
Sbjct: 60  SLGFPLPGVTLPPPLPDYVAPGKTIITTLPNGLKVASETSPSPTASIGLYVDCGSIYESP 119

Query: 116 ISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMV 175
           ISFG THLLERMAF++TRNRSH R+VREVEAIGGNVQASASREQMGY+FDALKTYVPEMV
Sbjct: 120 ISFGATHLLERMAFKTTRNRSHFRVVREVEAIGGNVQASASREQMGYTFDALKTYVPEMV 179

Query: 176 ELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPE 235
           ELL+DCVRNPVFLDWEVNEQL KVK+EI E S NPQ LLLEAIHSAG+SGALANPLLA E
Sbjct: 180 ELLVDCVRNPVFLDWEVNEQLLKVKAEIGEASKNPQDLLLEAIHSAGFSGALANPLLASE 239

Query: 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVY 295
           SA+NRLNST+LEEFVAENYT PR+VLAASGVEH++L+S+AEPLLSDLPS+   EEPKSVY
Sbjct: 240 SAVNRLNSTILEEFVAENYTAPRIVLAASGVEHEELLSIAEPLLSDLPSVPRPEEPKSVY 299

Query: 296 TGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY 355
           TGGDYRCQ +SG   THF LAFELPGGWHK KDAM LTVLQMLLGGGGSFSAGGPGKGMY
Sbjct: 300 TGGDYRCQKESGR--THFALAFELPGGWHKLKDAMVLTVLQMLLGGGGSFSAGGPGKGMY 357

Query: 356 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE 415
           SRLY+ VLNE+PQV   SAF+NIYN +G+FGIQ TTGSDFVSKAID+AA E+++VATPG+
Sbjct: 358 SRLYQNVLNEYPQVHEISAFNNIYNDTGIFGIQVTTGSDFVSKAIDIAANEILAVATPGQ 417

Query: 416 VDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIA 475
           VDQVQLDRAKQ+TKSAILMNLESRMVVSEDIGRQ+LTYGERKPVE FLK V+ VT+KDI 
Sbjct: 418 VDQVQLDRAKQATKSAILMNLESRMVVSEDIGRQILTYGERKPVEDFLKAVDEVTSKDIT 477

Query: 476 SVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKS 509
           S+++KL+ SPLTMASYGDV+ VPSY++VS KF++
Sbjct: 478 SISRKLICSPLTMASYGDVLYVPSYESVSLKFRA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523720|ref|XP_003530483.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356513191|ref|XP_003525297.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357520795|ref|XP_003630686.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355524708|gb|AET05162.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|217075747|gb|ACJ86233.1| unknown [Medicago truncatula] gi|388515299|gb|AFK45711.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255546263|ref|XP_002514191.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223546647|gb|EEF48145.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449487989|ref|XP_004157901.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449446550|ref|XP_004141034.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225442426|ref|XP_002283426.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297743169|emb|CBI36036.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
TAIR|locus:2034096503 AT1G51980 [Arabidopsis thalian 0.986 1.0 0.582 4.7e-151
TAIR|locus:2088309499 MPPalpha "mitochondrial proces 0.978 1.0 0.562 4e-145
ASPGD|ASPL0000062345570 AN1104 [Emericella nidulans (t 0.431 0.385 0.339 1.1e-59
GENEDB_PFALCIPARUM|PFE1155c534 PFE1155c "mitochondrial proces 0.821 0.784 0.331 2.1e-54
UNIPROTKB|Q8I3N3534 PFE1155c "Mitochondrial proces 0.821 0.784 0.331 2.1e-54
SGD|S000001066482 MAS2 "Larger subunit of the mi 0.801 0.848 0.330 2.6e-54
ZFIN|ZDB-GENE-030131-5809517 pmpca "peptidase (mitochondria 0.847 0.835 0.312 5.5e-54
ZFIN|ZDB-GENE-030131-1269454 uqcrc2b "ubiquinol-cytochrome 0.821 0.922 0.315 2.1e-52
UNIPROTKB|P22695453 UQCRC2 "Cytochrome b-c1 comple 0.819 0.922 0.318 3.1e-51
ZFIN|ZDB-GENE-040718-405460 uqcrc2a "ubiquinol-cytochrome 0.821 0.910 0.313 3.1e-51
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
 Identities = 296/508 (58%), Positives = 365/508 (71%)

Query:     1 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFX 60
             MYR AASR RALKG V  R                         WL+G        LD  
Sbjct:     1 MYRTAASRARALKG-VLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMP 59

Query:    61 XXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
                        D VEP K +I+TLPNG+KIASET+ +P ASI LYV CGSIYE+P   G 
Sbjct:    60 LQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGA 119

Query:   121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
             THLLERMAF+ST NR+H R+VRE+EAIGGN  ASASREQM Y+ DALKTYVPEMVE+LID
Sbjct:   120 THLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLID 179

Query:   181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
              VRNP FLDWEVNE+L K+K EI+E++ NP   LLEAIHSAGYSG LA+PL APESA++R
Sbjct:   180 SVRNPAFLDWEVNEELRKMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDR 239

Query:   241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
             LN  LLEEF+ EN+T  RMVLAASGVEH++L+ VAEPL SDLP++ P+  PKS Y GGD+
Sbjct:   240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLTSDLPNVPPQLAPKSQYVGGDF 299

Query:   301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYR 360
             R    +G + THF +AFE+PG W+ +K+A+T TVLQML+              M+S LYR
Sbjct:   300 R--QHTGGEATHFAVAFEVPG-WNNEKEAVTATVLQMLMGGGGSFSAGGPGKGMHSWLYR 356

Query:   361 RVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQ 420
             RVLNE+ +VQS +AF++I+N +G+FGI G +   F +KAI+LAA+EL  VA  G+V+Q  
Sbjct:   357 RVLNEYQEVQSCTAFTSIFNDTGLFGIYGCSSPQFAAKAIELAAKELKDVAG-GKVNQAH 415

Query:   421 LDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQK 480
             LDRAK +TKSA+LMNLESRM+ +EDIGRQ+LTYGERKPV+ FLK+V+ +T KDIA    K
Sbjct:   416 LDRAKAATKSAVLMNLESRMIAAEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSK 475

Query:   481 LLSSPLTMASYGDVINVPSYDAVSSKFK 508
             ++S PLTM S+GDV+ VPSYD +SSKF+
Sbjct:   476 VISKPLTMGSFGDVLAVPSYDTISSKFR 503
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062345 AN1104 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE1155c PFE1155c "mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I3N3 PFE1155c "Mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
SGD|S000001066 MAS2 "Larger subunit of the mitochondrial processing protease (MPP)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5809 pmpca "peptidase (mitochondrial processing) alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1269 uqcrc2b "ubiquinol-cytochrome c reductase core protein IIb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P22695 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-405 uqcrc2a "ubiquinol-cytochrome c reductase core protein IIa" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9DC61MPPA_MOUSE3, ., 4, ., 2, 4, ., 6, 40.32270.87640.8530yesno
Q0P5M8MPPA_BOVIN3, ., 4, ., 2, 4, ., 6, 40.32840.88030.8552yesno
P29677MPPA_SOLTU1, ., 1, 0, ., 2, ., 20.72940.98821.0N/Ano
Q4W6B5MPPB_DICDI3, ., 4, ., 2, 4, ., 6, 40.31390.82740.8997yesno
P11914MPPA_YEAST3, ., 4, ., 2, 4, ., 6, 40.35360.81170.8589yesno
Q9ZU25MPPA1_ARATH3, ., 4, ., 2, 4, ., 6, 40.65550.98621.0yesno
P22695QCR2_HUMANNo assigned EC number0.32860.80190.9028yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.640.979
3rd Layer3.4.240.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 5e-59
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 6e-42
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 7e-31
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  201 bits (512), Expect = 5e-59
 Identities = 111/421 (26%), Positives = 183/421 (43%), Gaps = 32/421 (7%)

Query: 78  KTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS 136
             ++ TLPNG+++ +     +P  S+ ++V  GS  E     G  H LE MAF+ T    
Sbjct: 16  GLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLP 75

Query: 137 HLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL 196
              +    E +GG + A  S +   Y    L   + + ++LL D + NP F + EV  + 
Sbjct: 76  SAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREK 135

Query: 197 TKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYT 255
             +  EI    ++P  L  E +  A Y    L  P+L  E +I  +    L++F  + Y 
Sbjct: 136 GVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQ 195

Query: 256 GPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRC-----QADSGDQ 309
              MVL   G V+ +++V + E    DLP   P  +       G  R            +
Sbjct: 196 PDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLE 255

Query: 310 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV 369
                L +  P  +    D   L +L  LLGG           G  SRL++ +  +    
Sbjct: 256 QAWLALGYPGP-DYDSPDDYAALLLLNGLLGG-----------GFSSRLFQELREKRGLA 303

Query: 370 QSFSAFSNIYNHSGMFGIQGTTG-------SDFVSKAIDLAARELISVATPGEVDQVQLD 422
            S S+FS+  + SG+F I   T        ++ V + +    + L    T  E     LD
Sbjct: 304 YSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEE-----LD 358

Query: 423 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLL 482
            AKQ     +L++L+S   ++E +G+ +L  G    +E  L+ +E VT +D+ +VA+KLL
Sbjct: 359 AAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLL 418

Query: 483 S 483
           +
Sbjct: 419 A 419

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 510
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 100.0
PRK15101961 protease3; Provisional 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.97
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.97
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.94
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.93
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 99.93
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.88
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.87
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.87
PTZ004321119 falcilysin; Provisional 99.86
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.85
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.85
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 99.79
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 99.38
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.53
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 98.45
PHA03081 595 putative metalloprotease; Provisional 98.23
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 97.99
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 97.89
KOG0960 467 consensus Mitochondrial processing peptidase, beta 96.78
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 96.06
KOG2067472 consensus Mitochondrial processing peptidase, alph 95.07
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 85.57
KOG1374 448 consensus Gamma tubulin [Cytoskeleton] 81.17
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2e-82  Score=591.68  Aligned_cols=432  Identities=49%  Similarity=0.770  Sum_probs=411.8

Q ss_pred             CCCceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEe
Q 010447           75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS  154 (510)
Q Consensus        75 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~  154 (510)
                      ++..+++++|+||+||+.++++++.++++++|++|+++|.+...|++||+++|+|++|.+++..++...++.+|+++.++
T Consensus        21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq  100 (472)
T KOG2067|consen   21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ  100 (472)
T ss_pred             ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCCCC
Q 010447          155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLA  233 (510)
Q Consensus       155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~  233 (510)
                      ++++.+.|.+++.+++++.++++|.|.+.+|.|++|+++.++..++-|+.+...+|+..+.+.+|.++|.+ .++.|+.+
T Consensus       101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c  180 (472)
T KOG2067|consen  101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC  180 (472)
T ss_pred             ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999977 99999999


Q ss_pred             ChHHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCCC--CCCCccCCCceEEecCC-----
Q 010447          234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPRE--EPKSVYTGGDYRCQADS-----  306 (510)
Q Consensus       234 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-----  306 (510)
                      +.+.|+.|+.+.|.+|.+.+|+|.||++..|||+||++++++++||+.||+...++  .++.+|+|+...+..+.     
T Consensus       181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~  260 (472)
T KOG2067|consen  181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG  260 (472)
T ss_pred             ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence            99999999999999999999999999999999999999999999999999865443  35678999976655322     


Q ss_pred             CCCceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEE
Q 010447          307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG  386 (510)
Q Consensus       307 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~  386 (510)
                      ..+-+||.++|++++ | +++|.+++.+|+.+||||||||||||||||+||||.++.++++|+|+|.|++..|.++|+|+
T Consensus       261 g~EltHv~lg~Eg~~-~-~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg  338 (472)
T KOG2067|consen  261 GPELTHVVLGFEGCS-W-NDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG  338 (472)
T ss_pred             ccceeeeeEeeccCC-C-CChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence            126899999999998 6 67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010447          387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTV  466 (510)
Q Consensus       387 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i  466 (510)
                      |+.+++|+++.++++.+.+++.++.. + ++++|++|||.++++.++++++++...+++++||++.+|.++.++++++.|
T Consensus       339 i~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~e~~~~I  416 (472)
T KOG2067|consen  339 IYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKI  416 (472)
T ss_pred             EeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHHHHHHHH
Confidence            99999999999999999999999987 4 999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHhcCCceEEEEcCCCCCCCHHHHHhHhhcC
Q 010447          467 EGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK  510 (510)
Q Consensus       467 ~~vT~~di~~~a~~~l~~~~~~~v~G~~~~~p~~~~i~~~~~~~  510 (510)
                      +++|++||++++.++|..+++++..||..++|+|+.|.+++..|
T Consensus       417 e~lt~~DI~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~~  460 (472)
T KOG2067|consen  417 EQLTPSDISRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSSG  460 (472)
T ss_pred             HhcCHHHHHHHHHHHhcCCceeccCCcccCCcchhhhhhhcccC
Confidence            99999999999999999999999999999999999999988753

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 4e-54
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 3e-52
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 6e-51
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 1e-50
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 5e-48
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-47
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 3e-47
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 3e-47
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 3e-43
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 4e-43
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 4e-43
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 1e-41
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 3e-37
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 7e-37
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 9e-31
1ezv_B352 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 5e-12
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 2e-10
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 2e-10
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 3e-08
1kb9_A431 Yeast Cytochrome Bc1 Complex Length = 431 3e-07
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure 
Iteration: 1

 Score =  209 bits (531), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 142/444 (31%), Positives = 231/444 (52%), Gaps = 30/444 (6%)
Query: 80  KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
           K+S+L NG+K+A+  +    +++ LY+  GS +E     G TH+L+R+AF+ST +     
Sbjct: 7   KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
           +   +E +GGN Q ++SRE + Y        V +M++L+ + VR P   + E+ EQ    
Sbjct: 67  MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA 126
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPR 258
           + EI EV   P+ +L E +H+A YSG  L +PL+ P   I  ++   L ++  + YT   
Sbjct: 127 EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186
Query: 259 MVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADS---GD--QLTH 312
            V A  GV H++ + +    L D  S HP    K + YTGG+  C   +   G+  +L H
Sbjct: 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFH 245
Query: 313 FVLAFE-LPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 371
             + FE LP       D   L  LQ LL              MYSRLY  VLN++  V++
Sbjct: 246 IQIGFEGLP---IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVEN 302
Query: 372 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE--VDQVQLDRAKQSTK 429
             AF++ Y+ SG+FGI  +       +A+++ A+++ +     +  + + ++ RAK   K
Sbjct: 303 CVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLK 362
Query: 430 SAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMA 489
           S++LMNLES++V  ED+GRQVL +G + PV   +  +E +   DI+ VA+ + +  +  A
Sbjct: 363 SSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNA 422
Query: 490 ----------------SYGDVINV 497
                           S+GDV NV
Sbjct: 423 GNGKGRATVVMQGDRGSFGDVENV 446
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 352 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-178
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-174
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 1e-162
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 1e-161
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-145
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-114
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-107
3eoq_A406 Putative zinc protease; two similar domains of bet 4e-93
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 2e-56
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 1e-55
3gwb_A434 Peptidase M16 inactive domain family protein; pept 8e-50
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 2e-39
3go9_A492 Insulinase family protease; IDP00573, structural g 2e-34
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 3e-18
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 2e-16
3ih6_A197 Putative zinc protease; bordetella pertussis toham 1e-15
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 3e-12
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  507 bits (1309), Expect = e-178
 Identities = 129/450 (28%), Positives = 215/450 (47%), Gaps = 11/450 (2%)

Query: 54  SPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYE 113
           S  +   +     P  +P    P   + + LPNG+ IAS  + +P + I L++  GS YE
Sbjct: 1   SLKVAPKVKATEAPAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYE 58

Query: 114 SPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPE 173
           +  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  
Sbjct: 59  NSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDI 118

Query: 174 MVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLA 233
           ++E L++    P F  WEV     +++ + +    NPQ+ ++E +H+A Y  ALAN L  
Sbjct: 119 LMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178

Query: 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKS 293
           P+  I ++    L ++V  ++T  RM L   GV H  L  VAE  L+    +       +
Sbjct: 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAK-A 237

Query: 294 VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG 353
            Y GG+ R Q      L H  L  E         +A   +VLQ +LG G        G  
Sbjct: 238 KYHGGEIREQNGD--SLVHAALVAE--SAAIGSAEANAFSVLQHVLGAG---PHVKRGSN 290

Query: 354 MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATP 413
             S LY+ V     Q    SAF+  Y+ SG+FG    + +      I  A  ++ ++A  
Sbjct: 291 ATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ- 349

Query: 414 GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKD 473
           G +    +  AK   K+  LM++ES     +++G Q L  G   P    L+ ++ V   D
Sbjct: 350 GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADAD 409

Query: 474 IASVAQKLLSSPLTMASYGDVINVPSYDAV 503
           + + A+K +S   +MA+ G++ + P  D +
Sbjct: 410 VINAAKKFVSGRKSMAASGNLGHTPFIDEL 439
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.97
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.91
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.3
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.05
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 97.99
3eoq_A 406 Putative zinc protease; two similar domains of bet 97.96
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 97.91
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 97.91
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 97.88
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 97.83
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 97.81
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.75
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 97.74
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 97.74
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 97.65
3go9_A492 Insulinase family protease; IDP00573, structural g 96.36
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=8.4e-63  Score=513.92  Aligned_cols=428  Identities=35%  Similarity=0.554  Sum_probs=392.8

Q ss_pred             CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEeec
Q 010447           77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS  156 (510)
Q Consensus        77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  156 (510)
                      +.++.++|+||++|++.+.+.+.+++++++++|+.+|++...|++||++||+|+||.+++..++.+.++..|++++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~   83 (475)
T 1hr6_A            4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (475)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence            57899999999999998888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCCCCCh
Q 010447          157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPE  235 (510)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~  235 (510)
                      .+++.|.+++++++++.+|+++.+++.+|.|++++|+++|+.+.+|+++..++|..++.+.++..+|++ +|+++..|+.
T Consensus        84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~  163 (475)
T 1hr6_A           84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (475)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence            999999999999999999999999999999999999999999999999988999999999999999987 9999999999


Q ss_pred             HHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCC-CCCCCccCCCceEEe------cCCCC
Q 010447          236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQ------ADSGD  308 (510)
Q Consensus       236 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~------~~~~~  308 (510)
                      +.|++++.++|++||+++|+|+||+++++|+++++++++++++|+.||....+ ..+.+.+.++..++.      .+.  
T Consensus       164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  241 (475)
T 1hr6_A          164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLP--  241 (475)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSC--
T ss_pred             HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCc--
Confidence            99999999999999999999999999999999999999999999999865443 212234444444444      344  


Q ss_pred             CceEEEEEEecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecCCCCcceEEEE
Q 010447          309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ  388 (510)
Q Consensus       309 ~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~~~~s~L~~~lRe~~~~~Y~v~a~~~~~~~~~~~~i~  388 (510)
                      +++++.++|++++ | ++++.+++.|++.|||++++||+|||||||+++||++||++.|++|+++++...+.+.|.|+++
T Consensus       242 ~~~~v~~~~~~~~-~-~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~  319 (475)
T 1hr6_A          242 ELFHIQIGFEGLP-I-DHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGIS  319 (475)
T ss_dssp             CCEEEEEEEECCC-T-TCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEE
T ss_pred             cceEEEEEEecCC-C-CCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEE
Confidence            7899999999776 4 6789999999999999999999999999999999999999999999999998877788999999


Q ss_pred             EEeCcchHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010447          389 GTTGSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTV  466 (510)
Q Consensus       389 ~~~~p~~~~~~~~~~~~~l~~l~~~--~~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i  466 (510)
                      +.++|+++.++++.+.+++.++.+.  +++|++||+++|+.++.++....+++..+++.++++++.+|.+.+.+++.+.|
T Consensus       320 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  399 (475)
T 1hr6_A          320 LSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKI  399 (475)
T ss_dssp             EEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            9999999999999999999998752  35999999999999999999999999999999998776678777788899999


Q ss_pred             hcCCHHHHHHHHHHHhcC----------CceEEEEcCCCCCCCHHHHHhHhh
Q 010447          467 EGVTAKDIASVAQKLLSS----------PLTMASYGDVINVPSYDAVSSKFK  508 (510)
Q Consensus       467 ~~vT~~di~~~a~~~l~~----------~~~~~v~G~~~~~p~~~~i~~~~~  508 (510)
                      ++||++||++++++++..          +++++++|+...+|+++++.+.+.
T Consensus       400 ~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~  451 (475)
T 1hr6_A          400 EDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG  451 (475)
T ss_dssp             HTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence            999999999999999975          789999999999999999988875
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 510
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 4e-42
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 1e-40
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 4e-40
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 4e-39
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 3e-36
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 4e-36
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 3e-29
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 2e-28
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 5e-25
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 2e-23
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 4e-22
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 8e-17
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2e-16
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 7e-14
d2fgea2196 d.185.1.1 (A:798-993) Presequence protease 1, PREP 3e-06
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  147 bits (371), Expect = 4e-42
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 8/212 (3%)

Query: 292 KSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPG 351
           K+ Y GG+ R Q    D L H  L  E         +A   +VLQ +LG G     G   
Sbjct: 1   KAKYHGGEIREQNG--DSLVHAALVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS-- 54

Query: 352 KGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVA 411
               S LY+ V     Q    SAF+  Y+ SG+FG    + +      I  A  ++ ++A
Sbjct: 55  -NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIA 113

Query: 412 TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTA 471
             G +    +  AK   K+  LM++ES     +++G Q L  G   P    L+ ++ V  
Sbjct: 114 -QGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVAD 172

Query: 472 KDIASVAQKLLSSPLTMASYGDVINVPSYDAV 503
            D+ + A+K +S   +MA+ G++ + P  D +
Sbjct: 173 ADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 204
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.97
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.96
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.96
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.95
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.94
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.89
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.8
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.65
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 99.29
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.12
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.61
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 98.52
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.49
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.48
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 98.4
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.35
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.33
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.3
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 98.18
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.18
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.14
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.07
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 97.9
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 97.9
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.8
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.18
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 95.98
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 94.42
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 82.99
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=274.00  Aligned_cols=212  Identities=33%  Similarity=0.529  Sum_probs=204.6

Q ss_pred             CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeEeec
Q 010447           77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS  156 (510)
Q Consensus        77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  156 (510)
                      ..+++++|+||++|++++.+++.+++++++++|+.+|++...|++|+++||+++||.+++..++.+.++..|+.++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~v~l~~~~G~~~e~~~~~G~a~ll~~ll~~gt~~~~~~~~~~~~~~~g~~~~~~~~   83 (220)
T d1hr6a1           4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (220)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEEcCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCchHHHHHHHHHhccccccchHHHHHHHHHhcchhhhccc
Confidence            46899999999999999999899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEeccCCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCC-CCCCCCCCCh
Q 010447          157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPE  235 (510)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~  235 (510)
                      .+++.|.+++++++++.+|+++.+.+.+|.|++++|+++|..+..+++....+|...+.+.++..+|++ +|+.+..|+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~ek~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~g~~  163 (220)
T d1hr6a1          84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (220)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             ccceeeeccccccccchhhhhhhHhhhcccchhhhhhhhcchhhhhhhhhhccchhhhhhhhccccccccCCcccccccH
Confidence            999999999999999999999999999999999999999999999999999999999999999999987 9999989999


Q ss_pred             HHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhcCCCCCCCCC
Q 010447          236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR  288 (510)
Q Consensus       236 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~~~~~~~~~~~~~~l~~~~~~  288 (510)
                      +.|++|+.++|++||+++|+|+|++++|+|+++++++++++++|++||....|
T Consensus       164 ~~i~~it~~dl~~f~~~~y~~~n~~l~i~G~~~~~~~~~i~~~fg~~~~~~~p  216 (220)
T d1hr6a1         164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPP  216 (220)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHhhCCHHHHHHHHHHhCCcccEEEEEECCCHHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999877543
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure